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Kawai K, Fujitsuka M, Maruyama A. Single-Molecule Study of Redox Reaction Kinetics by Observing Fluorescence Blinking. Acc Chem Res 2021; 54:1001-1010. [PMID: 33539066 DOI: 10.1021/acs.accounts.0c00754] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Recent advances in fluorescence microscopy allow us to track chemical reactions at the single-molecule level. Single-molecule measurements make it possible to minimize the amount of sample needed for analysis and diagnosis. Signal amplification is often applied to ultralow-level biomarker detection. Polymerase chain reaction (PCR) is used to detect DNA/RNA, and enzyme-linked immunosorbent assay (ELISA) can sensitively probe antigen-antibody interactions. While these techniques are brilliant and will continue to be used in the future, single-molecule-level measurements would allow us to reduce the time and cost needed to amplify signals.The kinetics of chemical reactions have been studied mainly using ensemble-averaged methods. However, they can hardly distinguish time-dependent fluctuations and static heterogeneity of the kinetics. The information hidden in ensemble-averaged measurements would be extractable from a single-molecule experiment. Thus, single-molecule measurement would provide unique opportunities to investigate unrevealed phenomena and to elucidate the questions in chemistry, physics, and life sciences. Redox reaction, which is triggered by electron transfer, is among the most fundamental and ubiquitous chemical reactions. The redox reaction of a fluorescent molecule results in the formation of radical ions, which are normally nonemissive. In single-molecule-level measurements, the redox reaction causes the fluctuation of fluorescence signals between the bright ON-state and the dark OFF-state, in a phenomenon called blinking. The duration of the OFF-state (τOFF) corresponds to the lifetime of the radical ion state, and its reaction kinetics can be measured as 1/τOFF. Thus, the kinetics of redox reactions of fluorescent molecules can be accessed at the single-molecule level by monitoring fluorescence blinking. One of the key aspects of single-molecule analysis based on blinking is its robustness. A blinking signal with a certain regular pattern enables single fluorescent molecules to be distinguished and resolved from the random background signal.In this Account, we summarize the recent studies on the single-molecule measurement of redox reaction kinetics, with a focus on our group's recent progress. We first introduce the control of redox blinking to increase the photostability of fluorescent molecules. We then demonstrate the control of redox blinking, which allows us to detect target DNA by monitoring the function of a molecular beacon-type probe, and we investigate antigen-antibody interactions at the single-molecule level. By tracing the time-dependent changes in blinking patterns, redox blinking is shown to be adaptable to tracking the structural switching dynamics of RNA, the preQ1 riboswitch. This Account ends with a discussion of our ongoing work on the control of fluorescent blinking. We also discuss the development of devices that allow single-molecule-level analysis in a high-throughput fashion.
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Affiliation(s)
- Kiyohiko Kawai
- The Institute of Scientific and Industrial Research (SANKEN), Osaka University, Mihogaoka 8-1, Ibaraki, Osaka 567-0047, Japan
| | - Mamoru Fujitsuka
- The Institute of Scientific and Industrial Research (SANKEN), Osaka University, Mihogaoka 8-1, Ibaraki, Osaka 567-0047, Japan
| | - Atsushi Maruyama
- Department of Life Science and Technology, Tokyo Institute of Technology, 4259 B-57 Nagatsuta, Midori-ku, Yokohama, Kanagawa 226-8501, Japan
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2
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Cox RP, Sandanayake S, Langford SJ, Bell TDM. Electron Transfer in a Naphthalene Diimide System Studied by Single-Molecule Delayed Fluorescence. Aust J Chem 2020. [DOI: 10.1071/ch19555] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Electron transfer (ET) is a key chemical reaction in nature and has been extensively studied in bulk systems, but remains challenging to investigate at the single-molecule level. A previously reported naphthalene diimide (NDI)-based system (Higginbotham et al., Chem. Commun. 2013, 49, 5061–5063) displays delayed fluorescence with good quantum yield (~0.5) and long-lived (nanoseconds) prompt and delayed fluorescence lifetimes, providing an opportunity to interrogate the underlying ET processes in single molecules. Time-resolved single-molecule fluorescence measurements enabled forward and reverse ET rate constants to be calculated for 45 individual molecules embedded in poly(methylmethacrylate) (PMMA) film. Interpretation of the results within the framework of Marcus–Hush theory for ET demonstrates that variation in both the electronic coupling and the driving force for ET is occurring from molecule to molecule within the PMMA film and over time for individual molecules.
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Haimerl J, Ghosh I, König B, Vogelsang J, Lupton JM. Single-molecule photoredox catalysis. Chem Sci 2018; 10:681-687. [PMID: 30746104 PMCID: PMC6340401 DOI: 10.1039/c8sc03860k] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2018] [Accepted: 10/21/2018] [Indexed: 11/21/2022] Open
Abstract
Photocatalytic dehalogenation by a common dyestuff under aqueous conditions is driven by energy-additive absorption of two photons on the single-molecule level.
The chemistry of life is founded on light, so is it appropriate to think of light as a chemical substance? Planck's quantization offers a metric analogous to Avogadro's number to relate the number of particles to an effective reaction of single molecules and photons to form a new compound. A rhodamine dye molecule serves as a dehalogenating photocatalyst in a consecutive photoelectron transfer (conPET) process which adds the energy of two photons, with the first photon inducing radical formation and the second photon triggering PET to the substrate molecule. Rather than probing catalytic heterogeneity and dynamics on the single-molecule level, single-photon synthesis is demonstrated: the light quantum constitutes a reactant for the single substrate molecule in a dye–driven reaction. The approach illustrates that molecular diffusion and excited-state internal conversion are not limiting factors in conPET reaction kinetics because of catalyst–substrate preassociation. The effect could be common to photoredox catalysis, removing the conventional requirement of long excited-state lifetimes.
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Affiliation(s)
- Josef Haimerl
- Institut für Experimentelle und Angewandte Physik , Universität Regensburg , 93040 Regensburg , Germany .
| | - Indrajit Ghosh
- Institut für Organische Chemie , Universität Regensburg , 93040 Regensburg , Germany
| | - Burkhard König
- Institut für Organische Chemie , Universität Regensburg , 93040 Regensburg , Germany
| | - Jan Vogelsang
- Institut für Experimentelle und Angewandte Physik , Universität Regensburg , 93040 Regensburg , Germany .
| | - John M Lupton
- Institut für Experimentelle und Angewandte Physik , Universität Regensburg , 93040 Regensburg , Germany .
