Electronic Transitions of Protonated and Deprotonated Amino Acids in Aqueous Solution in the Region 145–300 nm Studied by Attenuated Total Reflection Far-Ultraviolet Spectroscopy

ATR-far-ultraviolet spectroscopy: a challenge to new σ chemistry

This review reports the recent progress on ATR-far ultraviolet (FUV) spectroscopy in the condensed phase. ATR-FUV spectroscopy for liquids and solids enables one to explore various topics in physical chemistry, analytical chemistry, nanoscience and technology, materials science, electrochemistry, and organic chemistry. In this review, we put particular emphasis on the three major topics: (1) studies on electronic transitions and structures of various molecules, which one cannot investigate via ordinary UV spectroscopy. The combined use of ATR-FUV spectroscopy and quantum chemical calculations allows for the investigation of various electronic transitions, including σ, n-Rydberg transitions. ATR-FUV spectroscopy may open a new avenue for σ-chemistry. (2) ATR-FUV spectroscopy enables one to measure the first electronic transition of water at approximately 160 nm without peak saturation. Using this band, one can study the electronic structure of water, aqueous solutions, and adsorbed water. (3) ATR-FUV spectroscopy has its own advantages of the ATR method as a surface analysis method. ATR-FUV spectroscopy is a powerful technique for exploring a variety of top surface phenomena (∼50 nm) in adsorbed water, polymers, graphene, organic materials, ionic liquids, and so on. This review briefly describes the principles, characteristics, and instrumentation of ATR-FUV spectroscopy. Next, a detailed description about quantum chemical calculation methods for FUV and UV regions is given. The recent application of ATR-FUV-UV spectroscopy studies on electronic transitions from σ orbitals in various saturated molecules is introduced first, followed by a discussion on the applications of ATR-FUV spectroscopy to studies on water, aqueous solutions, and adsorbed water. Applications of ATR-FUV spectroscopy in the analysis of other materials such as polymers, ionic liquids, inorganic semiconductors, graphene, and carbon nanocomposites are elucidated. In addition, ATR-FUV-UV-vis spectroscopy focusing on electrochemical interfaces is outlined. Finally, FUV-UV-surface plasmon resonance studies are discussed.

Low-cost and simple fabrication of hierarchical Al nanopit arrays for deep ultraviolet refractive index sensing

Herein, we proposed a simple non-lithographic way to fabricate hierarchical Al nanopit arrays performed as deep ultraviolet (DUV, 200-300 nm) refractive index sensing. Only by adjusting the Al deposition thickness on the Al nanopit array, the hierarchical Al nanopit arrays with tunable plasmonic properties in the DUV region were obtained. The prepared hierarchical Al nanopit arrays are of very good time stability and its RI sensitivity and concentration detection limit of adenine ethanol solution reach 311 nm/RIU and5×10-6M,respectively, as the Al deposition thickness is 60 nm. Furthermore, the electric field distribution simulation results show that high RI sensing characteristic are mainly attributed to the local surface plasmon resonance. This investigation provides a facile way to develop low cost, high efficient and easily fabricated Al-based RI sensor in the DUV region.

Attenuated Total Reflection Far-Ultraviolet (ATR-FUV) Spectroscopy is a Sensitive Tool for Investigation of Protein Adsorption

Attenuated total reflection far-ultraviolet (ATR-FUV) spectra in the 145-250 nm region were studied for four kinds of proteins (two α-helix-rich proteins: bovine serum albumin (BSA) and lysozyme and two β-sheet rich proteins: concanavalin A and γ-globulin) in different solutions (pure water and phosphate buffered saline, or PBS) with different concentrations. All the spectra show a band at 191 nm due to the π-π^* transition of amide bonds of the proteins. The wavelength of the band does not change with their second structures, suggesting that the corresponding electronic transition mode is localized and polarized in the direction that is not affected by the difference in the peptide folding. The intensity of the 191 nm band differs with the concentration of salt in the solution, suggesting that the band intensity reflects the adsorption density of a protein on the internal reflection element (IRE) made of a sapphire glass prism. According to the intensity changes of the band at 191 nm, it is revealed that the properties in adsorption are different from one protein to another. It is assumed that there are two types of forces on the protein adsorption: one is that among the molecules and the other is that between a molecule and a substrate. The origin of force includes localized electrostatic polarity and affinity to water. The ions in the solvent give a marked effect on these forces, resulting in the difference in the response to adsorption density against the salt concentration in the solvent.

