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Máximo-Canadas M, Modesto-Costa L, Borges I. Ab initio electronic absorption spectra of para-nitroaniline in different solvents: Intramolecular charge transfer effects. J Comput Chem 2024. [PMID: 39212073 DOI: 10.1002/jcc.27493] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2024] [Revised: 07/19/2024] [Accepted: 08/01/2024] [Indexed: 09/04/2024]
Abstract
Intramolecular charge transfer (ICT) effects of para-nitroaniline (pNA) in eight solvents (cyclohexane, toluene, acetic acid, dichloroethane, acetone, acetonitrile, dimethylsulfoxide, and water) are investigated extensively. The second-order algebraic diagrammatic construction, ADC(2), ab initio wave function is employed with the COSMO implicit and discrete multiscale solvation methods. We found a decreasing amine group torsion angle with increased solvent polarity and a linear correlation between the polarity and ADC(2) transition energies. The first absorption band involves π → π* transitions with ICT from the amine and the benzene ring to the nitro group, increased by 4%-11% for different solvation models of water compared to the vacuum. A second band of pNA is characterized for the first time. This band is primarily a local excitation on the nitro group, including some ICT from the amine group to the benzene ring that decreases with the solvent polarity. For cyclohexane, the COSMO implicit solvent model shows the best agreement with the experiment, while the explicit model has the best agreement for water.
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Affiliation(s)
- Matheus Máximo-Canadas
- Departamento de Química, Instituto Militar de Engenharia (IME), Rio de Janeiro, Rio de Janeiro, Brazil
| | - Lucas Modesto-Costa
- Department of Physics, Federal Rural University of Rio de Janeiro, Seropédica, Rio de Janeiro, Brazil
| | - Itamar Borges
- Departamento de Química, Instituto Militar de Engenharia (IME), Rio de Janeiro, Rio de Janeiro, Brazil
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2
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Spange S, Seifert A. Solvatochromism in Mixtures of Hydrogen Bond Acceptor (HBA) Solvents with Water. Chemphyschem 2024; 25:e202400077. [PMID: 38709643 DOI: 10.1002/cphc.202400077] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Revised: 03/27/2024] [Indexed: 05/08/2024]
Abstract
The UV/Vis absorption energies νmax of Reichardt's dye B30 with respect to ET(30) and 4-nitroaniline (NA) are investigated as a function of the solvent composition Nav,z. in co-solvent/water mixtures. Nav,z. is the average molar concentration of the solvent mixture at a given solvent fraction z. The z can be the mole, the volume or the mass fraction. The co-solvents considered were acetonitrile, acetone, tetrahydrofuran, pyridine, piperidine and 2-(diethylamino)-ethanol. Acetone and acetonitrile can be expected to slightly enhance the water structure at low co-solvent concentrations. This interpretation is supported by the analysis of the refractive index as a function of the solvent composition. In general, it can be stated that the structural complexity of the binary solvent mixtures is mainly responsible for the evolution of the absorption energies ET(30) or νmax(NA) as a function of the mixture composition. In particular, the endothermic solvation of NA in co-solvent/water mixtures and its effect on the νmax(NA) is highlighted.
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Affiliation(s)
- Stefan Spange
- Department of Polymer Chemistry, Institute of Chemistry, University of Technology Chemnitz, Straße der Nationen 62, 09111, Chemnitz, Germany
| | - Andreas Seifert
- Department of Polymer Chemistry, Institute of Chemistry, University of Technology Chemnitz, Straße der Nationen 62, 09111, Chemnitz, Germany
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3
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Máximo-Canadas M, Borges I. Absorption spectra of p-nitroaniline derivatives: charge transfer effects and the role of substituents. J Mol Model 2024; 30:120. [PMID: 38564015 DOI: 10.1007/s00894-024-05917-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Accepted: 03/25/2024] [Indexed: 04/04/2024]
Abstract
CONTEXT Push-pull compounds are model systems and have numerous applications. By changing their substituents, properties are modified and new molecules for different applications can be designed. The work investigates the gas-phase electronic absorption spectra of 15 derivatives of push-pull para-nitroaniline (pNA). This molecule has applications in pharmaceuticals, azo dyes, corrosion inhibitors, and optoelectronics. Both electron-donor and electron-withdrawing groups were investigated. Employing machine learning-derived Hammett's constants σm, σm0, σR, and σI, correlations between substituents and electronic properties were obtained. Overall, the σm0 constants presented the best correlation with HOMO and LUMO energies, whereas the σR constants best agreed with the transition energy of the first band and HOMO-LUMO energy gap. Electron-donors, which have lower σR values, redshift the absorption spectrum and reduce the HOMO-LUMO energy gap. Conversely, electron-withdrawing groups (higher σR's) blueshift the spectrum and increase the energy gap. The second band maximum energies, studied here for the first time, showed no correlation with σ but tended to increase with σ. A comprehensive charge transfer (CT) analysis of the main transition of all systems was also carried out. We found that donors (lower σ's) slightly enhance the CT character of the unsubstituted pNA, whereas acceptors (higher σ's) decrease it, leading to increased local excitations within the aromatic ring. The overall CT variation is not large, except for pNA-SO2H, which considerably decreases the total CT value. We found that the strong electron donors pNA-OH, pNA-OCH3, and pNA-NH2, which have the smallest HOMO-LUMO energy gaps and lowest σ's, have potential for optoelectronic applications. The results show that none of the studied molecules is fluorescent in the gas phase. However, pNA-NH2 and pNA-COOH in cyclohexane and water reveal fluorescence upon solvation. METHODS We investigated theoretically employing the second-order algebraic diagrammatic construction (ADC(2)) ab initio wave function and time-dependent density functional theory (TDDFT) the gas-phase electronic absorption spectra of 15 derivatives of p-nitroaniline (pNA). The investigated substituents include both electron-donor (C6H5, CCH, CH3, NH2, OCH3, and OH,) and electron-withdrawing (Br, CCl3, CF3, Cl, CN, COOH, F, NO2, and SO2H) substituents.
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Affiliation(s)
- Matheus Máximo-Canadas
- Departamento de Química, Instituto Militar de Engenharia (IME), Praça General Tibúrcio, 80, Rio de Janeiro, RJ, 22290-270, Brazil
| | - Itamar Borges
- Departamento de Química, Instituto Militar de Engenharia (IME), Praça General Tibúrcio, 80, Rio de Janeiro, RJ, 22290-270, Brazil.
