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Yamamoto A, Sakamaki Y, Abuillan W, Konovalov O, Ueno Y, Tanaka M. Structural and Mechanical Characterization of DNA-Tethered Membranes on Graphene. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024; 40:16530-16537. [PMID: 39046847 DOI: 10.1021/acs.langmuir.4c01957] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/27/2024]
Abstract
Lipid membranes that are separated from the surface of graphene by DNA tethers were prepared by surface functionalization with pyrene coupled to single-stranded DNA (ssDNA), followed by self-assembly of the mixture of ssDNA-functionalized phospholipid and the matrix phospholipids. The formation of uniform membranes was confirmed by fluorescence microscopy, and the structures of the systems before and after hybridization in the direction perpendicular to the global plane of the membranes were investigated using high-energy X-ray reflectivity. The thickness values of the DNA spacers (15 and 37 bp) calculated from the best-fit results were less than the expected thicknesses of the double-stranded DNA (dsDNA) chains taking the upright conformation, indicating that the DNA spacers are tilted with respect to the direction normal to the surface. The Young's moduli of the DNA-tethered membranes obtained by AFM nanoindentation showed higher values than the membranes with no DNA tethers, which suggests that the DNA layer resists against the compression, lifting up the membrane. Intriguingly, the presence of DNA tethers caused no increase in the yield depth. The smaller thickness values as well as the unchanged yield depth suggest that the dsDNA chains can tilt and rotate, which can be attributed to the flexible pyrene-DNA junction.
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Affiliation(s)
- Akihisa Yamamoto
- Center for Integrative Medicine and Physics, Institute for Advanced Study, Kyoto University, Kyoto 606-8501, Japan
| | - Yusuke Sakamaki
- Physical Chemistry of Biosystems, Institute of Physical Chemistry, Heidelberg University, 69120 Heidelberg, Germany
| | - Wasim Abuillan
- Physical Chemistry of Biosystems, Institute of Physical Chemistry, Heidelberg University, 69120 Heidelberg, Germany
| | - Oleg Konovalov
- European Synchrotron Radiation Facility (ESRF), 38043 Grenoble, France
| | - Yuko Ueno
- NTT Basic Research Laboratories, NTT Corporation, Atsugi, Kanagawa 243-0198, Japan
| | - Motomu Tanaka
- Center for Integrative Medicine and Physics, Institute for Advanced Study, Kyoto University, Kyoto 606-8501, Japan
- Physical Chemistry of Biosystems, Institute of Physical Chemistry, Heidelberg University, 69120 Heidelberg, Germany
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2
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Weissenfeld F, Wesenberg L, Nakahata M, Müller M, Tanaka M. Modulation of wetting of stimulus responsive polymer brushes by lipid vesicles: experiments and simulations. SOFT MATTER 2023; 19:2491-2504. [PMID: 36942886 DOI: 10.1039/d2sm01673g] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
The interactions between vesicle and substrate have been studied by simulation and experiment. We grafted polyacrylic acid brushes containing cysteine side chains at a defined area density on planar lipid membranes. Specular X-ray reflectivity data indicated that the addition of Cd2+ ions induces the compaction of the polymer brush layer and modulates the adhesion of lipid vesicles. Using microinterferometry imaging, we determined the onset level, [CdCl2] = 0.25 mM, at which the wetting of the vesicle emerges. The characteristics of the interactions between vesicle and brush were quantitatively evaluated by the shape of the vesicle near the substrate and height fluctuations of the membrane in contact with brushes. To analyze these experiments, we have systematically studied the shape and adhesion of axially symmetric vesicles for finite-range membrane-substrate interaction, i.e., a relevant experimental characteristic, through simulations. The wetting of vesicles sensitively depends on the interaction range and the approximate estimates of the capillary length change significantly, depending on the adhesion strength. We found, however, that the local transversality condition that relates the maximal curvature at the edge of the adhesion zone to the adhesion strength remains rather accurate even for a finite interaction range as long as the vesicle is large compared to the interaction range.
