1
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Chen GY, Lin YH, Fu CH, Lin CH, Muthiah B, Espulgar WV, Santos GN, Yu DE, Kasai T. Quantification of peracetic acid (PAA) in the H 2O 2 + acetic acid reaction by the wavelength shift analysis in near-UV/visible absorption region. ANAL SCI 2024; 40:489-499. [PMID: 38165524 DOI: 10.1007/s44211-023-00481-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2023] [Accepted: 11/26/2023] [Indexed: 01/03/2024]
Abstract
In our study, we present an innovative method for the analysis and real-time monitoring of peracetic acid (PAA) formation within the near-UV/Vis (visible) wavelength region. PAA's absorption spectrum, influenced by its presence in a complex quaternary equilibrium mixture with hydrogen peroxide (H2O2), acetic acid, and water, lacks discernible peaks. This inherent complexity challenges conventional analytical techniques like Beer's law, which rely on absorption intensity as a foundation. To address this challenge, we introduce a novel approach that centers on the analysis of blue shifts in absorption wavelengths, particularly at an absorbance of 0.8 a.u. This method significantly enhances the precision of calibration curves for both diluted PAA and H2O2, unveiling an exponential correlation between wavelength and the logarithm of concentration for both components. Significantly, our approach allows for real-time and accurate measurements, especially during the dynamic PAA formation reaction. Our results exhibit excellent agreement with data obtained from Fourier-transform infrared (FT-IR) spectroscopy, validating the reliability of our method. It's noteworthy that under stable PAA concentration conditions (after 12 h of solution interaction), both traditional absorption method and our approach closely align with the FT-IR method. However, in dynamic scenarios (0-12 h), the absorption method exhibits higher error rates compared to our approach. Additionally, the increased concentration of a catalyst, sulfuric acid (H2SO4), significantly reduces the errors in both methods, a finding that warrants further exploration. In summary, our study not only advances our understanding of PAA and its spectral behavior but also introduces innovative and precise methods for determining PAA concentration in complex solutions. These advancements hold the potential to revolutionize the field of chemical analysis and spectroscopy.
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Affiliation(s)
- Guan-Yu Chen
- Department of Chemistry, National Taiwan Normal University, Taipei, 10617, Taiwan
| | - Yueh-Hsin Lin
- Department of Chemistry, National Taiwan Normal University, Taipei, 10617, Taiwan
| | - Cheng-Hsin Fu
- Department of Chemistry, National Taiwan Normal University, Taipei, 10617, Taiwan
| | - Cheng-Huang Lin
- Department of Chemistry, National Taiwan Normal University, Taipei, 10617, Taiwan.
| | - Balaganesh Muthiah
- Department of Chemical Engineering, National Taiwan University, Taipei, 10617, Taiwan
| | - Wilfred V Espulgar
- Department of Physics, De La Salle University, 2401 Taft Avenue, Manila, Philippines.
| | - Gil Nonato Santos
- Department of Physics, De La Salle University, 2401 Taft Avenue, Manila, Philippines
| | - Derrick Ethelbhert Yu
- Department of Chemistry, De La Salle University, 2401 Taft Avenue, Manila, Philippines
| | - Toshio Kasai
- Department of Chemistry, Aerosol Science Research Center, National Sun Yat-Sen University, 70 Lien-Hai Rd, Kaohsiung, 80424, Taiwan.
- Department of Chemistry, Graduate School of Science, Osaka University, Toyonaka, Osaka, 560-0043, Japan.
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2
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Joshi P, Voora VK. Generalized perturbative singles corrections to the random phase approximation method: Impact on noncovalent interaction energies of closed- and open-shell dimers. J Chem Phys 2024; 160:044104. [PMID: 38258929 DOI: 10.1063/5.0180526] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Accepted: 12/29/2023] [Indexed: 01/24/2024] Open
Abstract
The post-Kohn-Sham (KS) random phase approximation (RPA) method may provide a poor description of interaction energies of weakly bonded molecules due to inherent density errors in approximate KS functionals. To overcome these errors, we develop a generalized formalism to incorporate perturbative singles (pS) corrections to the RPA method using orbital rotations as a perturbation parameter. The pS schemes differ in the choice of orbital-rotation gradient and Hessian. We propose a pS scheme termed RPA singles (RPAS)[Hartree-Fock (HF)] that uses the RPA orbital-rotation gradient and time-dependent HF Hessian. This correction reduces the errors in noncovalent interaction energies of closed- and open-shell dimers. For the open-shell dimers, the RPAS(HF) method leads to a consistent error reduction by 50% or more compared to the RPA method for the cases of hydrogen-bonding, metal-solvent, carbene-solvent, and dispersion interactions. We also find that the pS corrections are more important in error reduction compared to higher-order exchange corrections to the RPA method. Overall, for open shells, the RPAS(HF)-corrected RPA method provides chemical accuracy for noncovalent interactions and is more reliable than other perturbative schemes and dispersion-corrected density functional approximations, highlighting its importance as a reliable beyond-RPA correction.
