1
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S Al-Otaibi J, Mary YS, Mary YS, Cristina Gamberini M. SERS analysis, DFT, and solution effects regarding the structural and optical characteristics of folic acid biomolecule adsorbed on a Cu 3 metal cluster. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 313:124161. [PMID: 38493513 DOI: 10.1016/j.saa.2024.124161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2024] [Revised: 03/07/2024] [Accepted: 03/13/2024] [Indexed: 03/19/2024]
Abstract
The optical characteristics of folic acid (ABP) and metal clusters of copper (Cu3) at various locations were investigated by means of density functional theory (DFT) computations. Mulliken charge analysis and molecular electrostatic potential (MEP) surface show how charge moves from Cu3 to ABP through the various groups. The peak in the UV-Vis spectra of ABP-Cu3 is caused by bonding and anti-bonding orbitals. In both vacuum and aqueous conditions, the polarizability values of ABP-Cu3 cluster are significantly higher than those of pure ABP, indicating a possible enhancement of the nonlinear optical (NLO) effect. Our research investigates the possibility of using ABP adsorbed metal clusters for NLO materials. Surface enhanced Raman scattering (SERS) in the ABP adsorbed metal clusters enhances the vibrational modes of ABP. Adsorption energies are found to be in the range -17.08 to -58.52 kcal/mol in vacuum and -53.34 to -93.44 kcal/mol in aqueous medium for the different configurations for ABP-Cu3. It indicates that metal clusters adsorbed by ABP are stable in the aqueous media. Experimental IR and UV-Vis of ABP is in agreement with theoretically predicted ones.
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Affiliation(s)
- Jamelah S Al-Otaibi
- Department of Chemistry, College of Science, Princess Nourah Bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia.
| | - Y Sheena Mary
- Department of Physics, FMN College (Autonomous), Kollam, Kerala, University of Kerala, India
| | | | - Maria Cristina Gamberini
- Department of Life Sciences, University of Modena and Reggio Emilia, via G. Campi 103, 41125 Modena, Italy
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2
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Perera SM, Aikawa T, Shaner SE, Moran SD, Wang L. Effects of the Intramolecular Group and Solvent on Vibrational Coupling Modes and Strengths of Fermi Resonances in Aryl Azides: A DFT Study of 4-Azidotoluene and 4-Azido- N-phenylmaleimide. J Phys Chem A 2023; 127:8911-8921. [PMID: 37819373 DOI: 10.1021/acs.jpca.3c06312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/13/2023]
Abstract
The high transition dipole strength of the azide asymmetric stretch makes aryl azides good candidates as vibrational probes (VPs). However, aryl azides have complex absorption profiles due to Fermi resonances (FRs). Understanding the origin and the vibrational modes involved in FRs of aryl azides is critically important toward developing them as VPs for studies of protein structures and structural changes in response to their surroundings. As such, we studied vibrational couplings in 4-azidotoluene and 4-azido-N-phenylmaleimide in two solvents, N,N-dimethylacetamide and tetrahydrofuran, to explore the origin and the effects of intramolecular group and solvent on the FRs of aryl azides using density functional theory (DFT) calculations with the B3LYP functional and seven basis sets, 6-31G(d,p), 6-31+G(d,p), 6-31++G(d,p), 6-311G(d,p), 6-311+G(d,p), 6-311++G(d,p), and 6-311++G(df,pd). Two combination bands consisting of the azide symmetric stretch and another mode form strong FRs with the azide asymmetric stretch for both molecules. The FR profile was altered by replacing the methyl group with maleimide. Solvents change the relative peak position and intensity more significantly for 4-azido-N-phenylmaleimide, which makes it a more sensitive VP. Furthermore, the DFT results indicate that a comparison among the results from different basis sets can be used as a means to predict more reliable vibrational spectra.