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Affiliation(s)
- Felix Weissenfeld
- Physical Chemistry of Biosystems, Institute of Physical Chemistry, Heidelberg University, 69120 Heidelberg, Germany.
| | - Lucia Wesenberg
- Institute for Theoretical Physics, Georg-August University, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany.
| | - Masaki Nakahata
- Department of Materials Engineering Science, Graduate School of Engineering Science, Osaka University, 560-8531 Osaka, Japan
- Department of Macromolecular Science, Graduate School of Science, Osaka University, 560-8531 Osaka, Japan
| | - Marcus Müller
- Institute for Theoretical Physics, Georg-August University, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany.
| | - Motomu Tanaka
- Physical Chemistry of Biosystems, Institute of Physical Chemistry, Heidelberg University, 69120 Heidelberg, Germany.
- Center for Advanced Study, Institute for Advanced Study, Kyoto University, 606-8501 Kyoto, Japan
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Pusterla J, Scoppola E, Appel C, Mukhina T, Shen C, Brezesinski G, Schneck E. Characterization of lipid bilayers adsorbed to functionalized air/water interfaces. NANOSCALE 2022; 14:15048-15059. [PMID: 36200471 DOI: 10.1039/d2nr03334h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Lipid bilayers immobilized in planar geometries, such as solid-supported or "floating" bilayers, have enabled detailed studies of biological membranes with numerous experimental techniques, notably X-ray and neutron reflectometry. However, the presence of a solid support also has disadvantages as it complicates the use of spectroscopic techniques as well as surface rheological measurements that would require surface deformations. Here, in order to overcome these limitations, we investigate lipid bilayers adsorbed to inherently soft and experimentally well accessible air/water interfaces that are functionalized with Langmuir monolayers of amphiphiles. The bilayers are characterized with ellipsometry, X-ray scattering, and X-ray fluorescence. Grazing-incidence X-ray diffraction reveals that lipid bilayers in a chain-ordered state can have significantly different structural features than regular Langmuir monolayers of the same composition. Our results suggest that bilayers at air/water interfaces may be well suited for fundamental studies in the field of membrane biophysics.
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Affiliation(s)
- Julio Pusterla
- Institute for Condensed Matter Physics, TU Darmstadt, Hochschulstrasse 8, 64289 Darmstadt, Germany.
| | - Ernesto Scoppola
- Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476 Potsdam, Germany
| | - Christian Appel
- Institute for Condensed Matter Physics, TU Darmstadt, Hochschulstrasse 8, 64289 Darmstadt, Germany.
| | - Tetiana Mukhina
- Institute for Condensed Matter Physics, TU Darmstadt, Hochschulstrasse 8, 64289 Darmstadt, Germany.
| | - Chen Shen
- Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
| | - Gerald Brezesinski
- Institute for Condensed Matter Physics, TU Darmstadt, Hochschulstrasse 8, 64289 Darmstadt, Germany.
| | - Emanuel Schneck
- Institute for Condensed Matter Physics, TU Darmstadt, Hochschulstrasse 8, 64289 Darmstadt, Germany.
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Czajor J, Abuillan W, Nguyen DV, Heidebrecht C, Mondarte EA, Konovalov OV, Hayashi T, Felder-Flesch D, Kaufmann S, Tanaka M. Dendronized oligoethylene glycols with phosphonate tweezers for cell-repellent coating of oxide surfaces: coarse-scale and nanoscopic interfacial forces. RSC Adv 2021; 11:17727-17733. [PMID: 35480187 PMCID: PMC9033241 DOI: 10.1039/d1ra02571f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Accepted: 05/10/2021] [Indexed: 11/21/2022] Open
Abstract
Coarse-scale and nanoscopic interfacial force measurements unraveled how dendronized oligoethylene glycols with phosphonate tweezers prevent non-specific cell adhesion to oxide surfaces.
