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Li L, Ji J, Song F, Hu J. Intercellular Receptor-ligand Binding: Effect of Protein-membrane Interaction. J Mol Biol 2023; 435:167787. [PMID: 35952805 DOI: 10.1016/j.jmb.2022.167787] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Revised: 08/03/2022] [Accepted: 08/04/2022] [Indexed: 02/04/2023]
Abstract
Gaining insights into the intercellular receptor-ligand binding is of great importance for understanding numerous physiological and pathological processes, and stimulating new strategies in drug design and discovery. In contrast to the in vitro protein interaction in solution, the anchored receptor and ligand molecules interact with membrane in situ, which affects the intercellular receptor-ligand binding. Here, we review theoretical, simulation and experimental works regarding the regulatory effects of protein-membrane interactions on intercellular receptor-ligand binding mainly from the following aspects: membrane fluctuations, membrane curvature, glycocalyx, and lipid raft. In addition, we discuss biomedical significances and possible research directions to advance the field and highlight the importance of understanding of coupling effects of these factors in pharmaceutical development.
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Affiliation(s)
- Long Li
- Kuang Yaming Honors School and Institute for Brain Sciences, Nanjing University, 210023 Nanjing, China; State Key Laboratory of Nonlinear Mechanics and Beijing Key Laboratory of Engineered Construction and Mechanobiology, Institute of Mechanics, Chinese Academy of Sciences, 100190 Beijing, China
| | - Jing Ji
- Key Laboratory of Biomechanics and Mechanobiology (Beihang University), Ministry of Education Beijing Advanced Innovation Center for Biomedical Engineering School of Biological Science and Medical Engineering, Beihang University, Beijing 100083, China.
| | - Fan Song
- State Key Laboratory of Nonlinear Mechanics and Beijing Key Laboratory of Engineered Construction and Mechanobiology, Institute of Mechanics, Chinese Academy of Sciences, 100190 Beijing, China; School of Engineering Science, University of Chinese Academy of Sciences, 100049 Beijing, China
| | - Jinglei Hu
- Kuang Yaming Honors School and Institute for Brain Sciences, Nanjing University, 210023 Nanjing, China.
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2
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An C, Wang X, Song F, Hu J, Li L. Insights into intercellular receptor-ligand binding kinetics in cell communication. Front Bioeng Biotechnol 2022; 10:953353. [PMID: 35837553 PMCID: PMC9273785 DOI: 10.3389/fbioe.2022.953353] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Accepted: 06/09/2022] [Indexed: 01/14/2023] Open
Abstract
Cell-cell communication is crucial for cells to sense, respond and adapt to environmental cues and stimuli. The intercellular communication process, which involves multiple length scales, is mediated by the specific binding of membrane-anchored receptors and ligands. Gaining insight into two-dimensional receptor-ligand binding kinetics is of great significance for understanding numerous physiological and pathological processes, and stimulating new strategies in drug design and discovery. To this end, extensive studies have been performed to illuminate the underlying mechanisms that control intercellular receptor-ligand binding kinetics via experiment, theoretical analysis and numerical simulation. It has been well established that the cellular microenvironment where the receptor-ligand interaction occurs plays a vital role. In this review, we focus on the advances regarding the regulatory effects of three factors including 1) protein-membrane interaction, 2) biomechanical force, and 3) bioelectric microenvironment to summarize the relevant experimental observations, underlying mechanisms, as well as their biomedical significances and applications. Meanwhile, we introduce modeling methods together with experiment technologies developed for dealing with issues at different scales. We also outline future directions to advance the field and highlight that building up systematic understandings for the coupling effects of these regulatory factors can greatly help pharmaceutical development.
