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Kawashima F, Okutsu K, Kohno JY. Hydrogen/Deuterium Exchange Reaction Rate of Cytochrome c Determined by Droplet Collision Atmospheric Pressure Infrared Laser Ablation Mass Spectrometry. J Phys Chem A 2024; 128:7208-7213. [PMID: 39141611 DOI: 10.1021/acs.jpca.4c03597] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/16/2024]
Abstract
The hydrogen/deuterium (H/D) exchange rate is an optimal measure for studying the structures and dynamics of hydrogen bonding systems, as it reflects the molecular contact environment and the strength of the hydrogen bonds. A method for rapid measurement of the H/D exchange reaction rates is required to examine the intermolecular environments of molecules in solutions. We developed a droplet collision atmospheric pressure infrared laser ablation mass spectrometry technique for this purpose. We obtained the H/D exchange reaction rate of cytochrome c in a methanol/H2O·D2O solution. We revealed that the first hydration shell of the cytochrome c molecule hinders the penetration of D2O to the surface of the molecule from the rates, which provides a novel method to investigate solution structures by a mass-spectrometric method. The droplet-collision mass spectrometry method developed in the present study can be extended to research on the molecular interactions in solutions, such as the mutual interactions of protein molecules, which are of importance in living cells.
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Affiliation(s)
- Fusae Kawashima
- Department of Chemistry, Faculty of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Kenichi Okutsu
- Department of Chemistry, Faculty of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Jun-Ya Kohno
- Department of Chemistry, Faculty of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
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2
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Hellwig N, Martin J, Morgner N. LILBID-MS: using lasers to shed light on biomolecular architectures. Biochem Soc Trans 2022; 50:1057-1067. [PMID: 35695670 PMCID: PMC9317959 DOI: 10.1042/bst20190881] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2022] [Revised: 05/15/2022] [Accepted: 05/20/2022] [Indexed: 11/17/2022]
Abstract
Structural Biology has moved beyond the aim of simply identifying the components of a cellular subsystem towards analysing the dynamics and interactions of multiple players within a cell. This focal shift comes with additional requirements for the analytical tools used to investigate these systems of increased size and complexity, such as Native Mass Spectrometry, which has always been an important tool for structural biology. Scientific advance and recent developments, such as new ways to mimic a cell membrane for a membrane protein, have caused established methods to struggle to keep up with the increased demands. In this review, we summarize the possibilities, which Laser Induced Liquid Bead Ion Desorption (LILBID) mass spectrometry offers with regard to the challenges of modern structural biology, like increasingly complex sample composition, novel membrane mimics and advanced structural analysis, including next neighbor relations and the dynamics of complex formation.
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Affiliation(s)
- Nils Hellwig
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt/Main, Max-von-Laue-Str. 9, 60438 Frankfurt/Main, Germany
| | - Janosch Martin
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt/Main, Max-von-Laue-Str. 9, 60438 Frankfurt/Main, Germany
| | - Nina Morgner
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt/Main, Max-von-Laue-Str. 9, 60438 Frankfurt/Main, Germany
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3
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Suzuki S, Kamoshita A, Kohno JY. Chemical Reactions at the Interface Periphery of Colliding Droplets Studied by Raman Image Analysis. J Phys Chem A 2021; 125:9161-9166. [PMID: 34641683 DOI: 10.1021/acs.jpca.1c06163] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Chemical reactions at the interface of reactive solutions are of importance for a full understanding of solution reactions. We investigate the chemical reaction induced by the collision of two droplets. The extent of the reaction is measured by analyzing spectra and images of the Raman scattered light emerging from the interface of the colliding droplets of H2SO4 and NH3 aqueous solutions. The obtained product concentration is lower than that expected from a simple diffusion model. The result indicates that a fresh interface is produced at the periphery of the mixing region of the colliding droplets. This study provides the basis to extend this method to measure rapid chemical reactions at the interface of colliding droplets.
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Affiliation(s)
- Shuhei Suzuki
- Department of Chemistry, Faculty of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Aya Kamoshita
- Department of Chemistry, Faculty of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Jun-Ya Kohno
- Department of Chemistry, Faculty of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
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4
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Asami H, Kawauchi N, Kohno JY. Gas-phase hydration of the lysozyme ion produced by infrared-laser ablation of a droplet beam studied by photodissociation and fluorescence spectroscopy. JOURNAL OF MASS SPECTROMETRY : JMS 2021; 56:e4620. [PMID: 32721078 DOI: 10.1002/jms.4620] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Revised: 07/06/2020] [Accepted: 07/08/2020] [Indexed: 06/11/2023]
Abstract
Biomolecules function in an aqueous environment. Elucidation of the hydration structures of biomolecules is hence important to understand their functions. Here, we investigated the hydration structure of lysozyme (Lys) in the gas phase by photodissociation and fluorescence spectroscopy in combination with droplet-beam laser ablation mass spectrometry. We found that water molecules are held inside and on the surface of the Lys molecule, and the hydration structure around the tryptophan residue changes by photoexcitation. This study provides a novel method to observe the hydration structures of large biomolecules at the molecular level.