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Affiliation(s)
- Pulkit Joshi
- Department of Chemical Sciences, Tata Institute of Fundamental Research, Homi Bhabha Road, Colaba, Mumbai 400005, India
| | - Vamsee K Voora
- Department of Chemical Sciences, Tata Institute of Fundamental Research, Homi Bhabha Road, Colaba, Mumbai 400005, India
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3
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Hadizadeh MH, Pan Z, Azamat J. A new insight into the interaction of hydroxyl radical with supercooled nanodroplet in the atmosphere. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.119261] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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4
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Hadizadeh MH, Pan Z, Azamat J. Investigation of OH radical in the water nanodroplet during vapor freezing process: An ab initio molecular dynamics study. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.117597] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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5
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Abstract
The existence of a two-center, three-electron hemibond in the first solvation shell of •OH(aq) has long been a matter of debate. The hemibond manifests in ab initio molecular dynamics simulations as a small-r feature in the oxygen radial distribution function (RDF) for H2O···•OH, but that feature disappears when semilocal density functionals are replaced with hybrids, suggesting a self-interaction artifact. Using periodic simulations at the PBE0+D3 level, we demonstrate that the hemibond is actually still present (as evidenced by delocalization of the spin density) but is obscured by the hydrogen-bonded feature in the RDF due to a slight elongation of the hemibond. Computed electronic spectra for •OH(aq) are in excellent agreement with experiment and confirm that hemibond-like configurations play an outsized role in the spectroscopy due to an intense charge-transfer transition that is strongly attenuated in hydrogen-bonded configurations. Apparently, 25% exact exchange (as in PBE0) is insufficient to eliminate delocalization of unpaired spins.
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Affiliation(s)
- Bhaskar Rana
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
| | - John M Herbert
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
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6
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Kjellsson L, Nanda KD, Rubensson JE, Doumy G, Southworth SH, Ho PJ, March AM, Al Haddad A, Kumagai Y, Tu MF, Schaller RD, Debnath T, Bin Mohd Yusof MS, Arnold C, Schlotter WF, Moeller S, Coslovich G, Koralek JD, Minitti MP, Vidal ML, Simon M, Santra R, Loh ZH, Coriani S, Krylov AI, Young L. Resonant Inelastic X-Ray Scattering Reveals Hidden Local Transitions of the Aqueous OH Radical. PHYSICAL REVIEW LETTERS 2020; 124:236001. [PMID: 32603165 DOI: 10.1103/physrevlett.124.236001] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2020] [Revised: 05/01/2020] [Accepted: 05/22/2020] [Indexed: 05/06/2023]
Abstract
Resonant inelastic x-ray scattering (RIXS) provides remarkable opportunities to interrogate ultrafast dynamics in liquids. Here we use RIXS to study the fundamentally and practically important hydroxyl radical in liquid water, OH(aq). Impulsive ionization of pure liquid water produced a short-lived population of OH(aq), which was probed using femtosecond x-rays from an x-ray free-electron laser. We find that RIXS reveals localized electronic transitions that are masked in the ultraviolet absorption spectrum by strong charge-transfer transitions-thus providing a means to investigate the evolving electronic structure and reactivity of the hydroxyl radical in aqueous and heterogeneous environments. First-principles calculations provide interpretation of the main spectral features.