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Affiliation(s)
- Chenyi An
- School of Biology and Engineering, Guizhou Medical University, Guiyang, China
- Department of Cell Biology and Department of Cardiology of the Second Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou, China
| | - Xiaohuan Wang
- Department of Rehabilitation Medicine, Peking University Third Hospital, Beijing, China
| | - Fan Song
- State Key Laboratory of Nonlinear Mechanics and Beijing Key Laboratory of Engineered Construction and Mechanobiology, Institute of Mechanics, Chinese Academy of Sciences, Beijing, China
- School of Engineering Science, University of Chinese Academy of Sciences, Beijing, China
| | - Jinglei Hu
- Kuang Yaming Honors School and Institute for Brain Sciences, Nanjing University, Nanjing, China
| | - Long Li
- State Key Laboratory of Nonlinear Mechanics and Beijing Key Laboratory of Engineered Construction and Mechanobiology, Institute of Mechanics, Chinese Academy of Sciences, Beijing, China
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3
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Souissi M, Pernier J, Rossier O, Giannone G, Le Clainche C, Helfer E, Sengupta K. Integrin-Functionalised Giant Unilamellar Vesicles via Gel-Assisted Formation: Good Practices and Pitfalls. Int J Mol Sci 2021; 22:6335. [PMID: 34199292 PMCID: PMC8231826 DOI: 10.3390/ijms22126335] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2021] [Revised: 05/26/2021] [Accepted: 06/08/2021] [Indexed: 01/16/2023] Open
Abstract
Giant unilamellar vesicles (GUV) are powerful tools to explore physics and biochemistry of the cell membrane in controlled conditions. For example, GUVs were extensively used to probe cell adhesion, but often using non-physiological linkers, due to the difficulty of incorporating transmembrane adhesion proteins into model membranes. Here we describe a new protocol for making GUVs incorporating the transmembrane protein integrin using gel-assisted swelling. We report an optimised protocol, enumerating the pitfalls encountered and precautions to be taken to maintain the robustness of the protocol. We characterise intermediate steps of small proteoliposome formation and the final formed GUVs. We show that the integrin molecules are successfully incorporated and are functional.
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Affiliation(s)
- Mariem Souissi
- Aix Marseille Univ, CNRS, Centre Interdisciplinaire de Nanoscience de Marseille (CINAM), Turing Centre for Living Systems, 13009 Marseille, France;
| | - Julien Pernier
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198 Gif-sur-Yvette, France; (J.P.); (C.L.C.)
| | - Olivier Rossier
- Univ. Bordeaux, CNRS, Interdisciplinary Institute for Neuroscience, IINS, UMR 5297, 33000 Bordeaux, France; (O.R.); (G.G.)
| | - Gregory Giannone
- Univ. Bordeaux, CNRS, Interdisciplinary Institute for Neuroscience, IINS, UMR 5297, 33000 Bordeaux, France; (O.R.); (G.G.)
| | - Christophe Le Clainche
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198 Gif-sur-Yvette, France; (J.P.); (C.L.C.)
