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Ashizawa R, Noguchi T. Effects of hydrogen bonding interactions on the redox potential and molecular vibrations of plastoquinone as studied using density functional theory calculations. Phys Chem Chem Phys 2014; 16:11864-76. [DOI: 10.1039/c3cp54742f] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Vessecchi R, Emery FS, Lopes NP, Galembeck SE. Electronic structure and gas-phase chemistry of protonated α- and β-quinonoid compounds: a mass spectrometry and computational study. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2013; 27:816-824. [PMID: 23495028 DOI: 10.1002/rcm.6519] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2012] [Revised: 01/18/2013] [Accepted: 01/18/2013] [Indexed: 06/01/2023]
Abstract
RATIONALE The use of quinonoid compounds against tropical diseases and as antitumor agents has prompted the search for new naturally occurring and synthetic derivatives. Among these quinonoid compounds, lapachol and its isomers (α- and β-lapachone) serve as models for the synthesis of new compounds with biological activity, and the use of electrospray ionization tandem mass spectrometry (ESI-MS/MS) analysis as a tool to elucidate and characterize these products has furnished important information about these compounds. METHODS ESI-MS/MS analysis under collision-induced dissociation conditions was used to describe the fragmentation mechanisms for protonated 1,4-naphthoquinone, 1,2-naphthoquinone, α-lapachone, and β-lapachone. The B3LYP/6-31+G(d,p) model was used to obtain proton affinities, gas-phase basicities, and molecular electrostatic potential maps, thus indicating the probable protonation sites. Fragmentation pathways were suggested on the basis of the relative enthalpies of the product ions. RESULTS The ESI-MS signals of the cationized molecules of ortho quinonoid compounds were more intense than those of the protonated molecule. Formation of the major product ions with m/z 187 from protonated α- and β-lapachone has been attributed to a retro-Diels-Alder (RDA) reaction. CONCLUSIONS MS/MS studies on lapachol isomers (α- and β-lapachone) will facilitate the interpretation of the liquid chromatography (LC)-MS/MS analysis of new metabolites. MS/MS data on the 1,4-naphthoquinone, 1,2-naphthoquinone, α-lapachone and β-lapachone core will help characterize new derivatives from in vitro/in vivo metabolism studies in complex matrices. The product ions revealed the major fragmentation mechanisms and these ions will serve as diagnostic ions to identify each studied compound.
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Affiliation(s)
- Ricardo Vessecchi
- Núcleo de Pesquisa em Produtos Naturais e Sintéticos, Departamento de Física e Química, Faculdade de Ciências Farmacêuticas de Ribeirão Preto, Universidade de São Paulo, Brasil.
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Vessecchi R, Emery FS, Galembeck SE, Lopes NP. Gas-phase reactivity of 2-hydroxy-1,4-naphthoquinones: a computational and mass spectrometry study of lapachol congeners. JOURNAL OF MASS SPECTROMETRY : JMS 2012; 47:1648-1659. [PMID: 23280754 DOI: 10.1002/jms.3101] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2012] [Revised: 09/03/2012] [Accepted: 09/04/2012] [Indexed: 06/01/2023]
Abstract
In order to understand the influence of alkyl side chains on the gas-phase reactivity of 1,4-naphthoquinone derivatives, some 2-hydroxy-1,4-naphthoquinone derivatives have been prepared and studied by electrospray ionization tandem mass spectrometry in combination with computational quantum chemistry calculations. Protonation and deprotonation sites were suggested on the basis of gas-phase basicity, proton affinity, gas-phase acidity (ΔG(acid) ), atomic charges and frontier orbital analyses. The nature of the intramolecular interaction as well as of the hydrogen bond in the systems was investigated by the atoms-in-molecules theory and the natural bond orbital analysis. The results were compared with data published for lapachol (2-hydroxy-3-(3-methyl-2-butenyl)-1,4-naphthoquinone). For the protonated molecules, water elimination was verified to occur at lower proportion when compared with side chain elimination, as evidenced in earlier studies on lapachol. The side chain at position C(3) was found to play important roles in the fragmentation mechanisms of these compounds.