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Affiliation(s)
- Julian Czajor
- Physical Chemistry of Biosystems
- Institute of Physical Chemistry
- Heidelberg University
- 69120 Heidelberg
- Germany
| | - Wasim Abuillan
- Physical Chemistry of Biosystems
- Institute of Physical Chemistry
- Heidelberg University
- 69120 Heidelberg
- Germany
| | - Dinh Vu Nguyen
- Institut de Physique et Chimie des Matériaux de Strasbourg (IPCMS)
- University of Strasbourg
- 67034 Strasbourg
- France
| | - Christopher Heidebrecht
- Physical Chemistry of Biosystems
- Institute of Physical Chemistry
- Heidelberg University
- 69120 Heidelberg
- Germany
| | - Evan A. Mondarte
- Department of Materials Science and Engineering
- School of Materials and Chemical Technology
- Tokyo Institute of Technology
- Japan
| | | | - Tomohiro Hayashi
- Department of Materials Science and Engineering
- School of Materials and Chemical Technology
- Tokyo Institute of Technology
- Japan
- JST-PRESTO
| | - Delphine Felder-Flesch
- Institut de Physique et Chimie des Matériaux de Strasbourg (IPCMS)
- University of Strasbourg
- 67034 Strasbourg
- France
- SUPERBRANCHE SAS
| | - Stefan Kaufmann
- Physical Chemistry of Biosystems
- Institute of Physical Chemistry
- Heidelberg University
- 69120 Heidelberg
- Germany
| | - Motomu Tanaka
- Physical Chemistry of Biosystems
- Institute of Physical Chemistry
- Heidelberg University
- 69120 Heidelberg
- Germany
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Abstract
A new method to quantify the influence of mobilization agents on the dynamics of human hematopoietic stem and progenitor cells (HSPC) is introduced. Different from the microscopy-based high-content screening relying on multiple staining, machine learning, and molecular-level perturbation, the proposed method sheds light on the "dynamics" of HSPC in the presence of extrinsic factors, including SDF1α and mobilization agents. A well-defined model of the bone marrow niche is fabricated by the deposition of planar lipid membranes on glass slides (called supported membranes) displaying ligand molecules at precisely controlled surface densities. The dynamics of human HSPC, CD34+ cells from umbilical cord blood or peripheral blood, are monitored by time-lapse, live cell imaging with a standard phase-contrast microscopy or a specially designed microinterferometry in the absence or presence of mobilization agents. After extracting the contour of each cell, one can analyze the dynamics of cell "shapes" step-by-step, yielding various levels of information ranging from the principal mode of deformation, the persistence of deformation patterns, and the energy consumption by HSPC in the absence and presence of mobilization agents. Moreover, by tracking the migration trajectories of HSPC, one can gain insight how mobilization agents influence the "motion" of HSPC. As these readouts can be connected to a theoretical model, this strategy enables one to classify the influence of not only mobilization agents but also target-specific inhibitors or other treatments in quantitative indices.
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Tanaka M. Interplays of Interfacial Forces Modulate Structure and Function of Soft and Biological Matters in Aquatic Environments. Front Chem 2020; 8:165. [PMID: 32257995 PMCID: PMC7089937 DOI: 10.3389/fchem.2020.00165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2019] [Accepted: 02/25/2020] [Indexed: 11/22/2022] Open
Abstract
Water had been considered as a passive matrix that merely fills up the space, supporting the diffusion of solute molecules. In the past several decades, a number of studies have demonstrated that water play vital roles in regulating structural orders of biological systems over several orders of magnitude. Water molecules take versatile structures, many of which are transient. Water molecules act as hydrogen bond donors as well as acceptors and biochemical reactions utilize water molecules as nucleophiles. Needless to say, the same principle holds for the synthetic materials that function under water: the conformation, dynamics and functions of molecules are significantly influenced by the surrounding water. This review sheds light on how the structure and function of soft and biological matter in aquatic environments are modulated by the orchestration of various interfacial forces.
