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For: Ballard AJ, Dellago C. Toward the mechanism of ionic dissociation in water. J Phys Chem B 2012;116:13490-7. [PMID: 23078105 PMCID: PMC3557935 DOI: 10.1021/jp309300b] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Number Cited by Other Article(s)
1
Moon S, Limmer DT. Enhanced ClNO2 Formation at the Interface of Sea-Salt Aerosol. J Phys Chem Lett 2024:9466-9473. [PMID: 39254177 DOI: 10.1021/acs.jpclett.4c02289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/11/2024]
2
France-Lanord A, Vroylandt H, Salanne M, Rotenberg B, Saitta AM, Pietrucci F. Data-Driven Path Collective Variables. J Chem Theory Comput 2024;20:3069-3084. [PMID: 38619076 DOI: 10.1021/acs.jctc.4c00123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/16/2024]
3
Herringer NSM, Dasetty S, Gandhi D, Lee J, Ferguson AL. Permutationally Invariant Networks for Enhanced Sampling (PINES): Discovery of Multimolecular and Solvent-Inclusive Collective Variables. J Chem Theory Comput 2024;20:178-198. [PMID: 38150421 DOI: 10.1021/acs.jctc.3c00923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2023]
4
Hoang Ngoc Minh T, Kim J, Pireddu G, Chubak I, Nair S, Rotenberg B. Electrical noise in electrolytes: a theoretical perspective. Faraday Discuss 2023;246:198-224. [PMID: 37409620 DOI: 10.1039/d3fd00026e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/13/2023]
5
Water-Mediated attraction between Like-charged species involved in calcium phosphate nucleation. J Mol Liq 2023. [DOI: 10.1016/j.molliq.2023.121585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/12/2023]
6
Jung H, Covino R, Arjun A, Leitold C, Dellago C, Bolhuis PG, Hummer G. Machine-guided path sampling to discover mechanisms of molecular self-organization. NATURE COMPUTATIONAL SCIENCE 2023;3:334-345. [PMID: 38177937 PMCID: PMC10766509 DOI: 10.1038/s43588-023-00428-z] [Citation(s) in RCA: 29] [Impact Index Per Article: 29.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Accepted: 03/10/2023] [Indexed: 01/06/2024]
7
Gao A, Remsing RC, Weeks JD. Local Molecular Field Theory for Coulomb Interactions in Aqueous Solutions. J Phys Chem B 2023;127:809-821. [PMID: 36669139 DOI: 10.1021/acs.jpcb.2c06988] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
8
Brünig F, Daldrop JO, Netz RR. Pair-Reaction Dynamics in Water: Competition of Memory, Potential Shape, and Inertial Effects. J Phys Chem B 2022;126:10295-10304. [PMID: 36473702 PMCID: PMC9761671 DOI: 10.1021/acs.jpcb.2c05923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Revised: 11/11/2022] [Indexed: 12/12/2022]
9
Hasyim MR, Batton CH, Mandadapu KK. Supervised learning and the finite-temperature string method for computing committor functions and reaction rates. J Chem Phys 2022;157:184111. [DOI: 10.1063/5.0102423] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]  Open
10
Yang X, Ji M, Zhang C, Yang X, Xu Z. Physical insight into the entropy-driven ion association. J Comput Chem 2022;43:1621-1632. [PMID: 35801676 DOI: 10.1002/jcc.26963] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2022] [Revised: 06/15/2022] [Accepted: 06/20/2022] [Indexed: 11/09/2022]
11
Neumann J, Schwierz N. Artificial Intelligence Resolves Kinetic Pathways of Magnesium Binding to RNA. J Chem Theory Comput 2022;18:1202-1212. [PMID: 35084846 PMCID: PMC8830046 DOI: 10.1021/acs.jctc.1c00752] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
12
Wang D, Zhao R, Weeks JD, Tiwary P. Influence of Long-Range Forces on the Transition States and Dynamics of NaCl Ion-Pair Dissociation in Water. J Phys Chem B 2022;126:545-551. [PMID: 34985884 DOI: 10.1021/acs.jpcb.1c09454] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
13
Anand S, Swami P, Goel G, Gupta S. Zwitterions for impedance spectroscopy: The new buffers in town. Anal Chim Acta 2021;1166:338547. [PMID: 34022999 DOI: 10.1016/j.aca.2021.338547] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Revised: 04/03/2021] [Accepted: 04/05/2021] [Indexed: 11/29/2022]
14
