1
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Ucur B, Shiels OJ, Blanksby SJ, Trevitt AJ. Observation of Solvent-Dependence in the Mechanism of Neutral-Catalyzed Isomerization of para-Aminobenzoic Acid Protomers. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2024; 35:1128-1137. [PMID: 38523556 DOI: 10.1021/jasms.3c00433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/26/2024]
Abstract
Proton-transfer reactions are commonplace during electrospray ionization (ESI) mass spectrometry experiments and are often responsible for imparting charge to analyte molecules. Multiple protonation-site isomers (protomers) can arise for polyfunctional molecules and these isomers can interconvert via solvent-mediated proton transfer reactions during various stages of the ESI process. Studying the populations and interconversion of protonation isomers provides key insight into the ESI process, ion-molecule interactions, and ion dissociation mechanisms. An archetype molecule to study protomer interconversion fundamentals in this context is para-aminobenzoic acid (pABA), where both the amino and carboxylic acid protomers are typically formed under ESI and the mechanisms for interconversion are still under refinement. Using ion-trap mass spectrometry reaction kinetics (2.5 mTorr, 300 K), this study examines gas-phase interconversion catalysis of pABA protomers by seven neutral species, which are commen solvents and additives used for ESI: water, formic acid, methanol, ethanol, propanol, ammonia, and acetonitrile. Three distinct reaction cases are reported: (i) formic acid, methanol, ethanol, propanol, and ammonia each catalyze the interconversion between the amino and carboxylic acid protomers via a n = 1 solvent-molecule vehicle mechanism; (ii) for water, however, a n = 6 adduct complex is detected and this suggests that the observed protomer interconversion occurs through a Grotthuss mechanism, in accord with literature reports; (iii) acetonitrile inhibits proton transfer by the formation of particularly stable n = 1 and 2 adduct complexes. The second-order rate constants for the protomer interconversion are observed to increase in the following order: H2O < HCO2H < MeOH < EtOH < PrOH < NH3. Potential energy schemes are reported for all neutral-catalyzed proton transfer reactions using the DSD-PBEP86-D3(BJ)/aug-cc-pVDZ level of theory. A central transition state, which connects the protonation site adducts, is shown to be the key rate-limiting step. The energy of this transition state is sensitive to the proton affinity of the neutral solvent, and this is supported by the correlation between the reaction rate and the solvent proton affinity.
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Affiliation(s)
- Boris Ucur
- Molecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, New South Wales 2522, Australia
| | - Oisin J Shiels
- Molecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, New South Wales 2522, Australia
| | - Stephen J Blanksby
- Central Analytical Research Facility and the School of Chemistry and Physics, Queensland University of Technology, Brisbane 4001, Australia
| | - Adam J Trevitt
- Molecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, New South Wales 2522, Australia
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2
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Bhattacharya P, De S. Simple naturally occurring β-carboline alkaloids – role in sustainable theranostics. PHYSICAL SCIENCES REVIEWS 2022. [DOI: 10.1515/psr-2022-0132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Abstract
This review is a brief treatise on some simple β-carboline alkaloids that are abundantly available in plants, animals and foodstuff. These alkaloids are well known for their pharmacological action as well as their allelopathic behaviour. The focus of this review is on sustainable use of naturally occurring compounds in safeguarding human health and protecting our environment at large i.e. the prospective applications of these molecules for Sustainable Theranostics. The review commences with an initial introduction to the β-carboline alkaloids, followed by an outlay of their geographical distribution and natural abundance, then the basic structure and building units of the simplest β-carboline alkaloids have been mentioned. This is followed by a discussion on the important methods of extraction from natural sources both plants and animals. Then the foundation for the use of these alkaloids in Sustainable Theranostics has been built by discussing their interesting photophysics, interactions with important biological molecules and an extensive survey of their therapeutic potential and allelopathic behaviour. Finally the review ends with a silver lining mentioning the future prospective applications of these alkaloids with special relevance to sustainability issues.