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Affiliation(s)
- Sathya M Perera
- School of Chemical and Biomolecular Sciences, Southern Illinois University, Carbondale, Illinois 62901, United States
| | - Tenyu Aikawa
- School of Chemical and Biomolecular Sciences, Southern Illinois University, Carbondale, Illinois 62901, United States
| | - Sarah E Shaner
- Department of Chemistry and Physics, Southeast Missouri State University, Cape Girardeau, Missouri 63701, United States
| | - Sean D Moran
- School of Chemical and Biomolecular Sciences, Southern Illinois University, Carbondale, Illinois 62901, United States
| | - Lichang Wang
- School of Chemical and Biomolecular Sciences, Southern Illinois University, Carbondale, Illinois 62901, United States
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3
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Seri̇n S. A comprehensive DFT study on organosilicon-derived fungicide flusilazole and its germanium analogue: A computational approach to Si/Ge bioisosterism. J INDIAN CHEM SOC 2023. [DOI: 10.1016/j.jics.2023.100939] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/17/2023]
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4
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First-principles calculations to investigate structural stability, half-metallic behavior, thermophysical and thermoelectric properties of Co2YAl (Y= Mo, Tc) Full Heusler compounds. COMPUT THEOR CHEM 2022. [DOI: 10.1016/j.comptc.2022.113943] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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5
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Hiremath SM, Basanagouda MM, Khemalapure SS, Rayar A, Rakkasagi AM, Koppal VV, Mahesh R, Jeyaseelan SC. Structural, vibrational, fluorescence spectral features, Hirshfeld surface analysis, docking and drug likeness studies on 4-(2-bromo-4-methyl-phenoxymethyl)-6-methyl-coumarin derivative: Experimental and theoretical studies. J Photochem Photobiol A Chem 2022. [DOI: 10.1016/j.jphotochem.2022.114055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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6
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Afsar N, Jonathan DR, Satheesh D, Manivannan S. Computational description of quantum chemical calculations and pharmacological studies of the synthesized chalcone derivative: A promising NLO material. J INDIAN CHEM SOC 2022. [DOI: 10.1016/j.jics.2022.100655] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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7
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Lyu R, Huang Z, Deng H, Wei Y, Chen J, Zhong K, Wang R, Mou C, Wang L. Exploration for the Optical Properties and Fluorescent Prediction of Nitrotriazole and Nitrofurazan: First-Principles and TD-DFT Calculations. ACS OMEGA 2022; 7:19694-19705. [PMID: 35721979 PMCID: PMC9202023 DOI: 10.1021/acsomega.2c01438] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Accepted: 05/20/2022] [Indexed: 06/15/2023]
Abstract
High-energy materials containing azole and furazan have revealed numerous properties; however, the underlying optical properties need to be solved. Meanwhile, the uncertainty for the choice of fluorescent matrix materials and the flexible situational conditions prompted us to estimate the optical and fluorescent properties of 5,5'-dinitro-2H,2H'-3,3'-bi-1,2,4-triazole (DNBT), 4,4'-dinitroazolefurazan (DNAF), and 4,4'-dinitro-3,3'-4,3'-ter-1,2,5-oxadiazole (DNTO). The first-principles calculation with improved dispersion correction terms and time-dependent density functional theory were utilized to calculate the absorbance and excitation energy of DNBT, DNAF, and DNTO, as well as characterization for their crystal structure, electronic structure, molecular orbitals, and so forth, synchronously. In this work, the absorbance anisotropy of DNBT and DNTO is stronger than that of DNAF. The absorbance for each of the (0,0,1) crystal planes in the three compounds is greater than that of the other two crystal planes. Moreover, DNBT has the maximum absorbance on the (0,0,1) crystal plane. The N-N-H from DNBT and N-O-N from DNTO and DNAF are responsible for these results, while N=N in DNAF weakens the performance of N-O-N. UV-vis spectra show that the maximum absorption wavelengths λmax for DNBT, DNAF, and DNTO are 225, 228, and 201 nm, respectively. The number of five-membered rings and the coplanarity of groups in the intermolecular non-conjugation interaction potentially improve this ability due to the results from the crystal diffraction analysis. In addition, the polarization rate DNBT > DNTO > DNAF based on the molecular orbital analysis and the electrostatic potential calculation implies that the excitation energy of DNBT is less than DNTO, and the excitation energy of DNTO is less than DNAF. This work is beneficial to the expansion of energetic materials into the optical field and the accelerated application process of the related industry.