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4
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Suda K, Yokogawa D. Theoretical Study of Raman Intensities of p-Nitroaniline in Different Solvent Conditions by Using a Reference Interaction Site Model Self-Consistent Field Explicitly Including Constrained Spatial Electron Density Distribution. J Phys Chem B 2023; 127:11023-11030. [PMID: 38100491 DOI: 10.1021/acs.jpcb.3c04983] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2023]
Abstract
Raman spectroscopy is one of the most powerful tools to understand and characterize the states and structures of systems in several environments. To obtain highly accurate changes in Raman intensities of systems in solution, theoretical treatment, which can deal with not only the states and structures of systems but also the environment around molecules, proves to be significant. Hence, in this study, we developed the calculation of changes in Raman intensities of systems in different solvent conditions by using the reference interaction site model self-consistent field study explicitly including constrained spatial electron density distribution; this model is designed based on elements from both quantum mechanics and statistical mechanics. We showed that our calculation method could reproduce the changes in Raman intensities of p-nitroaniline (pNA) under different solvent conditions, including supercritical water, which has been observed in previous experimental studies. Based on the analysis of the calculation results, we observed that the ratio of the Raman intensity change of pNA in different solvent conditions is strongly correlated with the charge-transfer character of pNA.
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Affiliation(s)
- Kayo Suda
- Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan
| | - Daisuke Yokogawa
- Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan
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5
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Weng G, Pang A, Vlček V. Spatial Decay and Limits of Quantum Solute-Solvent Interactions. J Phys Chem Lett 2023; 14:2473-2480. [PMID: 36867592 DOI: 10.1021/acs.jpclett.3c00208] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Molecular excitations in the liquid-phase environment are renormalized by the surrounding solvent molecules. Herein, we employ the GW approximation to investigate the solvation effects on the ionization energy of phenol in various solvent environments. The electronic effects differ by up to 0.4 eV among the five investigated solvents. This difference depends on both the macroscopic solvent polarizability and the spatial decay of the solvation effects. The latter is probed by separating the electronic subspace and the GW correlation self-energy into fragments. The fragment correlation energy decays with increasing intermolecular distance and vanishes at ∼9 Å, and this pattern is independent of the type of solvent environment. The 9 Å cutoff defines an effective interacting volume within which the ionization energy shift per solvent molecule is proportional to the macroscopic solvent polarizability. Finally, we propose a simple model for computing the ionization energies of molecules in an arbitrary solvent environment.
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Affiliation(s)
- Guorong Weng
- Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106-9510, United States
| | - Amanda Pang
- Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106-9510, United States
| | - Vojtěch Vlček
- Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106-9510, United States
- Materials Department, University of California, Santa Barbara, California 93106-5050, United States
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6
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Nicoli L, Giovannini T, Cappelli C. Assessing the quality of QM/MM approaches to describe vacuo-to-water solvatochromic shifts. J Chem Phys 2022; 157:214101. [PMID: 36511555 DOI: 10.1063/5.0118664] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The performance of different quantum mechanics/molecular mechanics embedding models to compute vacuo-to-water solvatochromic shifts is investigated. In particular, both nonpolarizable and polarizable approaches are analyzed and computed results are compared to reference experimental data. We show that none of the approaches outperform the others and that errors strongly depend on the nature of the molecular transition to be described. Thus, we prove that the best choice of embedding model highly depends on the molecular system and that the use of a specific approach as a black box can lead to significant errors and, sometimes, totally wrong predictions.
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Affiliation(s)
- Luca Nicoli
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy
| | | | - Chiara Cappelli
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy
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7
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All-fluorescence white organic light-emitting diodes with record-beating power efficiencies over 130 lm W ‒1 and small roll-offs. Nat Commun 2022; 13:5154. [PMID: 36056014 PMCID: PMC9440051 DOI: 10.1038/s41467-022-32967-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Accepted: 08/25/2022] [Indexed: 11/22/2022] Open
Abstract
Improving power efficiency (PE) and reducing roll-off are of significant importance for the commercialization of white organic light-emitting diodes (WOLEDs) in consideration of energy conservation. Herein, record-beating PE of 130.7 lm W−1 and outstanding external quantum efficiency (EQE) of 31.1% are achieved in all-fluorescence two-color WOLEDs based on a simple sandwich configuration of emitting layer consisting of sky-blue and orange delayed fluorescence materials. By introducing a red fluorescence dopant, all-fluorescence three-color WOLEDs with high color rendering index are constructed based on an interlayer sensitization configuration, furnishing ultrahigh PE of 110.7 lm W−1 and EQE of 30.8%. More importantly, both two-color and three-color WOLEDs maintain excellent PEs at operating luminance with smaller roll-offs than the reported state-of-the-art WOLEDs, and further device optimization realizes outstanding comprehensive performances of low driving voltages, large luminance, high PEs and long operational lifetimes. The underlying mechanisms of the impressive device performances are elucidated by host-tuning effect and electron-trapping effect, providing useful guidance for the development of energy-conserving all-fluorescence WOLEDs. High power efficiency and low roll-off values are essential to the commercialization of white organic light-emitting diodes. Here, the authors construct all-fluorescence devices with an orange emitting layer sandwiched between two sky-blue emitting layers, achieving figure-of-merit of 130.7 lm/W.
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8
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Yoshida N, Yamaguchi T, Nakano H. Implementation of solvent polarization in three-dimensional reference interaction-site model self-consistent field theory. Chem Phys Lett 2022. [DOI: 10.1016/j.cplett.2022.139579] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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9
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Yokogawa D, Suda K. Analytical second derivatives of the free energy in solution by the reference interaction site model self-consistent field explicitly including constrained spatial electron density distribution. J Chem Phys 2021; 155:204102. [PMID: 34852465 DOI: 10.1063/5.0067248] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The application of analytical derivative methods to solution systems is important because several chemical reactions occur in solution. The reference interaction site model (RISM) is one of the solvation theories used to study solution systems and has shown good performance, especially in the polar solvent systems. Although the analytical first derivative based on the RISM coupled with quantum methods (RISM-SCF) has already been derived, the analytical second derivative has not been proposed yet. Therefore, in this study, the analytical second derivative was derived using RISM-SCF explicitly including constrained spatial electron density distribution (RISM-SCF-cSED). The performance of this method was validated with the Hessian calculations of formaldehyde and para-nitroaniline in solution, and the results demonstrated that the method accurately calculated frequency values at a small computational cost.