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Affiliation(s)
| | - Swati De
- Department of Chemistry , University of Kalyani , Kalyani , 741235 , India
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3
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Preeyanka N, Akhuli A, Dey H, Chakraborty D, Rahaman A, Sarkar M. Realization of a Model-Free Pathway for Quantum Dot-Protein Interaction Beyond Classical Protein Corona or Protein Complex. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:10704-10715. [PMID: 35970517 DOI: 10.1021/acs.langmuir.2c01789] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Although in recent times nanoparticles (NPs) are being used in various biological applications, their mechanism of binding interactions still remains hazy. Usually, the binding mechanism is perceived to be mediated through either the protein corona (PC) or protein complex (PCx). Herein, we report that the nanoparticle (NP)-protein interaction can also proceed via a different pathway without forming the commonly observed PC or PCx. In the present study, the NP-protein interaction between less-toxic zinc-silver-indium-sulfide (ZAIS) quantum dots (QDs) and bovine serum albumin (BSA) was investigated by employing spectroscopic and microscopic techniques. Although the analyses of data obtained from fluorescence and thermodynamic studies do indicate the binding between QDs and BSA, they do not provide clear experimental evidence in favor of PC or PCx. Quite interestingly, high-resolution transmission electron microscopy (HRTEM) studies have shown the formation of a new type of species where BSA protein molecules are adsorbed onto some portion of a QD surface rather than the entire surface. To the best of our knowledge, we believe that this is the first direct experimental evidence in favor of a model-free pathway for NP-protein interaction events. Thus, the outcome of the present study, through experimental evidence, clearly suggests that NP-protein interaction can proceed by following a pathway that is different from classical PC and PCx.
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Affiliation(s)
- Naupada Preeyanka
- School of Chemical Sciences, National Institute of Science Education and Research (NISER), An OCC of Homi Bhabha National Institute, Jatni, Khurda, Bhubaneswar, 752050 Odisha, India
- Centre for Interdisciplinary Sciences (CIS), NISER, Jatni, Khurda, Bhubaneswar, 752050 Odisha, India
| | - Amit Akhuli
- School of Chemical Sciences, National Institute of Science Education and Research (NISER), An OCC of Homi Bhabha National Institute, Jatni, Khurda, Bhubaneswar, 752050 Odisha, India
- Centre for Interdisciplinary Sciences (CIS), NISER, Jatni, Khurda, Bhubaneswar, 752050 Odisha, India
| | - Himani Dey
- School of Biological Sciences, National Institute of Science Education and Research (NISER), An OCC of Homi Bhabha National Institute, Jatni, Khurda, Bhubaneswar, 752050 Odisha, India
- Centre for Interdisciplinary Sciences (CIS), NISER, Jatni, Khurda, Bhubaneswar, 752050 Odisha, India
| | - Debabrata Chakraborty
- School of Chemical Sciences, National Institute of Science Education and Research (NISER), An OCC of Homi Bhabha National Institute, Jatni, Khurda, Bhubaneswar, 752050 Odisha, India
- Centre for Interdisciplinary Sciences (CIS), NISER, Jatni, Khurda, Bhubaneswar, 752050 Odisha, India
| | - Abdur Rahaman
- School of Biological Sciences, National Institute of Science Education and Research (NISER), An OCC of Homi Bhabha National Institute, Jatni, Khurda, Bhubaneswar, 752050 Odisha, India
- Centre for Interdisciplinary Sciences (CIS), NISER, Jatni, Khurda, Bhubaneswar, 752050 Odisha, India
| | - Moloy Sarkar
- School of Chemical Sciences, National Institute of Science Education and Research (NISER), An OCC of Homi Bhabha National Institute, Jatni, Khurda, Bhubaneswar, 752050 Odisha, India
- Centre for Interdisciplinary Sciences (CIS), NISER, Jatni, Khurda, Bhubaneswar, 752050 Odisha, India
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4
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Yamamoto S, Ishiro S, Kessler J, Bouř P. Intense chiral signal from α-helical poly-L-alanine observed in low-frequency Raman optical activity. Phys Chem Chem Phys 2021; 23:26501-26509. [PMID: 34806737 DOI: 10.1039/d1cp04401j] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Raman optical activity (ROA) spectral features reliably indicate the structure of peptides and proteins, but the signal is often weak. However, we observed significantly enhanced low-frequency bands for α-helical poly-L-alanine (PLA) in solution. The biggest ROA signal at ∼100 cm-1 is about 10 times stronger than higher-frequency bands described previously, which facilitates the detection. The low-frequency bands of PLA were compared to those of α-helical proteins. For PLA, density functional simulations well reproduced the experimental spectra and revealed that about 12 alanine residues within two turns of the α-helix generate the strong ROA band. Averaging based on molecular dynamics (MD) provided an even more realistic spectrum compared to the static model. The low-frequency bands could be largely related to a collective motion of the α-helical backbone, partially modulated by the solvent. Helical and intermolecular vibrational coordinates have been introduced and the helical unwinding modes were assigned to the strongest ROA signal at 101-128 cm-1. Further analysis indicated that the helically arranged amide and methyl groups are important for the strong chiral signal of PLA, while the local chiral centers CαH contribute in a minor way only. The strong low-frequency ROA can thus provide precious information about the motions of the peptide backbone and facilitate future protein studies.
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Affiliation(s)
- Shigeki Yamamoto
- Department of Chemistry, Graduate School of Science, Osaka University, Osaka 560-0043, Japan.
| | - Shota Ishiro
- Department of Chemistry, Graduate School of Science, Osaka University, Osaka 560-0043, Japan.
| | - Jiří Kessler
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, 16610 Prague, Czech Republic.
| | - Petr Bouř
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, 16610 Prague, Czech Republic.