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Affiliation(s)
- Ruiqi Lyu
- School
of Chemistry and Chemical Engineering, Southwest
Petroleum University, Chengdu 610500, Sichuan, China
| | - Zhiyu Huang
- School
of New Energy and Materials, Southwest Petroleum
University, Chengdu 610500, Sichuan, China
| | - Hongbo Deng
- School
of Chemistry and Chemical Engineering, Southwest
Petroleum University, Chengdu 610500, Sichuan, China
- Oil
& Gas Field Applied Chemistry Key Laboratory of Sichuan Province, Chengdu 610500, Sichuan, China
| | - Yue Wei
- School
of Chemistry and Chemical Engineering, Southwest
Petroleum University, Chengdu 610500, Sichuan, China
| | - Jia Chen
- CNOOC
Enertech Equipment Technology Co., Ltd, Tianjin 300452, China
| | - Kai Zhong
- Institute
of Chemical Materials, China Academy of
Engineering Physics (CAEP), P.O. Box
919-311, Mianyang 621999, Sichuan, China
| | - Rong Wang
- Institute
of Chemical Materials, China Academy of
Engineering Physics (CAEP), P.O. Box
919-311, Mianyang 621999, Sichuan, China
| | - Chuanlin Mou
- School
of Chemistry and Chemical Engineering, Southwest
Petroleum University, Chengdu 610500, Sichuan, China
| | - Linyuan Wang
- School
of Chemistry and Chemical Engineering, Southwest
Petroleum University, Chengdu 610500, Sichuan, China
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8
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Anis I, Dar MS, Bhat GA, Rather GM, Dar MA. Probing the Site-Specific Reactivity and Catalytic Activity of Ag n ( n = 15-20) Silver Clusters. ACS OMEGA 2022; 7:19687-19693. [PMID: 35721984 PMCID: PMC9202251 DOI: 10.1021/acsomega.2c01437] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Accepted: 05/16/2022] [Indexed: 06/15/2023]
Abstract
Density functional theory calculations within the framework of generalized gradient approximation (GGA), meta-GGA, and local functionals were carried out to investigate the reactivity and catalytic activity of Ag n (n = 15-20) clusters. Our results reveal that all the Ag n clusters in this size range, except Ag20, adsorb O2 preferably in the bridged mode with enhanced binding energy as compared to the atop mode. The O2 binding energies range from 0.77 to 0.29 in the bridged mode and from 0.36 to 0.15 eV in the atop mode of O2 adsorption. The strong binding in the case of the bridged mode of O2 adsorption is also reflected in the increase in O-O bond distance. Natural bond orbital charge analysis and vibrational frequency calculations reveal that enhanced charge transfer occurs to the O2 molecule and there is significant red shift in the stretching frequency of O-O bond in the case of the bridged mode of O2 adsorption on the clusters, thereby confirming the above results. Moreover, the simulated CO oxidation reaction pathways show that the oxidation of the CO molecule is highly facile on Ag16 and Ag18 clusters involving small kinetic barriers and higher heats toward CO2 formation.