Singh D, Mondal K, Chaudhury S. Effect of Memory and Inertial Contribution on Transition-Time Distributions: Theory and Simulations. J Phys Chem B 2021;125:4536-4545. [PMID: 33900087 DOI: 10.1021/acs.jpcb.1c00173] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
15
Bolhuis PG, Swenson DWH. Transition Path Sampling as Markov Chain Monte Carlo of Trajectories: Recent Algorithms, Software, Applications, and Future Outlook. ADVANCED THEORY AND SIMULATIONS 2021. [DOI: 10.1002/adts.202000237] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
16
Niblett SP, Limmer DT. Ion Dissociation Dynamics in an Aqueous Premelting Layer. J Phys Chem B 2021;125:2174-2181. [DOI: 10.1021/acs.jpcb.0c11286] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
17
Zhang C, Giberti F, Sevgen E, de Pablo JJ, Gygi F, Galli G. Dissociation of salts in water under pressure. Nat Commun 2020;11:3037. [PMID: 32546791 PMCID: PMC7298052 DOI: 10.1038/s41467-020-16704-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Accepted: 05/15/2020] [Indexed: 11/09/2022]  Open
18
Ramamoorthy RK, Levesque M, Belloni L, Carriere D. Structure Factor of EuCl3 Aqueous Solutions via Coupled Molecular Dynamics Simulations and Integral Equations. J Phys Chem B 2020;124:1787-1793. [PMID: 32026687 DOI: 10.1021/acs.jpcb.9b11537] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
19
Short solvent model for ion correlations and hydrophobic association. Proc Natl Acad Sci U S A 2020;117:1293-1302. [PMID: 31911472 DOI: 10.1073/pnas.1918981117] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
20
Crundwell FK. The impact of surface charge on the ionic dissociation of common salt (NaCl). Chem Eng Sci 2019. [DOI: 10.1016/j.ces.2019.04.050] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
21
Schile AJ, Limmer DT. Rate constants in spatially inhomogeneous systems. J Chem Phys 2019;150:191102. [DOI: 10.1063/1.5092837] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
22
Oh MI, Gupta M, Weaver DF. Understanding Water Structure in an Ion-Pair Solvation Shell in the Vicinity of a Water/Membrane Interface. J Phys Chem B 2019;123:3945-3954. [DOI: 10.1021/acs.jpcb.9b01331] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
23
Blasius J, Ingenmey J, Perlt E, von Domaros M, Hollóczki O, Kirchner B. Predicting Mole-Fraction-Dependent Dissociation for Weak Acids. Angew Chem Int Ed Engl 2019;58:3212-3216. [PMID: 30589171 DOI: 10.1002/anie.201811839] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2018] [Revised: 12/12/2018] [Indexed: 11/10/2022]
24
Blasius J, Ingenmey J, Perlt E, von Domaros M, Hollóczki O, Kirchner B. Dissoziation schwacher Säuren über den gesamten Molenbruchbereich. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201811839] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
25
On the ion‐pair dissociation mechanisms in the small NaCl·(H 2 O) 6 cluster: A perspective from reaction path search calculations. J Comput Chem 2018;39:1835-1842. [DOI: 10.1002/jcc.25227] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2018] [Revised: 03/24/2018] [Accepted: 03/27/2018] [Indexed: 11/07/2022]
26
Salanne M, Tazi S, Vuilleumier R, Rotenberg B. Ca2+ -Cl- Association in Water Revisited: the Role of Cation Hydration. Chemphyschem 2017;18:2807-2811. [PMID: 28510283 DOI: 10.1002/cphc.201700286] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2017] [Revised: 05/16/2017] [Indexed: 11/08/2022]
27
Alaghemandi M, Koller V, Green JR. Nonexponential kinetics of ion pair dissociation in electrofreezing water. Phys Chem Chem Phys 2017;19:26396-26402. [PMID: 28944386 DOI: 10.1039/c7cp04572g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
28
Microscopic dynamics of charge separation at the aqueous electrochemical interface. Proc Natl Acad Sci U S A 2017;114:13374-13379. [PMID: 28698368 DOI: 10.1073/pnas.1700093114] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
29
Yonetani Y. Solvent-coordinate free-energy landscape view of water-mediated ion-pair dissociation. Mol Phys 2017. [DOI: 10.1080/00268976.2017.1342006] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
30