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Affiliation(s)
- Ricardo Vessecchi
- Núcleo de Pesquisa em Produtos Naturais e Sintéticos, Departamento de Física e Química, Faculdade de Ciências Farmacêuticas de Ribeirão Preto, Universidade de São Paulo, Brasil
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Bedini A, De Laurentiis E, Sur B, Maurino V, Minero C, Brigante M, Mailhot G, Vione D. Phototransformation of anthraquinone-2-sulphonate in aqueous solution. Photochem Photobiol Sci 2012; 11:1445-53. [DOI: 10.1039/c2pp25111f] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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Vessecchi R, Naal Z, Lopes JNC, Galembeck SE, Lopes NP. Generation of naphthoquinone radical anions by electrospray ionization: solution, gas-phase, and computational chemistry studies. J Phys Chem A 2011; 115:5453-60. [PMID: 21561138 DOI: 10.1021/jp202322n] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Radical anions are present in several chemical processes, and understanding the reactivity of these species may be described by their thermodynamic properties. Over the last years, the formation of radical ions in the gas phase has been an important issue concerning electrospray ionization mass spectrometry studies. In this work, we report on the generation of radical anions of quinonoid compounds (Q) by electrospray ionization mass spectrometry. The balance between radical anion formation and the deprotonated molecule is also analyzed by influence of the experimental parameters (gas-phase acidity, electron affinity, and reduction potential) and solvent system employed. The gas-phase parameters for formation of radical species and deprotonated species were achieved on the basis of computational thermochemistry. The solution effects on the formation of radical anion (Q(•-)) and dianion (Q(2-)) were evaluated on the basis of cyclic voltammetry analysis and the reduction potentials compared with calculated electron affinities. The occurrence of unexpected ions [Q+15](-) was described as being a reaction between the solvent system and the radical anion, Q(•-). The gas-phase chemistry of the electrosprayed radical anions was obtained by collisional-induced dissociation and compared to the relative energy calculations. These results are important for understanding the formation and reactivity of radical anions and to establish their correlation with the reducing properties by electrospray ionization analyses.
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Affiliation(s)
- Ricardo Vessecchi
- Departamento de Química, Faculdade de Filosofia Ciências e Letras, Universidade de São Paulo, Ribeirão Preto, SP 14040-901, Brasil.
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Asher JR, Kaupp M. Car-Parrinello molecular dynamics simulations and EPR property calculations on aqueous ubisemiquinone radical anion. Theor Chem Acc 2008. [DOI: 10.1007/s00214-007-0408-1] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Bally T, Borden WT. Calculations on Open-Shell Molecules: A Beginner's Guide. REVIEWS IN COMPUTATIONAL CHEMISTRY 2007. [DOI: 10.1002/9780470125908.ch1] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/22/2023]
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Lü JM, Rosokha SV, Neretin IS, Kochi JK. Quinones as Electron Acceptors. X-Ray Structures, Spectral (EPR, UV−vis) Characteristics and Electron-Transfer Reactivities of Their Reduced Anion Radicals as Separated vs Contact Ion Pairs. J Am Chem Soc 2006; 128:16708-19. [PMID: 17177421 DOI: 10.1021/ja066471o] [Citation(s) in RCA: 69] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Successful isolation of a series of pure (crystalline) salts of labile quinone anion radicals suitable for X-ray crystallographic analysis allows for the first time their rigorous structural distinction as "separated" ion pairs (SIPs) vs "contact" ion pairs (CIPs). The quantitative evaluation of the precise changes in the geometries of these quinones (Q) upon one-electron reduction to afford the anion radical (Q-*) is viewed relative to the corresponding (two-electron) reduction to the hydroquinone (H2Q) via the Pauling bond-length/bond-order paradigm. Structural consequences between such separated and contact ion pairs as defined in the solid state with those extant in solution are explored in the context of their spectral (EPR, UV-vis) properties and isomerization of tightly bound CIPs. Moreover, the SIP/CIP dichotomy is also examined in intermolecular interactions for rapid (self-exchange) electron transfer between Q-* and Q with second-order rate constants of kET approximately equal to 10(8) M-1 s-1, together with the spectral observation of the paramagnetic intermediates [Q,Q-*]leading to 1:1 adducts, as established by X-ray crystallography.
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Affiliation(s)
- Jian-Ming Lü
- Department of Chemistry, University of Houston, Houston, TX 77204, USA
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Improta R, Barone V. Interplay of Electronic, Environmental, and Vibrational Effects in Determining the Hyperfine Coupling Constants of Organic Free Radicals. Chem Rev 2004; 104:1231-54. [PMID: 15008622 DOI: 10.1021/cr960085f] [Citation(s) in RCA: 299] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Roberto Improta
- Dipartimento di Chimica, Università Federico II, Complesso Universitario Monte S Angelo, Via Cintia, I-80126 Napoli, Italy
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NILSSON JARVID, LYUBARTSEV ALEXANDER, ERIKSSON LEIFA, LAAKSONEN AATTO. Molecular dynamics simulations of ubiquinone; a survey over torsional potentials and hydrogen bonds. Mol Phys 2001. [DOI: 10.1080/00268970110072403] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Puranik M, Chandrasekhar J, Snijders JG, Umapathy S. Time-Resolved Resonance Raman and Density Functional Studies on the Ground State and Short-Lived Intermediates of Tetrabromo-p-benzoquinone. J Phys Chem A 2001. [DOI: 10.1021/jp0104987] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Mrinalini Puranik