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Affiliation(s)
- L Kjellsson
- Department of Physics and Astronomy, Uppsala University, Box 516, S-751 20 Uppsala, Sweden
| | - K D Nanda
- Department of Chemistry, University of Southern California, Los Angeles, California 90007, USA
| | - J-E Rubensson
- Department of Physics and Astronomy, Uppsala University, Box 516, S-751 20 Uppsala, Sweden
| | - G Doumy
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - S H Southworth
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - P J Ho
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - A M March
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - A Al Haddad
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - Y Kumagai
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - M-F Tu
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - R D Schaller
- Center for Nanoscale Materials, Argonne National Laboratory, Lemont, Illinois 60439, USA
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, USA
| | - T Debnath
- Division of Chemistry and Biological Chemistry, Nanyang Technological University, Singapore 639798
| | - M S Bin Mohd Yusof
- Division of Chemistry and Biological Chemistry, Nanyang Technological University, Singapore 639798
| | - C Arnold
- Center for Free-Electron Laser Science, DESY, 22607 Hamburg, Germany
- Department of Physics, Universität Hamburg, 20146 Hamburg, Germany
- Hamburg Centre for Ultrafast Imaging, 22607 Hamburg, Germany
| | - W F Schlotter
- LCLS, SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - S Moeller
- LCLS, SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - G Coslovich
- LCLS, SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - J D Koralek
- LCLS, SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - M P Minitti
- LCLS, SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - M L Vidal
- DTU Chemistry-Department of Chemistry, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
| | - M Simon
- Sorbonne Université and CNRS, Laboratoire de Chimie Physique-Matière et Rayonnement, 75252 Paris Cedex 05, France
| | - R Santra
- Center for Free-Electron Laser Science, DESY, 22607 Hamburg, Germany
- Department of Physics, Universität Hamburg, 20146 Hamburg, Germany
- Hamburg Centre for Ultrafast Imaging, 22607 Hamburg, Germany
| | - Z-H Loh
- Division of Chemistry and Biological Chemistry, Nanyang Technological University, Singapore 639798
| | - S Coriani
- DTU Chemistry-Department of Chemistry, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
| | - A I Krylov
- Department of Chemistry, University of Southern California, Los Angeles, California 90007, USA
| | - L Young
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
- Department of Physics and James Franck Institute, The University of Chicago, Chicago, Illinois 60637, USA
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7
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Christensen EG, Steele RP. Stepwise Activation of Water by Open-Shell Interactions, Cl(H 2O) n=4–8,17. J Phys Chem A 2020; 124:3417-3437. [DOI: 10.1021/acs.jpca.0c01544] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Elizabeth G. Christensen
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
| | - Ryan P. Steele
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
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8
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Niu Z, Tang M, Ge N. Structure, stability, infrared spectra, and bonding of OH m(H 2O) 7 ( m = 0, ±1) clusters: ab initio study combining the particle swarm optimization algorithm. Phys Chem Chem Phys 2020; 22:26487-26501. [PMID: 33185201 DOI: 10.1039/d0cp04332j] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
The various structural candidates of anionic, neutral, and cationic water clusters OHm(H2O)7 (m = 0, ±1) have been globally predicted by combining the particle swarm optimization method and quantum chemical calculations. Geometry optimization and vibrational analysis for the optimal structures were performed with the MP2/aug-cc-pVDZ method, and the energy profile was further refined at the CCSD(T)/CBS level. Special attention was paid to the relationships between configurations and energies, particularly the first solvation shell coordination number of OH- and OH. For OH-(H2O)7, OH(H2O)7, and OH+(H2O)7 clusters, the most stable species at room temperature are predicted to be the tetra-solvated multi-ring structure A6, the tri-solvated hemibond cage structure N1, and the single five-membered ring structure C2, respectively. The temperature effects on the stability of these three systems were also explored via Gibbs free energies. Furthermore, for the OH-(H2O)7 clusters, the assignments of vibrational transitions in the OH stretching region are in good agreement with the studies of small hydroxide ion-water clusters, and the IR spectra of two isomers (tetra-solvated multi-ring A6 and penta-solvated cage A3) may match future experimental observation well. By topological analysis and reduced density gradient analysis, the structural characteristics and bonding strengths of the studied clusters were investigated. This work indicates the excellent performance of the PSO search algorithm and CALYPSO on water clusters, and may further provide extensive insights into the chemical behavior such as the transport mechanism of OH- ions and OH radicals in the aqueous phase.
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Affiliation(s)
- Zhenwei Niu
- School of National Defense Science & Technology, Southwest University of Science and Technology, Mianyang 621010, P. R. China
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9
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Rana B, Herbert JM. Role of hemibonding in the structure and ultraviolet spectroscopy of the aqueous hydroxyl radical. Phys Chem Chem Phys 2020; 22:27829-27844. [DOI: 10.1039/d0cp05216g] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The presence of a two-center, three-electron hemibond in the solvation structure of the aqueous hydroxl radical has long been debated, as its appearance can be sensitive to self-interaction error in density functional theory.