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Affiliation(s)
- Daisuke Yokogawa
- Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan
| | - Kayo Suda
- Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan
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10
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Moreno-Fuquen R, Arango-Daraviña K, Kennedy AR. Synthesis, spectroscopic characterization, structural studies, thermal analysis and molecular docking of N-(2-methyl-5-nitrophenyl)-4-(pyridin-2-yl)pyrimidin-2-amine, a precursor for drug design against chronic myeloid leukemia. ACTA CRYSTALLOGRAPHICA SECTION C-STRUCTURAL CHEMISTRY 2021; 77:621-632. [PMID: 34607985 DOI: 10.1107/s2053229621009487] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Accepted: 09/11/2021] [Indexed: 11/10/2022]
Abstract
The synthesis, crystal structure and spectroscopic and electronic properties of N-(2-methyl-5-nitrophenyl)-4-(pyridin-2-yl)pyrimidin-2-amine (NPPA), C16H13N5O2, a potential template for drug design against chronic myelogenous leukemia (CML), is reported. The design and construction of the target molecule were carried out starting from the guanidinium nitrate salt (previously synthesized) and the corresponding enaminone. X-ray diffraction analysis and a study of the Hirshfeld surfaces revealed important interactions between the nitro-group O atoms and the H atoms of the pyridine and pyrimidine rings. A crystalline ordering in layers, by the stacking of rings through interactions of the π-π type, was observed and confirmed by a study of the shape-index surfaces and dispersion energy calculations. Quantitative electrostatic potential studies revealed the most positive value of the molecule on regions close to the N-H groups (34.8 kcal mol-1); nevertheless, steric impediments and the planarity of the molecule do not allow the formation of hydrogen bonds from this group. This interaction is however activated when the molecule takes on a new extended conformation in the active pocket of the enzyme kinase (PDB ID 2hyy), interacting with protein residues that are fundamental in the inhibition process of CML. The most negative values of the molecule are seen in regions close to the nitro group (-35.4 and -34.0 kcal mol-1). A molecular docking study revealed an energy affinity of ΔG = -10.3 kcal mol-1 for NPPA which, despite not having a more negative value than the control molecule (Imatinib; ΔG = -12.8 kcal mol-1), shows great potential to be used as a template for new drugs against CML.
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Affiliation(s)
- Rodolfo Moreno-Fuquen
- Grupo de Cristalografia, Departamento de Quimica, Universidad del Valle, AA 25360, Santiago de Cali, Colombia
| | - Kevin Arango-Daraviña
- Grupo de Cristalografia, Departamento de Quimica, Universidad del Valle, AA 25360, Santiago de Cali, Colombia
| | - Alan R Kennedy
- WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow G1XL, UK
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11
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Zhang J, Ye S, Zhong K, Zhang Y, Chong Y, Zhao L, Zhou H, Guo S, Zhang G, Jiang B, Mukamel S, Jiang J. A Machine-Learning Protocol for Ultraviolet Protein-Backbone Absorption Spectroscopy under Environmental Fluctuations. J Phys Chem B 2021; 125:6171-6178. [PMID: 34086461 DOI: 10.1021/acs.jpcb.1c03296] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Ultraviolet (UV) absorption spectra are commonly used for characterizing the global structure of proteins. However, the theoretical interpretation of UV spectra is hindered by the large number of required expensive ab initio calculations of excited states spanning a huge conformation space. We present a machine-learning (ML) protocol for far-UV (FUV) spectra of proteins, which can predict FUV spectra of proteins with comparable accuracy to density functional theory (DFT) calculations but with 3-4 orders of magnitude reduced computational cost. It further shows excellent predictive power and transferability that can be used to probe structural mutations and protein folding pathways.
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Affiliation(s)
- Jinxiao Zhang
- Guangxi Key Laboratory of Electrochemical and Magneto-chemical Functional Materials, College of Chemistry and Bioengineering, Guilin University of Technology, Guilin 541006, China
| | - Sheng Ye
- Hefei National Laboratory for Physical Sciences at the Microscale, CAS Center for Excellence in Nanoscience, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Kai Zhong
- Hefei National Laboratory for Physical Sciences at the Microscale, CAS Center for Excellence in Nanoscience, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Yaolong Zhang
- Hefei National Laboratory for Physical Sciences at the Microscale, CAS Center for Excellence in Nanoscience, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Yuanyuan Chong
- Hefei National Laboratory for Physical Sciences at the Microscale, CAS Center for Excellence in Nanoscience, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Luyuan Zhao
- Hefei National Laboratory for Physical Sciences at the Microscale, CAS Center for Excellence in Nanoscience, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Huiting Zhou
- Hefei National Laboratory for Physical Sciences at the Microscale, CAS Center for Excellence in Nanoscience, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Sibei Guo
- Hefei National Laboratory for Physical Sciences at the Microscale, CAS Center for Excellence in Nanoscience, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Guozhen Zhang
- Hefei National Laboratory for Physical Sciences at the Microscale, CAS Center for Excellence in Nanoscience, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Bin Jiang
- Hefei National Laboratory for Physical Sciences at the Microscale, CAS Center for Excellence in Nanoscience, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Shaul Mukamel
- Departments of Chemistry and Physics & Astronomy, University of California, Irvine, California 92697, United States
| | - Jun Jiang
- Hefei National Laboratory for Physical Sciences at the Microscale, CAS Center for Excellence in Nanoscience, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, China
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12
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Goletto L, Giovannini T, Folkestad SD, Koch H. Combining multilevel Hartree–Fock and multilevel coupled cluster approaches with molecular mechanics: a study of electronic excitations in solutions. Phys Chem Chem Phys 2021; 23:4413-4425. [DOI: 10.1039/d0cp06359b] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present the coupling of different quantum-embedding approaches with a third molecular-mechanics layer, which can be either polarizable or non-polarizable.