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Affiliation(s)
- Hiroya Asami
- Department of Chemistry, Faculty of Science, Gakushuin University, Tokyo, Japan
| | - Norishi Kawauchi
- Department of Chemistry, Faculty of Science, Gakushuin University, Tokyo, Japan
| | - Jun-Ya Kohno
- Department of Chemistry, Faculty of Science, Gakushuin University, Tokyo, Japan
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5
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Asami H, Kawabata R, Kawauchi N, Kohno JY. Photodissociation Spectroscopy of Hydrated Myoglobin Ions Isolated by IR-laser Ablation of a Droplet Beam: Recovery from pH-denatured Structure by Gas-phase Isolation. CHEM LETT 2019. [DOI: 10.1246/cl.180884] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Hiroya Asami
- Department of Chemistry, Faculty of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Rina Kawabata
- Department of Chemistry, Faculty of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Norishi Kawauchi
- Department of Chemistry, Faculty of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Jun-ya Kohno
- Department of Chemistry, Faculty of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
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6
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Ishii S, Sato S, Asami H, Hasegawa T, Kohno JY, Nakamura H. Design of S–S bond containing maleimide-conjugated closo-dodecaborate (SSMID): identification of unique modification sites on albumin and investigation of intracellular uptake. Org Biomol Chem 2019; 17:5496-5499. [DOI: 10.1039/c9ob00584f] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The S–S bond containing maleimide-conjugated closo-dodecaborate (SSMID) was synthesised to identify the binding sites in bovin serum albumin (BSA).
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Affiliation(s)
- Satomu Ishii
- Laboratory for Chemistry and Life Science
- Institute of Innovative Research
- Tokyo Institute of Technology
- Yokohama
- Japan
| | - Shinichi Sato
- Laboratory for Chemistry and Life Science
- Institute of Innovative Research
- Tokyo Institute of Technology
- Yokohama
- Japan
| | - Hiroya Asami
- Department of Chemistry
- Facility of Science
- Gakushuin University
- Tokyo 171-8588
- Japan
| | - Tomoko Hasegawa
- Department of Chemistry
- Facility of Science
- Gakushuin University
- Tokyo 171-8588
- Japan
| | - Jun-Ya Kohno
- Department of Chemistry
- Facility of Science
- Gakushuin University
- Tokyo 171-8588
- Japan
| | - Hiroyuki Nakamura
- Laboratory for Chemistry and Life Science
- Institute of Innovative Research
- Tokyo Institute of Technology
- Yokohama
- Japan
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Abstract
Dynamic properties of the metastable interface between two miscible solutions are investigated by the collision of two droplets. A clear interface is observed between the two colliding droplets. The interface moves in the colliding droplet toward the side where the original droplet has a lower surface tension. The interface is set to the middle of the colliding droplet by controlling the surface tension of the droplets to observe the chemical reactions at the droplet interface by cavity-enhanced Raman spectroscopy. This study provides a foundation for further research on the initial process of the chemical reactions of two miscible solutions.
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Affiliation(s)
- Kazuma Anahara
- Department of Chemistry, Faculty of Science, Gakushuin University , 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Jun-Ya Kohno
- Department of Chemistry, Faculty of Science, Gakushuin University , 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
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8
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Kihara Y, Asami H, Kohno JY. Evaporation and Subsequent Adsorption of Alcohol Molecules at Aqueous Droplet Surface Observed by Cavity-Enhanced Raman Spectroscopy. J Phys Chem B 2017; 121:4538-4543. [PMID: 28398742 DOI: 10.1021/acs.jpcb.7b01277] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Mass transfer toward and across liquid surfaces is important for the interpretation of various interfacial phenomena, such as evaporation, adsorption, and mass accommodation, which have been investigated by the use of various methods. These studies, however, have focused on only one of the mass-transfer processes occurring at the surface. We investigate the surface concentration of alcohol molecules at aqueous droplet surfaces on the several-millisecond time scale using cavity-enhanced droplet Raman spectroscopy. A decrease and subsequent increase of the alcohol concentration are observed in a set of measurements, which arise from an evaporation and subsequent adsorption of the alcohol molecules at the surface. This facilitates an understanding of the surface kinetics of molecules at the liquid surfaces.
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Affiliation(s)
- Yasuhito Kihara
- Department of Chemistry, Faculty of Science, Gakushuin University , 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Hiroya Asami
- Department of Chemistry, Faculty of Science, Gakushuin University , 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Jun-Ya Kohno
- Department of Chemistry, Faculty of Science, Gakushuin University , 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
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Yang TT, Saidi WA. Tuning the hydrogen evolution activity of β-Mo 2C nanoparticles via control of their growth conditions. NANOSCALE 2017; 9:3252-3260. [PMID: 28225110 DOI: 10.1039/c6nr09893b] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
The use of water electrocatalysis for hydrogen production is a promising, sustainable and greenhouse-gas-free process to develop disruptive renewable energy technologies. Transition metal carbides, in particular β-phase Mo2C, are garnering increased attention as hydrogen evolution reaction (HER) catalysts due to their favourable synthesis conditions, stability and high catalytic efficiency. We use a thermodynamic approach in conjunction with density functional theory and a kinetic model of exchange current density to systematically study the HER activity of β-Mo2C under different experimental conditions. We show that the (011) surface has the highest HER activity, which is rationalized by its lack of strong Mo-based hydrogen adsorption sites. Thus, the HER efficiency of β-Mo2C can be tuned using nanoparticles (NPs) that expose larger fractions of this termination. We give definite maps between NP morphologies and experimental synthesis conditions, and show that the control of the carbon chemical potential during synthesis can expose up to 90% of the (011) surface, while ambient H2 has little effect on the NP morphology. The "volcano" plot shows that under these optimum conditions, the NP exchange current density is ∼10-5 A cm-2, that is only slightly smaller than that of Pt (111).