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Akhuli A, Chakraborty D, Agrawal AK, Sarkar M. Probing the Interaction of Bovine Serum Albumin with Copper Nanoclusters: Realization of Binding Pathway Different from Protein Corona. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2021; 37:1823-1837. [PMID: 33502208 DOI: 10.1021/acs.langmuir.0c03176] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
With an aim to understand the interaction mechanism of bovine serum albumin (BSA) with copper nanoclusters (CuNCs), three different types CuNCs having chemically different surface ligands, namely, tannic acid (TA), chitosan, and cysteine (Cys), have been fabricated, and investigations are carried out in the absence and presence of protein (BSA) at ensemble-averaged and single-molecule levels. The CuNCs, capped with different surface ligands, are consciously chosen so that the role of surface ligands in the overall protein-NCs interactions is clearly understood, but, more importantly, to find whether these CuNCs can interact with protein in a new pathway without forming the "protein corona", which otherwise has been observed in relatively larger nanoparticles when they are exposed to biological fluids. Analysis of the data obtained from fluorescence, ζ-potential, and ITC measurements has clearly indicated that the BSA protein in the presence of CuNCs does not attain the binding stoichiometry (BSA/CuNCs > 1) that is required for the formation of "protein corona". This conclusion is further substantiated by the outcome of the fluorescence correlation spectroscopy (FCS) study. Further analysis of data and thermodynamic calculations have revealed that the surface ligands of the CuNCs play an important role in the protein-NCs binding events, and they can alter the mode and thermodynamics of the process. Specifically, the data have demonstrated that the binding of BSA with TA-CuNCs and Chitosan-CuNCs follows two types of binding modes; however, the same with Cys-CuNCs goes through only one type of binding mode. Circular dichroism (CD) measurements have indicated that the basic structure of BSA remains almost unaltered in the presence of CuNCs. The outcome of the present study is expected to encourage and enable better application of NCs in biological applications.
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Affiliation(s)
- Amit Akhuli
- School of Chemical Sciences, National Institute of Science Education and Research, HBNI, Bhimpur-Padanpur, Jatni, Khorda, Bhubaneswar 752050, Odisha, India
| | - Debabrata Chakraborty
- School of Chemical Sciences, National Institute of Science Education and Research, HBNI, Bhimpur-Padanpur, Jatni, Khorda, Bhubaneswar 752050, Odisha, India
| | - Aman Kumar Agrawal
- School of Chemical Sciences, National Institute of Science Education and Research, HBNI, Bhimpur-Padanpur, Jatni, Khorda, Bhubaneswar 752050, Odisha, India
| | - Moloy Sarkar
- School of Chemical Sciences, National Institute of Science Education and Research, HBNI, Bhimpur-Padanpur, Jatni, Khorda, Bhubaneswar 752050, Odisha, India
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6
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Unveiling the thermodynamic signature underlying the interaction of human serum albumin with sub-micellar concentrations of a surface active ionic liquid. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2020.114078] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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7
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Kundu P, Das S, Chattopadhyay N. Switching from endogenous to exogenous delivery of a model drug to DNA through micellar engineering. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2020; 203:111765. [PMID: 31923806 DOI: 10.1016/j.jphotobiol.2019.111765] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2019] [Revised: 12/24/2019] [Accepted: 12/24/2019] [Indexed: 10/25/2022]
Abstract
A potential strategy has been demonstrated, for the first time, for switching the mode of delivery of drugs or small molecular systems from endogenous to exogenous, simply by engineering the chain length of micellar carriers. Ethidium bromide (EB) is exploited as the model drug which has been successfully delivered to natural DNA through endogenous and exogenous modes by tuning the chain length of anionic sodium n-alkyl sulfate micelles. β-cyclodextrin (β-CD) is exploited as an extrinsic stimulant for the exogenous delivery of EB to DNA. Multi-spectroscopic techniques involving absorption, emission, fluorescence anisotropy, fluorescence decay analysis, circular dichroism, DNA helix melting etc. have established tuning of the delivery mode between endogenous and exogenous. Differential binding affinity of the model drug with different micelles of varying chain length relative to that with DNA is capitalized to make the switching feasible. Although endogenous mode avoids external stimulant and associated problems, a regulation of the stimulant concentration makes the other mode controllable and quantitative. With appropriate choice of carrier micelle and modulation of this developed strategy can radically change the therapeutic research enabling one to take a control over the drug delivery mode to exploit the advantage of one or the other selectively, whenever required.