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Affiliation(s)
- Linda Goletto
- Department of Chemistry
- Norwegian University of Science and Technology (NTNU)
- 7491 Trondheim
- Norway
| | - Tommaso Giovannini
- Department of Chemistry
- Norwegian University of Science and Technology (NTNU)
- 7491 Trondheim
- Norway
| | - Sarai D. Folkestad
- Department of Chemistry
- Norwegian University of Science and Technology (NTNU)
- 7491 Trondheim
- Norway
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13
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Lu S, Wang B. The role of distributed atomic point charges and polarizabilities of solvent molecules on one‐ and two‐photon absorption spectra of aqueous
p
‐nitroaniline. J CHIN CHEM SOC-TAIP 2020. [DOI: 10.1002/jccs.202000439] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Shih‐I Lu
- Department of Chemistry Soochow University Taipei City Taiwan
| | - Bo‐Cheng Wang
- Department of Chemistry Tamkang University New Taipei City Taiwan
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14
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Hrivnák T, Reis H, Neogrády P, Zaleśny R, Medved’ M. Accurate Nonlinear Optical Properties of Solvated para-Nitroaniline Predicted by an Electrostatic Discrete Local Field Approach. J Phys Chem B 2020; 124:10195-10209. [DOI: 10.1021/acs.jpcb.0c06046] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Tomáš Hrivnák
- Department of Physical and Theoretical Chemistry, Faculty of Natural Sciences, Comenius University, Mlynská dolina, Ilkovičova 6, SK-842 15 Bratislava, Slovakia
| | - Heribert Reis
- Institute of Chemical Biology, National Hellenic Research Foundation, Vasileos Constantinou 48, GR-11635 Athens, Greece
| | - Pavel Neogrády
- Department of Physical and Theoretical Chemistry, Faculty of Natural Sciences, Comenius University, Mlynská dolina, Ilkovičova 6, SK-842 15 Bratislava, Slovakia
| | - Robert Zaleśny
- Department of Physical and Quantum Chemistry, Faculty of Chemistry, Wroclaw University of Science and Technology, Wyb. Wyspiańskiego 27, PL-50370 Wrocław, Poland
| | - Miroslav Medved’
- Department of Chemistry, Faculty of Natural Sciences, Matej Bel University, Tajovského 40, SK-97400 Banská Bystrica, Slovakia
- Regional Centre of Advanced Technologies and Materials, Faculty of Science, Palacký University Olomouc, Šlechtitelů 27, 783 71 Olomouc, Czech Republic
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15
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Barca GMJ, Bertoni C, Carrington L, Datta D, De Silva N, Deustua JE, Fedorov DG, Gour JR, Gunina AO, Guidez E, Harville T, Irle S, Ivanic J, Kowalski K, Leang SS, Li H, Li W, Lutz JJ, Magoulas I, Mato J, Mironov V, Nakata H, Pham BQ, Piecuch P, Poole D, Pruitt SR, Rendell AP, Roskop LB, Ruedenberg K, Sattasathuchana T, Schmidt MW, Shen J, Slipchenko L, Sosonkina M, Sundriyal V, Tiwari A, Galvez Vallejo JL, Westheimer B, Włoch M, Xu P, Zahariev F, Gordon MS. Recent developments in the general atomic and molecular electronic structure system. J Chem Phys 2020; 152:154102. [PMID: 32321259 DOI: 10.1063/5.0005188] [Citation(s) in RCA: 541] [Impact Index Per Article: 135.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A discussion of many of the recently implemented features of GAMESS (General Atomic and Molecular Electronic Structure System) and LibCChem (the C++ CPU/GPU library associated with GAMESS) is presented. These features include fragmentation methods such as the fragment molecular orbital, effective fragment potential and effective fragment molecular orbital methods, hybrid MPI/OpenMP approaches to Hartree-Fock, and resolution of the identity second order perturbation theory. Many new coupled cluster theory methods have been implemented in GAMESS, as have multiple levels of density functional/tight binding theory. The role of accelerators, especially graphical processing units, is discussed in the context of the new features of LibCChem, as it is the associated problem of power consumption as the power of computers increases dramatically. The process by which a complex program suite such as GAMESS is maintained and developed is considered. Future developments are briefly summarized.
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Affiliation(s)
- Giuseppe M J Barca
- Research School of Computer Science, Australian National University, Canberra, ACT 2601, Australia
| | - Colleen Bertoni
- Argonne Leadership Computing Facility, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - Laura Carrington
- EP Analytics, 12121 Scripps Summit Dr. Ste. 130, San Diego, California 92131, USA
| | - Dipayan Datta
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, USA
| | - Nuwan De Silva
- Department of Physical and Biological Sciences, Western New England University, Springfield, Massachusetts 01119, USA
| | - J Emiliano Deustua
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, USA
| | - Dmitri G Fedorov
- Research Center for Computational Design of Advanced Functional Materials (CD-FMat), National Institute of Advanced Industrial Science and Technology (AIST), Umezono 1-1-1, Tsukuba 305-8568, Japan
| | - Jeffrey R Gour
- Microsoft, 15590 NE 31st St., Redmond, Washington 98052, USA
| | - Anastasia O Gunina
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, USA
| | - Emilie Guidez
- Department of Chemistry, University of Colorado Denver, Denver, Colorado 80217, USA
| | - Taylor Harville
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, USA
| | - Stephan Irle
- Computational Science and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, USA
| | - Joe Ivanic
- Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, USA
| | - Karol Kowalski
- Physical Sciences Division, Battelle, Pacific Northwest National Laboratory, K8-91, P.O. Box 999, Richland, Washington 99352, USA
| | - Sarom S Leang
- EP Analytics, 12121 Scripps Summit Dr. Ste. 130, San Diego, California 92131, USA
| | - Hui Li
- Department of Chemistry, University of Nebraska, Lincoln, Nebraska 68588, USA
| | - Wei Li
- School of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic Chemistry of Ministry of Education, Institute of Theoretical and Computational Chemistry, Nanjing University, Nanjing 210023, People's Republic of China
| | - Jesse J Lutz
- Center for Computing Research, Sandia National Laboratories, Albuquerque, New Mexico 87185, USA
| | - Ilias Magoulas
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, USA
| | - Joani Mato
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, USA
| | - Vladimir Mironov
- Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory 1/3, Moscow 119991, Russian Federation
| | - Hiroya Nakata
- Kyocera Corporation, Research Institute for Advanced Materials and Devices, 3-5-3 Hikaridai Seika-cho, Souraku-gun, Kyoto 619-0237, Japan
| | - Buu Q Pham
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, USA
| | - Piotr Piecuch
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, USA
| | - David Poole
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, USA
| | - Spencer R Pruitt
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, USA
| | - Alistair P Rendell
- Research School of Computer Science, Australian National University, Canberra, ACT 2601, Australia
| | - Luke B Roskop
- Cray Inc., a Hewlett Packard Enterprise Company, 2131 Lindau Ln #1000, Bloomington, Minnesota 55425, USA
| | - Klaus Ruedenberg