| | - Emmanuèle Helfer
- Aix Marseille Univ, CNRS, Centre Interdisciplinaire de Nanoscience de Marseille (CINAM), Turing Centre for Living Systems, 13009 Marseille, France;
| | - Kheya Sengupta
- Aix Marseille Univ, CNRS, Centre Interdisciplinaire de Nanoscience de Marseille (CINAM), Turing Centre for Living Systems, 13009 Marseille, France;
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4
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Blackwell R, Hemmerle A, Baer A, Späth M, Peukert W, Parsons D, Sengupta K, Smith AS. On the control of dispersion interactions between biological membranes and protein coated biointerfaces. J Colloid Interface Sci 2021; 598:464-473. [PMID: 33951546 DOI: 10.1016/j.jcis.2021.02.078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2020] [Revised: 02/03/2021] [Accepted: 02/17/2021] [Indexed: 11/28/2022]
Abstract
HYPOTHESIS Interaction of cellular membranes with biointerfaces is of vital importance for a number of medical devices and implants. Adhesiveness of these surfaces and cells is often regulated by depositing a layer of bovine serum albumin (BSA) or other protein coatings. However, anomalously large separations between phospholipid membranes and the biointerfaces in various conditions and buffers have been observed, which could not be understood using available theoretical arguments. METHODS Using the Lifshitz theory, we here evaluate the distance-dependent Hamaker coefficient describing the dispersion interaction between a biointerface and a membrane to understand the relative positioning of two surfaces. Our theoretical modeling is supported by experiments where the biointerface is represented by a glass substrate with deposited BSA and protein layers. These biointerfaces are allowed to interact with giant unilamellar vesicles decorated with polyethylene glycol (PEG) using PEG lipids to mimic cellular membranes and their pericellular coat. RESULTS We demonstrate that careful treatment of the van der Waals interactions is critical for explaining the lack of adhesiveness of the membranes with protein-decorated biointerfaces. We show that BSA alone indeed passivates the glass, but depositing an additional protein layer on the surface BSA, or producing multiple layers of proteins and BSA results in repulsive dispersion forces responsible for 100 nm large equilibrium separations between the two surfaces.
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Affiliation(s)
- Robert Blackwell
- PULS Group, Department of Physics and Interdisciplinary Center for Nanostructured Films, Friedrich-Alexander-Universität Erlangen-Nürnberg, IZNF, Cauerstrasse 3, 91058 Erlangen, Germany.
| | - Arnaud Hemmerle
- Aix-Marseille Université, Centre Interdisciplinaire de Nanosciences de Marseille, CNRS, UMR 7325, Campus de Luminy, 13288 Marseille cedex 9, France.
| | - Andreas Baer
- PULS Group, Department of Physics and Interdisciplinary Center for Nanostructured Films, Friedrich-Alexander-Universität Erlangen-Nürnberg, IZNF, Cauerstrasse 3, 91058 Erlangen, Germany.
| | - Matthias Späth
- PULS Group, Department of Physics and Interdisciplinary Center for Nanostructured Films, Friedrich-Alexander-Universität Erlangen-Nürnberg, IZNF, Cauerstrasse 3, 91058 Erlangen, Germany
| | - Wolfgang Peukert
- Institute of Particle Technology, Interdisciplinary Center for Functional Particle Systems, Friedrich-Alexander-Universität Erlangen-Nürnberg, Haberstrasse 9a, 91058 Erlangen, Germany.
| | - Drew Parsons
- Department of Chemical and Geological Sciences, University of Cagliari, Cittadella Universitaria, 09042 Monserrato, CA, Italy; Discipline of Physics, Chemistry and Mathematics, College of Science Health Engineering and Education, Murdoch University, Murdoch, 6150 WA, Australia.
| | - Kheya Sengupta
- Aix-Marseille Université, Centre Interdisciplinaire de Nanosciences de Marseille, CNRS, UMR 7325, Campus de Luminy, 13288 Marseille cedex 9, France.
| | - Ana-Sunčana Smith
- PULS Group, Department of Physics and Interdisciplinary Center for Nanostructured Films, Friedrich-Alexander-Universität Erlangen-Nürnberg, IZNF, Cauerstrasse 3, 91058 Erlangen, Germany; Division of Physical Chemistry, Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia.