Spectroscopic observation and ultrafast coherent vibrational dynamics of the aqueous phenylalanine radical

The phenylalanine radical (Phe˙) has been proposed to mediate biological electron transport (ET) and exhibit long-lived electronic coherences following attosecond photoionization. However, the coupling of ultrafast structural reorganization to the oxidation/ionization of biomolecules such as phenylalanine remains unexplored. Moreover, studies of ET involving Phe˙ are hindered by its hitherto unobserved electronic spectrum. Here, we report the spectroscopic observation and coherent vibrational dynamics of aqueous Phe˙, prepared by sub-6 fs photodetachment of phenylalaninate anions. Sub-picosecond transient absorption spectroscopy reveals the ultraviolet absorption signature of Phe˙. Ultrafast structural reorganization drives coherent vibrational motion involving nine fundamental frequencies and one overtone. DFT calculations rationalize the absence of the decarboxylation reaction, a photodegradation pathway previously identified for Phe˙. Our findings guide the interpretation of future attosecond experiments aimed at elucidating coherent electron motion in photoionized aqueous biomolecules and pave way for the spectroscopic identification of Phe˙ in studies of biological ET.

Advances, challenges and perspectives of quantum chemical approaches in molecular spectroscopy of the condensed phase

The purpose of this review is to demonstrate advances, challenges and perspectives of quantum chemical approaches in molecular spectroscopy of the condensed phase. Molecular spectroscopy, particularly vibrational spectroscopy and electronic spectroscopy, has been used extensively for a wide range of areas of chemical sciences and materials science as well as nano- and biosciences because it provides valuable information about structure, functions, and reactions of molecules. In the meantime, quantum chemical approaches play crucial roles in the spectral analysis. They also yield important knowledge about molecular and electronic structures as well as electronic transitions. The combination of spectroscopic approaches and quantum chemical calculations is a powerful tool for science, in general. Thus, our article, which treats various spectroscopy and quantum chemical approaches, should have strong implications in the wider scientific community. This review covers a wide area of molecular spectroscopy from far-ultraviolet (FUV, 120-200 nm) to far-infrared (FIR, 400-10 cm-1)/terahertz and Raman spectroscopy. As quantum chemical approaches, we introduce several anharmonic approaches such as vibrational self-consistent field (VSCF) and the combination of periodic harmonic calculations with anharmonic corrections based on finite models, grid-based techniques like the Numerov approach, the Cartesian coordinate tensor transfer (CCT) method, Symmetry-Adapted Cluster Configuration-Interaction (SAC-CI), and the ZINDO (Semi-empirical calculations at Zerner's Intermediate Neglect of Differential Overlap). One can use anharmonic approaches and grid-based approaches for both infrared (IR) and near-infrared (NIR) spectroscopy, while CCT methods are employed for Raman, Raman optical activity (ROA), FIR/terahertz and low-frequency Raman spectroscopy. Therefore, this review overviews cross relations between molecular spectroscopy and quantum chemical approaches, and provides various kinds of close-reality advanced spectral simulation for condensed phases.

ATR-far-ultraviolet spectroscopy in the condensed phase-The present status and future perspectives

Far-ultraviolet (FUV) spectroscopy in the region of 140-200 nm of condensed-phase has received keen interest as a new electronic spectroscopy. The introduction of the attenuated total reflection (ATR) technique to the FUV region has opened a new avenue for FUV spectroscopy of liquids and solids. ATR-FUV spectroscopy enables the study of electronic structures and transitions of most types of molecules. It also holds great promise for a variety of applications, i.e., from the application to basic sciences to practical applications. In this review, the characteristics and advantages of ATR-FUV spectroscopy in the condensed phase are described first; then, a brief historical overview is provided. Next, the ATR-FUV spectroscopy instrumentation is outlined. After these introductory parts, a variety of AFT-FUV spectroscopy applications are introduced, starting from applications to investigations of electronic structure and transitions of alkanes, graphenes, and polymers. Then, time-resolved ATR-FUV spectroscopy is discussed. The applications to materials research, such as the research on inorganic semiconductors and ionic liquids, follow. In the last part, the FUV spectroscopy perspective is emphasized.

Enhanced Surface Plasmon Resonance Wavelength Shifts by Molecular Electronic Absorption in Far- and Deep-Ultraviolet Regions

In this study, surface plasmon resonance (SPR) wavelength shifts due to molecular electronic absorptions in the far-ultraviolet (FUV, < 200 nm) and deep-ultraviolet (DUV, < 300 nm) regions were investigated by attenuated total reflectance (ATR) spectroscopy. Due to the strong absorption in the DUV region, N,N-dimethylformamide (DMF) significantly increased the SPR wavelength shift of Al film. On the other hand, no such shift enhancement was observed in the visible region for Au film because DMF does not have absorbance compared to non-absorbing materials such as water and alcohols. The enhanced SPR wavelength shift, caused by the overlap between SPR and molecular resonance wavelengths in FUV-DUV region, is expected to result in high sensitivity for resonant materials.

The primary photo-dissociation dynamics of amino acids in aqueous solution: breaking the Cα-bond

Photo-excitation of aqueous amino acids at 200 nm breaks the C_α-bond.