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Das NK, Ghosh S, Jaiswal S, Tewary A, Mukherjee S. Micelles entrapped Cresyl Violet can selectively detect copper and mercury ions in solution: A fluorescence Correlation Spectroscopy investigation. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2017.06.019] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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5
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Lu J, Fan Y, Howard MD, Vaughan JC, Zhang B. Single-Molecule Electrochemistry on a Porous Silica-Coated Electrode. J Am Chem Soc 2017; 139:2964-2971. [PMID: 28132499 DOI: 10.1021/jacs.6b10191] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Here we report the direct observation and quantitative analysis of single redox events on a modified indium-tin oxide (ITO) electrode. The key in the observation of single redox events are the use of a fluorogenic redox species and the nanoconfinement and hindered redox diffusion inside 3-nm-diameter silica nanochannels. A simple electrochemical process was used to grow an ultrathin silica film (∼100 nm) consisting of highly ordered parallel nanochannels exposing the electrode surface from the bottom. The electrode-supported 3-nm-diameter nanochannels temporally trap fluorescent resorufin molecules resulting in hindered molecular diffusion in the vicinity of the electrode surface. Adsorption, desorption, and heterogeneous redox events of individual resorufin molecules can be studied using total-internal reflection fluorescence (TIRF). The rate constants of adsorption and desorption processes of resorufin were characterized from single-molecule analysis to be (1.73 ± 0.08) × 10-4 cm·s-1 and 15.71 ± 0.76 s-1, respectively. The redox events of resorufin to the non-fluorescent dihydroresorufin were investigated by analyzing the change in surface population of single resorufin molecules with applied potential. The scan-rate-dependent molecular counting results (single-molecule fluorescence voltammetry) indicated a surface-controlled electrochemical kinetics of the resorufin reduction on the modified ITO electrode. This study demonstrates the great potential of mesoporous silica as a useful modification scheme for studying single redox events on a variety of transparent substrates such as ITO electrodes and gold or carbon film coated glass electrodes. The ability to electrochemically grow and transfer mesoporous silica films onto other substrates makes them an attractive material for future studies in spatial heterogeneity of electrocatalytic surfaces.
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Affiliation(s)
- Jin Lu
- Department of Chemistry, University of Washington , Seattle, Washington 98195-1700, United States
| | - Yunshan Fan
- Department of Chemistry, University of Washington , Seattle, Washington 98195-1700, United States
| | - Marco D Howard
- Department of Chemistry, University of Washington , Seattle, Washington 98195-1700, United States
| | - Joshua C Vaughan
- Department of Chemistry, University of Washington , Seattle, Washington 98195-1700, United States
| | - Bo Zhang
- Department of Chemistry, University of Washington , Seattle, Washington 98195-1700, United States
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6
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Sasmal DK, Pulido LE, Kasal S, Huang J. Single-molecule fluorescence resonance energy transfer in molecular biology. NANOSCALE 2016; 8:19928-19944. [PMID: 27883140 PMCID: PMC5145784 DOI: 10.1039/c6nr06794h] [Citation(s) in RCA: 61] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Single-molecule fluorescence resonance energy transfer (smFRET) is a powerful technique for studying the conformation dynamics and interactions of individual biomolecules. In this review, we describe the concept and principle of smFRET, illustrate general instrumentation and microscopy settings for experiments, and discuss the methods and algorithms for data analysis. Subsequently, we review applications of smFRET in protein conformational changes, ion channel open-close properties, receptor-ligand interactions, nucleic acid structure regulation, vesicle fusion, and force induced conformational dynamics. Finally, we discuss the main limitations of smFRET in molecular biology.
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Affiliation(s)
- Dibyendu K Sasmal
- The Institute for Molecular Engineering, The University of Chicago, Chicago, IL 60637, USA.
| | - Laura E Pulido
- The Institute for Molecular Engineering, The University of Chicago, Chicago, IL 60637, USA.
| | - Shan Kasal
- The Institute for Molecular Engineering, The University of Chicago, Chicago, IL 60637, USA.
| | - Jun Huang
- The Institute for Molecular Engineering, The University of Chicago, Chicago, IL 60637, USA.
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Electron transfer-based single molecule fluorescence as a probe for nano-environment dynamics. SENSORS 2014; 14:2449-67. [PMID: 24496314 PMCID: PMC3958234 DOI: 10.3390/s140202449] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/14/2013] [Revised: 01/22/2014] [Accepted: 01/27/2014] [Indexed: 11/17/2022]
Abstract
Electron transfer (ET) is one of the most important elementary processes that takes place in fundamental aspects of biology, chemistry, and physics. In this review, we discuss recent research on single molecule probes based on ET. We review some applications, including the dynamics of glass-forming systems, surface binding events, interfacial ET on semiconductors, and the external field-induced dynamics of polymers. All these examples show that the ET-induced changes of fluorescence trajectory and lifetime of single molecules can be used to sensitively probe the surrounding nano-environments.
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Peterson EM, Harris JM. Imaging fluorescent nanoparticles to probe photoinduced charging of a semiconductor-solution interface. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2013; 29:11941-11949. [PMID: 23971867 DOI: 10.1021/la402468k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Optically transparent semiconductors allow simultaneous control of interfacial electrical potential and spectroscopic observation of chemistry near the electrode surface. Care must be taken, however, to avoid unwanted photoexcitation-induced charging of the semiconductor electrode that could influence the results. In this work, we investigate the in situ surface charging by photoexcitation well below the band gap of an optically transparent semiconductor, indium-tin oxide (ITO) electrode. Using total-internal-reflection fluorescence microscopy, the population of ~100-nm negatively charged carboxylate-polystyrene fluorescent nanoparticles at an ITO-aqueous solution interface could be monitored in situ. At positive applied potentials (~0.7 V versus Ag/AgCl), nanoparticles accumulate reversibly in the electrical double-layer of the ITO surface, and the interfacial nanoparticle populations increase with 488-nm excitation intensity. The potential sensitivity of nanoparticle population exhibited no dependence on excitation intensity, varied from 0.1 to 10 W cm(-2), while the onset potential for particle accumulation shifted by as much as 0.3 V. This shift in surface potential appears to be due to photoexcitation-induced charging of the ITO, even though the excitation radiation photon energy, ~2.4 eV, is well below the primary band gap of ITO, >3.5 eV. A kinetic model was developed to determine the photon order of electron-hole generation relative to the electron-hole recombination. The photoexcitation process was found to be first-order in photon flux, suggesting one-photon excitation of an indirect band gap or defect sites, rather than two-photon excitation into the direct band gap. A control experiment was conducted with red-fluorescent carboxylate-polystyrene particles that were counted using 647-nm excitation, where the photon energy is below the indirect band gap or defect site energy and where the optical absorption of the film vanishes. Red illumination between 1 and 15 W cm(-2) produced no detectable shifts in the onset accumulation potential, which is consistent with the negligible optical absorption of the ITO film at this longer wavelength.