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5
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Statistical Mechanics of an Elastically Pinned Membrane: Equilibrium Dynamics and Power Spectrum. Biophys J 2019; 117:542-552. [PMID: 31349987 DOI: 10.1016/j.bpj.2019.06.036] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2018] [Revised: 06/22/2019] [Accepted: 06/26/2019] [Indexed: 11/21/2022] Open
Abstract
In biological settings, membranes typically interact locally with other membranes: the extracellular matrix in the exterior or internal cellular structures such as the cytoskeleton, locally pinning the membrane. Characterizing the dynamical properties of such interactions presents a difficult task. Significant progress has been achieved through simulations and experiments, yet analytical progress in modeling pinned membranes has been impeded by the complexity of governing equations. Here, we circumvent these difficulties by calculating analytically the time-dependent Green's function of the operator governing the dynamics of an elastically pinned membrane in a hydrodynamic surrounding and subject to external forces. This enables us to calculate the equilibrium power spectral density for an overdamped membrane pinned by an elastic, permanently attached spring subject to thermal excitations. By considering the effects of the finite experimental resolution on the measured spectra, we show that the elasticity of the pinning can be extracted from the experimentally measured spectrum. Membrane fluctuations can thus be used as a tool to probe mechanical properties of the underlying structures. Such a tool may be particularly relevant in the context of cell mechanics, in which the elasticity of the membrane's attachment to the cytoskeleton could be measured.
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6
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Irajizad E, Agrawal A. Vesicle adhesion reveals novel universal relationships for biophysical characterization. Biomech Model Mechanobiol 2017; 17:103-109. [DOI: 10.1007/s10237-017-0947-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2016] [Accepted: 07/29/2017] [Indexed: 10/19/2022]
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Marzban B, Yuan H. The Effect of Thermal Fluctuation on the Receptor-Mediated Adhesion of a Cell Membrane to an Elastic Substrate. MEMBRANES 2017; 7:E24. [PMID: 28448443 PMCID: PMC5489858 DOI: 10.3390/membranes7020024] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/14/2017] [Revised: 04/14/2017] [Accepted: 04/25/2017] [Indexed: 12/22/2022]
Abstract
Mechanics of the bilayer membrane play an important role in many biological and bioengineering problems such as cell-substrate and cell-nanomaterial interactions. In this work, we study the effect of thermal fluctuation and the substrate elasticity on the cell membrane-substrate adhesion. We model the adhesion of a fluctuating membrane on an elastic substrate as a two-step reaction comprised of the out-of-plane membrane fluctuation and the receptor-ligand binding. The equilibrium closed bond ratio as a function of substrate rigidity was computed by developing a coupled Fourier space Brownian dynamics and Monte Carlo method. The simulation results show that there exists a crossover value of the substrate rigidity at which the closed bond ratio is maximal.
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Affiliation(s)
- Bahador Marzban
- Department of Mechanical, Industrial & Systems Engineering, University of Rhode Island, Kingston, RI 02881, USA.
| | - Hongyan Yuan
- Department of Mechanical, Industrial & Systems Engineering, University of Rhode Island, Kingston, RI 02881, USA.
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8
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Weikl TR, Hu J, Xu GK, Lipowsky R. Binding equilibrium and kinetics of membrane-anchored receptors and ligands in cell adhesion: Insights from computational model systems and theory. Cell Adh Migr 2016; 10:576-589. [PMID: 27294442 PMCID: PMC5079412 DOI: 10.1080/19336918.2016.1180487] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2016] [Accepted: 04/13/2016] [Indexed: 10/21/2022] Open
Abstract
The adhesion of cell membranes is mediated by the binding of membrane-anchored receptor and ligand proteins. In this article, we review recent results from simulations and theory that lead to novel insights on how the binding equilibrium and kinetics of these proteins is affected by the membranes and by the membrane anchoring and molecular properties of the proteins. Simulations and theory both indicate that the binding equilibrium constant [Formula: see text] and the on- and off-rate constants of anchored receptors and ligands in their 2-dimensional (2D) membrane environment strongly depend on the membrane roughness from thermally excited shape fluctuations on nanoscales. Recent theory corroborated by simulations provides a general relation between [Formula: see text] and the binding constant [Formula: see text] of soluble variants of the receptors and ligands that lack the membrane anchors and are free to diffuse in 3 dimensions (3D).
