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Molecular Structure, Thermodynamic and Spectral Characteristics of Metal-Free and Nickel Complex of Tetrakis(1,2,5-thiadiazolo)porphyrazine. Molecules 2021; 26:molecules26102945. [PMID: 34063423 PMCID: PMC8156015 DOI: 10.3390/molecules26102945] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Revised: 05/06/2021] [Accepted: 05/10/2021] [Indexed: 11/24/2022] Open
Abstract
The Knudsen effusion method with mass spectrometric control of the vapor composition was used to study the possibility of a congruent transition to the gas phase and to estimate the enthalpy of sublimation of metal-free tetrakis(1,2,5-thiadiazolo)porphyrazine and its nickel complex (H2TTDPz and NiTTDPz, respectively). The geometrical and electronic structure of H2TTDPz and NiTTDPz in ground and low-lying excited electronic states were determined by DFT calculations. The electronic structure of NiTTDPz was studied by the complete active space (CASSCF) method, following accounting dynamic correlation by multiconfigurational quasi-degenerate second-order perturbation theory (MCQDPT2). A geometrical structure of D2h and D4h symmetry was obtained for H2TTDPz and NiTTDPz, respectively. According to data obtained by the MCQDPT2 method, the nickel complex possesses the ground state 1A1g, and the wave function of the ground state has the form of a single determinant. Electronic absorption and vibrational (IR and resonance Raman) spectra of H2TTDPz and NiTTDPz were studied experimentally and simulated theoretically.
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Molecular structure of cobalt(II) etioporphyrin-II determined by combined gas-phase electron diffraction/mass-spectrometry and quantum chemical calculations: Searching a ruffling and saddling effects. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128319] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Zhabanov YA, Sliznev VV, Ryzhov IV, Stuzhin PA. Peculiarities of electronic structure and chemical bonding in iron and cobalt metal complexes of porphyrazine and tetra(1,2,5-thiadiazole)porphyrazine. J PORPHYR PHTHALOCYA 2020. [DOI: 10.1142/s1088424620500285] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The geometrical and electronic structures of iron and cobalt metal complexes of porphyrazine and tetra(1,2,5-thiadiazole)porphyrazine in ground and low-lying excited electronic states were determined by DFT calculations and the complete active space (CASSCF) method with following accounting dynamic correlation by multiconfigurational quasidegenerate second-order perturbation theory (MCQDPT2). A geometrical structure of D[Formula: see text] symmetry has been obtained for all four complexes. According to data obtained by the MCQDPT2 method, the complexes of cobalt and iron possess the ground states 2A[Formula: see text] and 3A[Formula: see text], respectively, and wave functions of the ground states have the form of a single determinant. It is shown that the crystal field theory (CFT) can be used to describe the sequence of electronic states of the investigated complexes. The nature of the bonds between metal atoms and nitrogen atoms has been described using the analysis of the electron density distribution in the frame of Bader’s quantum theory of atoms in molecule (QTAIM).
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Affiliation(s)
- Yuriy A. Zhabanov
- Ivanovo State University of Chemistry and Technology, Research Institute of Macroheterocycles, Sheremetevskiy Avenue, 7, Ivanovo 153000, Russia
| | - Valery V. Sliznev
- Ivanovo State University of Chemistry and Technology, Research Institute of Macroheterocycles, Sheremetevskiy Avenue, 7, Ivanovo 153000, Russia
| | - Igor V. Ryzhov
- Ivanovo State University of Chemistry and Technology, Research Institute of Macroheterocycles, Sheremetevskiy Avenue, 7, Ivanovo 153000, Russia
| | - Pavel A. Stuzhin
- Ivanovo State University of Chemistry and Technology, Research Institute of Macroheterocycles, Sheremetevskiy Avenue, 7, Ivanovo 153000, Russia
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Stuzhin PA, Ivanova SS, Hamdoush M, Kirakosyan GA, Kiselev A, Popov A, Sliznev V, Ercolani C. Tetrakis(1,2,5-thiadiazolo)porphyrazines. 9. Synthesis and spectral and theoretical studies of the lithium(i) complex and its unusual behaviour in aprotic solvents in the presence of acids. Dalton Trans 2019; 48:14049-14061. [PMID: 31490491 DOI: 10.1039/c9dt02345c] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The template cyclotetramerization of 1,2,5-thiadiazolo-3,4-dicarbonitrile in the presence of lithium n-butoxide in n-butanol leads to the Li(i) complex of tetrakis(1,2,5-thiadiazolo)porphyrazine. Various possible structures of dilithium and monolithium complexes have been considered by DFT/B3LYP molecular modelling using the cc-pvtz basis set, and their theoretical IR and UV-VIS spectra have been calculated. The experimental 7Li NMR, IR and UV-VIS spectra measurements show that the complex contains two inequivalent lithium atoms - one is coordinated to the macrocyclic dianion to form the anionic lithate complex [TTDPaLi]-, while the other forms the solvated countercation [Li(Solv)4]+. The lithate complex is stable in protic solvents, such as methanol, and is soluble in water to give aggregated solutions. Its demetallation occurs in the presence of acids (CH3COOH, CF3COOH, H2SO4). In aprotic solvents (DMF, DMSO), the acid-catalyzed formation of the [TTDPa]2- dianion is observed which is followed by the formation of the meso-protonated form {H[TTDPa]}- at higher acid concentrations. Both processes can be reversed by the addition of a lithium salt excess or neutralization of the acid. The fluorescence quantum yield for the lithate complex [TTDPaLi]- is much higher than that for the [TTDPa]2- dianion (0.34 and 0.01 in DMSO), and this can be used for detecting low concentrations of acids and Li+ in aprotic solvents (10-6-10-5 M). The first reversible reduction of the macrocycle in the anionic lithate complex (-0.94 V vs. SCE in DMSO) is ∼0.5 V more difficult than that in the complexes with divalent metals [TTDPaM] (M = MgII, ZnII, CuII).