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Affiliation(s)
- Insha Anis
- Department
of Chemistry, Islamic University of Science
and Technology, Awantipora, Jammu and Kashmir 192122, India
| | - Mohd. Saleem Dar
- Biochemical
Sciences Division, CSIR-National Chemical
Laboratory, Dr. Homi Bhabha Road, Pune 411008, India
| | - Gulzar Ahmad Bhat
- Center
for Interdisciplinary Research and Innovations, University of Kashmir, Srinagar 190006, India
| | - Ghulam Mohammad Rather
- Department
of Chemistry, Islamic University of Science
and Technology, Awantipora, Jammu and Kashmir 192122, India
| | - Manzoor Ahmad Dar
- Department
of Chemistry, Islamic University of Science
and Technology, Awantipora, Jammu and Kashmir 192122, India
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9
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Wang Y, Fu M, Zhang X, Jin D, Zhu S, Wang Y, Wu Z, Bao J, Cheng X, Yang L, Xie L. Cubic Nanogrids for Counterbalance Contradiction among Reorganization Energy, Strain Energy, and Wide Bandgap. J Phys Chem Lett 2022; 13:4297-4308. [PMID: 35532545 DOI: 10.1021/acs.jpclett.2c00827] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Molecular cross-scale gridization and polygridization of organic π-backbones make it possible to install 0/1/2/3-dimensional organic wide-bandgap semiconductors (OWBGSs) with potentially ZnO-like fascinating multifunctionality such as optoelectronic and piezoelectronic features. However, gridization effects are limited to uncover, because the establishment of gridochemistry still requires a long time, which offers a chance to understand the effects with a theoretical method, together with data statistics and machine learning. Herein, we demonstrate a state-of-the-art 3D cubic nanogridon with a size of ∼2 × 2 × 1.5 nm3 to examine its multigridization of π-segments on the bandgap, molecular strain energy (MSE), as well as reorganization energy (ROE). A cubic gridon (CG) consists of a four-armed bifluorene skeleton and a thiophene-containing fused arene plane with the Csp3 spiro-linkage, which can be deinstalled into face-on or edge-on monogrids. As a result, multigridization does not significantly reduce bandgaps (Eg ≥ 4.03 eV), while the MSE increases gradually from 4.72 to 23.83 kcal/mol. Very importantly, the ROE of a CG exhibits an extreme reduction down to ∼28 meV (λ+) that is near the thermal fluctuation energy (∼26 meV). Our multigridization results break through the limitation of the basic positively proportional relationship between reorganization energies and bandgaps in organic semiconductors. Furthermore, multigridization makes it possible to keep the ROE small under the condition of a high MSE in OWBGS that will guide the cross-scale design of multifunctional OWBGSs with both inorganics' optoelectronic performance and organics' mechanical flexibility.
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Affiliation(s)
- Yongxia Wang
- Center for Molecular Systems & Organic Devices (CMSOD), Key Laboratory for Organic Electronics and Information Displays & Institute of Advanced Materials (IAM), Nanjing University of Posts & Telecommunications, 9 Wenyuan Road, Nanjing 210023, China
| | - Mingyang Fu
- Center for Molecular Systems & Organic Devices (CMSOD), Key Laboratory for Organic Electronics and Information Displays & Institute of Advanced Materials (IAM), Nanjing University of Posts & Telecommunications, 9 Wenyuan Road, Nanjing 210023, China
| | - Xiaofei Zhang
- Institute of Agricultural Remote Sensing and Information, Heilongjiang Academy of Agricultural Sciences, Harbin 150086, China
| | - Dong Jin
- Center for Molecular Systems & Organic Devices (CMSOD), Key Laboratory for Organic Electronics and Information Displays & Institute of Advanced Materials (IAM), Nanjing University of Posts & Telecommunications, 9 Wenyuan Road, Nanjing 210023, China
| | - Shiyuan Zhu
- Center for Molecular Systems & Organic Devices (CMSOD), Key Laboratory for Organic Electronics and Information Displays & Institute of Advanced Materials (IAM), Nanjing University of Posts & Telecommunications, 9 Wenyuan Road, Nanjing 210023, China
| | - Yucong Wang
- Center for Molecular Systems & Organic Devices (CMSOD), Key Laboratory for Organic Electronics and Information Displays & Institute of Advanced Materials (IAM), Nanjing University of Posts & Telecommunications, 9 Wenyuan Road, Nanjing 210023, China
| | - Zhenyu Wu
- School of Internet of Things, Nanjing University of Posts & Telecommunications, 9 Wenyuan Road, Nanjing 210023, China
| | - Jianmin Bao