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Affiliation(s)
- Thomas R. Weikl
- Max Planck Institute of Colloids and Interfaces, Department of Theory and Bio-Systems, Potsdam, Germany
| | - Jinglei Hu
- Max Planck Institute of Colloids and Interfaces, Department of Theory and Bio-Systems, Potsdam, Germany
- Kuang Yaming Honors School, Nanjing University, Nanjing, China
| | - Guang-Kui Xu
- Max Planck Institute of Colloids and Interfaces, Department of Theory and Bio-Systems, Potsdam, Germany
- International Center for Applied Mechanics, State Key Laboratory for Strength and Vibration of Mechanical Structures, Xi'an Jiaotong University, Xi'an, China
| | - Reinhard Lipowsky
- Max Planck Institute of Colloids and Interfaces, Department of Theory and Bio-Systems, Potsdam, Germany
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9
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Le Goff T, Politi P, Pierre-Louis O. Transition to coarsening for confined one-dimensional interfaces with bending rigidity. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 92:022918. [PMID: 26382487 DOI: 10.1103/physreve.92.022918] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2015] [Indexed: 06/05/2023]
Abstract
We discuss the nonlinear dynamics and fluctuations of interfaces with bending rigidity under the competing attractions of two walls with arbitrary permeabilities. This system mimics the dynamics of confined membranes. We use a two-dimensional hydrodynamic model, where membranes are effectively one-dimensional objects. In a previous work [T. Le Goff et al., Phys. Rev. E 90, 032114 (2014)], we have shown that this model predicts frozen states caused by bending rigidity-induced oscillatory interactions between kinks (or domain walls). We here demonstrate that in the presence of tension, potential asymmetry, or thermal noise, there is a finite threshold above which frozen states disappear, and perpetual coarsening is restored. Depending on the driving force, the transition to coarsening exhibits different scenarios. First, for membranes under tension, small tensions can only lead to transient coarsening or partial disordering, while above a finite threshold, membrane oscillations disappear and perpetual coarsening is found. Second, potential asymmetry is relevant in the nonconserved case only, i.e., for permeable walls, where it induces a drift force on the kinks, leading to a fast coarsening process via kink-antikink annihilation. However, below some threshold, the drift force can be balanced by the oscillatory interactions between kinks, and frozen adhesion patches can still be observed. Finally, at long times, noise restores coarsening with standard exponents depending on the permeability of the walls. However, the typical time for the appearance of coarsening exhibits an Arrhenius form. As a consequence, a finite noise amplitude is needed in order to observe coarsening in observable time.
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Affiliation(s)
- Thomas Le Goff
- Institut Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon 69622 Villeurbanne, France
| | - Paolo Politi
- Istituto dei Sistemi Complessi, Consiglio Nazionale delle Ricerche, Via Madonna del Piano 10, 50019 Sesto Fiorentino, Italy
- INFN Sezione di Firenze, via G. Sansone 1, 50019 Sesto Fiorentino, Italy
| | - Olivier Pierre-Louis
- Institut Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon 69622 Villeurbanne, France
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10
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Dahl JB, Lin JMG, Muller SJ, Kumar S. Microfluidic Strategies for Understanding the Mechanics of Cells and Cell-Mimetic Systems. Annu Rev Chem Biomol Eng 2015; 6:293-317. [PMID: 26134738 PMCID: PMC5217707 DOI: 10.1146/annurev-chembioeng-061114-123407] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Microfluidic systems are attracting increasing interest for the high-throughput measurement of cellular biophysical properties and for the creation of engineered cellular microenvironments. Here we review recent applications of microfluidic technologies to the mechanics of living cells and synthetic cell-mimetic systems. We begin by discussing the use of microfluidic devices to dissect the mechanics of cellular mimics, such as capsules and vesicles. We then explore applications to circulating cells, including erythrocytes and other normal blood cells, and rare populations with potential disease diagnostic value, such as circulating tumor cells. We conclude by discussing how microfluidic devices have been used to investigate the mechanics, chemotaxis, and invasive migration of adherent cells. In these ways, microfluidic technologies represent an increasingly important toolbox for investigating cellular mechanics and motility at high throughput and in a format that lends itself to clinical translation.
