1
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Zhang X, Li C, Ye HZ, Berkelbach TC, Chan GKL. Performant automatic differentiation of local coupled cluster theories: Response properties and ab initio molecular dynamics. J Chem Phys 2024; 161:014109. [PMID: 38949583 DOI: 10.1063/5.0212274] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2024] [Accepted: 06/12/2024] [Indexed: 07/02/2024] Open
Abstract
In this work, we introduce a differentiable implementation of the local natural orbital coupled cluster (LNO-CC) method within the automatic differentiation framework of the PySCFAD package. The implementation is comprehensively tuned for enhanced performance, which enables the calculation of first-order static response properties on medium-sized molecular systems using coupled cluster theory with single, double, and perturbative triple excitations [CCSD(T)]. We evaluate the accuracy of our method by benchmarking it against the canonical CCSD(T) reference for nuclear gradients, dipole moments, and geometry optimizations. In addition, we demonstrate the possibility of property calculations for chemically interesting systems through the computation of bond orders and Mössbauer spectroscopy parameters for a [NiFe]-hydrogenase active site model, along with the simulation of infrared spectra via ab initio LNO-CC molecular dynamics for a protonated water hexamer.
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Affiliation(s)
- Xing Zhang
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA
| | - Chenghan Li
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA
| | - Hong-Zhou Ye
- Department of Chemistry, Columbia University, New York, New York 10027, USA
| | | | - Garnet Kin-Lic Chan
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA
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2
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Hui WCH, Lemke KH. The sulfur dioxide-water complex: CCSD(T)/CBS anharmonic vibrational spectroscopy of stacked and hydrogen-bonded dimers. J Chem Phys 2024; 160:054307. [PMID: 38341706 DOI: 10.1063/5.0177077] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Accepted: 01/11/2024] [Indexed: 02/13/2024] Open
Abstract
This study examines the structures, energies, and IR vibrational spectra of the sulfur dioxide-water SO2(H2O) complexes by employing coupled cluster theory CCSD(T) with Dunning style correlation consistent type basis sets aug-cc-pV(n+d)Z (n = D, T, Q, 5). Complete basis set (CBS) extrapolations have been carried out to predict binding energies for two isomers of the SO2(H2O) complex: a stacked global minimum (1A) structure and a hydrogen-bonded local minimum (1B) structure. The CCSD(T)/CBS extrapolation predicts an intermolecular S-O distance rS⋯O = 2.827 Å for the stacked isomer, which is in excellent agreement with an experimental measurement of 2.824 Å [K. Matsumura et al., J. Chem. Phys., 91, 5887 (1989)]. The CCSD(T)/CBS binding energy for the stacked dimer 1A and hydrogen-bonded form 1B is De = -4.37 kcal/mol and De = -2.40 kcal/mol, respectively. This study also employs anharmonic VPT2 MP2/aug-cc-pV(n+d)Z level corrections to CCSD(T)/aug-cc-pV(n+d)Z vibrational frequencies in both forms of SO2(H2O). The anharmonic CCSD(T)/aug-cc-pV(Q+d)Z OH stretching frequencies in the stacked structure 1A are 3743 cm-1 (ν3) and 3647 cm-1 (ν1), and these align well with the recorded IR spectroscopic values of 3745 and 3643 cm-1, respectively [C. Wang et al., J. Phys. Chem. Lett., 13, 5654 (2022)]. If we combine CCSD(T)/aug-cc-pV(n+d)Z De values with VPT2 vibrational frequencies, we obtain a new CCSD(T)/aug-cc-pV(Q+d)Z anharmonic dissociation energy D0 = -3.48 kcal/mol for 1A and D0 = -1.74 kcal/mol for 1B. In summary, the results presented here demonstrate that the application of CCSD(T) calculations with aug-cc-pV(n+d)Z basis sets and CBS extrapolations is critical in probing the structure and IR spectroscopic properties of the sulfur dioxide-water complex.
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Affiliation(s)
- Wallace C H Hui
- Department of Earth Sciences, University of Hong Kong, Pokfulam Road, Hong Kong SAR
| | - Kono H Lemke
- Department of Earth Sciences, University of Hong Kong, Pokfulam Road, Hong Kong SAR
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3
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Zhang Y, Wang Y, Xu X, Chen Z, Yang Y. Vibrational Spectra of Highly Anharmonic Water Clusters: Molecular Dynamics and Harmonic Analysis Revisited with Constrained Nuclear-Electronic Orbital Methods. J Chem Theory Comput 2023; 19:9358-9368. [PMID: 38096546 DOI: 10.1021/acs.jctc.3c01037] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2023]
Abstract
Vibrational spectroscopy is widely used to gain insights into structural and dynamic properties of chemical, biological, and materials systems. Thus, an efficient and accurate method to simulate vibrational spectra is desired. In this paper, we justify and employ a microcanonical molecular simulation scheme to calculate the vibrational spectra of three challenging water clusters: the neutral water dimer (H4O2), the protonated water trimer (H7O3+), and the protonated water tetramer (H9O4+). We find that with the accurate description of quantum nuclear delocalization effects through the constrained nuclear-electronic orbital framework, including vibrational mode coupling effects through molecular dynamics simulations can additionally improve the vibrational spectrum calculations. In contrast, without the quantum nuclear delocalization picture, conventional ab initio molecular dynamics may even lead to less accurate results than harmonic analysis.
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Affiliation(s)
- Yuzhe Zhang
- Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin-Madison, 1101 University Avenue, Madison, Wisconsin 53706, United States
| | - Yiwen Wang
- Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin-Madison, 1101 University Avenue, Madison, Wisconsin 53706, United States
| | - Xi Xu
- Center for Advanced Materials Research, Beijing Normal University, Zhuhai 519087, China
| | - Zehua Chen
- Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin-Madison, 1101 University Avenue, Madison, Wisconsin 53706, United States
| | - Yang Yang
- Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin-Madison, 1101 University Avenue, Madison, Wisconsin 53706, United States
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4
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Vogt E, Simkó I, Császár AG, Kjaergaard HG. Quantum Chemical Investigation of the Cold Water Dimer Spectrum in the First OH-Stretching Overtone Region Provides a New Interpretation. J Phys Chem A 2023; 127:9409-9418. [PMID: 37930939 DOI: 10.1021/acs.jpca.3c03705] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2023]
Abstract
Intramolecular vibrational transition wavenumbers and intensities were calculated in the fundamental HOH-bending, fundamental OH-stretching, first OH-stretching-HOH-bending combination, and first OH-stretching overtone (ΔvOH = 2) regions of the water dimer's spectrum. Furthermore, the rotational-vibrational spectrum was calculated in the ΔvOH = 2 region at 10 K, corresponding to the temperature of the existing jet-expansion experiments. The calculated spectrum was obtained by combining results from a full-dimensional (12D) vibrational and a reduced-dimensional vibrational-rotational-tunneling model. The ΔvOH = 2 spectral region is rich in features due to contributions from multiple vibrational-rotational-tunneling sub-bands. Origins of the experimental vibrational bands depend on the assignment of the observed sub-bands. Based on our calculations, we assign the observed sub-bands, and our reassignment leads to new values for the vibrational band origins of the free donor and antisymmetric acceptor OH-stretching first overtones of ∼7227 and ∼7238 cm-1, respectively. The observed bands with origins at 7192.34 and ∼7366 cm-1 are assigned to the symmetric acceptor OH-stretching first overtone and the OH-stretching combination of the donor, respectively.