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, USA
| | | | - Michael W Schmidt
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, USA
| | - Jun Shen
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, USA
| | - Lyudmila Slipchenko
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, USA
| | - Masha Sosonkina
- Department of Computational Modeling and Simulation Engineering, Old Dominion University, Norfolk, Virginia 23529, USA
| | - Vaibhav Sundriyal
- Department of Computational Modeling and Simulation Engineering, Old Dominion University, Norfolk, Virginia 23529, USA
| | - Ananta Tiwari
- EP Analytics, 12121 Scripps Summit Dr. Ste. 130, San Diego, California 92131, USA
| | - Jorge L Galvez Vallejo
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, USA
| | - Bryce Westheimer
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, USA
| | - Marta Włoch
- 530 Charlesina Dr., Rochester, Michigan 48306, USA
| | - Peng Xu
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, USA
| | - Federico Zahariev
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, USA
| | - Mark S Gordon
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, USA
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16
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Parida SR, Mohapatra H, Priyadarshini S. Interaction of Water at the Hydrophobic Interface of Alkyl Group of Alcohol with
p
‐Nitro‐Aniline Charge Transfer State. ChemistrySelect 2020. [DOI: 10.1002/slct.201904476] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Smruti Ranjana Parida
- Department of ChemistryInstitute of Technical Education & ResearchSiksha ‘O' Anusandhana (Deemed to be University) Bhubaneswar Odisha India
| | - Himansu Mohapatra
- Department of ChemistryInstitute of Technical Education & ResearchSiksha ‘O' Anusandhana (Deemed to be University) Bhubaneswar Odisha India
| | - Snigdhashree Priyadarshini
- Department of ChemistryInstitute of Technical Education & ResearchSiksha ‘O' Anusandhana (Deemed to be University) Bhubaneswar Odisha India
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17
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Giovannini T, Riso RR, Ambrosetti M, Puglisi A, Cappelli C. Electronic transitions for a fully polarizable QM/MM approach based on fluctuating charges and fluctuating dipoles: Linear and corrected linear response regimes. J Chem Phys 2019; 151:174104. [PMID: 31703497 DOI: 10.1063/1.5121396] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Abstract
The fully polarizable Quantum Mechanics/Molecular Mechanics (QM/MM) approach based on fluctuating charges and fluctuating dipoles, named QM/FQFμ [T. Giovannini et al., J. Chem. Theory Comput. 15, 2233 (2019)], is extended to the calculation of vertical excitation energies of solvated molecular systems. Excitation energies are defined within two different solvation regimes, i.e., linear response (LR), where the response of the MM portion is adjusted to the QM transition density, and corrected-Linear Response (cLR) in which the MM response is adjusted to the relaxed QM density, thus being able to account for charge equilibration in the excited state. The model, which is specified in terms of three physical parameters (electronegativity, chemical hardness, and polarizability) is applied to vacuo-to-water solvatochromic shifts of aqueous solutions of para-nitroaniline, pyridine, and pyrimidine. The results show a good agreement with their experimental counterparts, thus highlighting the potentialities of this approach.
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Affiliation(s)
- Tommaso Giovannini
- Department of Chemistry, Norwegian University of Science and Technology, 7491 Trondheim, Norway
| | | | | | | | - Chiara Cappelli
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy
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18
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De Silva N, Adreance MA, Gordon MS. Application of a semi‐empirical dispersion correction for modeling water clusters. J Comput Chem 2018; 40:310-315. [DOI: 10.1002/jcc.25596] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2018] [Revised: 08/17/2018] [Accepted: 08/20/2018] [Indexed: 11/06/2022]
Affiliation(s)
- Nuwan De Silva
- Department of Physical and Biological Sciences Western New England University Springfield Massachusetts 01119
| | - Matthew A. Adreance
- Department of Physical and Biological Sciences Western New England University Springfield Massachusetts 01119
| | - Mark S. Gordon
- Department of Chemistry Iowa State University Ames Iowa 50011
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19
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Lu SI, Gao LT. Calculations of Electronic Excitation Energies and Excess Electric Dipole Moments of Solvated p-Nitroaniline with the EOM-CCSD-PCM Method. J Phys Chem A 2018; 122:6062-6070. [DOI: 10.1021/acs.jpca.8b02321] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Shih-I Lu
- Department of Chemistry, Soochow University, No. 70 Lin-Shih Road, Taipei City 111, Taiwan
| | - Li-Ting Gao
- Department of Chemistry, Soochow University, No. 70 Lin-Shih Road, Taipei City 111, Taiwan
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20
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Yang J, Li AY. Hydrogen bond strengthening between o-nitroaniline and formaldehyde in electronic excited states: A theoretical study. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 199:194-201. [PMID: 29605783 DOI: 10.1016/j.saa.2018.03.062] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2018] [Revised: 03/16/2018] [Accepted: 03/23/2018] [Indexed: 06/08/2023]
Abstract
To study the hydrogen bonds upon photoexcited, the time dependent density function method (TD DFT) was performed to investigate the excited state hydrogen bond properties of between o-nitroaniline (ONA) and formaldehyde (CH2O). The optimized structures of the complex and the monomers both in the ground state and the electronically excited states are calculated using DFT and TD DFT method respectively. Quantum chemical calculations of the electronic and vibrational absorption spectra are also carried out by TD DFT method at the different level. The complex ONA⋯CH2O forms the intramolecular hydrogen bond and intermolecular hydrogen bonds. Since the strength of hydrogen bonds can be measured by studying the vibrational absorption spectra of the characteristic groups on the hydrogen bonding acceptor and donor, it evidently confirms that the hydrogen bonds is strengthened in the S1/S2/T1 excited states upon photoexcitation. As a result, the hydrogen bonds cause that the CH stretch frequency of the proton donor CH2O has a blue shift, and the electron excitations leads to a frequency red shift of NO and NH stretch modes in the o-nitroaniline(ONA) and a small frequency blue shift of CH stretch mode in the formaldehyde(CH2O) in the S1 and S2 excited states. The excited states S1, S2 and T1 are locally excited states where only the ONA moiety is excited, but the CH2O moiety remains in its ground state.
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Affiliation(s)
- Juan Yang
- School of Chemistry and Chemical Engineering, Southwest University, Tiansheng Road No. 1, Chongqing 400715, People's Republic of China
| | - An Yong Li
- School of Chemistry and Chemical Engineering, Southwest University, Tiansheng Road No. 1, Chongqing 400715, People's Republic of China.