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Affiliation(s)
- Bhaskar Rana
- Department of Chemistry & Biochemistry
- The Ohio State University
- Columbus
- USA
| | - John M. Herbert
- Department of Chemistry & Biochemistry
- The Ohio State University
- Columbus
- USA
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10
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Apostolidou C. OH radical in water from ab initio molecular dynamics simulation employing hybrid functionals. J Chem Phys 2019. [DOI: 10.1063/1.5107479] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Affiliation(s)
- Christina Apostolidou
- Mulliken Center for Theoretical Chemistry, Institute of Physical and Theoretical Chemistry, Rheinische Friedrich-Wilhelms-Universität Bonn, Beringstraße 4, 53115 Bonn, Germany
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11
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Zhu Y, Ping L, Bai M, Liu Y, Song H, Li J, Yang M. Tracking the energy flow in the hydrogen exchange reaction OH + H 2O → H 2O + OH. Phys Chem Chem Phys 2018; 20:12543-12556. [PMID: 29693667 DOI: 10.1039/c8cp00938d] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The prototypical hydrogen exchange reaction OH + H2O → H2O + OH has attracted considerable interest due to its importance in a wide range of chemically active environments. In this work, an accurate global potential energy surface (PES) for the ground electronic state was developed based on ∼44 000 ab initio points at the level of UCCSD(T)-F12a/aug-cc-pVTZ. The PES was fitted using the fundamental invariant-neural network method with a root mean squared error of 4.37 meV. The mode specific dynamics was then studied by the quasi-classical trajectory method on the PES. Furthermore, the normal mode analysis approach was employed to calculate the final vibrational state distribution of the product H2O, in which a new scheme to acquire the Cartesian coordinates and momenta of each atom in the product molecule from the trajectories was proposed. It was found that, on one hand, excitation of either the symmetric stretching mode or the asymmetric stretching mode of the reactant H2O promotes the reaction more than the translational energy, which can be rationalized by the sudden vector projection model. On the other hand, the relatively higher efficacy of exciting the symmetric stretching mode than that of the asymmetric stretching mode is caused by the prevalence of the indirect mechanism at low collision energies and the stripping mechanism at high collision energies. In addition, the initial collision energy turns ineffectively into the vibrational energy of the products H2O and OH while a fraction of the energy transforms into the rotational energy of the product H2O. Fundamental excitation of the stretching modes of H2O results in the product H2O having the highest population in the fundamental state of the asymmetric stretching mode, followed by the ground state and the fundamental state of the symmetric stretching mode.
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Affiliation(s)
- Yongfa Zhu
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, China.
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12
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Bai M, Lu D, Li J. Quasi-classical trajectory studies on the full-dimensional accurate potential energy surface for the OH + H2O = H2O + OH reaction. Phys Chem Chem Phys 2017; 19:17718-17725. [DOI: 10.1039/c7cp02656k] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The first accurate PES for the OH + H2O reaction is developed by using the permutation invariant polynomial-neural network method to fit ∼48 000 CCSD(T)-F12a/AVTZ calculated points.
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Affiliation(s)
- Mengna Bai
- School of Chemistry and Chemical Engineering
- Chongqing University
- Chongqing 401331
- China
| | - Dandan Lu
- School of Chemistry and Chemical Engineering
- Chongqing University
- Chongqing 401331
- China
| | - Jun Li
- School of Chemistry and Chemical Engineering
- Chongqing University
- Chongqing 401331
- China
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13
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Pan PR, Lu EP, Kuo JL, Tsai MK. The Spectroscopic Features of Ionized Water Medium: Theoretical Characterization and Implication Using (H 2O) n+, n=3-4, Cluster Model. J CHIN CHEM SOC-TAIP 2016. [DOI: 10.1002/jccs.201600030] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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14
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Picosecond metrology of laser-driven proton bursts. Nat Commun 2016; 7:10642. [PMID: 26861592 PMCID: PMC4749984 DOI: 10.1038/ncomms10642] [Citation(s) in RCA: 65] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2015] [Accepted: 01/07/2016] [Indexed: 12/30/2022] Open
Abstract
Tracking primary radiation-induced processes in matter requires ultrafast sources and high precision timing. While compact laser-driven ion accelerators are seeding the development of novel high instantaneous flux applications, combining the ultrashort ion and laser pulse durations with their inherent synchronicity to trace the real-time evolution of initial damage events has yet to be realized. Here we report on the absolute measurement of proton bursts as short as 3.5±0.7 ps from laser solid target interactions for this purpose. Our results verify that laser-driven ion acceleration can deliver interaction times over a factor of hundred shorter than those of state-of-the-art accelerators optimized for high instantaneous flux. Furthermore, these observations draw ion interaction physics into the field of ultrafast science, opening the opportunity for quantitative comparison with both numerical modelling and the adjacent fields of ultrafast electron and photon interactions in matter. Experimental investigations of the response of matter to ionization would require extremely fast ion pump pulses. Here, the authors explore a different approach observing ionisation dynamics in SiO2 glass by generating synchronized proton pulses from the interaction of high-power lasers on a solid target.