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Affiliation(s)
- Joanna B. Dahl
- Department of Chemical and Biomolecular Engineering, UC-Berkeley, Berkeley, CA 94720
| | - Jung-Ming G. Lin
- Department of Bioengineering, UC-Berkeley, Berkeley, CA 94720
- The UC Berkeley/UCSF Graduate Program in Bioengineering, Berkeley, CA 94720
| | - Susan J. Muller
- Department of Chemical and Biomolecular Engineering, UC-Berkeley, Berkeley, CA 94720
| | - Sanjay Kumar
- Department of Bioengineering, UC-Berkeley, Berkeley, CA 94720
- The UC Berkeley/UCSF Graduate Program in Bioengineering, Berkeley, CA 94720
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11
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Bihr T, Fenz S, Sackmann E, Merkel R, Seifert U, Sengupta K, Smith AS. Association rates of membrane-coupled cell adhesion molecules. Biophys J 2014; 107:L33-6. [PMID: 25468354 PMCID: PMC4255260 DOI: 10.1016/j.bpj.2014.10.033] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2014] [Revised: 10/13/2014] [Accepted: 10/24/2014] [Indexed: 11/20/2022] Open
Abstract
Thus far, understanding how the confined cellular environment affects the lifetime of bonds, as well as the extraction of complexation rates, has been a major challenge in studies of cell adhesion. Based on a theoretical description of the growth curves of adhesion domains, we present a new (to our knowledge) method to measure the association rate k(on) of ligand-receptor pairs incorporated into lipid membranes. As a proof of principle, we apply this method to several systems. We find that the k(on) for the interaction of biotin with neutravidin is larger than that for integrin binding to RGD or sialyl Lewis(x) to E-selectin. Furthermore, we find k(on) to be enhanced by membrane fluctuations that increase the probability for encounters between the binders. The opposite effect on k(on) could be attributed to the presence of repulsive polymers that mimic the glycocalyx, which points to two potential mechanisms for controlling the speed of protein complexation during the cell recognition process.
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Affiliation(s)
- Timo Bihr
- Institut für Theoretische Physik and Cluster of Excellence Engineering of Advanced Materials, Friedrich-Alexander-Universität, Erlangen, Germany; II. Institut für Theoretische Physik, Universität Stuttgart, Stuttgart, Germany
| | - Susanne Fenz
- Institute of Complex Systems 7: Biomechanics Forschungszentrum Jülich, Jülich, Germany; Department of Cell and Developmental Biology, Theodor-Boveri-Institute, Universität Würzburg, Würzburg, Germany
| | - Erich Sackmann
- Physics Department, Biophysics E22, Technische Universität München, München, Germany
| | - Rudolf Merkel
- Institute of Complex Systems 7: Biomechanics Forschungszentrum Jülich, Jülich, Germany
| | - Udo Seifert
- II. Institut für Theoretische Physik, Universität Stuttgart, Stuttgart, Germany
| | - Kheya Sengupta
- Aix-Marseille Université, CNRS, CINaM UMR 7325, Marseille, France
| | - Ana-Sunčana Smith
- Institut für Theoretische Physik and Cluster of Excellence Engineering of Advanced Materials, Friedrich-Alexander-Universität, Erlangen, Germany; Institute Ruđer Bošković, Division of Physical Chemistry, Zagreb, Croatia.
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12
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Le Goff T, Politi P, Pierre-Louis O. Frozen states and order-disorder transition in the dynamics of confined membranes. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 90:032114. [PMID: 25314402 DOI: 10.1103/physreve.90.032114] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2013] [Indexed: 06/04/2023]
Abstract
The adhesion dynamics of a membrane confined between two permeable walls is studied using a two-dimensional hydrodynamic model. The membrane morphology decomposes into adhesion patches on the upper and the lower walls and obeys a nonlinear evolution equation that resembles that of phase-separation dynamics, which is known to lead to coarsening, i.e., to the endless growth of the adhesion patches. However, due to the membrane bending rigidity, the system evolves toward a frozen state without coarsening. This frozen state exhibits an order-disorder transition when increasing the permeability of the walls.