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Affiliation(s)
- Emil Vogt
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, Copenhagen Ø DK-2100, Denmark
| | - Irén Simkó
- Laboratory of Molecular Structure and Dynamics, Institute of Chemistry ELTE Eötvös Loránd University, Pázmány Péter Sétány 1/A, Budapest H-1117, Hungary
- HUN-REN-ELTE Complex Chemical Systems Research Group, P.O. Box 32, Budapest 112 H-1518, Hungary
| | - Attila G Császár
- Laboratory of Molecular Structure and Dynamics, Institute of Chemistry ELTE Eötvös Loránd University, Pázmány Péter Sétány 1/A, Budapest H-1117, Hungary
- HUN-REN-ELTE Complex Chemical Systems Research Group, P.O. Box 32, Budapest 112 H-1518, Hungary
| | - Henrik G Kjaergaard
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, Copenhagen Ø DK-2100, Denmark
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5
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Huchmala RM, McCoy AB. Exploring the Origins of the Intensity of the OH Stretch-HOH Bend Combination Band in Water. J Phys Chem A 2023; 127:6711-6721. [PMID: 37552561 DOI: 10.1021/acs.jpca.3c02980] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/10/2023]
Abstract
While the intensity of the OH stretching fundamental transition is strongly correlated to hydrogen-bond strength, the intensity of the corresponding transition to the state with one quantum of excitation in both the OH stretching and HOH bending vibrations in the same water molecule shows a much weaker sensitivity to the hydrogen-bonding environment. The origins of this difference are explored through analyses of the contributions of terms in the expansion of the dipole moment to the calculated intensity. It is found that the leading contribution to the stretch-bend intensity involves the second derivative of the dipole moment with respect to the OH bond length and HOH angle. While this is not surprising, the insensitivity of this derivative to the hydrogen-bonding environment is unexpected. Possible contributions of mode mixing are also explored. While mode mixing leads to splittings of the energies of nearly degenerate excited states, it does not result in significant changes in the sum of the intensities of these transitions. Analysis of changes in the partial charges on the hydrogen atoms upon displacement of the HOH angles shows that these charges generally increase with increasing HOH angle. This effect is partially canceled by a decrease in the charge of the hydrogen atom when a hydrogen bond is broken. The extent of this cancellation increases with the hydrogen bond strength, which is reflected in the observed insensitivity of the intensity of the stretch-bend transition to hydrogen-bond strength.
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Affiliation(s)
- Rachel M Huchmala
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Anne B McCoy
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
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6
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Jensen CV, Kjaergaard HG. Gas-Phase Room-Temperature Detection of the tert-Butyl Hydroperoxide Dimer. J Phys Chem A 2023; 127:6476-6485. [PMID: 37527456 DOI: 10.1021/acs.jpca.3c03702] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/03/2023]
Abstract
We have detected the tert-butyl hydroperoxide dimer, (t-BuOOH)2, in the gas phase at room temperature using conventional FTIR techniques. The dimer is identified by an asymmetric absorbance band assigned to the fundamental hydrogen-bound OHb-stretch. The weighted band maximum of the dimer OHb-stretch is located at ∼3452 cm-1, red-shifted by ∼145 cm-1 from the monomer OH-stretching band. The gas-phase dimer assignment is supported by Ar matrix isolation FTIR experiments at 12 K and experiments with a partially deuterated sample. Computationally, we find the lowest energy structure of (t-BuOOH)2 to be a doubly hydrogen bound six-membered ring with non-optimal hydrogen bond angles. We estimate the gas-phase constant of dimer formation, K, to be 0.4 (standard pressure of 1 bar) using the experimental integrated absorbance and a theoretically determined oscillator strength of the OHb-stretching band.
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Affiliation(s)
| | - Henrik G Kjaergaard
- Department of Chemistry, University of Copenhagen, 2100 Copenhagen-Ø, Denmark
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7
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Kreienborg NM, Yang Q, Pollok CH, Bloino J, Merten C. Matrix-isolation and cryosolution-VCD spectra of α-pinene as benchmark for anharmonic vibrational spectra calculations. Phys Chem Chem Phys 2023; 25:3343-3353. [PMID: 36633064 DOI: 10.1039/d2cp04782a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
The inclusion of anharmonicity in vibrational spectral analyis remains associated to small molecular systems with up to a dozen of atoms, with half a dozen of non-hydrogen atoms, typically thesize of propylene oxide. One may see two reasons for this: first of all, larger systems are often thought to be computationally too demanding (high computational costs) for a full anharmonic vibrational analysis. Second, the identification of resonances and their correction is often considered something only expert theoreticians could address because of the lack of unequivocal criteria. In this contribution, we illustrate that resonances can indeed become a complex problem, which can be handled almost transparently thanks to recent advances in vibrational perturbation theory (VPT2). The study also emphasizes the importance and the central role played by experiment in benchmarking novel theoretical approaches. In fact, we herein provide the currently highest resolution VCD spectra available for α- and β-pinene obtained under matrix-isolation conditions and in liquid Xenon as solvent. They are interpreted by VPT2 with novel tests for the identification of resonances. Hence, the study demonstrates the mutual stimulation of advances in both experimental techniques and computational models.
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Affiliation(s)
- Nora M Kreienborg
- Ruhr-Universität Bochum, Fakultät für Chemie und Biochemie, Organische Chemie II, Universitätsstraße 150, 44801 Bochum, Germany.
| | - Qin Yang
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy.
| | - Corina H Pollok
- Ruhr-Universität Bochum, Fakultät für Chemie und Biochemie, Organische Chemie II, Universitätsstraße 150, 44801 Bochum, Germany.
| | - Julien Bloino
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy.
| | - Christian Merten
- Ruhr-Universität Bochum, Fakultät für Chemie und Biochemie, Organische Chemie II, Universitätsstraße 150, 44801 Bochum, Germany.
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8
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König HF, Hausmann H, Schreiner PR. Assessing the Experimental Hydrogen Bonding Energy of the Cyclic Water Dimer Transition State with a Cyclooctatetraene-Based Molecular Balance. J Am Chem Soc 2022; 144:16965-16973. [PMID: 35998326 DOI: 10.1021/jacs.2c06141] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We have conducted an experimental and computational study of cyclooctatetraene-1,4/1,6-dimethanol (1,4 and 1,6) as a molecular balance with the goal in mind to determine the otherwise inaccessible hydrogen bonding energy (HBE) of the cyclic water dimer, which constitutes a transition state. The 1,4/1,6 folding equilibrium is governed by an intramolecular hydrogen bond in the folded 1,6-isomer, in which the OH groups adopt a cyclic planar geometry, akin to the structure of the cyclic water dimer transition state. We characterized hydrogen bonding in 1,6 and reference complexes utilizing SAPT2 + (3)δMP2/aug-cc-pVTZ and selected quantum theory of atoms in molecule descriptors at M06-2XD3(0)/ma-def2-TZVPP. Additionally, we computed HBEs at the DLPNO-CCSD(T)/aug-cc-pVQZ level of theory. We find that hydrogen bonding in 1,6 is very similar to the interaction in the Ci symmetric cyclic water dimer TS, both in magnitude and character. We experimentally determined the Gibbs free energy of the folding process (ΔGeq) in a variety of organic solvents via nuclear magnetic resonance spectroscopy measurements at room temperature. By combining experimentally obtained ΔGeq values with corrections derived from accurate computational methods, we provide estimates for the HBE of cyclic water dimers and the cyclic water dimer TS, as the most stable cyclic water dimer.