- School of Internet of Things, Nanjing University of Posts & Telecommunications, 9 Wenyuan Road, Nanjing 210023, China
| | - Xiaogang Cheng
- School of Communications and Information Engineering, Nanjing University of Posts & Telecommunications, 9 Wenyuan Road, Nanjing 210023, China
| | - Lei Yang
- Center for Molecular Systems & Organic Devices (CMSOD), Key Laboratory for Organic Electronics and Information Displays & Institute of Advanced Materials (IAM), Nanjing University of Posts & Telecommunications, 9 Wenyuan Road, Nanjing 210023, China
| | - Linghai Xie
- Center for Molecular Systems & Organic Devices (CMSOD), Key Laboratory for Organic Electronics and Information Displays & Institute of Advanced Materials (IAM), Nanjing University of Posts & Telecommunications, 9 Wenyuan Road, Nanjing 210023, China
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10
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Alkhatib Q, Helal W, Afaneh AT. Assessment of time-dependent density functionals for the electronic excitation energies of organic dyes used in DSSCs. NEW J CHEM 2022. [DOI: 10.1039/d2nj00210h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
The absorption spectra modeled as the vertical excitation energies of 13 dye sensitizers used in dye-sensitized solar cells (DSSCs) are benchmarked by means of time-dependent (TD)-DFT, using 36 functionals from different DFT rungs.
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Affiliation(s)
- Qabas Alkhatib
- Department of Chemistry, The University of Jordan, Amman 11942, Jordan
| | - Wissam Helal
- Department of Chemistry, The University of Jordan, Amman 11942, Jordan
| | - Akef T. Afaneh
- Department of Chemistry, Al-Balqa Applied University, 19117 Al-Salt, Jordan
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11
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Walden DM, Khotimchenko M, Hou H, Chakravarty K, Varshney J. Effects of Magnesium, Calcium, and Aluminum Chelation on Fluoroquinolone Absorption Rate and Bioavailability: A Computational Study. Pharmaceutics 2021; 13:594. [PMID: 33919271 PMCID: PMC8143323 DOI: 10.3390/pharmaceutics13050594] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 04/16/2021] [Accepted: 04/16/2021] [Indexed: 01/01/2023] Open
Abstract
Fluoroquinolones (FQs) are a widespread class of broad-spectrum antibiotics prescribed as a first line of defense, and, in some cases, as the only treatment against bacterial infection. However, when administered orally, reduced absorption and bioavailability can occur due to chelation in the gastrointestinal tract (GIT) with multivalent metal cations acquired from diet, coadministered compounds (sucralfate, didanosine), or drug formulation. Predicting the extent to which this interaction reduces in vivo antibiotic absorption and systemic exposure remains desirable yet challenging. In this study, we focus on quinolone interactions with magnesium, calcium and aluminum as found in dietary supplements, antacids (Maalox) orally administered therapies (sucralfate, didanosine). The effect of FQ-metal complexation on absorption rate was investigated through a combined molecular and pharmacokinetic (PK) modeling study. Quantum mechanical calculations elucidated FQ-metal binding energies, which were leveraged to predict the magnitude of reduced bioavailability via a quantitative structure-property relationship (QSPR). This work will help inform clinical FQ formulation design, alert to possible dietary effects, and shed light on drug-drug interactions resulting from coadministration at an earlier stage in the drug development pipeline.
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Affiliation(s)
| | | | | | | | - Jyotika Varshney
- VeriSIM Life, San Francisco, CA 94104, USA; (D.M.W.); (M.K.); (H.H.); (K.C.)
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12
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Fang JW, Liao FJ, Qian Y, Dong CC, Xu LJ, Gong HY. One-Pot Synthesis of 3-Substituted 4 H-Quinolizin-4-ones via Alkyne Substrate Control Strategy. J Org Chem 2021; 86:3648-3655. [PMID: 33372518 DOI: 10.1021/acs.joc.0c02484] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Three-substituted 4H-quinolizin-4-ones were obtained via a facile method with good selectivity and high efficiency. On the basis of alkyne substrate control, the mild and cost-efficient reaction has a broad substrate scope (20 examples, up to 93% yield) and is also easy to scale up. Active sites on the products allow for further modifications. The alkyne substrate control strategy could be further extended to achieve more complex three-substituted 4H-quinolizin-4-one skeletons.