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Affiliation(s)
- Thomas Le Goff
- Institut Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon, 69622 Villeurbanne, France
| | - Paolo Politi
- Istituto dei Sistemi Complessi, Consiglio Nazionale delle Ricerche, Via Madonna del Piano 10, 50019 Sesto Fiorentino, Italy and INFN Sezione di Firenze, via G. Sansone 1, 50019 Sesto Fiorentino, Italy
| | - Olivier Pierre-Louis
- Institut Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon, 69622 Villeurbanne, France
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13
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Sackmann E, Smith AS. Physics of cell adhesion: some lessons from cell-mimetic systems. SOFT MATTER 2014; 10:1644-59. [PMID: 24651316 PMCID: PMC4028615 DOI: 10.1039/c3sm51910d] [Citation(s) in RCA: 85] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
Cell adhesion is a paradigm of the ubiquitous interplay of cell signalling, modulation of material properties and biological functions of cells. It is controlled by competition of short range attractive forces, medium range repellant forces and the elastic stresses associated with local and global deformation of the composite cell envelopes. We review the basic physical rules governing the physics of cell adhesion learned by studying cell-mimetic systems and demonstrate the importance of these rules in the context of cellular systems. We review how adhesion induced micro-domains couple to the intracellular actin and microtubule networks allowing cells to generate strong forces with a minimum of attractive cell adhesion molecules (CAMs) and to manipulate other cells through filopodia over micrometer distances. The adhesion strength can be adapted to external force fluctuations within seconds by varying the density of attractive and repellant CAMs through exocytosis and endocytosis or protease-mediated dismantling of the CAM-cytoskeleton link. Adhesion domains form local end global biochemical reaction centres enabling the control of enzymes. Actin-microtubule crosstalk at adhesion foci facilitates the mechanical stabilization of polarized cell shapes. Axon growth in tissue is guided by attractive and repulsive clues controlled by antagonistic signalling pathways.
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Affiliation(s)
- Erich Sackmann
- Physics Department Technical University Munich, Germany
- Department of Physics, Ludwig-Maximillian University, Munich, Germany
| | - Ana-Sunčana Smith
- Institute for Theoretical Physics, Friedrich Alexander University Erlangen-Nürnberg, Erlangen, Germany
- Institute Rud̷er Bošković, Zagreb, Croatia.
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14
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Li Q, Yan TT, Niu S, Zhao YT, Meng XB, Zhao ZH, Li ZJ. Synthesis of a series of multivalent homo-, and heteroglycosides and their anti-adhesion activities. Carbohydr Res 2013; 379:78-94. [DOI: 10.1016/j.carres.2013.06.011] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2013] [Revised: 06/13/2013] [Accepted: 06/14/2013] [Indexed: 11/25/2022]
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15
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Bihr T, Seifert U, Smith AS. Nucleation of ligand-receptor domains in membrane adhesion. PHYSICAL REVIEW LETTERS 2012; 109:258101. [PMID: 23368503 DOI: 10.1103/physrevlett.109.258101] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2012] [Indexed: 06/01/2023]
Abstract
We present a comprehensive model for the nucleation of domains in membrane adhesion. We determine the critical number of bonds in a nucleus and calculate the probability distribution of nucleation time from a discrete master equation. The latter is characterized by only four effective rates, which account for cooperative effects between bonds. We validate our model by finding excellent agreement with extensive Langevin simulations. In the range of parameters typical for cell adhesion, we find the critical number of bonds to be small. Furthermore, we find a characteristic separation between the bonds at which nucleation is particularly fast, pointing to potential regulatory mechanisms that could be used to control the cell recognition processes.