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Affiliation(s)
- Henrik Ferdinand König
- Institute of Organic Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392 Giessen, Germany
| | - Heike Hausmann
- Institute of Organic Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392 Giessen, Germany
| | - Peter R Schreiner
- Institute of Organic Chemistry, Justus Liebig University, Heinrich-Buff-Ring 17, 35392 Giessen, Germany
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9
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Bready CJ, Vanovac S, Odbadrakh TT, Shields GC. Amino Acids Compete with Ammonia in Sulfuric Acid-Based Atmospheric Aerosol Prenucleation: The Case of Glycine and Serine. J Phys Chem A 2022; 126:5195-5206. [PMID: 35896016 DOI: 10.1021/acs.jpca.2c03539] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We present a computational investigation of the sulfuric acid, glycine, serine, ammonia, and water system to understand if this system can form prenucleation clusters, which are precursors to larger aerosols in the atmosphere. We have performed a comprehensive configurational search of all possible clusters in this system, starting with the four different monomers and zero to five waters. Accurate Gibbs free energies of formation have been calculated with the DLPNO-CCSD(T)/complete basis set (CBS) method on ωb97xd/6-31++G** geometries. For the dry dimers of sulfuric acid, the weakest base, serine, is found to form the most stable complex, which is a consequence of the strong di-ionic complex formed between the bisulfate ion and the protonated serine cation. For the dry dimers without sulfuric acid, the glycine-serine complex is more stable than the glycine-ammonia or serine-ammonia complexes, stemming from the detailed structure and not related to base strength. For the larger complexes, sulfuric acid deprotonates and the proton is shifted to glycine, serine, or ammonia. The two amino acids and ammonia are almost interchangeable and there is no easy way to predict which molecule will be protonated without the calculated results. Assuming reasonable starting concentrations and a closed system of sulfuric acid, glycine, serine, ammonia, and five waters, we predict the concentrations of all possible complexes at two temperatures spanning the troposphere. The most negative ΔG° values are a function of the detailed molecular interactions of these clusters. These details are more important than the base strength of ammonia, glycine, and serine.
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Affiliation(s)
- Conor J Bready
- Department of Chemistry, Furman University, Greenville, South Carolina 29613, United States
| | - Sara Vanovac
- Department of Chemistry, Furman University, Greenville, South Carolina 29613, United States
| | - Tuguldur T Odbadrakh
- Department of Chemistry, Furman University, Greenville, South Carolina 29613, United States
| | - George C Shields
- Department of Chemistry, Furman University, Greenville, South Carolina 29613, United States
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10
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Vogt E, Simkó I, Császár AG, Kjaergaard HG. Reduced-dimensional vibrational models of the water dimer. J Chem Phys 2022; 156:164304. [PMID: 35490001 DOI: 10.1063/5.0090013] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A model based on the finite-basis representation of a vibrational Hamiltonian expressed in internal coordinates is developed. The model relies on a many-mode, low-order expansion of both the kinetic energy operator and the potential energy surface (PES). Polyad truncations and energy ceilings are used to control the size of the vibrational basis to facilitate accurate computations of the OH stretch and HOH bend intramolecular transitions of the water dimer (H2 16O)2. Advantages and potential pitfalls of the applied approximations are highlighted. The importance of choices related to the treatment of the kinetic energy operator in reduced-dimensional calculations and the accuracy of different water dimer PESs are discussed. A range of different reduced-dimensional computations are performed to investigate the wavenumber shifts in the intramolecular transitions caused by the coupling between the intra- and intermolecular modes. With the use of symmetry, full 12-dimensional vibrational energy levels of the water dimer are calculated, predicting accurately the experimentally observed intramolecular fundamentals. It is found that one can also predict accurate intramolecular transition wavenumbers for the water dimer by combining a set of computationally inexpensive reduced-dimensional calculations, thereby guiding future effective-Hamiltonian treatments.
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Affiliation(s)
- Emil Vogt
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Irén Simkó
- Laboratory of Molecular Structure and Dynamics, Institute of Chemistry, ELTE Eötvös Loránd University, Pázmány Péter Sétány 1/A, H-1117 Budapest, Hungary
| | - Attila G Császár
- Laboratory of Molecular Structure and Dynamics, Institute of Chemistry, ELTE Eötvös Loránd University, Pázmány Péter Sétány 1/A, H-1117 Budapest, Hungary
| | - Henrik G Kjaergaard
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
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11
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Roy TK. Performance of Vibrational Self-Consistent Field Theory for Accurate Potential Energy Surfaces: Fundamentals, Excited States, and Intensities. J Phys Chem A 2022; 126:608-622. [PMID: 35050620 DOI: 10.1021/acs.jpca.1c09989] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The performance of vibrational structure calculations beyond harmonic approximation in the framework of the vibrational self-consistent field method with second-order perturbation corrections (VSCF-PT2) is investigated in conjunction with very accurate potential energy surfaces (PESs) given by various coupled-cluster electronic structure theories. The quality of anharmonic calculations depends on the accuracy of the underlying multidimensional PES obtained from its functional form, which is given by the level of electronic structure theory. Two such highest levels of typical coupled-cluster electronic structure methods, CCSD and the ″gold standard″ CCSD(T), along with their variants such as CCD, CR-CCL (completely renormalized CR-CC(2,3) approach), and CCSD(TQ) are tested for the construction of accurate anharmonic potentials without any fitting or ad hoc scaling and using cc-pVTZ basis sets. The accuracy of VSCF-PT2 theory in comparison to experimental values is tested for a series of 16 molecules with 135 fundamental bands, 64 overtones, and combination bands and also for 39 intensities. It is found that CCD and CCSD bind the potential tighter than CCSD(T) and the computed VSCF-PT2 transitions are more blue-shifted showing higher deviation from the experiment. In general, VSCF-PT2 results computed at the CCSD(T) potential offer a good cost/accuracy ratio, with the mean absolute deviation and the mean absolute percentage error with the experiment being ∼16 cm-1 and 1.38, respectively, for fundamentals. Additionally, while the CR-CCL and CCSD(TQ) methods offer similar levels of accuracies as compared to CCSD(T), the former offers a better accuracy/cost ratio than the latter and is a suitable alternative to CCSD(T).