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Affiliation(s)
- Eric M Peterson
- Department of Chemistry, University of Utah , 315 South 1400 East, Salt Lake City, Utah 84112-0850, United States
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Johansson PG, Zhang Y, Meyer GJ, Galoppini E. Homoleptic “Star” Ru(II) Polypyridyl Complexes: Shielded Chromophores to Study Charge-Transfer at the Sensitizer-TiO2 Interface. Inorg Chem 2013; 52:7947-57. [DOI: 10.1021/ic4004565] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Affiliation(s)
- Patrik G. Johansson
- Department of Chemistry and Material Science & Engineering, John Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Yongyi Zhang
- Chemistry Department, Rutgers University, 73 Warren Street, Newark, New Jersey
07102, United States
| | - Gerald J. Meyer
- Department of Chemistry and Material Science & Engineering, John Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Elena Galoppini
- Chemistry Department, Rutgers University, 73 Warren Street, Newark, New Jersey
07102, United States
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10
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Lee S, Kang SH. Single-molecule DNA digestion in various alkanethiol-functionalized gold nanopores. Talanta 2013; 107:297-303. [PMID: 23598226 DOI: 10.1016/j.talanta.2013.01.046] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2012] [Revised: 01/14/2013] [Accepted: 01/15/2013] [Indexed: 11/29/2022]
Abstract
This paper presents the alkanethiol-functionalized environmental effects of individual DNA molecules in nanopores on enzyme digestion at the single-molecule level. A template consisting of gold deposited within a solid-state nanoporous polycarbonate membrane was used to trap individual λ-DNA and enzyme molecules. The gold surfaces were modified with various functional groups (-OH, -COOH, -NH3). The enzyme digestion rates of single DNA molecules increased with decreasing nanopore diameters. Surprisingly, the digestion rates in the l-cysteine chemisorbed nanopores were 2.1-2.6 times faster than in the mercaptoethanol chemisorbed gold nanopores, even though these nanopores had equivalent interspacial areas. In addition, the membrane of chemisorbed cysteamine with ionized functional groups of H3N(+) at pH 8.2 had a greater positive influence on the enzyme digestion rate than the membrane of chemisorbed mercaptoproponic acid with ionized carboxyl groups (COO(-)). These results suggest that the three-dimensional environment effect is strongly correlated with the functional group in confined nanopores and can significantly change the enzyme digestion rates for nanopores with different internal areas.
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Affiliation(s)
- Seungah Lee
- Department of Applied Chemistry, College of Applied Science, Kyung Hee University, Yongin-si, Gyeonggi-do 446-701, Republic of Korea
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11
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Young KJ, Martini LA, Milot RL, III RCS, Batista VS, Schmuttenmaer CA, Crabtree RH, Brudvig GW. Light-driven water oxidation for solar fuels. Coord Chem Rev 2012; 256:2503-2520. [PMID: 25364029 PMCID: PMC4214930 DOI: 10.1016/j.ccr.2012.03.031] [Citation(s) in RCA: 238] [Impact Index Per Article: 19.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Light-driven water oxidation is an essential step for conversion of sunlight into storable chemical fuels. Fujishima and Honda reported the first example of photoelectrochemical water oxidation in 1972. In their system, TiO2 was irradiated with ultraviolet light, producing oxygen at the anode and hydrogen at a platinum cathode. Inspired by this system, more recent work has focused on functionalizing nanoporous TiO2 or other semiconductor surfaces with molecular adsorbates, including chromophores and catalysts that absorb visible light and generate electricity (i.e., dye-sensitized solar cells) or trigger water oxidation at low overpotentials (i.e., photocatalytic cells). The physics involved in harnessing multiple photochemical events for multielectron reactions, as required in the four-electron water oxidation process, has been the subject of much experimental and computational study. In spite of significant advances with regard to individual components, the development of highly efficient photocatalytic cells for solar water splitting remains an outstanding challenge. This article reviews recent progress in the field with emphasis on water-oxidation photoanodes inspired by the design of functionalized thin film semiconductors of typical dye-sensitized solar cells.
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Affiliation(s)
- Karin J. Young
- Department of Chemistry, Yale University, P.O. Box 208107, New Haven, CT 06520-8107, USA
| | - Lauren A. Martini
- Department of Chemistry, Yale University, P.O. Box 208107, New Haven, CT 06520-8107, USA
| | - Rebecca L. Milot
- Department of Chemistry, Yale University, P.O. Box 208107, New Haven, CT 06520-8107, USA
| | | | - Victor S. Batista
- Department of Chemistry, Yale University, P.O. Box 208107, New Haven, CT 06520-8107, USA
| | | | - Robert H. Crabtree
- Department of Chemistry, Yale University, P.O. Box 208107, New Haven, CT 06520-8107, USA
| | - Gary W. Brudvig
- Department of Chemistry, Yale University, P.O. Box 208107, New Haven, CT 06520-8107, USA
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12
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Fu Y, Zhang J, Lakowicz JR. Photophysical behaviors of single fluorophores localized on zinc oxide nanostructures. Int J Mol Sci 2012; 13:12100-12112. [PMID: 23109903 PMCID: PMC3472795 DOI: 10.3390/ijms130912100] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2012] [Revised: 09/06/2012] [Accepted: 09/12/2012] [Indexed: 11/16/2022] Open
Abstract
Single-molecule fluorescence spectroscopy has now been widely used to investigate complex dynamic processes which would normally be obscured in an ensemble-averaged measurement. In this report we studied photophysical behaviors of single fluorophores in proximity to zinc oxide nanostructures by single-molecule fluorescence spectroscopy and time-correlated single-photon counting (TCSPC). Single fluorophores on ZnO surfaces showed enhanced fluorescence brightness to various extents compared with those on glass; the single-molecule time trajectories also illustrated pronounced fluctuations of emission intensities, with time periods distributed from milliseconds to seconds. We attribute fluorescence fluctuations to the interfacial electron transfer (ET) events. The fluorescence fluctuation dynamics were found to be inhomogeneous from molecule to molecule and from time to time, showing significant static and dynamic disorders in the interfacial electron transfer reaction processes.
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Affiliation(s)
- Yi Fu
- Center for Fluorescence Spectroscopy, Department of Biochemistry and Molecular Biology, School of Medicine, University of Maryland School of Medicine, 725 Lombard Street, Baltimore, MD 21201, USA; E-Mails: (J.Z.); (J.R.L.)
| | - Jian Zhang
- Center for Fluorescence Spectroscopy, Department of Biochemistry and Molecular Biology, School of Medicine, University of Maryland School of Medicine, 725 Lombard Street, Baltimore, MD 21201, USA; E-Mails: (J.Z.); (J.R.L.)
| | - Joseph R. Lakowicz
- Center for Fluorescence Spectroscopy, Department of Biochemistry and Molecular Biology, School of Medicine, University of Maryland School of Medicine, 725 Lombard Street, Baltimore, MD 21201, USA; E-Mails: (J.Z.); (J.R.L.)