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21
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Ding F, Tsuchiya T, Manby FR, Miller TF. Linear-Response Time-Dependent Embedded Mean-Field Theory. J Chem Theory Comput 2017; 13:4216-4227. [DOI: 10.1021/acs.jctc.7b00666] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Feizhi Ding
- Division
of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
| | - Takashi Tsuchiya
- Centre
for Computational Chemistry, School of Chemistry, University of Bristol, Bristol BS8 1TS, United Kingdom
| | - Frederick R. Manby
- Centre
for Computational Chemistry, School of Chemistry, University of Bristol, Bristol BS8 1TS, United Kingdom
| | - Thomas F. Miller
- Division
of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
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22
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Ming MJ, Xu LK, Wang F, Bi TJ, Li XY. Theoretical study on electronic excitation spectra: A matrix form of numerical algorithm for spectral shift. Chem Phys 2017. [DOI: 10.1016/j.chemphys.2017.05.016] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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23
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Cabral BJ. Electron binding energies and the fundamental gap of a push-pull dye in a polar environment: p-nitroaniline in liquid water. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2016.11.017] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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24
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Yanai K, Ishimura K, Nakayama A, Schmidt MW, Gordon MS, Hasegawa JY. Electronic Polarization Effect of the Water Environment in Charge-Separated Donor-Acceptor Systems: An Effective Fragment Potential Model Study. J Phys Chem A 2016; 120:10273-10280. [PMID: 27966940 DOI: 10.1021/acs.jpca.6b10552] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The electronic polarization (POL) of the surrounding environment plays a crucial role in the energetics of charge-separated systems. Here, the mechanism of POL in charge-separated systems is studied using a combined quantum mechanical and effective fragment potential (QM/EFP) method. In particular, the POL effect caused by charge separation (CS) is investigated at the atomic level by decomposition into the POL at each polarizability point. The relevance of the electric field generated by the CS is analyzed in detail. The model systems investigated are Na+-Cl- and guanine-thymine solvated in water. The dominant part of the POL arises from solvent molecules close to the donor (D) and acceptor (A) units. At short D-A distances, the electric field shows both positive and negative interferences. The former case enhances the POL energy. At longer distances, the interference is weakened, and the local electric field determines the POL energy.
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Affiliation(s)
- Kazuma Yanai
- Institute for Catalysis, Hokkaido University , Kita 21, Nishi 10, Kita-ku, Sapporo 001-0021, Japan
| | - Kazuya Ishimura
- Department of Theoretical and Computational Molecular Science, Institute for Molecular Science , 38 Nishigo-Naka, Myodaiji, Okazaki 444-8585, Japan
| | - Akira Nakayama
- Institute for Catalysis, Hokkaido University , Kita 21, Nishi 10, Kita-ku, Sapporo 001-0021, Japan
| | - Michael W Schmidt
- Department of Chemistry and Ames Laboratory, Iowa State University , Ames, Iowa 50011, United States
| | - Mark S Gordon
- Department of Chemistry and Ames Laboratory, Iowa State University , Ames, Iowa 50011, United States
| | - Jun-Ya Hasegawa
- Institute for Catalysis, Hokkaido University , Kita 21, Nishi 10, Kita-ku, Sapporo 001-0021, Japan.,JST-CREST , 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, Japan
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25
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Cabral BJC, Coutinho K, Canuto S. A First-Principles Approach to the Dynamics and Electronic Properties of p-Nitroaniline in Water. J Phys Chem A 2016; 120:3878-87. [DOI: 10.1021/acs.jpca.6b01797] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Benedito J. Costa Cabral
- Departamento
de Química e Bioquímica and Grupo de Física Matemática
da Universidade de Lisboa, Faculdade de Ciências da Universidade de Lisboa, Campo Grande 1749-016 Lisboa, Portugal
| | - Kaline Coutinho
- Instituto de Física da Universidade de São Paulo, 05508-090 Cidade Universitária, São
Paulo, São Paulo Brazil
| | - Sylvio Canuto
- Instituto de Física da Universidade de São Paulo, 05508-090 Cidade Universitária, São
Paulo, São Paulo Brazil
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26
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Rinkevicius Z, Sandberg JAR, Li X, Linares M, Norman P, Ågren H. Hybrid Complex Polarization Propagator/Molecular Mechanics Method for Heterogeneous Environments. J Chem Theory Comput 2016; 12:2661-7. [DOI: 10.1021/acs.jctc.6b00255] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Zilvinas Rinkevicius
- Division
of Theoretical Chemistry and Biology, School of Biotechnology, KTH Royal Institute of Technology, SE-106 91 Stockholm, Sweden
- Swedish
e-Science Research Centre, KTH Royal Institute of Technology, SE-104 50 Stockholm, Sweden
| | - Jaime A. R. Sandberg
- Division
of Theoretical Chemistry and Biology, School of Biotechnology, KTH Royal Institute of Technology, SE-106 91 Stockholm, Sweden
| | - Xin Li
- Division
of Theoretical Chemistry and Biology, School of Biotechnology, KTH Royal Institute of Technology, SE-106 91 Stockholm, Sweden
| | - Mathieu Linares
- Department
of Physics, Chemistry and Biology, Linköping University, SE-581 83 Linköping, Sweden
- Swedish
e-Science Research Centre, Linköping University, SE-581 83 Linköping, Sweden
| | - Patrick Norman
- Department
of Physics, Chemistry and Biology, Linköping University, SE-581 83 Linköping, Sweden
| | - Hans Ågren
- Division
of Theoretical Chemistry and Biology, School of Biotechnology, KTH Royal Institute of Technology, SE-106 91 Stockholm, Sweden
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27
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Nakano H, Sato H. An Ab Initio QM/MM-Based Approach to Efficiently Evaluate Vertical Excitation Energies in Condensed Phases Including the Nonequilibrium Solvation Effect. J Phys Chem B 2015; 120:1670-8. [DOI: 10.1021/acs.jpcb.5b08455] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Hiroshi Nakano
- Department
of Molecular Engineering, Kyoto University, Kyoto 615-8510, Japan
- Elements
Strategy Initiative for Catalysts and Batteries, Kyoto University, Kyoto 615-8510, Japan
| | - Hirofumi Sato
- Department
of Molecular Engineering, Kyoto University, Kyoto 615-8510, Japan
- Elements
Strategy Initiative for Catalysts and Batteries, Kyoto University, Kyoto 615-8510, Japan
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28
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Abstract
For the modeling of solvatochromism with an explicit representation of the solvent molecules, the quality of preceding molecular dynamics simulations is crucial. Therefore, the possibility to apply force fields which are derived with as little empiricism as possible seems desirable. Such an approach is tested here by exploiting the sensitive solvatochromism of p-nitroaniline, and the use of reliable excitation energies based on approximate second-order coupled cluster results within a polarizable embedding scheme. The quality of the various MD settings for four different solvents, water, methanol, ethanol, and dichloromethane, is assessed. In general, good agreement with the experiment is observed when polarizable force fields and special treatment of hydrogen bonding are applied.