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Affiliation(s)
- Tapta Kanchan Roy
- Department of Chemistry and Chemical Sciences, Central University of Jammu, Rahya-Suchani (Bagla), Samba, Jammu and Kashmir 181143, India
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12
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Vogt E, Kjaergaard HG. Vibrational Spectroscopy of the Water Dimer at Jet-Cooled and Atmospheric Temperatures. Annu Rev Phys Chem 2022; 73:209-231. [PMID: 35044791 DOI: 10.1146/annurev-physchem-082720-104659] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The vibrational spectroscopy of the water dimer provides an understanding of basic hydrogen bonding in water clusters, and with about one water dimer for every 1,000 water molecules, it plays a critical role in atmospheric science. Here, we review how the experimental and theoretical progress of the past decades has improved our understanding of water dimer vibrational spectroscopy under both cold and warm conditions. We focus on the intramolecular OH-stretching transitions of the donor unit, because these are the ones mostly affected by dimer formation and because their assignment has proven a challenge. We review cold experimental results from early matrix isolation to recent mass-selected jet expansion techniques and, in parallel, the improvements in the theoretical anharmonic models. We discuss and illustrate changes in the vibrational spectra of complexes upon increasing temperature, and the difficulties in recording and calculating these spectra. In the atmosphere, water dimer spectra at ambient temperature are crucial. Expected final online publication date for the Annual Review of Physical Chemistry, Volume 73 is April 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
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Affiliation(s)
- Emil Vogt
- Department of Chemistry, University of Copenhagen, Copenhagen, Denmark;
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13
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Anharmonicity modeling in hydrogen bonded solvent dimers. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.116735] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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14
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Tupikina EY, M Tolstoy P, A Titova A, A Kostin M, S Denisov G. Estimations of FH···X hydrogen bond energies from IR intensities: Iogansen's rule revisited. J Comput Chem 2021; 42:564-571. [PMID: 33458833 DOI: 10.1002/jcc.26482] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2020] [Revised: 11/25/2020] [Accepted: 01/04/2021] [Indexed: 12/21/2022]
Abstract
In this work the possibility of using the IR intensity of the stretching vibration νs of proton donor group for estimation of hydrogen bond strength was investigated. For a set of complexes with FH···X (X = F, N, O) hydrogen bonds in the wide range of energies (0.1-49.2 kcal/mol) vibrational frequencies νs and their intensities A were calculated (CCSD at complete basis set limit). The validity of the previously proposed linear proportionality between the intensification of the stretching vibration νs in IR spectra and hydrogen bond enthalpy -ΔH = 12.2 ∆ A (A. V. Iogansen, Spectrochimica Acta A 1999) was examined. It is shown that for a range of similar hydrogen bond types with complexation energies ∆E <15 kcal/mol the ∆E( ∆ A ) function remains similar to that proposed in the Iogansen's work, while upon strengthening this dependency becomes significantly nonlinear. We examined two other parameters ( ∆ A ν s and ∆ A ∙ m R ) related to IR intensity as descriptors of hydrogen bond strength which are proportional to transition dipole moment matrix element and mass-independent dipole moment derivative. It was found that the dependency ∆E( ∆ A ν s ) stays linear in the whole studied range of complexation energies and it can be used for evaluation of ∆E from infrared spectral data with the accuracy about 2 kcal/mol. The mass-independent product ∆ A ∙ m R is an appropriate descriptor for sets of complexes with various hydrogen bond types. Simple equations proposed in this work can be used for estimations of hydrogen bond strength in various systems, where experimental thermodynamic methods or direct calculations are difficult or even impossible.
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Affiliation(s)
- Elena Yu Tupikina
- Institute of Chemistry, St. Petersburg State University, St. Petersburg, Russia
| | - Peter M Tolstoy
- Institute of Chemistry, St. Petersburg State University, St. Petersburg, Russia
| | - Anna A Titova
- Institute of Chemistry, St. Petersburg State University, St. Petersburg, Russia
| | - Mikhail A Kostin
- Department of Physics, St. Petersburg State University, St. Petersburg, Russia
| | - Gleb S Denisov
- Department of Physics, St. Petersburg State University, St. Petersburg, Russia
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15
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Franke PR, Stanton JF, Douberly GE. How to VPT2: Accurate and Intuitive Simulations of CH Stretching Infrared Spectra Using VPT2+K with Large Effective Hamiltonian Resonance Treatments. J Phys Chem A 2021; 125:1301-1324. [PMID: 33506678 DOI: 10.1021/acs.jpca.0c09526] [Citation(s) in RCA: 65] [Impact Index Per Article: 21.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
This article primarily discusses the utility of vibrational perturbation theory for the prediction of X-H stretching vibrations with particular focus on the specific variant, second-order vibrational perturbation theory with resonances (VPT2+K). It is written as a tutorial, reprinting most important formulas and providing numerous simple examples. It discusses the philosophy and practical considerations behind vibrational simulations with VPT2+K, including but not limited to computational method selection, cost-saving approximations, approaches to evaluating intensity, resonance identification, and effective Hamiltonian structure. Particular attention is given to resonance treatments, beginning with simple Fermi dyads and gradually progressing to arbitrarily large polyads that describe both Fermi and Darling-Dennison resonances. VPT2+K combined with large effective Hamiltonians is shown to be a reliable framework for modeling the complicated CH stretching spectra of alkenes. An error is also corrected in the published analytic formula for the VPT2 transition moment between the vibrational ground state and triply excited states.
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Affiliation(s)
- Peter R Franke
- Department of Chemistry, University of Florida, Gainesville, Florida 32611, United States.,Department of Chemistry, University of Georgia, Athens, Georgia 30602, United States
| | - John F Stanton
- Department of Chemistry, University of Florida, Gainesville, Florida 32611, United States
| | - Gary E Douberly
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, United States
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16
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Mishra S, Nguyen HQ, Huang QR, Lin CK, Kuo JL, Patwari GN. Vibrational spectroscopic signatures of hydrogen bond induced NH stretch–bend Fermi-resonance in amines: The methylamine clusters and other N–H⋯N hydrogen-bonded complexes. J Chem Phys 2020; 153:194301. [DOI: 10.1063/5.0025778] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Affiliation(s)
- Saurabh Mishra
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
| | - Ha-Quyen Nguyen
- Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 10617, Taiwan
| | - Qian-Rui Huang
- Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 10617, Taiwan
| | - Chih-Kai Lin
- Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 10617, Taiwan
| | - Jer-Lai Kuo
- Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 10617, Taiwan
| | - G. Naresh Patwari
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
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17
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Tupikina EY, Tokhadze KG, Karpov VV, Denisov GS, Tolstoy PM. Stretching force constants as descriptors of energy and geometry of F···HF hydrogen bonds. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 241:118677. [PMID: 32652286 DOI: 10.1016/j.saa.2020.118677] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Revised: 06/23/2020] [Accepted: 06/30/2020] [Indexed: 06/11/2023]
Abstract
In this work applicability of proton donor group stretching vibration force constants ks and intermolecular stretching force constants kσ for evaluations of hydrogen bond strength and geometry are discussed. For a set of 30 complexes with F···HF hydrogen bonds in a wide range 0.5-48 kcal/mol by means of quantum chemical calculations equilibrium geometries, complexation energies, vibrational frequencies and corresponding force constants were calculated (MP2/aug-cc-pVTZ). It is shown, that properties of a hydrogen bond are more strictly correlated with the values of force constants than with vibrational frequencies. Easy-to-use equations for estimations of hydrogen bond energy ∆E and geometry (rFH, rFF) based on ks and kσ values are proposed.
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Affiliation(s)
- Elena Yu Tupikina
- Institute of Chemistry, St. Petersburg State University, 26 Universitetskii pr., Petergof, St. Petersburg 198504, Russia.
| | - Konstantin G Tokhadze
- Department of Physics, St. Petersburg State University, 3 Uljanoyskaya str., Petergof, St. Petersburg 198504, Russia
| | - Valerii V Karpov
- Institute of Chemistry, St. Petersburg State University, 26 Universitetskii pr., Petergof, St. Petersburg 198504, Russia
| | - Gleb S Denisov
- Department of Physics, St. Petersburg State University, 3 Uljanoyskaya str., Petergof, St. Petersburg 198504, Russia
| | - Peter M Tolstoy
- Institute of Chemistry, St. Petersburg State University, 26 Universitetskii pr., Petergof, St. Petersburg 198504, Russia.