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Chang CL, Tsai PY, Chang YP, Lin KC. Interfacial Electron Transfer from CdSe/ZnS Quantum Dots to TiO2 Nanoparticles: Size Dependence at the Single-Molecule Level. Chemphyschem 2012; 13:2711-20. [DOI: 10.1002/cphc.201200037] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2012] [Revised: 04/10/2012] [Indexed: 11/12/2022]
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14
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Bahng HW, Yoon MC, Lee JE, Murase Y, Yoneda T, Shinokubo H, Osuka A, Kim D. Ensemble and Single-Molecule Spectroscopic Study on Excitation Energy Transfer Processes in 1,3-Phenylene-Linked Perylenebisimide Oligomers. J Phys Chem B 2012; 116:1244-55. [DOI: 10.1021/jp208855u] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
- Hee Won Bahng
- Spectroscopy Laboratory for Functional π-Electronic Systems and Department of Chemistry, Yonsei University, Seoul 120-749, Korea
| | - Min-Chul Yoon
- Spectroscopy Laboratory for Functional π-Electronic Systems and Department of Chemistry, Yonsei University, Seoul 120-749, Korea
| | - Ji-Eun Lee
- Spectroscopy Laboratory for Functional π-Electronic Systems and Department of Chemistry, Yonsei University, Seoul 120-749, Korea
| | - Yuichi Murase
- Department of Chemistry and Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
| | - Tomoki Yoneda
- Department of Chemistry and Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
| | - Hiroshi Shinokubo
- Department of Applied Chemistry, Graduate School of Engineering, Nagoya University, Chikusa-ku, Nagoya 464-8603, Japan
| | - Atsuhiro Osuka
- Department of Chemistry and Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
| | - Dongho Kim
- Spectroscopy Laboratory for Functional π-Electronic Systems and Department of Chemistry, Yonsei University, Seoul 120-749, Korea
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Bian Z, Tachikawa T, Cui SC, Fujitsuka M, Majima T. Single-molecule charge transfer dynamics in dye-sensitized p-type NiO solar cells: influences of insulating Al2O3layers. Chem Sci 2012. [DOI: 10.1039/c1sc00552a] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
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16
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Wu X, Xing G, Tan SLJ, Webster RD, Sum TC, Yeow EKL. Hole transfer dynamics from dye molecules to p-type NiO nanoparticles: effects of processing conditions. Phys Chem Chem Phys 2012; 14:9511-9. [DOI: 10.1039/c2cp40926g] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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17
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Jin S, Lian T. Electron transfer dynamics of single quantum dots on the (110) surface of a rutile TiO2 single crystal. Sci China Chem 2011. [DOI: 10.1007/s11426-011-4431-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Esfandiari NM, Wang Y, Bass JY, Blum SA. Deconvoluting Subensemble Chemical Reaction Kinetics of Platinum–Sulfur Ligand Exchange Detected with Single-Molecule Fluorescence Microscopy. Inorg Chem 2011; 50:9201-3. [DOI: 10.1021/ic2007952] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- N. Melody Esfandiari
- Department of Chemistry, University of California, Irvine, California 92697-2025, United States
| | - Yong Wang
- Department of Chemistry, University of California, Irvine, California 92697-2025, United States
| | - Jonathan Y. Bass
- Department of Chemistry, University of California, Irvine, California 92697-2025, United States
| | - Suzanne A. Blum
- Department of Chemistry, University of California, Irvine, California 92697-2025, United States
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Wang Y, Sevinc PC, He Y, Lu HP. Probing Ground-State Single-Electron Self-Exchange across a Molecule−Metal Interface. J Am Chem Soc 2011; 133:6989-96. [DOI: 10.1021/ja109306r] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Yuanmin Wang
- Department of Chemistry, Center for Photochemical Sciences, Bowling Green State University, Bowling Green, Ohio 43403, United States
| | - Papatya C. Sevinc
- Department of Chemistry, Center for Photochemical Sciences, Bowling Green State University, Bowling Green, Ohio 43403, United States
| | - Yufan He
- Department of Chemistry, Center for Photochemical Sciences, Bowling Green State University, Bowling Green, Ohio 43403, United States
| | - H. Peter Lu
- Department of Chemistry, Center for Photochemical Sciences, Bowling Green State University, Bowling Green, Ohio 43403, United States
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20
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Lu HP. Revealing time bunching effect in single-molecule enzyme conformational dynamics. Phys Chem Chem Phys 2011; 13:6734-49. [PMID: 21409227 DOI: 10.1039/c0cp02860f] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this perspective, we focus our discussion on how the single-molecule spectroscopy and statistical analysis are able to reveal enzyme hidden properties, taking the study of T4 lysozyme as an example. Protein conformational fluctuations and dynamics play a crucial role in biomolecular functions, such as in enzymatic reactions. Single-molecule spectroscopy is a powerful approach to analyze protein conformational dynamics under physiological conditions, providing dynamic perspectives on a molecular-level understanding of protein structure-function mechanisms. Using single-molecule fluorescence spectroscopy, we have probed T4 lysozyme conformational motions under the hydrolysis reaction of a polysaccharide of E. coli B cell walls by monitoring the fluorescence resonant energy transfer (FRET) between a donor-acceptor probe pair tethered to T4 lysozyme domains involving open-close hinge-bending motions. Based on the single-molecule spectroscopic results, molecular dynamics simulation, a random walk model analysis, and a novel 2D statistical correlation analysis, we have revealed a time bunching effect in protein conformational motion dynamics that is critical to enzymatic functions. Bunching effect implies that conformational motion times tend to bunch in a finite and narrow time window. We show that convoluted multiple Poisson rate processes give rise to the bunching effect in the enzymatic reaction dynamics. Evidently, the bunching effect is likely common in protein conformational dynamics involving in conformation-gated protein functions. In this perspective, we will also discuss a new approach of 2D regional correlation analysis capable of analyzing fluctuation dynamics of complex multiple correlated and anti-correlated fluctuations under a non-correlated noise background. Using this new method, we are able to map out any defined segments along the fluctuation trajectories and determine whether they are correlated, anti-correlated, or non-correlated; after which, a cross correlation analysis can be applied for each specific segment to obtain a detailed fluctuation dynamics analysis.
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Affiliation(s)
- H Peter Lu
- Bowling Green State University, Center for Photochemical Sciences, Department of Chemistry, Bowling Green, OH 43403, USA.
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Zhang G, Xiao L, Chen R, Gao Y, Wang X, Jia S. Single-molecule interfacial electron transfer dynamics manipulated by an external electric current. Phys Chem Chem Phys 2011; 13:13815-20. [DOI: 10.1039/c1cp20857h] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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22
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Tan YW, Yang H. Seeing the forest for the trees: fluorescence studies of single enzymes in the context of ensemble experiments. Phys Chem Chem Phys 2010; 13:1709-21. [PMID: 21183988 DOI: 10.1039/c0cp02412k] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Enzymes are remarkable molecular machines that make many difficult biochemical reactions possible under mild biological conditions with incredible precision and efficiency. Our understanding of the working principles of enzymes, however, has not reached the level where one can readily deduce the mechanism and the catalytic rates from an enzyme's structure. Resolving the dynamics that relate the three-dimensional structure of an enzyme to its function has been identified as a key issue. While still challenging to implement, single-molecule techniques have emerged as one of the most useful methods for studying enzymes. We review enzymes studied using single-molecule fluorescent methods but placing them in the context of results from other complementary experimental work done on bulk samples. This review primarily covers three enzyme systems--flavoenzymes, dehydrofolate reductase, and adenylate kinase--with additional enzymes mentioned where appropriate. When the single-molecule experiments are discussed together with other methods aiming at the same scientific question, the weakness, strength, and unique contributions become clear.
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Affiliation(s)
- Yan-Wen Tan
- Department of Physics, Fudan University, No. 220, Handan Rd., Shanghai 200433, China.