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Affiliation(s)
- Ji-Wang Fang
- Department of Chemistry, Renmin University of China, Zhonggancun Street 59, Beijing 100872, P. R. China.,College of Chemistry, Beijing Normal University, Xinjiekouwaidajie 19, Beijing 100875, P. R. China
| | - Fang-Jie Liao
- College of Chemistry, Beijing Normal University, Xinjiekouwaidajie 19, Beijing 100875, P. R. China
| | - Yang Qian
- Department of Chemistry, Renmin University of China, Zhonggancun Street 59, Beijing 100872, P. R. China
| | - Chao-Chen Dong
- Department of Chemistry, Renmin University of China, Zhonggancun Street 59, Beijing 100872, P. R. China.,College of Chemistry, Beijing Normal University, Xinjiekouwaidajie 19, Beijing 100875, P. R. China
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13
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Biswas A, Mallik BS. Conformational dynamics of aqueous hydrogen peroxide from first principles molecular dynamics simulations. Phys Chem Chem Phys 2020; 22:28286-28296. [PMID: 33295373 DOI: 10.1039/d0cp05451h] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
We performed first principles molecular dynamics simulations of a relatively dilute aqueous hydrogen peroxide (H2O2) solution to examine its structural alterations and relevant dynamics upon solvation. The internal rotation of the OH groups about the O-O bond facilitates the flexible structure of H2O2. Structural calculations reveal dihedral angle fluctuations in the aqueous solution. Water molecules make stronger hydrogen bonds through the hydrogen atom of the solute than the oxygen atom leading to distinct hydrogen bonding configurations inside the first solvation shell. Time-dependent dihedral angle alterations result in conformational changes and the normalized dihedral angle distribution plot displays characteristic peaks at ∼100-120° and ∼230°, illustrating various conformational states. Within the simulation time, flexibility-induced interconversion of hydrogen peroxide gives rise to several cisoid and transoid conformers. In this study, we examine the relative population of the associated conformational states and the lifetime of the cisoid and transoid conformers from the torsion angle variations. We also determine the free energy landscape of the rotational isomerization process in H2O2 and explore two distinct energy barriers during such interconversion.
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Affiliation(s)
- Aritri Biswas
- Department of Chemistry, Indian Institute of Technology Hyderabad, Sangareddy - 502285, Telangana, India.
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14
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Malček M, Kožíšková J, Herich P, Rapta P, Stepanenko I, Arion VB. Formation of metal-radical species upon reduction of late transition metal complexes with heteroleptic ligands: an experimental and theoretical study. NEW J CHEM 2020. [DOI: 10.1039/d0nj02447c] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Three novel transition metal complexes with selenadiazoloquinolones as potential broad spectrum antibiotics in clinical praxis.