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Affiliation(s)
- Pronab Kundu
- Department of Chemistry, Jadavpur University, Kolkata 700 032, India
| | - Sinjan Das
- Department of Chemistry, Jadavpur University, Kolkata 700 032, India
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8
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Senthil SK, Murugan PK, Selvam S, Chandhana J, Satheesh Babu T, Kandasamy E. Fluorescence spectroscopic analysis of heavy metal induced protein denaturation. ACTA ACUST UNITED AC 2020. [DOI: 10.1016/j.matpr.2020.04.693] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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9
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Kundu P, Das S, Chattopadhyay N. Managing efficacy and toxicity of drugs: Targeted delivery and excretion. Int J Pharm 2019; 565:378-390. [DOI: 10.1016/j.ijpharm.2019.04.058] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2019] [Revised: 04/17/2019] [Accepted: 04/19/2019] [Indexed: 01/03/2023]
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10
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Islam MM, Barik S, Sarkar M. Probing the Interactions of 1-Alkyl-3-methylimidazolium Tetrafluoroborate (Alkyl = Octyl, Hexyl, Butyl, and Ethyl) Ionic Liquids with Bovine Serum Albumin: An Alkyl Chain Length-Dependent Study. J Phys Chem B 2019; 123:1512-1526. [DOI: 10.1021/acs.jpcb.8b10795] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Mullah Muhaiminul Islam
- School of Chemical Sciences, National Institute of Science Education and Research, Bhubaneswar, HBNI, Bhimpur-Padanpur,
Jatni, Khurda 752050, Odisha, India
| | - Sahadev Barik
- School of Chemical Sciences, National Institute of Science Education and Research, Bhubaneswar, HBNI, Bhimpur-Padanpur,
Jatni, Khurda 752050, Odisha, India
| | - Moloy Sarkar
- School of Chemical Sciences, National Institute of Science Education and Research, Bhubaneswar, HBNI, Bhimpur-Padanpur,
Jatni, Khurda 752050, Odisha, India
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11
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Mohapatra M, Mishra AK. Excited state proton transfer based fluorescent molecular probes and their application in studying lipid bilayer membranes. Photochem Photobiol Sci 2019; 18:2830-2848. [DOI: 10.1039/c9pp00294d] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
The distribution and prototropic equilibria of 1-naphthol (NpOH) in lipid bilayer membrane.
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Affiliation(s)
| | - Ashok Kumar Mishra
- Department of Chemistry
- Indian Institute of Technology Madras
- Chennai 600036
- India
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12
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Chandra F, Kumar P, Koner AL. Encapsulation and modulation of protolytic equilibrium of β-carboline-based norharmane drug by cucurbit[7]uril and micellar environments for enhanced cellular uptake. Colloids Surf B Biointerfaces 2018; 171:530-537. [PMID: 30096474 DOI: 10.1016/j.colsurfb.2018.07.061] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2018] [Revised: 05/18/2018] [Accepted: 07/26/2018] [Indexed: 02/08/2023]
Abstract
The effect of supramolecular nanocavity on photophysical and acid-dissociation properties of Norharmane (NHM), a physiologically important, anxiety control and memory-enhancing β-carboline-based drug, has been investigated using steady-state absorption and fluorescence spectroscopy. Self-assembled organization derived from surfactants and rigid water-soluble macrocyclic host Cucurbit[7]uril (CB7) have been selected for this investigation. The confined-space offered by the supramolecular assemblies modulates the pKa value of NHM (up to 3 units) as it can exist in two protolytic forms at near neutral pH. Therefore, the pH-dependent binding properties, modulation of pKa value and its consequences on the photophysical, chemical and solubility properties are investigated in detail. This investigation shows a large shift in the protolytic equilibrium which in turn causes ca. 15 times solubility-enhancement at near neutral pH. Moreover, the effect of enhanced solubility has been further investigated by the augmentation in the cellular uptake of NHM entrapped inside CB7. Thus, the modulation of the acid-base properties and solubility of β-carboline-based drugs will have immense potential for their formulation, cellular uptake and bioavailability.
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Affiliation(s)
- Falguni Chandra
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal 462 066, Madhya Pradesh, India.
| | - Prashant Kumar
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal 462 066, Madhya Pradesh, India
| | - Apurba L Koner
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal 462 066, Madhya Pradesh, India.