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Affiliation(s)
- Pavel A Stuzhin
- Research Institute of Macroheterocycles, Ivanovo State University of Chemical Technology, 153000 Ivanovo, Sheremetevskij Pr-t 7, Russia.
| | - Svetlana S Ivanova
- Research Institute of Macroheterocycles, Ivanovo State University of Chemical Technology, 153000 Ivanovo, Sheremetevskij Pr-t 7, Russia.
| | - Mahmoud Hamdoush
- Research Institute of Macroheterocycles, Ivanovo State University of Chemical Technology, 153000 Ivanovo, Sheremetevskij Pr-t 7, Russia.
| | - Gayane A Kirakosyan
- Kurnakov Institute of General and Inorganic Chemistry, Russian Academy of Sciences, Leninskii pr. 31, Moscow 119991, Russia
| | - Aleksej Kiselev
- Research Institute of Macroheterocycles, Ivanovo State University of Chemical Technology, 153000 Ivanovo, Sheremetevskij Pr-t 7, Russia.
| | - Anton Popov
- Research Institute of Macroheterocycles, Ivanovo State University of Chemical Technology, 153000 Ivanovo, Sheremetevskij Pr-t 7, Russia.
| | - Valerij Sliznev
- Research Institute of Macroheterocycles, Ivanovo State University of Chemical Technology, 153000 Ivanovo, Sheremetevskij Pr-t 7, Russia.
| | - Claudio Ercolani
- Dipartimento di Chimica, Università di Roma "Sapienza", P.le A. Moro 5, I-00185 Roma, Italy
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Czech C, Kalinowsky L, Schmidt MU. Local structure and stacking disorder of chloro(phthalocyaninato)aluminium. ACTA CRYSTALLOGRAPHICA SECTION B, STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS 2017; 73:744-755. [PMID: 28762984 DOI: 10.1107/s2052520617005017] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2017] [Accepted: 03/31/2017] [Indexed: 06/07/2023]
Abstract
Chloro(phthalocyaninato)aluminium [(C32H16N8)AlCl, Pigment Blue 79] is a molecular compound which crystallizes in a layer structure with stacking disorder. Order-disorder theory was applied to analyse and explain the stacking disorder and to determine the symmetry operations, which generate subsequent layers from a given one. Corresponding ordered structural models were constructed and optimized by force field and dispersion-corrected density functional theory methods. The superposition of the four lowest-energy stackings lead to a structure in which every second double layer looks to be ordered; in the other double layers the molecules occupy one of two lateral positions. This calculated superposition structure agrees excellently with an (incomplete) experimental structure determined from single-crystal data. From the optimized ordered models, the stacking probabilities and the preferred local arrangements were derived. Packing effects such as the distortion of the molecules depending on the arrangement of neighbouring molecules could also be determined.
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Affiliation(s)
- Christian Czech
- Institut für Anorganische und Analytische Chemie der Goethe-Universität, Max-von-Laue-Str. 7, D-60438 Frankfurt am Main, Germany
| | - Lena Kalinowsky
- Institut für Anorganische und Analytische Chemie der Goethe-Universität, Max-von-Laue-Str. 7, D-60438 Frankfurt am Main, Germany
| | - Martin U Schmidt
- Institut für Anorganische und Analytische Chemie der Goethe-Universität, Max-von-Laue-Str. 7, D-60438 Frankfurt am Main, Germany
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Semenov SG, Bedrina ME. A quantum chemical study of gallium(III) (μ-oxo)bis[phthalocyaninate] and gallium(III) (μ-oxo)bis[perfluorophthalocyaninate] molecules. J STRUCT CHEM+ 2017. [DOI: 10.1134/s0022476617030039] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Semenov SG, Bedrina ME, Egorov NV, Titov AV. Quantum-chemical study of lutetium, ytterbium, and gadolinium phthalocyaninates PcLnCl. RUSS J GEN CHEM+ 2016. [DOI: 10.1134/s1070363216050194] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Combined gas-phase electron diffraction/mass spectrometry and DFT study of the molecular structure of zinc(II) etioporphyrin-II. Struct Chem 2015. [DOI: 10.1007/s11224-015-0656-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Zhang J, He Y, Freund WM, Kong W. Electron Diffraction of Superfluid Helium Droplets. J Phys Chem Lett 2014; 5:1801-1805. [PMID: 24920997 PMCID: PMC4048102 DOI: 10.1021/jz5006829] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2014] [Accepted: 05/07/2014] [Indexed: 06/03/2023]
Abstract
We present experimental results of electron diffraction of superfluid helium droplets and droplets doped with phthalocyanine gallium chloride and discuss the possibility of performing the same experiment with a laser aligned sample. The diffraction profile of pure droplets demonstrates dependence on the nozzle temperature, that is, on the average size of the droplets. Larger clusters demonstrate faster decay with increasing momentum transfer, whereas smaller clusters converge to isolated gas phase molecules at source temperatures of 18 K and higher. Electron diffraction of doped droplets shows similar modified molecular scattering intensity as that of the corresponding gas phase molecules. On the basis of fittings of the scattering profile, the number of remaining helium atoms of the doped droplets is estimated to be on the order of hundreds. This result offers guidance in assessing the possibility of electron diffraction from laser aligned molecules doped in superfluid helium droplets.