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15
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Piecuch P, Hansen JA, Ajala AO. Benchmarking the completely renormalised equation-of-motion coupled-cluster approaches for vertical excitation energies. Mol Phys 2015. [DOI: 10.1080/00268976.2015.1076901] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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16
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Codorniu-Hernández E, Hall KW, Boese AD, Ziemianowicz D, Carpendale S, Kusalik PG. Mechanism of O(3P) Formation from a Hydroxyl Radical Pair in Aqueous Solution. J Chem Theory Comput 2015; 11:4740-8. [DOI: 10.1021/acs.jctc.5b00783] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
| | | | - A. Daniel Boese
- Department
of Chemistry, Physical and Theoretical Chemistry, University of Graz, Heinrichstraße 28/IV, 8010 Graz, Austria
- Department
of Chemistry, University of Potsdam, Karl-Liebknecht-Straße 24-25, 14476 Potsdam, Germany
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17
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18
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Lin LC, Liang JM, Lu EP, Tsai MK. Response of the hydrogen bond network to the ionization of bulk water: ab initio molecular dynamic simulations using H2S(aq). Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2015.04.034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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19
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Herr JD, Talbot J, Steele RP. Structural Progression in Clusters of Ionized Water, (H2O)n=1–5+. J Phys Chem A 2015; 119:752-66. [DOI: 10.1021/jp509698y] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Affiliation(s)
- Jonathan D. Herr
- Henry Eyring
Center for Theoretical
Chemistry, Thatcher Building for Biological and Biophysical Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
| | - Justin Talbot
- Henry Eyring
Center for Theoretical
Chemistry, Thatcher Building for Biological and Biophysical Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
| | - Ryan P. Steele
- Henry Eyring
Center for Theoretical
Chemistry, Thatcher Building for Biological and Biophysical Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
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20
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Influence of high voltage atmospheric cold plasma process parameters and role of relative humidity on inactivation of Bacillus atrophaeus spores inside a sealed package. J Hosp Infect 2014; 88:162-9. [DOI: 10.1016/j.jhin.2014.08.009] [Citation(s) in RCA: 119] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2014] [Accepted: 08/07/2014] [Indexed: 11/20/2022]
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21
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Hoffman GJ, Gurunathan PK, Francisco JS, Slipchenko LV. Excited states of OH-(H2O)n clusters for n = 1–4: An ab initio study. J Chem Phys 2014; 141:104315. [PMID: 25217924 DOI: 10.1063/1.4894772] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Gerald J. Hoffman
- Department of Chemistry, Edinboro University of Pennsylvania, 230 Scotland Road, Edinboro, Pennsylvania 16444, USA
| | | | - Joseph S. Francisco
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, USA
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22
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Codorniu-Hernández E, Hall KW, Ziemianowicz D, Carpendale S, Kusalik PG. Aqueous production of oxygen atoms from hydroxyl radicals. Phys Chem Chem Phys 2014; 16:26094-102. [DOI: 10.1039/c4cp02959c] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Car–Parrinello MD simulations and advanced visualization techniques of OH*-pair encounters in water demonstrate the formation of the triplet oxygen atom.