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Patil AV, Davis JJ. Visualizing and Tuning Thermodynamic Dispersion in Metalloprotein Monolayers. J Am Chem Soc 2010; 132:16938-44. [DOI: 10.1021/ja1065448] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Amol Virendra Patil
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom
| | - Jason John Davis
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom
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Chen YJ, Tzeng HY, Fan HF, Chen MS, Huang JS, Lin KC. Photoinduced electron transfer of oxazine 1/TiO2 nanoparticles at single molecule level by using confocal fluorescence microscopy. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2010; 26:9050-9060. [PMID: 20426392 DOI: 10.1021/la904273x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
Kinetics of photoinduced electron transfer (ET) from oxazine 1 dye to TiO(2) nanoparticles (NPs) surface is studied at a single molecule level by using confocal fluorescence microscopy. Upon irradiation with a pulsed laser at 630 nm, the fluorescence lifetimes sampled among 100 different dye molecules are determined to yield an average lifetime of 2.9 +/- 0.3 ns, which is close to the value of 3.0 +/- 0.6 ns measured on the bare coverslip. The lifetime proximity suggests that most interfacial electron transfer (IFET) processes for the current system are inefficient, probably caused by physisorption between dye and the TiO(2) film. However, there might exist some molecules which are quenched before fluorescing and fail to be detected. With the aid of autocorrelation analysis under a three-level energy system, the IFET kinetics of single dye molecules in the conduction band of TiO(2) NPs is evaluated to be (1.0 +/- 0.1) x 10(4) s(-1) averaged over 100 single molecules and the back ET rate constant is 4.7 +/- 0.9 s(-1). When a thicker TiO(2) film is substituted, the resultant kinetic data do not make a significant difference. The trend of IFET efficacy agrees with the method of fluorescence lifetime measurements. The obtained forward ET rate constants are about ten times smaller than the photovoltage response measured in an assembled dye-sensitized solar cell. The discrepancy is discussed. The inhomogeneous and fluctuation characters for the IFET process are attributed to microenvironment variation for each single molecule. The obtained ET rates are much slower than the fluorescence relaxation. Such a small ET quantum yield is yet feasibly detectable at a single molecule level.
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Affiliation(s)
- Yi-Ju Chen
- Department of Chemistry, National Taiwan University, and Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 106, Taiwan
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25
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Jin S, Snoeberger RC, Issac A, Stockwell D, Batista VS, Lian T. Single-Molecule Interfacial Electron Transfer in Donor-Bridge-Nanoparticle Acceptor Complexes. J Phys Chem B 2010; 114:14309-19. [DOI: 10.1021/jp911662g] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Shengye Jin
- Department of Chemistry, Emory University, Atlanta, Georgia, 3032 and Department of Chemistry, Yale University, New Haven, Connecticut, 06520-8107
| | - Robert C. Snoeberger
- Department of Chemistry, Emory University, Atlanta, Georgia, 3032 and Department of Chemistry, Yale University, New Haven, Connecticut, 06520-8107
| | - Abey Issac
- Department of Chemistry, Emory University, Atlanta, Georgia, 3032 and Department of Chemistry, Yale University, New Haven, Connecticut, 06520-8107
| | - David Stockwell
- Department of Chemistry, Emory University, Atlanta, Georgia, 3032 and Department of Chemistry, Yale University, New Haven, Connecticut, 06520-8107
| | - Victor S. Batista
- Department of Chemistry, Emory University, Atlanta, Georgia, 3032 and Department of Chemistry, Yale University, New Haven, Connecticut, 06520-8107
| | - Tianquan Lian
- Department of Chemistry, Emory University, Atlanta, Georgia, 3032 and Department of Chemistry, Yale University, New Haven, Connecticut, 06520-8107
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26
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Guo L, Wang Y, Lu HP. Combined Single-Molecule Photon-Stamping Spectroscopy and Femtosecond Transient Absorption Spectroscopy Studies of Interfacial Electron Transfer Dynamics. J Am Chem Soc 2010; 132:1999-2004. [DOI: 10.1021/ja909168e] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Lijun Guo
- Center for Photochemical Sciences, Department of Chemistry, Bowling Green State University, Bowling Green, Ohio 43403
| | - Yuanmin Wang
- Center for Photochemical Sciences, Department of Chemistry, Bowling Green State University, Bowling Green, Ohio 43403
| | - H. Peter Lu
- Center for Photochemical Sciences, Department of Chemistry, Bowling Green State University, Bowling Green, Ohio 43403
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27
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Tachikawa T, Majima T. Single-molecule, single-particle fluorescence imaging of TiO2-based photocatalytic reactions. Chem Soc Rev 2010; 39:4802-19. [DOI: 10.1039/b919698f] [Citation(s) in RCA: 144] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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28
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Schirra LK, Tackett BS, Blumenfeld ML, Monti OLA. Single molecule power-law behavior on a crystalline surface. J Chem Phys 2009; 131:124702. [DOI: 10.1063/1.3230558] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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29
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Wu X, Bell T, Yeow E. Electron Transport in the Long-Range Charge-Recombination Dynamics of Single Encapsulated Dye Molecules on TiO2Nanoparticle Films. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200902596] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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30
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Wu X, Bell T, Yeow E. Electron Transport in the Long-Range Charge-Recombination Dynamics of Single Encapsulated Dye Molecules on TiO2Nanoparticle Films. Angew Chem Int Ed Engl 2009; 48:7379-82. [DOI: 10.1002/anie.200902596] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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31
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Tachikawa T, Majima T. Single-molecule fluorescence imaging of TiO(2) photocatalytic reactions. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2009; 25:7791-802. [PMID: 19402603 DOI: 10.1021/la900790f] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Heterogeneous photocatalysts have both potential and demonstrated applications for use in the water-splitting reaction that produces hydrogen, the degradation of organic pollutants, the surface wettability conversion, etc. In this feature article, we have focused on the in-site observation of various reactive oxygen species (ROS), such as singlet oxygen ((1)O(2)) and the hydroxyl radical ((*)OH), generated by the photoexcitation of TiO(2) nanomaterials using single-molecule fluorescence spectroscopy. The spatially resolved photoluminescence (PL) imaging techniques enable us to determine the location of the (photo)catalytically active sites that are related to the heterogeneously distributed defects on the surface. We also present the results that revealed the formation and reaction dynamics of the photogenerated charge carriers in individual TiO(2) nanoparticles. Furthermore, we introduce the single-molecule single-mismatch detection of the nucleotide sequence upon the photoexcitation of a novel nanoconjugate consisting of TiO(2) and DNA on the basis of the mechanistic aspects. Notably, the present conjugates can recognize the difference in a single nucleotide. Consequently, this article provides a significant opportunity to understand the temporal and spatial distributions of ROS generated during the photoirradiation of TiO(2) nanomaterials and directly explore the microscopic world in many fields ranging from fundamental physics and chemistry to practical applications.