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18
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Matthews DA, Cheng L, Harding ME, Lipparini F, Stopkowicz S, Jagau TC, Szalay PG, Gauss J, Stanton JF. Coupled-cluster techniques for computational chemistry: The CFOUR program package. J Chem Phys 2020; 152:214108. [DOI: 10.1063/5.0004837] [Citation(s) in RCA: 214] [Impact Index Per Article: 53.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Affiliation(s)
- Devin A. Matthews
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, USA
| | - Lan Cheng
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, USA
| | - Michael E. Harding
- Institut für Physikalische Chemie, Karlsruher Institut für Technologie (KIT), Kaiserstr. 12, D-76131 Karlsruhe, Germany
| | - Filippo Lipparini
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via G. Moruzzi 13, I-56124 Pisa, Italy
| | - Stella Stopkowicz
- Department Chemie, Johannes Gutenberg-Universität Mainz, Duesbergweg 10-14, D-55128 Mainz, Germany
| | - Thomas-C. Jagau
- Department of Chemistry, University of Munich (LMU), Butenandtstr. 5-13, D-81377 Munich, Germany
| | - Péter G. Szalay
- ELTE Eötvös Loránd University, Institute of Chemistry, Pázmány Péter sétány 1/A, H-1117 Budapest, Hungary
| | - Jürgen Gauss
- Department Chemie, Johannes Gutenberg-Universität Mainz, Duesbergweg 10-14, D-55128 Mainz, Germany
| | - John F. Stanton
- Quantum Theory Project, Departments of Chemistry and Physics, University of Florida, Gainesville, Florida 32611, USA
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19
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Tupikina EY, Denisov GS, Tolstoy PM. Anticooperativity of FH···Cl
−
hydrogen bonds in [FH)
n
Cl]
−
clusters (
n
= 1…6). J Comput Chem 2019; 40:2858-2867. [DOI: 10.1002/jcc.26066] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Revised: 08/19/2019] [Accepted: 08/22/2019] [Indexed: 01/18/2023]
Affiliation(s)
- Elena Yu. Tupikina
- Institute of ChemistrySt. Petersburg State University, Universitetsky pr. 26, 198504 Russia
- Department of PhysicsSt. Petersburg State University Uljanovskaja 1 St. Petersburg 198504 Russia
| | - Gleb S. Denisov
- Department of PhysicsSt. Petersburg State University Uljanovskaja 1 St. Petersburg 198504 Russia
| | - Peter M. Tolstoy
- Institute of ChemistrySt. Petersburg State University, Universitetsky pr. 26, 198504 Russia
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20
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Schwan R, Qu C, Mani D, Pal N, van der Meer L, Redlich B, Leforestier C, Bowman JM, Schwaab G, Havenith M. Observation of the Low‐Frequency Spectrum of the Water Dimer as a Sensitive Test of the Water Dimer Potential and Dipole Moment Surfaces. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201906048] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Raffael Schwan
- Physical Chemistry II Department of Chemistry and Biochemistry Ruhr-Universität Bochum Bochum Germany
| | - Chen Qu
- Cherry L. Emerson Center for Scientific Computations and Department of Chemistry Emory University Atlanta Georgia 30322 USA
| | - Devendra Mani
- Physical Chemistry II Department of Chemistry and Biochemistry Ruhr-Universität Bochum Bochum Germany
| | - Nitish Pal
- Physical Chemistry II Department of Chemistry and Biochemistry Ruhr-Universität Bochum Bochum Germany
| | - Lex van der Meer
- Radboud University Institute for Molecules and Materials, FELIX Laboratory 6525 ED Nijmegen The Netherlands
| | - Britta Redlich
- Radboud University Institute for Molecules and Materials, FELIX Laboratory 6525 ED Nijmegen The Netherlands
| | - Claude Leforestier
- Institut Charles Gerhardt, UMR 5253 CNRS-UM-ENSCM Université de Montpellier Place Eugène Bataillon 34090 Montpellier France
| | - Joel M. Bowman
- Cherry L. Emerson Center for Scientific Computations and Department of Chemistry Emory University Atlanta Georgia 30322 USA
| | - Gerhard Schwaab
- Physical Chemistry II Department of Chemistry and Biochemistry Ruhr-Universität Bochum Bochum Germany
| | - Martina Havenith
- Physical Chemistry II Department of Chemistry and Biochemistry Ruhr-Universität Bochum Bochum Germany
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21
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Schwan R, Qu C, Mani D, Pal N, van der Meer L, Redlich B, Leforestier C, Bowman JM, Schwaab G, Havenith M. Observation of the Low-Frequency Spectrum of the Water Dimer as a Sensitive Test of the Water Dimer Potential and Dipole Moment Surfaces. Angew Chem Int Ed Engl 2019; 58:13119-13126. [PMID: 31350942 PMCID: PMC7687217 DOI: 10.1002/anie.201906048] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2019] [Revised: 07/23/2019] [Indexed: 11/12/2022]
Abstract
Using the helium nanodroplet isolation setup at the ultrabright free-electron laser source FELIX in Nijmegen (BoHeNDI@FELIX), the intermolecular modes of water dimer in the frequency region from 70 to 550 cm-1 were recorded. Observed bands were assigned to donor torsion, acceptor wag, acceptor twist, intermolecular stretch, donor torsion overtone, and in-plane and out-of-plane librational modes. This experimental data set provides a sensitive test for state-of-the-art water potentials and dipole moment surfaces. Theoretical calculations of the IR spectrum are presented using high-level quantum and approximate quasiclassical molecular dynamics approaches. These calculations use the full-dimensional ab initio WHHB potential and dipole moment surfaces. Based on the experimental data, a considerable increase of the acceptor switch and a bifurcation tunneling splitting in the librational mode is deduced, which is a consequence of the effective decrease in the tunneling barrier.