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Affiliation(s)
| | - Kyle Wm. Hall
- Department of Chemistry
- University of Calgary
- Calgary, Canada
- Department of Computer Science
- University of Calgary
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23
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Codorniu-Hernández E, Boese AD, Kusalik PG. The hemibond as an alternative condensed phase structure for the hydroxyl radical. CAN J CHEM 2013. [DOI: 10.1139/cjc-2012-0520] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Despite the critical importance of the hydroxyl radical in major scientific fields, there are still open questions on the behavior of this species in the aqueous phase. In particular, there has been much debate on the existence of a hemibonded interaction between the hydroxyl radical and water molecules. While some reports indicate that the hemibonded radical might explain some experimental data, others have claimed that this interaction is simply a density functional theory (DFT) artifact. Here, we provide results from high level (basis set limit of coupled-cluster levels up to single, double, triple excitations (CCSD(T)) and beyond) ab initio calculations of different OH•(H2O)n clusters in the gas phase to accurately explore the existence of the hemibonded interaction and its energy difference with respect to other well-defined hydrogen bond interactions. Additional comparisons with second order perturbation theory (MP2) and DFT are also presented. Constrained molecular dynamics was applied to determine the free energy for the formation/disruption and ice systems. Overall, our findings confirm that the hemibond can be an alternative structure for the hydroxyl radical in the condensed phase when the formation of hydrogen bonds is impeded. These results will aid the understanding of theoretical and experimental data and help future experimental designs for the detection of this important species.
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Affiliation(s)
| | - A. Daniel Boese
- Department of Chemistry, Institut für Chemie, Universität Potsdam, Karl-Liebknecht-Straße 24-25, D-14476 Potsdam, Germany
| | - Peter G. Kusalik
- Department of Chemistry, University of Calgary, 2500 University Drive NW, Calgary, AB T2N 1N4, Canada
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24
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Affiliation(s)
- Hainam Do
- School of Chemistry, University of Nottingham, University Park, Nottingham,
NG7 2RD, U.K
| | - Nicholas A. Besley
- School of Chemistry, University of Nottingham, University Park, Nottingham,
NG7 2RD, U.K
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Goto T, Morisawa Y, Higashi N, Ikehata A, Ozaki Y. Pulse Laser Photolysis of Aqueous Ozone in the Microsecond Range Studied by Time-Resolved Far-Ultraviolet Absorption Spectroscopy. Anal Chem 2013; 85:4500-6. [DOI: 10.1021/ac400056m] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Takeyoshi Goto
- National Food
Research Institute, National Agriculture and Food Research Organization (NARO), Tsukuba, Ibaraki 305-8642, Japan
| | - Yusuke Morisawa
- Department of Chemistry, School
of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
- Department of Chemistry, School
of Science and Engineering, Kinki University, Higashiosaka, Osaka 577-8502, Japan
| | - Noboru Higashi
- Kurabo Industries Ltd., Shimokida-cho, Neyagawa, Osaka 572-0823, Japan
| | - Akifumi Ikehata
- National Food
Research Institute, National Agriculture and Food Research Organization (NARO), Tsukuba, Ibaraki 305-8642, Japan
| | - Yukihiro Ozaki
- Department of Chemistry, School
of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
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Marsalek O, Elles CG, Pieniazek PA, Pluhařová E, VandeVondele J, Bradforth SE, Jungwirth P. Chasing charge localization and chemical reactivity following photoionization in liquid water. J Chem Phys 2012; 135:224510. [PMID: 22168706 DOI: 10.1063/1.3664746] [Citation(s) in RCA: 73] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023] Open
Abstract
The ultrafast dynamics of the cationic hole formed in bulk liquid water following ionization is investigated by ab initio molecular dynamics simulations and an experimentally accessible signature is suggested that might be tracked by femtosecond pump-probe spectroscopy. This is one of the fastest fundamental processes occurring in radiation-induced chemistry in aqueous systems and biological tissue. However, unlike the excess electron formed in the same process, the nature and time evolution of the cationic hole has been hitherto little studied. Simulations show that an initially partially delocalized cationic hole localizes within ~30 fs after which proton transfer to a neighboring water molecule proceeds practically immediately, leading to the formation of the OH radical and the hydronium cation in a reaction which can be formally written as H(2)O(+) + H(2)O → OH + H(3)O(+). The exact amount of initial spin delocalization is, however, somewhat method dependent, being realistically described by approximate density functional theory methods corrected for the self-interaction error. Localization, and then the evolving separation of spin and charge, changes the electronic structure of the radical center. This is manifested in the spectrum of electronic excitations which is calculated for the ensemble of ab initio molecular dynamics trajectories using a quantum mechanics/molecular mechanics (QM∕MM) formalism applying the equation of motion coupled-clusters method to the radical core. A clear spectroscopic signature is predicted by the theoretical model: as the hole transforms into a hydroxyl radical, a transient electronic absorption in the visible shifts to the blue, growing toward the near ultraviolet. Experimental evidence for this primary radiation-induced process is sought using femtosecond photoionization of liquid water excited with two photons at 11 eV. Transient absorption measurements carried out with ~40 fs time resolution and broadband spectral probing across the near-UV and visible are presented and direct comparisons with the theoretical simulations are made. Within the sensitivity and time resolution of the current measurement, a matching spectral signature is not detected. This result is used to place an upper limit on the absorption strength and/or lifetime of the localized H(2)O(+) ((aq)) species.