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Affiliation(s)
- Tobias Schwabe
- Center for Bioinformatics and Physical Chemistry Institute, University of Hamburg, Bundesstraße 43, D-20146 Hamburg, Germany
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29
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Cabral BJC, Rivelino R, Coutinho K, Canuto S. Probing Lewis Acid-Base Interactions with Born-Oppenheimer Molecular Dynamics: The Electronic Absorption Spectrum of p-Nitroaniline in Supercritical CO2. J Phys Chem B 2015; 119:8397-405. [PMID: 26039255 DOI: 10.1021/acs.jpcb.5b02902] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The structure and dynamics of p-nitroaniline (PNA) in supercritical CO2 (scCO2) at T = 315 K and ρ = 0.81 g cm(-3) are investigated by carrying out Born-Oppenheimer molecular dynamics, and the electronic absorption spectrum in scCO2 is determined by time dependent density functional theory. The structure of the PNA-scCO2 solution illustrates the role played by Lewis acid-base (LA-LB) interactions. In comparison with isolated PNA, the ν(N-O) symmetric and asymmetric stretching modes of PNA in scCO2 are red-shifted by -17 and -29 cm(-1), respectively. The maximum of the charge transfer (CT) absorption band of PNA in scSCO2 is at 3.9 eV, and the predicted red-shift of the π → π* electronic transition relative to the isolated gas-phase PNA molecule reproduces the experimental value of -0.35 eV. An analysis of the relationship between geometry distortions and excitation energies of PNA in scCO2 shows that the π → π* CT transition is very sensitive to changes of the N-O bond distance, strongly indicating a correlation between vibrational and electronic solvatochromism driven by LA-LB interactions. Despite the importance of LA-LB interactions to explain the solvation of PNA in scCO2, the red-shift of the CT band is mainly determined by electrostatic interactions.
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Affiliation(s)
- Benedito J Costa Cabral
- †Grupo de Física Matemática da Universidade de Lisboa, Av. Prof. Gama Pinto, 1049-003 Lisboa, Portugal.,‡Departamento de Química e Bioquímica, Faculdade de Ciências, Universidade de Lisboa, Av. Professor Gama Pinto 2, 1649-003 Lisboa, Portugal
| | - Roberto Rivelino
- §Instituto de Física da Universidade Federal da Bahia, Campus Universitário de Ondina, CEP 40210-340 Salvador, Bahia, Brazil
| | - Kaline Coutinho
- ∥Instituto de Física da Universidade de São Paulo, CP 66318, 05314-970 São Paulo, SP, Brazil
| | - Sylvio Canuto
- ∥Instituto de Física da Universidade de São Paulo, CP 66318, 05314-970 São Paulo, SP, Brazil
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30
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Zahariev F, Gordon MS. Nonlinear response time-dependent density functional theory combined with the effective fragment potential method. J Chem Phys 2015; 140:18A523. [PMID: 24832331 DOI: 10.1063/1.4867271] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023] Open
Abstract
This work presents an extension of the linear response TDDFT/EFP method to the nonlinear-response regime together with the implementation of nonlinear-response TDDFT/EFP in the quantum-chemistry computer package GAMESS. Included in the new method is the ability to calculate the two-photon absorption cross section and to incorporate solvent effects via the EFP method. The nonlinear-response TDDFT/EFP method is able to make correct qualitative predictions for both gas phase values and aqueous solvent shifts of several important nonlinear properties.
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Affiliation(s)
- Federico Zahariev
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, USA
| | - Mark S Gordon
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, USA
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31
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Gao Y, Wu HQ, Sun SL, Xu HL, Su ZM. One lithium atom binding with P-nitroaniline: lithium salts or lithium electrides? J Mol Model 2015; 21:23. [PMID: 25620420 DOI: 10.1007/s00894-014-2560-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2014] [Accepted: 12/07/2014] [Indexed: 11/25/2022]
Abstract
Recently, both lithium (Li) salts and Li electrides formed by one Li atom interacting with ligand complexes, have been widely investigated. An interesting question emerges: is the configuration of one Li atom interacting with ligand complexes a Li salt or electride? In the present work, four configurations n-Li-PNA (n = 1-4) were obtained by binding one Li atom with the p-nitroaniline (PNA) at different positions to explore this question. The results show that 1-Li-PNA and 2-Li-PNA are typical Li salts, and 4-Li-PNA is a typical Li electride. Significantly, 3-Li-PNA possesses both characteristics of Li salt and electride. At the same time, 3-Li-PNA has the largest first hyperpolarizability (2.9 × 10(6) au) by ROMP2 method compared with the other three configurations. Furthermore, the first hyperpolarizability of 3-Li-PNA is about 2600 times larger than that of PNA. Further, the vertical ionization potential (VIP) and interaction energy (E int) indicate that 3-Li-PNA is less stable than 1-Li-PNA and 2-Li-PNA (Li salts), but is more stable than 4-Li-PNA (Li electrides).