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Affiliation(s)
| | | | | | - Wei Kong
- E-mail: . Phone: 541-737-6714. Fax: 541-737-2062
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Tverdova NV, Girichev GV, Krasnov AV, Pimenov OA, Koifman OI. The molecular structure, bonding, and energetics of oxovanadium phthalocyanine: an experimental and computational study. Struct Chem 2013. [DOI: 10.1007/s11224-013-0259-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Sheu HL, Laane J. Trans Effect in Halobismuthates and Haloantimonates Revisited. Molecular Structures and Vibrations from Theoretical Calculations. Inorg Chem 2013; 52:4244-9. [DOI: 10.1021/ic302082a] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Hong-Li Sheu
- Department of Chemistry, Texas A&M University, College Station, Texas 77843-3255, United States
| | - Jaan Laane
- Department of Chemistry, Texas A&M University, College Station, Texas 77843-3255, United States
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Tverdova NV, Pimenov OA, Girichev GV, Shlykov SA, Giricheva NI, Mayzlish VE, Koifman OI. Accurate molecular structure of nickel phthalocyanine (NiN8C32H16): Gas-phase electron diffraction and quantum-chemical calculations. J Mol Struct 2012. [DOI: 10.1016/j.molstruc.2012.05.066] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Yang Y. Pyrrolic macrocycles with stabilized triplet states: Metal-centered and ligand-centered separation of unpaired electrons. Polyhedron 2012. [DOI: 10.1016/j.poly.2012.05.022] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Metal–ligand coordination in subphthalocyanines and phthalocyanines: DFT, AIM and ELF analyses. Polyhedron 2012. [DOI: 10.1016/j.poly.2011.11.043] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Semenov SG, Bedrina ME. Structure of aluminum(III (μ-OXO)bis [phthalocyaninate]): A quantum chemical study. J STRUCT CHEM+ 2011. [DOI: 10.1134/s0022476611050258] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Yang Y. Effects induced by axial ligands binding to tetrapyrrole-based aromatic metallomacrocycles. J Phys Chem A 2011; 115:9043-54. [PMID: 21755961 DOI: 10.1021/jp204531e] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The axial positions of planar metallomacrocycles are unoccupied. The positively charged metal is thus a potential binding site for electron-donating groups. The binding strength is affected by the central metal, the ligand, and the macrocycle. One ligand leads to the out-of-plane displacement of the central metal, whereas two ligands from two sides structurally neutralize each other. The axial ligand donates charge to the central metal and the macrocycle when the lone pair orients along the interaction axis. The frontier orbital levels are elevated because of the charge donated to the macrocycle. Even though the singlet-triplet gap and the absorption maximum do not change significantly upon binding, the redox chemistry is considerably affected by the shifts of orbital levels. The macrocyclic M-N bonds are weakened by the binding, but their natures remain almost unchanged. Calcium phthalocyanine is a special case, as the central calcium is too large to fit the cavity. Accordingly, multiple ligands facilely bind to the calcium from one side. The aluminum phthalocyanine halogen is another special case, as it has a halogen ligand coordinating to the aluminum through a nondative bond. This leads to some effects different from those caused by dative binding. When there is no considerable steric demand, the lone pair points along the interaction axis to facilitate the donation. When in a stacked dimer, the electron-rich group is part of a large molecule, and the orientation of the lone pair is approximately perpendicular to the interaction axis. This induces the charge loss of the central metal. Because metallomacrocycles are widespread in the biological, medical, and material sciences, the results from this study are expected to bring useful insights to these fields.
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Affiliation(s)
- Yang Yang
- Department of Chemistry, Case Western Reserve University, Cleveland, Ohio 44106, USA.
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Yang Y. Hexacoordinate Bonding and Aromaticity in Silicon Phthalocyanine. J Phys Chem A 2010; 114:13257-67. [DOI: 10.1021/jp109278v] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Yang Yang
- Department of Chemistry, Case Western Reserve University, Cleveland, Ohio 44106
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