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Affiliation(s)
- Timothy T Yang
- Department of Materials Science and Engineering, University of Pittsburgh, Pittsburgh, PA 15260, USA.
| | - Wissam A Saidi
- Department of Materials Science and Engineering, University of Pittsburgh, Pittsburgh, PA 15260, USA.
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10
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Kohno JY, Higashiura T, Eguchi T, Miura S, Ogawa M. Development of a Tandem Electrodynamic Trap Apparatus for Merging Charged Droplets and Spectroscopic Characterization of Resultant Dried Particles. J Phys Chem B 2016; 120:7696-703. [PMID: 27438227 DOI: 10.1021/acs.jpcb.6b04170] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Materials work in multicomponent forms. A wide range of compositions must be tested to obtain the optimum composition for a specific application. We propose optimization using a series of small levitated single particles. We describe a tandem-trap apparatus for merging liquid droplets and analyzing the merged droplets and/or dried particles that are produced from the merged droplets under levitation conditions. Droplet merging was confirmed by Raman spectroscopic studies of the levitated particles. The tandem-trap apparatus enables the synthesis of a particle and spectroscopic investigation of its properties. This provides a basis for future investigation of the properties of levitated single particles.
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Affiliation(s)
- Jun-Ya Kohno
- Department of Chemistry, Faculty of Science, Gakushuin University , 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Tetsu Higashiura
- Department of Chemistry, Faculty of Science, Gakushuin University , 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Takaaki Eguchi
- Department of Chemistry, Faculty of Science, Gakushuin University , 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Shumpei Miura
- Department of Chemistry, Faculty of Science, Gakushuin University , 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Masato Ogawa
- Department of Chemistry, Faculty of Science, Gakushuin University , 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
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11
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Komatsu K, Nirasawa T, Hoshino-Nagasaka M, Kohno JY. Mechanism of Protein Molecule Isolation by IR Laser Ablation of Droplet Beam. J Phys Chem A 2016; 120:1495-500. [PMID: 26903000 DOI: 10.1021/acs.jpca.5b10873] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Gas-phase isolation of bovine serum albumin (BSA) from aqueous solutions is performed by IR laser ablation of a droplet beam. Multiply charged BSA ions (positive and negative) were produced by the IR laser irradiation onto a droplet beam of aqueous BSA solutions with various pH values prepared by addition of hydrochloric acid or sodium hydroxide to the solution. The isolation mechanism was discussed based on the charge state of the isolated BSA ions. A nanodroplet model explains the gas-phase charge distribution of the BSA ions. This study provides a fundamental basis for further studies of a wide variety of biomolecules in the gas phase isolated directly from solution.
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Affiliation(s)
- Kensuke Komatsu
- Department of Chemistry, Faculty of Science, Gakushuin University , 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Takuya Nirasawa
- Department of Chemistry, Faculty of Science, Gakushuin University , 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Mariko Hoshino-Nagasaka
- Department of Chemistry, Faculty of Science, Gakushuin University , 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Jun-ya Kohno
- Department of Chemistry, Faculty of Science, Gakushuin University , 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
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12
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Takano Y, Kikkawa S, Suzuki T, Kohno JY. Coloring Rate of Phenolphthalein by Reaction with Alkaline Solution Observed by Liquid-Droplet Collision. J Phys Chem B 2015; 119:7062-7. [DOI: 10.1021/acs.jpcb.5b03233] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Yuuka Takano
- Department
of Chemistry, Faculty of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Shigenori Kikkawa
- Department
of Chemistry, Faculty of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Tomoko Suzuki
- Department
of Chemistry, Faculty of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Jun-ya Kohno
- Department
of Chemistry, Faculty of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
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13
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Suzuki T, Kohno JY. Simultaneous Detection of Images and Raman Spectra of Colliding Droplets: Composition Analysis of Protrusions Emerging during Collisions of Ethanol and Water Droplets. J Phys Chem B 2014; 118:5781-6. [DOI: 10.1021/jp503285w] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Tomoko Suzuki
- Department
of Chemistry,
Faculty of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
| | - Jun-ya Kohno
- Department
of Chemistry,
Faculty of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-ku, Tokyo 171-8588, Japan
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14
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Kohno JY, Kobayashi M, Suzuki T. Protrusion formation during the collisional process of ethanol and water droplets: Capillary wave propagation on the water droplet. Chem Phys Lett 2013. [DOI: 10.1016/j.cplett.2013.06.010] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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