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Affiliation(s)
- Takashi Tachikawa
- The Institute of Scientific and Industrial Research, Osaka University, Mihogaoka 8-1, Ibaraki, Osaka 567-0047, Japan
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32
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Wang Y, Wang X, Lu HP. Probing Single-Molecule Interfacial Geminate Electron−Cation Recombination Dynamics. J Am Chem Soc 2009; 131:9020-5. [DOI: 10.1021/ja902640q] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yuanmin Wang
- Bowling Green State University, Center for Photochemical Sciences, Department of Chemistry, Bowling Green, Ohio 43403
| | - Xuefei Wang
- Bowling Green State University, Center for Photochemical Sciences, Department of Chemistry, Bowling Green, Ohio 43403
| | - H. Peter Lu
- Bowling Green State University, Center for Photochemical Sciences, Department of Chemistry, Bowling Green, Ohio 43403
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33
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Controlling the fluorescence of ordinary oxazine dyes for single-molecule switching and superresolution microscopy. Proc Natl Acad Sci U S A 2009; 106:8107-12. [PMID: 19433792 DOI: 10.1073/pnas.0811875106] [Citation(s) in RCA: 200] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Fluorescent molecular switches have widespread potential for use as sensors, material applications in electro-optical data storages and displays, and superresolution fluorescence microscopy. We demonstrate that adjustment of fluorophore properties and environmental conditions allows the use of ordinary fluorescent dyes as efficient single-molecule switches that report sensitively on their local redox condition. Adding or removing reductant or oxidant, switches the fluorescence of oxazine dyes between stable fluorescent and nonfluorescent states. At low oxygen concentrations, the off-state that we ascribe to a radical anion is thermally stable with a lifetime in the minutes range. The molecular switches show a remarkable reliability with intriguing fatigue resistance at the single-molecule level: Depending on the switching rate, between 400 and 3,000 switching cycles are observed before irreversible photodestruction occurs. A detailed picture of the underlying photoinduced and redox reactions is elaborated. In the presence of both reductant and oxidant, continuous switching is manifested by "blinking" with independently controllable on- and off-state lifetimes in both deoxygenated and oxygenated environments. This "continuous switching mode" is advantageously used for imaging actin filament and actin filament bundles in fixed cells with subdiffraction-limited resolution.
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Vogelsang J, Cordes T, Tinnefeld P. Single-molecule photophysics of oxazines on DNA and its application in a FRET switch. Photochem Photobiol Sci 2009; 8:486-96. [PMID: 19337662 DOI: 10.1039/b822318c] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The role and interplay of triplet states and radical ion states in single-molecule fluorescence spectroscopy has recently been elaborated providing us with new insights into the photophysics and photobleaching pathways of fluorescent dyes. Adjustment of fluorophore redox properties in combination with specific redox properties of the environment, i.e. addition of reducing and oxidizing agents, allows control of the emission properties: it has become possible to suppress blinking and to also induce blinking in single-molecule fluorescence transient by selectively opening and closing specific excited state pathways. Induced blinking is, for example, of interest for super-resolution fluorescence microscopy based on the subsequent localization of single fluorophores. For oxazines this control even allowed the separation of the influence of reducing and oxidizing agents, enabling switching the fluorescence of single fluorophores. Here, we study the factors that contribute to the kinetics of the photophysical pathways more closely with a focus on the photophysics of the oxazine ATTO655 labeled to DNA. Our data show that the oxazine ATTO655 interacts with DNA, shielding it efficiently from reagents in solution. Besides redox reactions, the pH also influences the blinking kinetics and especially the off-times. Moreover, we present the extension of ATTO655 as a single-molecule redox sensor to a ratiometric fluorescence-resonance-energy-transfer based sensor. Therefore, we designed FRET probes that showed the highest possible contrast of FRET changes and demonstrate reversible FRET-switching of Cy3B-ATTO655 DNA constructs.
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Affiliation(s)
- Jan Vogelsang
- Angewandte Physik-Biophysik and Center for NanoScience CeNS, Ludwig-Maximilians-Universität München, Amalienstr. 54, 80799, München, Germany.
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35
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Wang X, Lu HP. 2D regional correlation analysis of single-molecule time trajectories. J Phys Chem B 2009; 112:14920-6. [PMID: 18950223 DOI: 10.1021/jp804453j] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We report a new approach of 2D regional correlation analysis capable of analyzing fluctuation dynamics of complex multiple correlated and anticorrelated fluctuations under a noncorrelated noise background. Using this new method, by changing and scanning the start time and end time along a pair of fluctuation trajectories, we are able to map out any defined segments along the fluctuation trajectories and determine whether they are correlated, anticorrelated, or noncorrelated; after which, a cross-correlation analysis can be applied for each specific segment to obtain a detailed fluctuation dynamics analysis. We specifically discuss an application of this approach to analyze single-molecule fluorescence resonance energy transfer (FRET) fluctuation dynamics where the fluctuations are often complex, although this approach can be useful for analyzing other types of fluctuation dynamics of various physical variables as well.
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Affiliation(s)
- Xuefei Wang
- Bowling Green State University, Center for Photochemical Sciences, Department of Chemistry, Bowling Green, Ohio 43403, USA
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36
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Lei C, Hu D, Ackerman E. Clay nanoparticle-supported single-molecule fluorescence spectroelectrochemistry. NANO LETTERS 2009; 9:655-658. [PMID: 19140768 DOI: 10.1021/nl802998e] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Here we report that clay nanoparticles allow formation of a modified transparent electrode, spontaneous adsorption of fluorescent redox molecules on the clay layer, and thus the subsequent observation of single-molecule fluorescence spectroelectrochemistry. We can trace single-molecule fluorescence spectroelectrochemistry by probing the fluorescence intensity change of individually immobilized single redox molecules modulated via cyclic voltammetric potential scanning. This work opens a new approach to explore interfacial electron transfer mechanisms of redox reactions.