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Affiliation(s)
- Michal Malček
- Institute of Physical Chemistry and Chemical Physics
- Faculty of Chemical and Food Technology
- Slovak University of Technology in Bratislava
- SK-812 37 Bratislava
- Slovak Republic
| | - Júlia Kožíšková
- Institute of Physical Chemistry and Chemical Physics
- Faculty of Chemical and Food Technology
- Slovak University of Technology in Bratislava
- SK-812 37 Bratislava
- Slovak Republic
| | - Peter Herich
- Institute of Physical Chemistry and Chemical Physics
- Faculty of Chemical and Food Technology
- Slovak University of Technology in Bratislava
- SK-812 37 Bratislava
- Slovak Republic
| | - Peter Rapta
- Institute of Physical Chemistry and Chemical Physics
- Faculty of Chemical and Food Technology
- Slovak University of Technology in Bratislava
- SK-812 37 Bratislava
- Slovak Republic
| | - Iryna Stepanenko
- Institute of Inorganic Chemistry of the University of Vienna
- A1090 Vienna
- Austria
| | - Vladimir B. Arion
- Institute of Inorganic Chemistry of the University of Vienna
- A1090 Vienna
- Austria
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15
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Mabkhot YN, Al-Showiman SS, Barakat A, Soliman SM, Kheder NA, Alharbi MM, Asayari A, Muhsinah AB, Ullah A, Badshah SL. Computational studies of 2-(4-oxo-3-phenylthiazolidin-2-ylidene)malononitrile. BMC Chem 2019; 13:25. [PMID: 31384774 PMCID: PMC6661733 DOI: 10.1186/s13065-019-0542-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2017] [Accepted: 02/01/2019] [Indexed: 11/10/2022] Open
Abstract
The molecular structure of the 2-(4-oxo-3-phenylthiazolidin-2-ylidene) malononitrile (3) is calculated using DFT B3LYP/6-311G(d, p) method. The calculated geometric parameters are in good agreement with the experimental data. The NBO calculations were performed to predict the natural atomic charges at the different atomic sites and study the different intramolecular charge transfer (ICT) interactions occurring in the studied system. The BD(2)C17-C19 → BD*(2)C14-C15, LP(2)O2 → BD*(1)N5-C9 and LP(1)N5 → BD*(2)C10-C11 ICT interactions causing stabilization of the system by 23.30, 30.63 and 52.48 kcal/mol, respectively. The two intense electronic transition bands observed experimentally at 249 nm and 296 nm are predicted using the TD-DFT calculations at 237.9 nm (f = 0.1618) and 276.4 nm (f = 0.3408), respectively. These electronic transitions are due to H-3 → L (94%) and H → L (95%) excitations, respectively.
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Affiliation(s)
- Yahia N Mabkhot
- 1Department of Pharmaceutical Chemistry, College of Pharmacy, King Khalid University, Abha, 61441 Saudi Arabia
| | - Salim S Al-Showiman
- 2Department of Chemistry, College of Science, King Saud University, P. O. Box 2455, Riyadh, 11451 Saudi Arabia
| | - A Barakat
- 2Department of Chemistry, College of Science, King Saud University, P. O. Box 2455, Riyadh, 11451 Saudi Arabia.,3Department of Chemistry, Faculty of Science, Alexandria University, P.O Box 426, Ibrahimia Alexandria, 21321 Egypt
| | - S M Soliman
- 3Department of Chemistry, Faculty of Science, Alexandria University, P.O Box 426, Ibrahimia Alexandria, 21321 Egypt.,4Department of Chemistry, Rabigh College of Science and Art, King Abdulaziz University, Jeddah, 21589 Saudi Arabia
| | - Nabila A Kheder
- 5Department of Chemistry, Faculty of Science, Cairo University, Giza, 12613 Egypt
| | - Mohammed M Alharbi
- 2Department of Chemistry, College of Science, King Saud University, P. O. Box 2455, Riyadh, 11451 Saudi Arabia
| | - Abdulrahman Asayari
- 6Department of Pharmacognosy, College of Pharmacy, King Khalid University, Abha, 61441 Saudi Arabia
| | - Abdullatif Bin Muhsinah
- 6Department of Pharmacognosy, College of Pharmacy, King Khalid University, Abha, 61441 Saudi Arabia
| | - Asad Ullah
- 7Department of Chemistry, Islamia College University Peshawar, Peshawar, 25120 KPK Pakistan
| | - Syed Lal Badshah
- 7Department of Chemistry, Islamia College University Peshawar, Peshawar, 25120 KPK Pakistan
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NMR investigation and theoretical calculations of the solvent effect on the conformation of valsartan. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.07.031] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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Joined X-ray, spectroscopic and theoretical study of potential antibacterial cyano group containing fluoroquinolone drugs precursors with the focus on the conformational behavior. J Mol Struct 2016. [DOI: 10.1016/j.molstruc.2016.07.055] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Isomerizational and conformational study of 3-fluorophenylamino-2-acetyl propenenitrile (FPAAPN). J Mol Struct 2015. [DOI: 10.1016/j.molstruc.2014.12.056] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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