- Department of Inorganic and Physical Chemistry, Indian Institute Of Science, Bangalore - 560012, India, Department of Organic Chemistry, Indian Institute Of Science, Bangalore - 560012, India, and Theoretical Chemistry, Materials Science Centre, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Jayaraman Chandrasekhar
- Department of Inorganic and Physical Chemistry, Indian Institute Of Science, Bangalore - 560012, India, Department of Organic Chemistry, Indian Institute Of Science, Bangalore - 560012, India, and Theoretical Chemistry, Materials Science Centre, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Jaap G. Snijders
- Department of Inorganic and Physical Chemistry, Indian Institute Of Science, Bangalore - 560012, India, Department of Organic Chemistry, Indian Institute Of Science, Bangalore - 560012, India, and Theoretical Chemistry, Materials Science Centre, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Siva Umapathy
- Department of Inorganic and Physical Chemistry, Indian Institute Of Science, Bangalore - 560012, India, Department of Organic Chemistry, Indian Institute Of Science, Bangalore - 560012, India, and Theoretical Chemistry, Materials Science Centre, Nijenborgh 4, 9747 AG Groningen, The Netherlands
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Wheeler RA. Quinones and quinoidal radicals in photosynthesis. ACTA ACUST UNITED AC 2001. [DOI: 10.1016/s1380-7323(01)80016-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/07/2023]
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Investigation of the effects of substitution position on the radical anions of chlorobiphenyls. Chem Phys Lett 2000. [DOI: 10.1016/s0009-2614(00)00025-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Wheeler DE, Rodriguez JH, McCusker JK. Density Functional Theory Analysis of Electronic Structure Variations across the Orthoquinone/Semiquinone/Catechol Redox Series. J Phys Chem A 1999. [DOI: 10.1021/jp990166q] [Citation(s) in RCA: 46] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Daniel E. Wheeler
- Department of Chemistry, University of California at Berkeley, Berkeley, California 94720-1460
| | - Jorge H. Rodriguez
- Department of Chemistry, University of California at Berkeley, Berkeley, California 94720-1460
| | - James K. McCusker
- Department of Chemistry, University of California at Berkeley, Berkeley, California 94720-1460
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Himo F, Babcock GT, Eriksson LA. Conformational Analysis of Quinone Anion Radicals in Photosystem II and Photosynthetic Bacteria. J Phys Chem A 1999. [DOI: 10.1021/jp984137b] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Fahmi Himo
- Department of Physics, Stockholm University, Box 6730, S-113 85 Stockholm, Sweden, Department of Chemistry, Michigan State University, East Lansing, Michigan 48824-1322, and Department of Quantum Chemistry, Box 518, Uppsala University, S-751 20 Uppsala, Sweden
| | - Gerald T. Babcock
- Department of Physics, Stockholm University, Box 6730, S-113 85 Stockholm, Sweden, Department of Chemistry, Michigan State University, East Lansing, Michigan 48824-1322, and Department of Quantum Chemistry, Box 518, Uppsala University, S-751 20 Uppsala, Sweden
| | - Leif A. Eriksson
- Department of Physics, Stockholm University, Box 6730, S-113 85 Stockholm, Sweden, Department of Chemistry, Michigan State University, East Lansing, Michigan 48824-1322, and Department of Quantum Chemistry, Box 518, Uppsala University, S-751 20 Uppsala, Sweden
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Raymond KS, Wheeler RA. Compatibility of correlation-consistent basis sets with a hybrid Hartree-Fock/density functional method. J Comput Chem 1999. [DOI: 10.1002/(sici)1096-987x(19990130)20:2<207::aid-jcc3>3.0.co;2-e] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Grafton AK, Wheeler RA. Vibrational projection analysis: New tool for quantitatively comparing vibrational normal modes of similar molecules. J Comput Chem 1998. [DOI: 10.1002/(sici)1096-987x(19981115)19:14<1663::aid-jcc11>3.0.co;2-h] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Grafton AK, Wheeler RA. Vibrational projection analysis: New tool for quantitatively comparing vibrational normal modes of similar molecules. J Comput Chem 1998. [DOI: 10.1002/(sici)1096-987x(19981115)19:14%3c1663::aid-jcc11%3e3.0.co;2-h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Eriksson LA, Himo F, Siegbahn PEM, Babcock GT. Electronic and Magnetic Properties of Neutral and Charged Quinone and Plastoquinone Radicals. J Phys Chem A 1997. [DOI: 10.1021/jp9720451] [Citation(s) in RCA: 50] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Leif A. Eriksson
- Department of Physics, Stockholm University, Box 6730, S-113 85 Stockholm, Sweden, and Department of Chemistry, Michigan State University, East Lansing, Michigan 48824-1322
| | - Fahmi Himo
- Department of Physics, Stockholm University, Box 6730, S-113 85 Stockholm, Sweden, and Department of Chemistry, Michigan State University, East Lansing, Michigan 48824-1322
| | - Per E. M. Siegbahn
- Department of Physics, Stockholm University, Box 6730, S-113 85 Stockholm, Sweden, and Department of Chemistry, Michigan State University, East Lansing, Michigan 48824-1322
| | - Gerald T. Babcock
- Department of Physics, Stockholm University, Box 6730, S-113 85 Stockholm, Sweden, and Department of Chemistry, Michigan State University, East Lansing, Michigan 48824-1322
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Grafton AK, Boesch SE, Wheeler RA. Structures and properties of vitamin K and its radical anion predicted by a hybrid Hartree-Fock/density functional method. ACTA ACUST UNITED AC 1997. [DOI: 10.1016/s0166-1280(97)90363-8] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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