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Affiliation(s)
- Chenghong Lei
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
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37
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Wang Y, Wang X, Ghosh SK, Lu HP. Probing Single-Molecule Interfacial Electron Transfer Dynamics of Porphyrin on TiO2 Nanoparticles. J Am Chem Soc 2009; 131:1479-87. [DOI: 10.1021/ja806988d] [Citation(s) in RCA: 73] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Yuanmin Wang
- Bowling Green State University, Center for Photochemical Sciences, Department of Chemistry, Bowling Green, Ohio 43403
| | - Xuefei Wang
- Bowling Green State University, Center for Photochemical Sciences, Department of Chemistry, Bowling Green, Ohio 43403
| | - Sujit Kumar Ghosh
- Bowling Green State University, Center for Photochemical Sciences, Department of Chemistry, Bowling Green, Ohio 43403
| | - H. Peter Lu
- Bowling Green State University, Center for Photochemical Sciences, Department of Chemistry, Bowling Green, Ohio 43403
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38
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Vogelsang J, Kasper R, Steinhauer C, Person B, Heilemann M, Sauer M, Tinnefeld P. A reducing and oxidizing system minimizes photobleaching and blinking of fluorescent dyes. Angew Chem Int Ed Engl 2008; 47:5465-9. [PMID: 18601270 DOI: 10.1002/anie.200801518] [Citation(s) in RCA: 416] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Jan Vogelsang
- Angewandte Physik-Biophysik, and Center for NanoScience, Ludwig-Maximilians-Universität, Amalienstrasse 54, 80799 München, Germany
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39
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Vogelsang J, Kasper R, Steinhauer C, Person B, Heilemann M, Sauer M, Tinnefeld P. Ein System aus Reduktions‐ und Oxidationsmittel verringert Photobleichen und Blinken von Fluoreszenzfarbstoffen. Angew Chem Int Ed Engl 2008. [DOI: 10.1002/ange.200801518] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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40
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Yang J, Park M, Yoon ZS, Hori T, Peng X, Aratani N, Dedecker P, Hotta JI, Uji-i H, Sliwa M, Hofkens J, Osuka A, Kim D. Excitation Energy Migration Processes in Cyclic Porphyrin Arrays Probed by Single Molecule Spectroscopy. J Am Chem Soc 2008; 130:1879-84. [DOI: 10.1021/ja075701b] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Jaesung Yang
- Center for Ultrafast Optical Characteristics Control and Department of Chemistry, Yonsei University, Seoul 120-749, Korea, Department of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan, and Department of Chemistry, Katholieke Universiteit Leuven and Institute for Nanoscale Physics and Chemistry (INPAC), Celestijnenlaan 200F, 3001 Heverlee, Belgium
| | - Mira Park
- Center for Ultrafast Optical Characteristics Control and Department of Chemistry, Yonsei University, Seoul 120-749, Korea, Department of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan, and Department of Chemistry, Katholieke Universiteit Leuven and Institute for Nanoscale Physics and Chemistry (INPAC), Celestijnenlaan 200F, 3001 Heverlee, Belgium
| | - Zin Seok Yoon
- Center for Ultrafast Optical Characteristics Control and Department of Chemistry, Yonsei University, Seoul 120-749, Korea, Department of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan, and Department of Chemistry, Katholieke Universiteit Leuven and Institute for Nanoscale Physics and Chemistry (INPAC), Celestijnenlaan 200F, 3001 Heverlee, Belgium
| | - Takaaki Hori
- Center for Ultrafast Optical Characteristics Control and Department of Chemistry, Yonsei University, Seoul 120-749, Korea, Department of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan, and Department of Chemistry, Katholieke Universiteit Leuven and Institute for Nanoscale Physics and Chemistry (INPAC), Celestijnenlaan 200F, 3001 Heverlee, Belgium
| | - Xiaobin Peng
- Center for Ultrafast Optical Characteristics Control and Department of Chemistry, Yonsei University, Seoul 120-749, Korea, Department of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan, and Department of Chemistry, Katholieke Universiteit Leuven and Institute for Nanoscale Physics and Chemistry (INPAC), Celestijnenlaan 200F, 3001 Heverlee, Belgium
| | - Naoki Aratani
- Center for Ultrafast Optical Characteristics Control and Department of Chemistry, Yonsei University, Seoul 120-749, Korea, Department of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan, and Department of Chemistry, Katholieke Universiteit Leuven and Institute for Nanoscale Physics and Chemistry (INPAC), Celestijnenlaan 200F, 3001 Heverlee, Belgium
| | - Peter Dedecker
- Center for Ultrafast Optical Characteristics Control and Department of Chemistry, Yonsei University, Seoul 120-749, Korea, Department of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan, and Department of Chemistry, Katholieke Universiteit Leuven and Institute for Nanoscale Physics and Chemistry (INPAC), Celestijnenlaan 200F, 3001 Heverlee, Belgium
| | - Jun-ichi Hotta
- Center for Ultrafast Optical Characteristics Control and Department of Chemistry, Yonsei University, Seoul 120-749, Korea, Department of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan, and Department of Chemistry, Katholieke Universiteit Leuven and Institute for Nanoscale Physics and Chemistry (INPAC), Celestijnenlaan 200F, 3001 Heverlee, Belgium
| | - Hiroshi Uji-i
- Center for Ultrafast Optical Characteristics Control and Department of Chemistry, Yonsei University, Seoul 120-749, Korea, Department of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan, and Department of Chemistry, Katholieke Universiteit Leuven and Institute for Nanoscale Physics and Chemistry (INPAC), Celestijnenlaan 200F, 3001 Heverlee, Belgium
| | - Michel Sliwa
- Center for Ultrafast Optical Characteristics Control and Department of Chemistry, Yonsei University, Seoul 120-749, Korea, Department of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan, and Department of Chemistry, Katholieke Universiteit Leuven and Institute for Nanoscale Physics and Chemistry (INPAC), Celestijnenlaan 200F, 3001 Heverlee, Belgium
| | - Johan Hofkens
- Center for Ultrafast Optical Characteristics Control and Department of Chemistry, Yonsei University, Seoul 120-749, Korea, Department of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan, and Department of Chemistry, Katholieke Universiteit Leuven and Institute for Nanoscale Physics and Chemistry (INPAC), Celestijnenlaan 200F, 3001 Heverlee, Belgium
| | - Atsuhiro Osuka
- Center for Ultrafast Optical Characteristics Control and Department of Chemistry, Yonsei University, Seoul 120-749, Korea, Department of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan, and Department of Chemistry, Katholieke Universiteit Leuven and Institute for Nanoscale Physics and Chemistry (INPAC), Celestijnenlaan 200F, 3001 Heverlee, Belgium
| | - Dongho Kim
- Center for Ultrafast Optical Characteristics Control and Department of Chemistry, Yonsei University, Seoul 120-749, Korea, Department of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan, and Department of Chemistry, Katholieke Universiteit Leuven and Institute for Nanoscale Physics and Chemistry (INPAC), Celestijnenlaan 200F, 3001 Heverlee, Belgium
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Nicolet AAL, Bordat P, Hofmann C, Kol'chenko MA, Kozankiewicz B, Brown R, Orrit M. Single Dibenzoterrylene Molecules in an Anthracene Crystal: Main Insertion Sites. Chemphyschem 2007; 8:1929-36. [PMID: 17680586 DOI: 10.1002/cphc.200700340] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
We present a spectroscopic study of the properties of the two principal insertion sites (at 785.1 and 794.3 nm) of single dibenzoterrylene molecules in anthracene single crystals at cryogenic temperatures. We measured the temperature dependence of the line width, the orientation of the transition dipole moments, and the Stark effect. We performed molecular dynamics simulations, which show that one dibenzoterrylene molecule preferably replaces three anthracene molecules. From simulated annealing, we derive the molecular conformations in the most stable insertion sites and the orientations of the transition dipole moments. The good agreement between the spectroscopic results and the simulations allows us to propose unambiguous structures for the two principal spectroscopic sites.