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13
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Ma YZ, Yang YF, Shi W, Song YZ, Li YQ. The order of multiple excited state proton transfer in ternary complex of norharmane and acetic acids. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 202:30-35. [PMID: 29777931 DOI: 10.1016/j.saa.2018.05.035] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2017] [Revised: 05/06/2018] [Accepted: 05/08/2018] [Indexed: 06/08/2023]
Abstract
Dolores Reyman et al. found the norharmane (9H-pyrido [3,4-b] indole) (NHM) and two acetic acid molecules can form the ternary complex (NHM-2A) in component solvent of dichloromethane and acetic acid via the hydrogen bond chain (J. Lumin. 2014, 148, 64). But the specific reaction details during this process were rarely reported. In this study, we will give an insight into the reasons which promote the occurrence of this reaction as well as its reaction order. The hydrogen bond enhancing behavior in first excited state (S1) is verified through the analysis of geometric configurations, infrared spectra, frontier molecular orbitals and potential energy curves. The absorption and fluorescence spectra we calculated are well coincident with the experimental results. Meanwhile, it is obvious that the hydrogen bond intensity is gradually enhanced from N1H2⋯O3, O4H5⋯O6 to O7H8⋯N9 by analyzing the reduced density gradient (RDG) isosurface. The hydrogen bond strengthening mechanism has been confirmed in which the hydrogen bond interaction acts as driving force for excited state proton transfer (ESPT) reaction. In order to provide a reliable description of the reaction energy profiles, we compare the barrier differences obtained by m062x and B3LYP methods. We might safely draw the conclusion that the multiple ESPT is a gradual process initiated by the proton transfer of O7H8⋯N9. And we further proof the ESPT process can be completed via the NHM-2A → NHM-2AS → NHM-2AD → NHM-2AT in S1 state. Theoretical research of NHM-2A has been carried out by density functional theory (DFT) and time-dependent density functional theory (TDDFT). It is worth noting that we predicted that the fluorescence at 400 nm observed in experiment is more likely to be emitted by NHM-2AS in S1 state.
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Affiliation(s)
- Yan-Zhen Ma
- Department of Physics, Liaoning University, Shenyang 110036, China
| | - Yun-Fan Yang
- Department of Physics, Liaoning University, Shenyang 110036, China
| | - Wei Shi
- Department of Physics, Liaoning University, Shenyang 110036, China
| | - Yu-Zhi Song
- School of Physics and Electronics, Shandong Normal University, Jinan 250014, China.
| | - Yong-Qing Li
- Department of Physics, Liaoning University, Shenyang 110036, China.
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14
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Kundu P, Chattopadhyay N. Unraveling the binding interaction of a bioactive pyrazole-based probe with serum proteins: Relative concentration dependent 1:1 and 2:1 probe-protein stoichiometries. Biophys Chem 2018; 240:70-81. [DOI: 10.1016/j.bpc.2018.06.001] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2018] [Revised: 05/31/2018] [Accepted: 06/02/2018] [Indexed: 11/17/2022]
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15
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Li G, Zheng S, Chen Y, Hou Z, Huang G. Reliable Tracking In-Solution Protein Unfolding via Ultrafast Thermal Unfolding/Ion Mobility-Mass Spectrometry. Anal Chem 2018; 90:7997-8001. [PMID: 29894165 DOI: 10.1021/acs.analchem.8b00859] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Sequential unfolding of monomeric proteins is important for the global understanding of local conformational elements (e.g., secondary structures and domain connections) within those protein assemblies. Ion mobility-mass spectrometry (IM-MS) is an emerging and promising technique for probing gradual protein structural perturbations in the gas phase. However, it is still challenging to track sequential unfolding in the solution phase. Here, we extended IM-MS to track in-solution sequential unfolding of monomeric proteins having single and/or multidomains. The present method combines ultrafast local heating effect (LHE)-driven sequential unfolding with IM-MS identification. Protein sequential unfolding in solution is demonstrated by the rapid and controllable IM-MS data switch between native and gradually unfolded states. Our results show that LHE induces gradual protein conformational transitions associated with biological functions, where IM-MS tracks the sequential unfolding of monomeric proteins.
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16
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Malarkani K, Sarkar I, Selvam S. Denaturation studies on bovine serum albumin-bile salt system: Bile salt stabilizes bovine serum albumin through hydrophobicity. J Pharm Anal 2018; 8:27-36. [PMID: 29568665 PMCID: PMC5859114 DOI: 10.1016/j.jpha.2017.06.007] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2016] [Revised: 06/14/2017] [Accepted: 06/21/2017] [Indexed: 11/25/2022] Open
Abstract
Protein denaturation is under intensive research, since it leads to neurological disorders of severe consequences. Avoiding denaturation and stabilizing the proteins in their native state is of great importance, especially when proteins are used as drug molecules or vaccines. It is preferred to add pharmaceutical excipients in protein formulations to avoid denaturation and thereby stabilize them. The present study aimed at using bile salts (BSs), a group of well-known drug delivery systems, for stabilization of proteins. Bovine serum albumin (BSA) was taken as the model protein, whose association with two BSs, namely sodium cholate (NaC) and sodium deoxycholate (NaDC), was studied. Denaturation studies on the pre-formed BSA-BS systems were carried out under chemical and physical denaturation conditions. Urea was used as the chemical denaturant and BSA-BS systems were subjected to various temperature conditions to understand the thermal (physical) denaturation. With the denaturation conditions prescribed here, the data obtained is informative on the association of BSA-BS systems to be hydrophobic and this effect of hydrophobicity plays an important role in stabilizing the serum albumin in its native state under both chemical and thermal denaturation.