Shi Y, Beck T. Deconstructing Free Energies in the Law of Matching Water Affinities. J Phys Chem B 2017;121:2189-2201. [DOI: 10.1021/acs.jpcb.7b00104] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
31
Carof A, Salanne M, Charpentier T, Rotenberg B. On the microscopic fluctuations driving the NMR relaxation of quadrupolar ions in water. J Chem Phys 2016;143:194504. [PMID: 26590539 DOI: 10.1063/1.4935496] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
32
Mehandzhiyski AY, Grimes BA. Calculation of the probability for ionic association and dissociation reactions by molecular dynamics and umbrella sampling. Mol Phys 2016. [DOI: 10.1080/00268976.2016.1155776] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
33
Duignan TT, Parsons DF, Ninham BW. A continuum solvent model of ion-ion interactions in water. Phys Chem Chem Phys 2015;16:22014-27. [PMID: 25205066 DOI: 10.1039/c4cp02822h] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
34
Zinovjev K, Tuñón I. Transition state ensemble optimization for reactions of arbitrary complexity. J Chem Phys 2015;143:134111. [DOI: 10.1063/1.4931596] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]  Open
35
Mehandzhiyski AY, Riccardi E, van Erp TS, Trinh TT, Grimes BA. Ab Initio Molecular Dynamics Study on the Interactions between Carboxylate Ions and Metal Ions in Water. J Phys Chem B 2015;119:10710-9. [DOI: 10.1021/acs.jpcb.5b05616] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
36
Yonetani Y. Distinct dissociation kinetics between ion pairs: Solvent-coordinate free-energy landscape analysis. J Chem Phys 2015;143:044506. [DOI: 10.1063/1.4927093] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
37
Mullen RG, Shea JE, Peters B. Easy Transition Path Sampling Methods: Flexible-Length Aimless Shooting and Permutation Shooting. J Chem Theory Comput 2015;11:2421-8. [DOI: 10.1021/acs.jctc.5b00032] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
38
Peters B. Common Features of Extraordinary Rate Theories. J Phys Chem B 2015;119:6349-56. [DOI: 10.1021/acs.jpcb.5b02547] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
39
Chen JC, Reischl B, Spijker P, Holmberg N, Laasonen K, Foster AS. Ab initio Kinetic Monte Carlo simulations of dissolution at the NaCl-water interface. Phys Chem Chem Phys 2014;16:22545-54. [PMID: 25227553 DOI: 10.1039/c4cp02375g] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
40
Annapureddy HVR, Dang LX. Understanding the rates and molecular mechanism of water-exchange around aqueous ions using molecular simulations. J Phys Chem B 2014;118:8917-27. [PMID: 24911526 DOI: 10.1021/jp502922c] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
41
Mullen RG, Shea JE, Peters B. Transmission Coefficients, Committors, and Solvent Coordinates in Ion-Pair Dissociation. J Chem Theory Comput 2014;10:659-67. [DOI: 10.1021/ct4009798] [Citation(s) in RCA: 89] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
42
Mullen RG, Shea JE, Peters B. Communication: An existence test for dividing surfaces without recrossing. J Chem Phys 2014;140:041104. [DOI: 10.1063/1.4862504] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
43
Holmberg N, Chen JC, Foster AS, Laasonen K. Dissolution of NaCl nanocrystals: an ab initio molecular dynamics study. Phys Chem Chem Phys 2014;16:17437-46. [DOI: 10.1039/c4cp00635f] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
44
Knott BC, Haddad Momeni M, Crowley MF, Mackenzie LF, Götz AW, Sandgren M, Withers SG, Ståhlberg J, Beckham GT. The Mechanism of Cellulose Hydrolysis by a Two-Step, Retaining Cellobiohydrolase Elucidated by Structural and Transition Path Sampling Studies. J Am Chem Soc 2013;136:321-9. [DOI: 10.1021/ja410291u] [Citation(s) in RCA: 141] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
45
Sumikama T, Saito S, Ohmine I. Mechanism of ion permeation through a model channel: Roles of energetic and entropic contributions. J Chem Phys 2013;139:165106. [DOI: 10.1063/1.4827088] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]  Open
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