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Tachikawa T, Cui SC, Tojo S, Fujitsuka M, Majima T. Nanoscopic heterogeneities in adsorption and electron transfer processes of perylene diimide dye on TiO2 nanoparticles studied by single-molecule fluorescence spectroscopy. Chem Phys Lett 2007. [DOI: 10.1016/j.cplett.2007.06.066] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Nicolet AAL, Hofmann C, Kol'chenko MA, Kozankiewicz B, Orrit M. Single Dibenzoterrylene Molecules in an Anthracene Crystal: Spectroscopy and Photophysics. Chemphyschem 2007; 8:1215-20. [PMID: 17492728 DOI: 10.1002/cphc.200700091] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
We study single dibenzoterrylene molecules in an anthracene single crystal at 1.4 K in two insertion sites at 785.1 and 794.3 nm. The single-molecule zero-phonon lines are narrow (about 30 MHz), intense (the detected fluorescence rates at saturation reach 100,000 counts s(-1)), and very photostable. The intersystem-crossing yield is extremely low (10(-7) or lower). All of these features are hallmarks of an excellent system for high-resolution spectroscopy and nanoscale probing at cryogenic temperatures.
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Palacios RE, Fan FRF, Bard AJ, Barbara PF. Single-Molecule Spectroelectrochemistry (SMS-EC). J Am Chem Soc 2006; 128:9028-9. [PMID: 16834364 DOI: 10.1021/ja062848e] [Citation(s) in RCA: 108] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We introduce single-molecule spectroelectrochemistry (SMS-EC), a powerful new technique for studying electrochemical kinetics in highly heterogeneous systems. This technique uses fluorescence single-molecule spectroscopy to indirectly measure electrochemical kinetics one molecule at a time, offering for the first time the distribution of key electrochemical variables, such as the half-wave potential, E1/2, not just the ensemble averages. In SMS-EC, the potential of the working electrode of an electrochemical cell is linearly scanned while simultaneously measuring the florescence intensity, Ifl(t), of individual single molecules as a function of time in a wide-field microscope. SMS-EC is used herein to study the oxidation at an indium tin oxide (ITO) electrode of single molecules of the organic conjugated polymer F8BT. The results reveal both excited singlet state and ground state oxidation of F8BT. The latter process occurs over a narrow distribution of single-molecule half-wave potential values, indicating a relatively uniform electrochemical potential at the electrode.
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Affiliation(s)
- Rodrigo E Palacios
- Department of Chemistry and Biochemistry and the Center for Nano- and Molecular Science and Technology, University of Texas, Austin, Texas 78712, USA
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Michalet X, Weiss S, Jäger M. Single-molecule fluorescence studies of protein folding and conformational dynamics. Chem Rev 2006; 106:1785-813. [PMID: 16683755 PMCID: PMC2569857 DOI: 10.1021/cr0404343] [Citation(s) in RCA: 415] [Impact Index Per Article: 23.1] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Xavier Michalet
- Department of Chemistry & Biochemistry, University of California, Los Angeles, 607 Charles E. Young Drive East, Los Angeles, California 90095
| | - Shimon Weiss
- Department of Chemistry & Biochemistry, University of California, Los Angeles, 607 Charles E. Young Drive East, Los Angeles, California 90095
| | - Marcus Jäger
- Department of Chemistry & Biochemistry, University of California, Los Angeles, 607 Charles E. Young Drive East, Los Angeles, California 90095
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Ghorai PK, Matyushov DV. Solvent reorganization of electron transitions in viscous solvents. J Chem Phys 2006; 124:144510. [PMID: 16626217 DOI: 10.1063/1.2185102] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Abstract
We develop a model of electron transfer reactions at conditions of nonergodicity when the time of solvent relaxation crosses the observation time window set up by the reaction rate. Solvent reorganization energy of intramolecular electron transfer in a charge-transfer molecule dissolved in water and acetonitrile is studied by molecular dynamics simulations at varying temperatures. We observe a sharp decrease of the reorganization energy at a temperature identified as the temperature of structural arrest due to cage effect, as discussed by the mode-coupling theory. This temperature also marks the onset of the enhancement of translational diffusion relative to rotational relaxation signaling the breakdown of the Stokes-Einstein relation. The change in the reorganization energy at the transition temperature reflects the dynamical arrest of the slow, collective relaxation of the solvent related to the relaxation of the solvent dipolar polarization. An analytical theory proposed to describe this effect agrees well with both the simulations and experimental Stokes shift data. The theory is applied to the analysis of charge-transfer kinetics in a low-temperature glass former. We show that the reorganization energy is substantially lower than its equilibrium value for the low-temperature portion of the data. The theory predicts the possibility of discontinuous changes in the dependence of the electron transfer rate on the free energy gap when the reaction switches between ergodic and nonergodic regimes.
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Affiliation(s)
- Pradip K Ghorai
- Department of Chemistry, Arizona State University, Tempe, Arizona 85287-1604, USA
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Renn A, Seelig J, Sandoghdar V. Oxygen-dependent photochemistry of fluorescent dyes studied at the single molecule level. Mol Phys 2006. [DOI: 10.1080/00268970500361861] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Ghorai PK, Matyushov DV. Reorganization Energy of Electron Transfer in Viscous Solvents above the Glass Transition. J Phys Chem B 2006; 110:1866-71. [PMID: 16471757 DOI: 10.1021/jp055235h] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We present a molecular-dynamics study of the solvent reorganization energy of electron transfer in supercooled water. We observe a sharp decrease of the reorganization energy at a temperature identified as the temperature of structural arrest due to cage effect as discussed by the mode coupling theory. Both the heat capacity and dielectric susceptibility of the pure water show sharp drops at about the same temperature. This temperature also marks the onset of the enhancement of translational diffusion relative to rotational relaxation signaling the breakdown of the Stokes-Einstein relation. The change in the reorganization energy at the transition temperature reflects the dynamical arrest of the slow, collective relaxation of the solvent related to Debye relaxation of the solvent dipolar polarization.
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Affiliation(s)
- Pradip K Ghorai
- Department of Chemistry and Biochemistry and the Center for the Early Events in Photosynthesis, Arizona State University, P.O. Box 871604, Tempe, Arizona 85287-1604, USA
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Pan D, Hu D, Lu HP. Probing Inhomogeneous Vibrational Reorganization Energy Barriers of Interfacial Electron Transfer. J Phys Chem B 2005; 109:16390-5. [PMID: 16853083 DOI: 10.1021/jp058043v] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
An atomic force microscopy (AFM) and confocal Raman microscopy study of the interfacial electron transfer of a dye-sensitization system, i.e., alizarin adsorbed upon TiO(2) nanoparticles, has revealed the distribution of the mode-specific vibrational reorganization energies encompassing different local sites ( approximately 250-nm spatial resolution). Our experimental results suggest inhomogeneous vibrational reorganization energy barriers and different Franck-Condon coupling factors of the interfacial electron transfer. The total vibrational reorganization energy was inhomogeneous from site to site; specifically, mode-specific analyses indicated that energy distributions were inhomogeneous for bridging normal modes and less inhomogeneous or homogeneous for nonbridging normal modes, especially for modes far away from the alizarin-TiO(2) coupling hydroxyl modes. The results demonstrate a significant step forward in characterizing site-specific inhomogeneous interfacial charge-transfer dynamics.
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Affiliation(s)
- Duohai Pan
- Pacific Northwest National Laboratory, Fundamental Science Division, Richland, Washington 99352, USA
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