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Affiliation(s)
| | - Ivy Sarkar
- Department of Chemistry, Indian Institute of Technology Madras, Chennai 600036, India
| | - Susithra Selvam
- Department of Chemistry, Vel Tech University, Avadi, Chennai 600062, India
- Department of Chemistry, PSG College of Technology, Peelamedu, Coimbatore 641004, India
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17
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Lan RF, Yang YF, Ma YZ, Li YQ. The theoretical study of excited-state intramolecular proton transfer of 2,5-bis(benzoxazol-2-yl)thiophene-3,4-diol. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2017; 183:37-44. [PMID: 28433832 DOI: 10.1016/j.saa.2017.04.018] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2016] [Revised: 04/12/2017] [Accepted: 04/15/2017] [Indexed: 06/07/2023]
Abstract
The symmetrical structures 2,5-bis(benzoxazol-2-yl)thiophene-3,4-diol (BBTD) can take shape two intramolecular hydrogen bonds in chloroform. In order to research the molecular dynamic behavior of BBTD upon photo-induced process, we utilize density functional theory (DFT) and time-dependent density functional theory (TDDFT) to complete theoretical calculation. Through the comparison of bond length, bond angle, IR spectra, and frontier molecular orbitals between ground state (S0) and first excited state (S1), it clearly indicates that photoexcitation have slightly influence for intensity of hydrogen bond. For the sake of understanding the mechanism of excited state intramolecular proton transfer (ESIPT) of BBTD in chloroform, potential energy surfaces have been scanned along with the orientation of O1-H2 and O4-H5 in S0 and S1 state, respectively. A intrigued hydrogen bond dynamic phenomenon has been found that ESIPT of BBTD is not a synergetic double proton transfer process, but a stepwise single proton transfer process BBTD→BBTD-S→BBTD-D. Moreover, the proton transfer process of BBTD-S→BBTD-D is easier to occur than that of BBTD→BBTD-S in S1 state.
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Affiliation(s)
- Rui-Fang Lan
- Department of Physics, Liaoning University, Shenyang 110036, PR China
| | - Yun-Fan Yang
- Department of Physics, Liaoning University, Shenyang 110036, PR China; State Key Lab of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Yan-Zhen Ma
- Department of Physics, Liaoning University, Shenyang 110036, PR China
| | - Yong-Qing Li
- Department of Physics, Liaoning University, Shenyang 110036, PR China.
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18
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Sun Q, He J, Yang H, Li S, Zhao L, Li H. Analysis of binding properties and interaction of thiabendazole and its metabolite with human serum albumin via multiple spectroscopic methods. Food Chem 2017; 233:190-196. [PMID: 28530565 DOI: 10.1016/j.foodchem.2017.04.119] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2016] [Revised: 03/11/2017] [Accepted: 04/19/2017] [Indexed: 12/31/2022]
Abstract
Thiabendazole (TBZ), which is oxidized into 5-hydroxythiabendazole (5-OH-TBZ) in vivo, is a commonly used food preservative. Interactions of TBZ and 5-OH-TBZ with human serum albumin (HSA) were comprehensively studied via multiple spectroscopic methods and molecular docking. This study focussed on the mechanistic and structural information on binding of TBZ and 5-OH-TBZ to HSA to evaluate the impact of the food additive on HSA. 1H NMR spectra of the two ligands showed the binding exists. ITC and fluorescence spectroscopy results revealed that TBZ was a stronger ligand, with a binding constant of 105l/mol and formed a more stable complex with HSA than did 5-OH-TBZ via electrostatic interaction. Spectroscopic results (UV-vis, FT-IR, and CD) showed that TBZ and 5-OH-TBZ caused conformational changes in HSA, in which α-helix and β-turn transformed into β-sheet, causing HSA structure to loosen. Docking programs showed that both TBZ and 5-OH-TBZ bound to HSA via IB.
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Affiliation(s)
- Qiaomei Sun
- College of Chemical Engineering, Sichuan University, Chengdu 610065, China
| | - Jiawei He
- College of Chemical Engineering, Sichuan University, Chengdu 610065, China
| | - Hongqin Yang
- College of Chemical Engineering, Sichuan University, Chengdu 610065, China
| | - Shanshan Li
- College of Chemical Engineering, Sichuan University, Chengdu 610065, China
| | - Ludan Zhao
- College of Chemical Engineering, Sichuan University, Chengdu 610065, China
| | - Hui Li
- College of Chemical Engineering, Sichuan University, Chengdu 610065, China.