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Affiliation(s)
- Raffael Schwan
- Physical Chemistry II, Department of Chemistry and Biochemistry, Ruhr-Universität Bochum, Bochum, Germany
| | - Chen Qu
- Cherry L. Emerson Center for Scientific Computations and Department of Chemistry, Emory University, Atlanta, Georgia, 30322, USA
| | - Devendra Mani
- Physical Chemistry II, Department of Chemistry and Biochemistry, Ruhr-Universität Bochum, Bochum, Germany
| | - Nitish Pal
- Physical Chemistry II, Department of Chemistry and Biochemistry, Ruhr-Universität Bochum, Bochum, Germany
| | - Lex van der Meer
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, 6525 ED, Nijmegen, The Netherlands
| | - Britta Redlich
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, 6525 ED, Nijmegen, The Netherlands
| | - Claude Leforestier
- Institut Charles Gerhardt, UMR 5253 CNRS-UM-ENSCM, Université de Montpellier, Place Eugène Bataillon, 34090, Montpellier, France
| | - Joel M Bowman
- Cherry L. Emerson Center for Scientific Computations and Department of Chemistry, Emory University, Atlanta, Georgia, 30322, USA
| | - Gerhard Schwaab
- Physical Chemistry II, Department of Chemistry and Biochemistry, Ruhr-Universität Bochum, Bochum, Germany
| | - Martina Havenith
- Physical Chemistry II, Department of Chemistry and Biochemistry, Ruhr-Universität Bochum, Bochum, Germany
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22
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Kjaersgaard A, Lane JR, Kjaergaard HG. Room Temperature Gibbs Energies of Hydrogen-Bonded Alcohol Dimethylselenide Complexes. J Phys Chem A 2019; 123:8427-8434. [DOI: 10.1021/acs.jpca.9b06855] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Alexander Kjaersgaard
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Joseph R. Lane
- School of Science, University of Waikato, Private Bag 3105, Hamilton 3240, New Zealand
| | - Henrik G. Kjaergaard
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
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23
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Harabuchi Y, Tani R, De Silva N, Njegic B, Gordon MS, Taketsugu T. Anharmonic vibrational computations with a quartic force field for curvilinear coordinates. J Chem Phys 2019. [DOI: 10.1063/1.5096167] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Yu Harabuchi
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Ryosuke Tani
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Nuwan De Silva
- Department of Physical and Biological Sciences, Western New England University, Springfield, Massachusetts 01119, USA
| | - Bosiljka Njegic
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, USA
| | - Mark S. Gordon
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, USA
| | - Tetsuya Taketsugu
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Sapporo 001-0021, Japan
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24
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Hansen AS, Vogt E, Kjaergaard HG. Gibbs energy of complex formation – combining infrared spectroscopy and vibrational theory. INT REV PHYS CHEM 2019. [DOI: 10.1080/0144235x.2019.1608689] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Anne S. Hansen
- Department of Chemistry, University of Copenhagen, Copenhagen Ø, Denmark
| | - Emil Vogt
- Department of Chemistry, University of Copenhagen, Copenhagen Ø, Denmark
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25
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Perlt E, Berger SA, Kelterer AM, Kirchner B. Anharmonicity of Vibrational Modes in Hydrogen Chloride-Water Mixtures. J Chem Theory Comput 2019; 15:2535-2547. [PMID: 30811198 DOI: 10.1021/acs.jctc.8b01070] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A thorough analysis of molecular vibrations in the binary system hydrogen chloride/water is presented considering a set of small mixed and pure clusters. In addition to the conventional normal-mode analysis based on the diagonalization of the Hessian, anharmonic frequencies were obtained from the perturbative VPT2 and PT2-VSCF method using hybrid density functional theory. For all normal modes, potential energy curves were modeled by displacing the atoms from the minimum geometry along the normal mode vectors. Three model potentials, a harmonic potential, a Morse potential, and a fourth order polynomial, were applied to fit these curves. From these data, it was possible not only to characterize distinct vibrations as mainly harmonic, anharmonic, or involving higher order terms but also to extract force constants, k, and anharmonicity constants, xe. By investigating all different types of intramolecular vibrations including covalent stretching or bending vibrations and intermolecular vibrations such as librations, we could demonstrate that while vibrational frequencies can be obtained applying scaling factors to harmonic results, useful anharmonicity constants cannot be predicted in such a way and the usage of more elaborate vibrational methods is necessary. For each particular type of molecular vibration, we could however determine a relationship between the wavenumber or wavenumber shift and the anharmonicity constant, which allows us to estimate mode dependent anharmonicity constants for larger clusters in the future.
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Affiliation(s)
- Eva Perlt
- Department of Chemistry , University of California, Irvine , 1102 Natural Sciences II , Irvine , California 92697-2025 , United States
| | - Sarah A Berger
- Institute of Physical and Theoretical Chemistry, NAWI Graz , Graz University of Technology , Stremayrgasse 9 , 8010 Graz , Austria
| | - Anne-Marie Kelterer
- Institute of Physical and Theoretical Chemistry, NAWI Graz , Graz University of Technology , Stremayrgasse 9 , 8010 Graz , Austria
| | - Barbara Kirchner
- Mulliken Center for Theoretical Chemistry , University of Bonn , Beringstrasse 4 , D-53115 Bonn , Germany
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26
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Pitsevich G, Malevich A, Kozlovskaya E, Sablinskas V, Balevicius V. Anharmonicity of the bonded O H group vibrations in water dimer. DFT study including dispersion interaction. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2018.12.033] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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27
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McDonald DC, Wagner JP, McCoy AB, Duncan MA. Near-Infrared Spectroscopy and Anharmonic Theory of Protonated Water Clusters: Higher Elevations in the Hydrogen Bonding Landscape. J Phys Chem Lett 2018; 9:5664-5671. [PMID: 30205006 DOI: 10.1021/acs.jpclett.8b02499] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Near-infrared spectroscopy measurements are presented for protonated water clusters, H+(H2O) n, in the size range of n = 1-8. Clusters are produced in a pulsed-discharge supersonic expansion, mass selected, and studied with infrared laser photodissociation spectroscopy in the regions of 3600-4550 and 4850-7350 cm-1. Although there is some variation with cluster size, the main features of these spectra are a broad absorption near 5300 cm-1, a sharp doublet near 7200 cm-1, as well as a structured absorption near 4100 cm-1 for n ≥ 2. The vibrational patterns measured for the hydronium, Zundel, and Eigen ions are compared to those predicted by different forms of anharmonic theory. Second-order vibrational perturbation theory (VPT2) and a local mode treatment of the OH stretches both capture key aspects of the spectra but suffer understandable deficiencies in the quantitative description of band positions and intensities.
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Affiliation(s)
- D C McDonald
- Department of Chemistry , University of Georgia , Athens , Georgia 30602 , United States
| | - J P Wagner
- Department of Chemistry , University of Georgia , Athens , Georgia 30602 , United States
| | - A B McCoy
- Department of Chemistry , University of Washington , Seattle , Washington 98195 , United States
| | - M A Duncan
- Department of Chemistry , University of Georgia , Athens , Georgia 30602 , United States
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28
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Tupikina E, Denisov G, Melikova S, Kucherov S, Tolstoy P. New look at the Badger-Bauer rule: Correlations of spectroscopic IR and NMR parameters with hydrogen bond energy and geometry. FHF complexes. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.03.018] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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29
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Shin HK. Relaxation of the H 2O Overtone Bending Vibration in the Water Dimer···Hydroxyl Radical Complex. J Phys Chem A 2018; 122:5510-5517. [PMID: 29846069 DOI: 10.1021/acs.jpca.8b03674] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The relaxation mechanism of the overtone bending vibration in the collision of the water dimer with the vibrationally excited hydroxyl radical is studied by use of trajectory procedures. The transfer of the OH(v = 1) energy to the dimer stretches is followed by a near-resonant first overtone transition to the donor monomer. Nearly a quarter of the trajectories undergo a complex-mode collision, forming the (H2O)2···OH complex bound by a hydrogen bond with the lifetime ranging from a subpicosecond scale to >100 ps. The overtone vibration relaxes to the ground state, transferring approximately half of its energy to the dimer hydrogen-bonding (H2O···H2O) and the remaining half to the complex hydrogen-bonding (H2O)2···OH, via near-resonant pathways, each consisting of a series of intermolecular low-frequency vibrations.