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Affiliation(s)
- Ondrej Marsalek
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic and Center for Biomolecules and Complex Molecular Systems, Flemingovo nám. 2, 16610 Prague 6, Czech Republic
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Yamaguchi M. Hemibonding of Hydroxyl Radical and Halide Anion in Aqueous Solution. J Phys Chem A 2011; 115:14620-8. [DOI: 10.1021/jp2063386] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Makoto Yamaguchi
- Japan Atomic Energy Agency, 4-33 Muramatsu, Tokai-mura, Naka-gun, Ibaraki 319-1194, Japan
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Codorniu-Hernández E, Kusalik PG. Insights into the Solvation and Mobility of the Hydroxyl Radical in Aqueous Solution. J Chem Theory Comput 2011; 7:3725-32. [DOI: 10.1021/ct200418e] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Edelsys Codorniu-Hernández
- Department of Chemistry, University of Calgary, 2500 University Drive NW, Calgary, T2N1N4, Alberta, Canada
| | - Peter G. Kusalik
- Department of Chemistry, University of Calgary, 2500 University Drive NW, Calgary, T2N1N4, Alberta, Canada
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Herrmann H, Hoffmann D, Schaefer T, Bräuer P, Tilgner A. Tropospheric aqueous-phase free-radical chemistry: radical sources, spectra, reaction kinetics and prediction tools. Chemphyschem 2011; 11:3796-822. [PMID: 21120981 DOI: 10.1002/cphc.201000533] [Citation(s) in RCA: 111] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
The most important radicals which need to be considered for the description of chemical conversion processes in tropospheric aqueous systems are the hydroxyl radical (OH), the nitrate radical (NO(3)) and sulphur-containing radicals such as the sulphate radical (SO(4)(-)). For each of the three radicals their generation and their properties are discussed first in the corresponding sections. The main focus herein is to summarize newly published aqueous-phase kinetic data on OH, NO(3) and SO(4)(-) radical reactions relevant for the description of multiphase tropospheric chemistry. The data compilation builds up on earlier datasets published in the literature. Since the last review in 2003 (H. Herrmann, Chem. Rev. 2003, 103, 4691-4716) more than hundred new rate constants are available from literature. In case of larger discrepancies between novel and already published rate constants the available kinetic data for these reactions are discussed and recommendations are provided when possible. As many OH kinetic data are obtained by means of the thiocyanate (SCN(-)) system in competition kinetic measurements of OH radical reactions this system is reviewed in a subchapter of this review. Available rate constants for the reaction sequence following the reaction of OH+SCN(-) are summarized. Newly published data since 2003 have been considered and averaged rate constants are calculated. Applying competition kinetics measurements usually the formation of the radical anion (SCN)(2)(-) is monitored directly by absorption measurements. Within this subchapter available absorption spectra of the (SCN)(2)(-) radical anion from the last five decades are presented. Based on these spectra an averaged (SCN)(2)(-) spectrum was calculated. In the last years different estimation methods for aqueous phase kinetic data of radical reactions have been developed and published. Such methods are often essential to estimate kinetic data which are not accessible from the literature. Approaches for rate constant prediction include empirical correlations as well as structure activity relationships (SAR) either with or without the usage of quantum chemical descriptors. Recently published estimation methods for OH, NO(3) and SO(4)(-) radical reactions in aqueous solution are finally summarized, compared and discussed.
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Affiliation(s)
- Hartmut Herrmann
- Chemistry Department, Leibniz-Institute for Tropospheric Research, Permoserstr. 15, 04318 Leipzig, Germany.
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Affiliation(s)
- Daniel M. Chipman
- Radiation Laboratory, University of Notre Dame, Notre Dame, Indiana 46556-5674, United States
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