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For: Roe DR, Chaka AM. Structural basis of pathway-dependent force profiles in stretched DNA. J Phys Chem B 2010;113:15364-71. [PMID: 19845321 DOI: 10.1021/jp906749j] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Number Cited by Other Article(s)
1
Berryman JT, Taghavi A, Mazur F, Tkatchenko A. Quantum machine learning corrects classical forcefields: Stretching DNA base pairs in explicit solvent. J Chem Phys 2022;157:064107. [PMID: 35963717 DOI: 10.1063/5.0094727] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
2
Shepherd JW, Greenall RJ, Probert M, Noy A, Leake M. The emergence of sequence-dependent structural motifs in stretched, torsionally constrained DNA. Nucleic Acids Res 2020;48:1748-1763. [PMID: 31930331 PMCID: PMC7038985 DOI: 10.1093/nar/gkz1227] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2019] [Revised: 12/16/2019] [Accepted: 12/20/2019] [Indexed: 11/26/2022]  Open
3
DNA partitions into triplets under tension in the presence of organic cations, with sequence evolutionary age predicting the stability of the triplet phase. Q Rev Biophys 2018;50:e15. [PMID: 29233227 DOI: 10.1017/s0033583517000130] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
4
Wang K. DNA-Based Single-Molecule Electronics: From Concept to Function. J Funct Biomater 2018;9:jfb9010008. [PMID: 29342091 PMCID: PMC5872094 DOI: 10.3390/jfb9010008] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Revised: 01/11/2018] [Accepted: 01/15/2018] [Indexed: 12/15/2022]  Open
5
Garai A, Mogurampelly S, Bag S, Maiti PK. Overstretching of B-DNA with various pulling protocols: Appearance of structural polymorphism and S-DNA. J Chem Phys 2017;147:225102. [DOI: 10.1063/1.4991862] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
6
Bruot C, Xiang L, Palma JL, Tao N. Effect of mechanical stretching on DNA conductance. ACS NANO 2015;9:88-94. [PMID: 25530305 DOI: 10.1021/nn506280t] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
7
Bongini L, Lombardi V, Bianco P. The transition mechanism of DNA overstretching: a microscopic view using molecular dynamics. J R Soc Interface 2015;11:20140399. [PMID: 24920111 DOI: 10.1098/rsif.2014.0399] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
8
Naserian-Nik AM, Tahani M, Karttunen M. Molecular dynamics study of DNA oligomers under angled pulling. RSC Adv 2014. [DOI: 10.1039/c3ra45604h] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]  Open
9
Naserian-Nik AM, Tahani M, Karttunen M. Pulling of double-stranded DNA by atomic force microscopy: a simulation in atomistic details. RSC Adv 2013. [DOI: 10.1039/c3ra23213a] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]  Open
10
Wolter M, Elstner M, Kubař T. On the Structure and Stretching of Microhydrated DNA. J Phys Chem A 2011;115:11238-47. [DOI: 10.1021/jp204307t] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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