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Affiliation(s)
- Motomu Tanaka
- Physical Chemistry of Biosystems, Institute of Physical Chemistry, Heidelberg University, Heidelberg, Germany
- Center for Integrative Medicine and Physics, Institute for Advanced Study, Kyoto University, Kyoto, Japan
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Narayanan T, Konovalov O. Synchrotron Scattering Methods for Nanomaterials and Soft Matter Research. MATERIALS (BASEL, SWITZERLAND) 2020; 13:E752. [PMID: 32041363 PMCID: PMC7040635 DOI: 10.3390/ma13030752] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/14/2019] [Revised: 01/29/2020] [Accepted: 01/31/2020] [Indexed: 12/17/2022]
Abstract
This article aims to provide an overview of broad range of applications of synchrotron scattering methods in the investigation of nanoscale materials. These scattering techniques allow the elucidation of the structure and dynamics of nanomaterials from sub-nm to micron size scales and down to sub-millisecond time ranges both in bulk and at interfaces. A major advantage of scattering methods is that they provide the ensemble averaged information under in situ and operando conditions. As a result, they are complementary to various imaging techniques which reveal more local information. Scattering methods are particularly suitable for probing buried structures that are difficult to image. Although, many qualitative features can be directly extracted from scattering data, derivation of detailed structural and dynamical information requires quantitative modeling. The fourth-generation synchrotron sources open new possibilities for investigating these complex systems by exploiting the enhanced brightness and coherence properties of X-rays.
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Hörning M, Nakahata M, Linke P, Yamamoto A, Veschgini M, Kaufmann S, Takashima Y, Harada A, Tanaka M. Dynamic Mechano-Regulation of Myoblast Cells on Supramolecular Hydrogels Cross-Linked by Reversible Host-Guest Interactions. Sci Rep 2017; 7:7660. [PMID: 28794475 PMCID: PMC5550483 DOI: 10.1038/s41598-017-07934-x] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2017] [Accepted: 07/05/2017] [Indexed: 01/09/2023] Open
Abstract
A new class of supramolecular hydrogels, cross-linked by host-guest interactions between β-cyclodextrin (βCD) and adamantane, were designed for the dynamic regulation of cell-substrate interactions. The initial substrate elasticity can be optimized by selecting the molar fraction of host- and guest monomers for the target cells. Moreover, owing to the reversible nature of host-guest interactions, the magnitude of softening and stiffening of the substrate can be modulated by varying the concentrations of free, competing host molecules (βCD) in solutions. By changing the substrate elasticity at a desired time point, it is possible to switch the micromechanical environments of cells. We demonstrated that the Young's modulus of our "host-guest gels", 4-11 kPa, lies in an optimal range not only for static (ex situ) but also for dynamic (in situ) regulation of cell morphology and cytoskeletal ordering of myoblasts. Compared to other stimulus-responsive materials that can either change the elasticity only in one direction or rely on less biocompatible stimuli such as UV light and temperature change, our supramolecular hydrogel enables to reversibly apply mechanical cues to various cell types in vitro without interfering cell viability.
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Affiliation(s)
- Marcel Hörning
- Institute for Integrated Cell-Material Science (WPI iCeMS), Kyoto University, Kyoto, 606-8501, Japan
- Institute of Biomaterials and Biomolecular Systems (IBBS), University of Stuttgart, 70569, Stuttgart, Germany
| | - Masaki Nakahata
- Project Research Center for Fundamental Sciences, Graduate School of Science, Osaka University, 1-1 Machikaneyama-cho, Toyonaka, Osaka, 560-0043, Japan
- Division of Chemical Engineering, Department of Materials Engineering Science, Graduate School of Engineering Science, Osaka University, 1-3 Machikaneyama-cho, Toyonaka, Osaka, 560-8531, Japan
| | - Philipp Linke
- Physical Chemistry of Biosystems, University of Heidelberg, D69120, Heidelberg, Germany
| | - Akihisa Yamamoto
- Institute for Integrated Cell-Material Science (WPI iCeMS), Kyoto University, Kyoto, 606-8501, Japan
| | - Mariam Veschgini
- Physical Chemistry of Biosystems, University of Heidelberg, D69120, Heidelberg, Germany
| | - Stefan Kaufmann
- Physical Chemistry of Biosystems, University of Heidelberg, D69120, Heidelberg, Germany
| | - Yoshinori Takashima
- Department of Macromolecular Science, Graduate School of Science, Osaka University, 1-1 Machikaneyama-cho, Toyonaka, Osaka, 560-0043, Japan
| | - Akira Harada
- Project Research Center for Fundamental Sciences, Graduate School of Science, Osaka University, 1-1 Machikaneyama-cho, Toyonaka, Osaka, 560-0043, Japan.
| | - Motomu Tanaka
- Institute for Integrated Cell-Material Science (WPI iCeMS), Kyoto University, Kyoto, 606-8501, Japan.