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Affiliation(s)
- Ying Gao
- Institute of Functional Material Chemistry, Faculty of Chemistry, Northeast Normal University, Changchun, 130024, Jilin, People's Republic of China
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32
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Electronic Properties in Supercritical Fluids. ADVANCES IN QUANTUM CHEMISTRY 2015. [DOI: 10.1016/bs.aiq.2015.03.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register]
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33
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Eilmes A. Solvatochromic probe in molecular solvents: implicit versus explicit solvent model. Theor Chem Acc 2014. [DOI: 10.1007/s00214-014-1538-x] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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34
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Li J, Ren HS, Ma JY, Li XY. Spectral Shift of π→π* Transition forp-Nitroaniline Based on a New Expression of Nonequilibrium Solvation Energy. CHINESE J CHEM PHYS 2014. [DOI: 10.1063/1674-0068/27/02/181-188] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
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35
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Hidalgo M, Rivelino R, Canuto S. Origin of the Red Shift for the Lowest Singlet π → π* Charge-Transfer Absorption of p-Nitroaniline in Supercritical CO2. J Chem Theory Comput 2014; 10:1554-62. [DOI: 10.1021/ct401081e] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Marcelo Hidalgo
- Instituto
de Física, Universidade de São Paulo, CP 66318, 05314-970 São Paulo, SP Brazil
| | - Roberto Rivelino
- Instituto
de Física, Universidade de São Paulo, CP 66318, 05314-970 São Paulo, SP Brazil
- Instituto
de Física, Universidade Federal da Bahia, 40210-340 Salvador, Bahia Brazil
| | - Sylvio Canuto
- Instituto
de Física, Universidade de São Paulo, CP 66318, 05314-970 São Paulo, SP Brazil
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36
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Inclusion of cybotactic effect in the theoretical modeling of absorption spectra of liquid-state systems with perturbed matrix method and molecular dynamics simulations: the UV–Vis absorption spectrum of para-nitroaniline as a case study. Theor Chem Acc 2014. [DOI: 10.1007/s00214-014-1478-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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37
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Ghosh D. Perturbative approximation to hybrid equation of motion coupled cluster/effective fragment potential method. J Chem Phys 2014; 140:094101. [DOI: 10.1063/1.4866838] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
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38
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Gordon MS, Smith QA, Xu P, Slipchenko LV. Accurate first principles model potentials for intermolecular interactions. Annu Rev Phys Chem 2013; 64:553-78. [PMID: 23561011 DOI: 10.1146/annurev-physchem-040412-110031] [Citation(s) in RCA: 133] [Impact Index Per Article: 12.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The general effective fragment potential (EFP) method provides model potentials for any molecule that is derived from first principles, with no empirically fitted parameters. The EFP method has been interfaced with most currently used ab initio single-reference and multireference quantum mechanics (QM) methods, ranging from Hartree-Fock and coupled cluster theory to multireference perturbation theory. The most recent innovations in the EFP model have been to make the computationally expensive charge transfer term much more efficient and to interface the general EFP dispersion and exchange repulsion interactions with QM methods. Following a summary of the method and its implementation in generally available computer programs, these most recent new developments are discussed.
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Affiliation(s)
- Mark S Gordon
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, USA.
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39
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Pozzi CG, Fantoni AC, Goeta AE, de Matos Gomes E, McIntyre GJ, Punte G. On the use of crystal vibrational modes in the estimation of the anisotropic displacement parameters of hydrogen atoms in molecular crystals: para-Nitroaniline as a test case. Chem Phys 2013. [DOI: 10.1016/j.chemphys.2013.07.004] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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40
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De Silva N, Willow SY, Gordon MS. Solvent induced shifts in the UV spectrum of amides. J Phys Chem A 2013; 117:11847-55. [PMID: 23758065 DOI: 10.1021/jp402999p] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Solvent effects on the electronic spectra of formamide and trans-N-methylacetamide are studied using four different levels of theory: singly excited configuration interaction (CIS), equations of motion coupled-cluster theory with singles and doubles (EOM-CCSD), completely renormalized coupled-cluster theory with singles and doubles with perturbative triple excitations (CR-EOM-CCSD(T)), and time-dependent density functional theory (TDDFT), employing small clusters of water molecules. The simulated electronic spectrum is obtained via molecular dynamics simulations with 100 waters modeled with the effective fragment potential method and exhibits a blue-shift and red-shift, respectively, for the n → π* and πnb → π* vertical excitation energies, in good agreement with the experimental electronic spectra of amides.
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Affiliation(s)
- Nuwan De Silva
- Department of Chemistry, Iowa State University , Ames, Iowa 50011, United States
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Eriksen JJ, Sauer SP, Mikkelsen KV, Christiansen O, Jensen HJA, Kongsted J. Failures of TDDFT in describing the lowest intramolecular charge-transfer excitation in para-nitroaniline. Mol Phys 2013. [DOI: 10.1080/00268976.2013.793841] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Janus J. Eriksen
- a Department of Chemistry , University of Copenhagen , Universitetsparken 5, Copenhagen Ø , DK-2100 , Denmark
| | - Stephan P.A. Sauer
- a Department of Chemistry , University of Copenhagen , Universitetsparken 5, Copenhagen Ø , DK-2100 , Denmark
| | - Kurt V. Mikkelsen
- a Department of Chemistry , University of Copenhagen , Universitetsparken 5, Copenhagen Ø , DK-2100 , Denmark
| | - Ove Christiansen
- b Center for Oxygen Microscopy and Imaging, Department of Chemistry , Aarhus University , Langelandsgade 140, Aarhus C , DK-8000 , Denmark
| | - Hans Jørgen Aa. Jensen
- c Department of Physics, Chemistry and Pharmacy , University of Southern Denmark , Campusvej 55, Odense M , DK-5230 , Denmark
| | - Jacob Kongsted
- c Department of Physics, Chemistry and Pharmacy , University of Southern Denmark , Campusvej 55, Odense M , DK-5230 , Denmark
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Ghosh D, Kosenkov D, Vanovschi V, Flick J, Kaliman I, Shao Y, Gilbert AT, Krylov AI, Slipchenko LV. Effective fragment potential method inQ-CHEM: A guide for users and developers. J Comput Chem 2013; 34:1060-70. [DOI: 10.1002/jcc.23223] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2012] [Revised: 12/05/2012] [Accepted: 12/08/2012] [Indexed: 12/11/2022]
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43
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Gaenko A, Windus TL, Sosonkina M, Gordon MS. Design and Implementation of Scientific Software Components to Enable Multiscale Modeling: The Effective Fragment Potential (QM/EFP) Method. J Chem Theory Comput 2012; 9:222-31. [DOI: 10.1021/ct300614z] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Alexander Gaenko
- Ames Laboratory, Iowa State University, Ames, Iowa 50011, United States
| | - Theresa L. Windus
- Ames Laboratory, Iowa State University, Ames, Iowa 50011, United States
| | - Masha Sosonkina
- Ames Laboratory, Iowa State University, Ames, Iowa 50011, United States
| | - Mark S. Gordon
- Ames Laboratory, Iowa State University, Ames, Iowa 50011, United States
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44
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Minezawa N, Gordon MS. Optimizing conical intersections of solvated molecules: The combined spin-flip density functional theory/effective fragment potential method. J Chem Phys 2012; 137:034116. [DOI: 10.1063/1.4734314] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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45
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Eriksen JJ, Sauer SPA, Mikkelsen KV, Jensen HJA, Kongsted J. On the importance of excited state dynamic response electron correlation in polarizable embedding methods. J Comput Chem 2012; 33:2012-22. [DOI: 10.1002/jcc.23032] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2012] [Revised: 04/24/2012] [Accepted: 05/14/2012] [Indexed: 01/03/2023]
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