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Affiliation(s)
- H K Shin
- Department of Chemistry , University of Nevada , Reno , Nevada 89557 , United States
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30
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Kananenka AA, Skinner JL. Fermi resonance in OH-stretch vibrational spectroscopy of liquid water and the water hexamer. J Chem Phys 2018; 148:244107. [DOI: 10.1063/1.5037113] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Alexei A. Kananenka
- Institute for Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, USA
| | - J. L. Skinner
- Institute for Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, USA
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31
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Abstract
Even though (H2O)2 and (HF)2 are arguably the most thoroughly characterized prototypes for hydrogen bonding, their heterogeneous analogue H2O···HF has received relatively little attention. Here we report that the experimental dissociation energy ( D0) of this important paradigm for heterogeneous hydrogen bonding is too large by 2 kcal mol-1 or 30% relative to our computed value of 6.3 kcal mol-1. For reference, computational procedures similar to those employed here to compute D0 (large basis set CCSD(T) computations with anharmonic corrections from second-order vibrational perturbation theory) provide results within 0.1 kcal mol-1 of the experimental values for (H2O)2 and (HF)2. Near the CCSD(T) complete basis set limit, the electronic dissociation energy for H2O···HF is ∼4 kcal mol-1 larger than those for (H2O)2 and (HF)2 (∼9 kcal mol-1 for the heterogeneous dimer vs ∼5 kcal mol-1 for the homogeneous dimers). Results reported here from symmetry-adapted perturbation theory computations suggest that this large difference is primarily due to the induction contribution to the interaction energy.
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Affiliation(s)
- Thomas More Sexton
- Department of Chemistry and Biochemistry , University of Mississippi , University , Mississippi 38677-1848 , United States
| | - J Coleman Howard
- Department of Chemistry , Virginia Tech , Blacksburg , Virginia 24061 , United States
| | - Gregory S Tschumper
- Department of Chemistry and Biochemistry , University of Mississippi , University , Mississippi 38677-1848 , United States
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32
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33
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Møller KH, Kjaersgaard A, Hansen AS, Du L, Kjaergaard HG. Hybridization of Nitrogen Determines Hydrogen-Bond Acceptor Strength: Gas-Phase Comparison of Redshifts and Equilibrium Constants. J Phys Chem A 2018; 122:3899-3908. [DOI: 10.1021/acs.jpca.8b00541] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Kristian H. Møller
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Alexander Kjaersgaard
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Anne S. Hansen
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Lin Du
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Henrik G. Kjaergaard
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
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34
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Krasnoshchekov SV, Schutski RS, Craig NC, Sibaev M, Crittenden DL. Comparing the accuracy of perturbative and variational calculations for predicting fundamental vibrational frequencies of dihalomethanes. J Chem Phys 2018; 148:084102. [DOI: 10.1063/1.5020295] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Sergey V. Krasnoshchekov
- Department of Chemistry, Lomonosov Moscow State University, Leninskiye Gory 1-3, Moscow 119991, Russian Federation
| | | | - Norman C. Craig
- Department of Chemistry and Biochemistry, Oberlin College, Oberlin, Ohio 44074, USA
| | - Marat Sibaev
- Research School of Chemistry, Australian National University, Canberra, ACT 2601, Australia
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35
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Hansen AS, Kjaergaard HG. Dimethyl Sulfoxide Complexes Detected at Ambient Conditions. J Phys Chem A 2017; 121:6046-6053. [DOI: 10.1021/acs.jpca.7b06102] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Anne S. Hansen
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen, Denmark
| | - Henrik G. Kjaergaard
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen, Denmark
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36
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Athokpam B, Ramesh SG, McKenzie RH. Effect of hydrogen bonding on the infrared absorption intensity of OH stretch vibrations. Chem Phys 2017. [DOI: 10.1016/j.chemphys.2017.03.006] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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37
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Asselin P, Madebène B, Soulard P, Georges R, Goubet M, Huet TR, Pirali O, Zehnacker-Rentien A. Competition between inter- and intra-molecular hydrogen bonding: An infrared spectroscopic study of jet-cooled amino-ethanol and its dimer. J Chem Phys 2016; 145:224313. [DOI: 10.1063/1.4972016] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Pierre Asselin
- Sorbonne Universités, UPMC Univ Paris 06, UMR 8233, MONARIS, F-75005 Paris, France
- CNRS, UMR 8233, MONARIS, F-75005 Paris, France
| | - Bruno Madebène
- Sorbonne Universités, UPMC Univ Paris 06, UMR 8233, MONARIS, F-75005 Paris, France
- CNRS, UMR 8233, MONARIS, F-75005 Paris, France
| | - Pascale Soulard
- Sorbonne Universités, UPMC Univ Paris 06, UMR 8233, MONARIS, F-75005 Paris, France
- CNRS, UMR 8233, MONARIS, F-75005 Paris, France
| | - Robert Georges
- Institut de Physique de Rennes, Campus de Beaulieu, Bat 11C, UMR 6251, Université de Rennes 1-CNRS, 35042 Rennes Cedex, France
| | - Manuel Goubet
- Université Lille, CNRS, UMR 8523—PhLAM–Physique des Lasers, Atomes et Molécules, F-59000 Lille, France
| | - Thérèse R. Huet
- Université Lille, CNRS, UMR 8523—PhLAM–Physique des Lasers, Atomes et Molécules, F-59000 Lille, France
| | - Olivier Pirali
- Institut des Sciences Moléculaires d’Orsay (ISMO), CNRS, University of Paris-Sud, Université Paris-Saclay, F-91405 Orsay, France
- Ligne AILES — Synchrotron SOLEIL, L’Orme des Merisiers, F-91192 Gif-sur-Yvette Cedex, France
| | - Anne Zehnacker-Rentien
- Institut des Sciences Moléculaires d’Orsay (ISMO), CNRS, University of Paris-Sud, Université Paris-Saclay, F-91405 Orsay, France
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38
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Monteiro JG, Barbosa AG. VSCF calculations for the intra- and intermolecular vibrational modes of the water dimer and its isotopologs. Chem Phys 2016. [DOI: 10.1016/j.chemphys.2016.09.027] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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39
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Hoobler PR, Turney JM, Schaefer HF. Investigating the ground-state rotamers of n-propylperoxy radical. J Chem Phys 2016; 145:174301. [DOI: 10.1063/1.4966264] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Preston R. Hoobler
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA, Electronic mail:
| | - Justin M. Turney
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA, Electronic mail:
| | - Henry F. Schaefer
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA, Electronic mail:
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40
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Setiawan D, Kraka E, Cremer D. Quantitative Assessment of Aromaticity and Antiaromaticity Utilizing Vibrational Spectroscopy. J Org Chem 2016; 81:9669-9686. [DOI: 10.1021/acs.joc.6b01761] [Citation(s) in RCA: 49] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Dani Setiawan
- Computational and Theoretical
Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, 3215 Daniel Ave., Dallas, Texas 75275-0314, United States
| | - Elfi Kraka
- Computational and Theoretical
Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, 3215 Daniel Ave., Dallas, Texas 75275-0314, United States
| | - Dieter Cremer
- Computational and Theoretical
Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, 3215 Daniel Ave., Dallas, Texas 75275-0314, United States
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41
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Li S, Kjaergaard HG, Du L. Infrared spectroscopic probing of dimethylamine clusters in an Ar matrix. J Environ Sci (China) 2016; 40:51-9. [PMID: 26969545 DOI: 10.1016/j.jes.2015.09.012] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2015] [Revised: 09/10/2015] [Accepted: 09/14/2015] [Indexed: 05/15/2023]
Abstract
Amines have many atmospheric sources and their clusters play an important role in aerosol nucleation processes. Clusters of a typical amine, dimethylamine (DMA), of different sizes were measured with matrix isolation IR (infrared) and NIR (near infrared) spectroscopy. The NIR vibrations are more separated and therefore it is easier to distinguish different sizes of clusters in this region. The DMA clusters, up to DMA tetramer, have been optimized using density functional methods, and the geometries, binding energies and thermodynamic properties of DMA clusters were obtained. The computed frequencies and intensities of NH-stretching vibrations in the DMA clusters were used to interpret the experimental spectra. We have identified the fundamental transitions of the bonded NH-stretching vibration and the first overtone transitions of the bonded and free NH-stretching vibration in the DMA clusters. Based on the changes in vibrational intensities during the annealing processes, the growth of clusters was clearly observed. The results of annealing processes indicate that DMA molecules tend to form larger clusters with lower energies under matrix temperatures, which is also supported by the calculated reaction energies of cluster formation.