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19
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Naldi M, Baldassarre M, Domenicali M, Bartolini M, Caraceni P. Structural and functional integrity of human serum albumin: Analytical approaches and clinical relevance in patients with liver cirrhosis. J Pharm Biomed Anal 2017; 144:138-153. [PMID: 28465079 DOI: 10.1016/j.jpba.2017.04.023] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2016] [Revised: 04/04/2017] [Accepted: 04/15/2017] [Indexed: 02/08/2023]
Abstract
Human serum albumin (HSA) is the most abundant circulating plasma protein. Besides a significant contribution to the osmotic pressure, it is also involved in the fine regulation of many other physiological processes, including the balance of the redox state, the inflammatory and/or immunological responses, and the pharmacokinetic and pharmacodynamics of many drugs. Growing evidence suggests that HSA undergoes structural and functional damage in diseases characterized by an enhanced systemic inflammatory response and oxidative stress, as it occurs in chronic liver disease. Based on their clinical relevance, this review provides a summary of the most common post-translational modifications affecting HSA structural integrity and functions and their clinical relevance in the field of liver disease. The review also provides a critical description of the analytical approaches employed for the investigation of conformational alterations and the identification/quantitation of specific post-translational modifications affecting HSA. Finally, the analytical methods available for the assessment of two of the most clinically relevant non-oncotic properties of HSA, namely the binding capacity and the antioxidant activity, are critically reviewed. Among the available techniques particular attention is given to those proposed for the in vitro and in vivo investigation of structurally modified albumin.
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Affiliation(s)
- Marina Naldi
- Department of Pharmacy and Biotechnology, Alma Mater Studiorum University of Bologna, Via Belmeloro 6, 40126, Italy; Center for Applied Biomedical Research (C.R.B.A.), S. Orsola-Malpighi Hospital, Via Massarenti 9, 40138 Bologna, Italy
| | - Maurizio Baldassarre
- Center for Applied Biomedical Research (C.R.B.A.), S. Orsola-Malpighi Hospital, Via Massarenti 9, 40138 Bologna, Italy; Department of Medical and Surgical Sciences, Alma Mater Studiorum University of Bologna, Via Massarenti 9, 40138, Italy
| | - Marco Domenicali
- Center for Applied Biomedical Research (C.R.B.A.), S. Orsola-Malpighi Hospital, Via Massarenti 9, 40138 Bologna, Italy; Department of Medical and Surgical Sciences, Alma Mater Studiorum University of Bologna, Via Massarenti 9, 40138, Italy
| | - Manuela Bartolini
- Department of Pharmacy and Biotechnology, Alma Mater Studiorum University of Bologna, Via Belmeloro 6, 40126, Italy
| | - Paolo Caraceni
- Center for Applied Biomedical Research (C.R.B.A.), S. Orsola-Malpighi Hospital, Via Massarenti 9, 40138 Bologna, Italy; Department of Medical and Surgical Sciences, Alma Mater Studiorum University of Bologna, Via Massarenti 9, 40138, Italy.
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20
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Feng J, Wu S, Wang H, Liu S. Gliadin nanoparticles stabilized by a combination of thermally denatured ovalbumin with gemini dodecyl O-glucoside: The modulating effect of cosurfactant. Colloids Surf A Physicochem Eng Asp 2017. [DOI: 10.1016/j.colsurfa.2016.12.024] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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21
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Gregory DA, Zhang Y, Smith PJ, Zhao X, Ebbens SJ. Reactive Inkjet Printing of Biocompatible Enzyme Powered Silk Micro-Rockets. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2016; 12:4048-4055. [PMID: 27345008 DOI: 10.1002/smll.201600921] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2016] [Revised: 04/25/2016] [Indexed: 06/06/2023]
Abstract
Inkjet-printed enzyme-powered silk-based micro-rockets are able to undergo autonomous motion in a vast variety of fluidic environments including complex media such as human serum. By means of digital inkjet printing it is possible to alter the catalyst distribution simply and generate varying trajectory behavior of these micro-rockets. Made of silk scaffolds containing enzymes these micro-rockets are highly biocompatible and non-biofouling.