- Physical Chemistry of Biosystems, University of Heidelberg, D69120, Heidelberg, Germany.
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Dai W, Lee LT, Schütz A, Zelenay B, Zheng Z, Borgschulte A, Döbeli M, Abuillan W, Konovalov OV, Tanaka M, Schlüter AD. Three-Legged 2,2'-Bipyridine Monomer at the Air/Water Interface: Monolayer Structure and Reactions with Ni(II) Ions from the Subphase. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:1646-1654. [PMID: 28125880 DOI: 10.1021/acs.langmuir.6b04282] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
The behavior of compound 2 [1,3,5-tri(2,2'-bipyridin-5-yl)benzene] with three bipyridine units arranged in a star geometry is investigated in the presence and absence of Ni(ClO4)2. Its properties at the air-water interface as well as after transfer onto a solid substrate are studied by several techniques including Brewster angle microscopy, X-ray reflectivity, neutron reflectivity, X-ray photoelectron spectroscopy, Rutherford backscattering spectrometry, and atomic force microscopy combined with optical microscopy. It is found that compound 2 within the monolayers formed stays almost vertical at the interface and that at high Ni2+/2 (Ni2+/2 = 4000, 20'000) ratios two of the three bipyridine units of 2 are complexed, resulting in supramolecular sheets that are likely composed of arrays of linear metal-organic complexation polymers.
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Affiliation(s)
- Wenyang Dai
- Laboratory of Polymer Chemistry, Department of Materials, ETH Zurich , Vladimir-Prelog-Weg 5, 8093 Zürich, Switzerland
| | - Lay-Theng Lee
- Laboratoire Léon Brillouin, CEA-CNRS, Université Paris-Saclay, CEA-Saclay , 91191 Gif-sur-Yvette Cedex, France
| | - Andri Schütz
- Laboratory of Polymer Chemistry, Department of Materials, ETH Zurich , Vladimir-Prelog-Weg 5, 8093 Zürich, Switzerland
| | - Benjamin Zelenay
- Laboratory of Polymer Chemistry, Department of Materials, ETH Zurich , Vladimir-Prelog-Weg 5, 8093 Zürich, Switzerland
| | - Zhikun Zheng
- Laboratory of Polymer Chemistry, Department of Materials, ETH Zurich , Vladimir-Prelog-Weg 5, 8093 Zürich, Switzerland
| | - Andreas Borgschulte
- Empa, Swiss Federal Laboratories for Materials Science and Technology, Advanced Analytical Technologies, Überlandstrasse 129, 8600 Dübendorf, Switzerland
| | - Max Döbeli
- Ion Beam Physics HPK H32, ETH Zurich , Otto-Stern-Weg 5, 8093 Zurich, Switzerland
| | - Wasim Abuillan
- Physical Chemistry of Biosystems, Institute of Physical Chemistry, University of Heidelberg , 69120 Heidelberg, Germany
| | - Oleg V Konovalov
- European Synchrotron Radiation Facility (ESRF), CS 40220, 38043 Grenoble Cedex 9, France
| | - Motomu Tanaka
- Physical Chemistry of Biosystems, Institute of Physical Chemistry, University of Heidelberg , 69120 Heidelberg, Germany
- Institute for Integrated Cell-Material Sciences (iCeMS), Kyoto University , Kyoto 606-8501, Japan
| | - A Dieter Schlüter
- Laboratory of Polymer Chemistry, Department of Materials, ETH Zurich , Vladimir-Prelog-Weg 5, 8093 Zürich, Switzerland
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Narayanan T, Wacklin H, Konovalov O, Lund R. Recent applications of synchrotron radiation and neutrons in the study of soft matter. CRYSTALLOGR REV 2017. [DOI: 10.1080/0889311x.2016.1277212] [Citation(s) in RCA: 45] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
| | - Hanna Wacklin
- European Spallation Source ERIC, Lund, Sweden
- Physical Chemistry, Lund University, Lund, Sweden
| | | | - Reidar Lund
- Department of Chemistry, University of Oslo, Blindern, Oslo, Norway
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