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Affiliation(s)
- Siyang Li
- Environment Research Institute, Shandong University, Shanda South Road 27, Shandong 250100, China.
| | - Henrik G Kjaergaard
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Lin Du
- Environment Research Institute, Shandong University, Shanda South Road 27, Shandong 250100, China; Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark.
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42
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Hansen AS, Maroun Z, Mackeprang K, Frandsen BN, Kjaergaard HG. Accurate thermodynamic properties of gas phase hydrogen bonded complexes. Phys Chem Chem Phys 2016; 18:23831-9. [DOI: 10.1039/c6cp04648g] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
The increase in temperature causes a decrease in equilibrium constant, which makes accurate determination of the enthalpy of complex formation possible.
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Affiliation(s)
- Anne S. Hansen
- Department of Chemistry
- University of Copenhagen
- DK-2100 Copenhagen Ø
- Denmark
| | - Zeina Maroun
- Department of Chemistry
- University of Copenhagen
- DK-2100 Copenhagen Ø
- Denmark
| | - Kasper Mackeprang
- Department of Chemistry
- University of Copenhagen
- DK-2100 Copenhagen Ø
- Denmark
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43
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Anchoring the potential energy surface of an important atmospheric van der Waals dimer, the H2O⋯O2 complex. COMPUT THEOR CHEM 2015. [DOI: 10.1016/j.comptc.2015.08.022] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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44
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Yu Q, Bowman JM. Vibrational second-order perturbation theory (VPT2) using local monomer normal modes. Mol Phys 2015. [DOI: 10.1080/00268976.2015.1085109] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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45
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Tabor DP, Kusaka R, Walsh PS, Zwier TS, Sibert EL. Local Mode Approach to OH Stretch Spectra of Benzene–(H2O)n Clusters, n = 2–7. J Phys Chem A 2015; 119:9917-30. [PMID: 26340135 DOI: 10.1021/acs.jpca.5b06954] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Daniel P. Tabor
- Department
of Chemistry and Theoretical Chemistry Institute, University of Wisconsin—Madison, Madison, Wisconsin 53706, United States
| | - Ryoji Kusaka
- Department
of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Patrick S. Walsh
- Department
of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Timothy S. Zwier
- Department
of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Edwin L. Sibert
- Department
of Chemistry and Theoretical Chemistry Institute, University of Wisconsin—Madison, Madison, Wisconsin 53706, United States
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46
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Schrøder SD, Wallberg JH, Kroll JA, Maroun Z, Vaida V, Kjaergaard HG. Intramolecular Hydrogen Bonding in Methyl Lactate. J Phys Chem A 2015; 119:9692-702. [DOI: 10.1021/acs.jpca.5b04812] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Sidsel D. Schrøder
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Jens H. Wallberg
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Jay A. Kroll
- Department
of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215, United States
- Cooperative Institute for Research in Environmental Sciences, Boulder, Colorado 80309, United States
| | - Zeina Maroun
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Veronica Vaida
- Department
of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215, United States
- Cooperative Institute for Research in Environmental Sciences, Boulder, Colorado 80309, United States
| | - Henrik G. Kjaergaard
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
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47
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Mackeprang K, Hänninen V, Halonen L, Kjaergaard HG. The effect of large amplitude motions on the vibrational intensities in hydrogen bonded complexes. J Chem Phys 2015; 142:094304. [DOI: 10.1063/1.4913737] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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48
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Morita M, Matsuda Y, Endo T, Mikami N, Fujii A, Takahashi K. Hyperconjugation in diethyl ether cation versus diethyl sulfide cation. Phys Chem Chem Phys 2015; 17:23602-12. [DOI: 10.1039/c5cp03765d] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Electron donation from the CH bond to the single occupied orbital is observed through the large red shift in the CH stretching band for the diethyl ether cation.
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Affiliation(s)
- Masato Morita
- Institute of Atomic and Molecular Sciences
- Academia Sinica
- Taipei
- Republic of China
| | - Yoshiyuki Matsuda
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai 980-8578
- Japan
| | - Tomoya Endo
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai 980-8578
- Japan
| | - Naohiko Mikami
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai 980-8578
- Japan
| | - Asuka Fujii
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai 980-8578
- Japan
| | - Kaito Takahashi
- Institute of Atomic and Molecular Sciences
- Academia Sinica
- Taipei
- Republic of China
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49
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Maeda S, Taketsugu T, Morokuma K, Ohno K. Anharmonic Downward Distortion Following for Automated Exploration of Quantum Chemical Potential Energy Surfaces. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2014. [DOI: 10.1246/bcsj.20140189] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Satoshi Maeda
- Department of Chemistry, Faculty of Science, Hokkaido University
| | | | - Keiji Morokuma
- Fukui Institute for Fundamental Chemistry, Kyoto University
- Cherry L. Emerson Center for Scientific Computation and Department of Chemistry, Emory University
| | - Koichi Ohno
- Graduate School of Science, Tohoku University
- Institute for Quantum Chemical Exploration
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50
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Howard JC, Gray JL, Hardwick AJ, Nguyen LT, Tschumper GS. Getting down to the Fundamentals of Hydrogen Bonding: Anharmonic Vibrational Frequencies of (HF)2 and (H2O)2 from Ab Initio Electronic Structure Computations. J Chem Theory Comput 2014; 10:5426-35. [DOI: 10.1021/ct500860v] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- J. Coleman Howard
- Department of Chemistry and
Biochemistry, University of Mississippi, University, Mississippi 38677-1848 United States
| | - Jessica L. Gray
- Department of Chemistry and
Biochemistry, University of Mississippi, University, Mississippi 38677-1848 United States
| | - Amanda J. Hardwick
- Department of Chemistry and
Biochemistry, University of Mississippi, University, Mississippi 38677-1848 United States
| | - Linh T. Nguyen
- Department of Chemistry and
Biochemistry, University of Mississippi, University, Mississippi 38677-1848 United States
| | - Gregory S. Tschumper
- Department of Chemistry and
Biochemistry, University of Mississippi, University, Mississippi 38677-1848 United States
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