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Affiliation(s)
- David A Gregory
- Department of Chemical and Biological Engineering, University of Sheffield, Sheffield, Mappin Street, S1 3JD, UK
| | - Yu Zhang
- Department of Chemical and Biological Engineering, University of Sheffield, Sheffield, Mappin Street, S1 3JD, UK
| | - Patrick J Smith
- Department of Mechanical Engineering, University of Sheffield, Sheffield, 64 Garden Street, S1 4BJ, UK
| | - Xiubo Zhao
- Department of Chemical and Biological Engineering, University of Sheffield, Sheffield, Mappin Street, S1 3JD, UK
- School of Pharmaceutical Engineering and Life Science, Changzhou University, Changzhou, 213164, China
| | - Stephen J Ebbens
- Department of Chemical and Biological Engineering, University of Sheffield, Sheffield, Mappin Street, S1 3JD, UK
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22
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de Lima SV, de Oliveira HP, de Melo CP. Electrical impedance monitoring of protein unfolding. RSC Adv 2016. [DOI: 10.1039/c6ra20901g] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023] Open
Abstract
We have applied electrical impedance spectroscopy (EIS) to investigate how the dielectric characteristics of protein aqueous solutions respond to varying amounts of a co-dissolved surfactant.
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Affiliation(s)
| | - Helinando P. de Oliveira
- Instituto de Pesquisa em Ciência dos Materiais
- Universidade Federal do Vale do São Francisco
- Juazeiro
- Brazil
| | - Celso P. de Melo
- Departamento de Física
- Universidade Federal de Pernambuco
- Recife
- Brazil
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23
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Kundu P, Ghosh S, Das S, Chattopadhyay N. Cyclodextrin induced controlled delivery of a biological photosensitizer from a nanocarrier to DNA. Phys Chem Chem Phys 2016; 18:3685-93. [DOI: 10.1039/c5cp06174a] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Addition of β-cyclodextrin to the micelle bound phenosafranin in the presence of ctDNA leads to quantitative transfer of the fluorophore from the micelle to the DNA.
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Affiliation(s)
- Pronab Kundu
- Department of Chemistry
- Jadavpur University
- Kolkata-700032
- India
| | - Saptarshi Ghosh
- Department of Chemistry
- Jadavpur University
- Kolkata-700032
- India
| | - Sinjan Das
- Department of Chemistry
- Jadavpur University
- Kolkata-700032
- India
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24
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Bera S, Naskar A, Pal M, Jana S. Low temperature synthesis of graphene hybridized surface defective hierarchical core–shell structured ZnO hollow microspheres with long-term stable and enhanced photoelectrochemical activity. RSC Adv 2016. [DOI: 10.1039/c6ra03410a] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Time dependent structural change (solid → core–shell → hollow) of in situ formed ZnO–graphene (ZG) microspheres by low temperature solution process and their photoelectrochemical stability.
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Affiliation(s)
- Susanta Bera
- Sol-Gel Division
- CSIR-Central Glass and Ceramic Research Institute
- Kolkata 700 032
- India
| | - Atanu Naskar
- Sol-Gel Division
- CSIR-Central Glass and Ceramic Research Institute
- Kolkata 700 032
- India
| | - Moumita Pal
- Sol-Gel Division
- CSIR-Central Glass and Ceramic Research Institute
- Kolkata 700 032
- India
| | - Sunirmal Jana
- Sol-Gel Division
- CSIR-Central Glass and Ceramic Research Institute
- Kolkata 700 032
- India
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25
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Green AM, Abelt CJ. Dual-sensor fluorescent probes of surfactant-induced unfolding of human serum albumin. J Phys Chem B 2015; 119:3912-9. [PMID: 25710498 PMCID: PMC5597305 DOI: 10.1021/jp511252y] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Two extrinsic fluorescent probes, 3-(dimethylamino)-8,9,10,11-tetrahydro-7H-cyclohepta[a]naphthalen-7-one (1) and 7-(dimethylamino)-2,3-dihydrophenanthren-4(1H)-one (2), are used to probe the unfolding of human serum albumin by sodium dodecyl sulfate (SDS). These probes respond separately to the polarity and H-bond-donating ability of their surroundings. Competitive binding experiments show that fluorophore 1 binds to site I (domain IIA) and 2 binds to site II (domain IIIA). The local acidity of 1 in site I is out of the sensing range of 1, whereas the local acidity of 2 in site II is calculated to be nearly zero on Catalan's solvent acidity index. Both probes show that the first two equivalents of bound SDS result in a decrease in the local polarity of the binding sites. Each subsequent equivalent of SDS gives rise to a dramatic increase in polarity until HSA is saturated with seven molecules of SDS at the end of the specific binding domain. Compound 2 experiences an increase of acidity of 0.10 on Catalan's solvent acidity index through seven equivalents of SDS, but the local acidity for 1 is still out of range. The increase in acidity experienced by 2 is greater than the increase in polarity. This result is consistent with greater exposure of the carbonyl group in 2, but not the bulk of 2, to the aqueous solvent in site II of the SDS-saturated HSA complex.
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Affiliation(s)
- Amy M Green
- Department of Chemistry, College of William and Mary , Williamsburg, Virginia 23185, United States
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