Study of first electronic transition and hydrogen bonding state of ultra-thin water layer of nanometer thickness on an α-alumina surface by far-ultraviolet spectroscopy

The first electronic transition (A˜←X˜) and the hydrogen bonding state of an ultra-thin water layer of nanometer thickness between two α-alumina surfaces (0.5-20nm) were studied using far-ultraviolet (FUV) spectroscopy in the wavelength range 140-180nm. The ultra-thin water layer of nanometer thickness was prepared by squeezing a water droplet (~1μL) between a highly polished α-alumina prism and an α-alumina plate using a high pressure clamp (~4.7MPa), and the FUV spectra of the water layer at different thicknesses were measured using the attenuated total reflection method. As the water layer became thinner, the A˜←X˜ bands were gradually shifted to higher or lower energy relative to that of bulk water; at thicknesses smaller than 4nm, these shifts were substantial (0.1-0.2eV) in either case. The FUV spectra of the water layer with thickness <4nm indicate the formation of structured ice-like hydrogen bond (H-bond) layers for the higher energy shifts or the formation of slightly weaker H-bond layers as compared to those in the bulk liquid state for lower energy shifts. In either case, the H-bond structure of bulk liquid water is nearly lost at thicknesses below 4nm, because of steric hydration forces between the α-alumina surfaces.

Far- and deep-ultraviolet surface plasmon resonance sensors working in aqueous solutions using aluminum thin films

Surface plasmon resonance (SPR) sensors detect refractive index changes on metal thin films and are frequently used in aqueous solutions as bio- and chemical-sensors. Recently, we proposed new SPR sensors using aluminum (Al) thin films that work in the far- and deep-ultraviolet (FUV-DUV, 120-300 nm) regions and investigated SPR properties by an attenuated total reflectance (ATR) based spectrometer. The FUV-DUV-SPR sensors are expected to have three advantages compared to visible-SPR sensors: higher sensitivity, material selectivity, and surface specificity. However, in this study, it was revealed that the Al thin film on a quartz prism cannot be used as the FUV-DUV-SPR sensor in water solutions. This is because its SPR wavelength shifts to the visible region owing to the presence of water. On the other hand, the SPR wavelength of the Al thin film on the sapphire prism remained in the DUV region even in water. In addition, the SPR wavelength shifted to longer wavelengths with increasing refractive index on the Al thin film. These results mean that the Al thin film on the sapphire prism can be used as the FUV-DUV-SPR sensor in solutions, which may lead to the development of novel and sophisticated SPR sensors.

Interpretation of the à ← X̃ transition of hydrated protons in aqueous solutions observed in the far-UV region with quantum chemical calculations

A substantial blue-shift of the first electronic transition band of liquid water with a H₂SO₄ concentration (0–14.4 M) observed in the far-UV region.

Direct optical measurements of far- and deep-ultraviolet surface plasmon resonance with different refractive indices

The surface plasmon resonance (SPR) of Al thin films was investigated by varying the refractive index of the environment near the films in the far-ultraviolet (FUV, 120-200 nm) and deep-ultraviolet (DUV, 200-300 nm) regions. An original FUV-DUV spectrometer that adopts an attenuated total reflectance (ATR) system was used. The measurable wavelength range was down to the 180 nm, and the environment near the Al surface could be controlled. The resultant spectra enabled the dispersion relationship of Al-SPR in the FUV and DUV regions to be obtained. In the presence of 1,1,1,3,3,3-hexafluoro-2-propanol (HFIP) on the Al film, the angle and wavelength of the SPR became larger and longer, respectively, compared to those in air. These shifts correspond well with the results of simulations performed using Fresnel equations.

Electronic absorption spectra of imidazolium-based ionic liquids studied by far-ultraviolet spectroscopy and quantum chemical calculations

Electronic absorption spectra of imidazolium-based ionic liquids were studied by far- and deep-ultraviolet spectroscopy and quantum chemical calculations.

Far-ultraviolet spectroscopy of solid and liquid states: characteristics, instrumentation, and applications

Far-ultraviolet spectroscopy (≥200 nm) can greatly contribute to the basic science of electronic structures for almost all materials and their applications.

Surface Effect of Alumina on the First Electronic Transition of Liquid Water Studied by Far-Ultraviolet Spectroscopy

The first electronic transition (à ← X̃) of liquid water (H2O and D2O) on an α-alumina substrate was studied using variable angle attenuated total reflection far-ultraviolet (VA-ATR-FUV) spectroscopy in the wavelength region 140-180 nm (8.86-6.89 eV). A variation in the penetration depth of the evanescent wave of a probe light (25-19 nm) directly determined individual FUV spectra associated with bulk water (distance from the alumina surface >2 nm) and interfacial water (<2 nm). We found that the à ← X̃ band of the interfacial water was markedly blue-shifted and red-tailed relative to the bulk water. The electronic state difference of the interfacial water from the bulk water mainly arose from the hydrogen-bond structure and energy affected by the alumina surface.

Action spectroscopy of a protonated peptide in the ultraviolet range

Action spectroscopy of substance P, a model undecapeptide, has been probed from 5.2 eV to 20 eV.