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Affiliation(s)
- Timo Bihr
- II. Institut für Theoretische Physik, Universität Stuttgart, Pfaffenwaldring 57, 70550 Stuttgart, Germany
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Sarmento M, Prieto M, Fernandes F. Reorganization of lipid domain distribution in giant unilamellar vesicles upon immobilization with different membrane tethers. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2012; 1818:2605-15. [DOI: 10.1016/j.bbamem.2012.05.028] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2012] [Revised: 05/22/2012] [Accepted: 05/25/2012] [Indexed: 10/28/2022]
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17
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Feracci H, Gutierrez BS, Hempel W, Gil IS. Organic Nanoparticles. NANOBIOTECHNOLOGY - INORGANIC NANOPARTICLES VS ORGANIC NANOPARTICLES 2012. [DOI: 10.1016/b978-0-12-415769-9.00008-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
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18
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Fenz SF, Bihr T, Merkel R, Seifert U, Sengupta K, Smith AS. Switching from ultraweak to strong adhesion. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2011; 23:2622-6. [PMID: 21495083 DOI: 10.1002/adma.201004097] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2010] [Indexed: 05/13/2023]
Affiliation(s)
- Susanne F Fenz
- Institute of Complex Systems 7: Biomechanics Forschungszentrum Jülich GmbH, 52425 Jülich, Germany
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19
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Abstract
Tethered lipid membranes or immobilized lipid vesicles are frequently used as biomimetic systems. In this article, the authors presented a suitable method for efficient immobilization of lipid vesicles onto a broad range of surfaces, enabling analysis by quantitative methods even under rigid, mechanical conditions-bare surfaces such as hydrophilic glass surfaces as well as hydrophobic polymer slides or metal surfaces such as gold. The immobilization of vesicles was based on the electrostatic interaction of zwitterionic or negatively charged lipid vesicles with two types of cationic chemically modified bovine serum albumin (cBSA) blood plasma proteins (cBSA-113 and cBSA-147). Quantitative analysis of protein adsorption was performed as the cBSA coatings were characterized by atomic force microscopy, surface zeta potential measurement, fluorescence microscopy, and surface plasmon spectroscopy, revealing a maximal surface coverage 270-280 ng/cm(2) for 0.02 mg/ml cBSA on gold. Small unilamellar vesicles as well as giant unilamellar vesicles (GUVs) were readily immobilized (∼15 min) on cBSA coated surfaces. GUVs with 5-10 mol% negatively charged 1,2,-dipalmitoyl-sn-glycero-3-phosphoglycerol remained stable in liquid for at least 5 weeks.
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20
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Limozin L, Sengupta K. Quantitative reflection interference contrast microscopy (RICM) in soft matter and cell adhesion. Chemphyschem 2010; 10:2752-68. [PMID: 19816893 DOI: 10.1002/cphc.200900601] [Citation(s) in RCA: 148] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Adhesion can be quantified by measuring the distance between the interacting surfaces. Reflection interference contrast microscopy (RICM), with its ability to measure inter-surface distances under water with nanometric precision and milliseconds time resolution, is ideally suited to studying the dynamics of adhesion in soft systems. Recent technical developments, which include innovative image analysis and the use of multi-coloured illumination, have led to renewed interest in this technique. Unambiguous quantitative measurements have been achieved for colloidal beads and model membranes, thus revealing new insights and applications. Quantification of data from cells shows exciting prospects. Herein, we review the basic principles and recent developments of RICM applied to studies of dynamical adhesion processes in soft matter and cell biology and provide practical hints to potential users.
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Affiliation(s)
- Laurent Limozin
- Adhesion and Inflammation, CNRS UMR 6212, Inserm U600, Aix-Marseille University, Luminy, Marseille, France.
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Theodoly O, Huang ZH, Valignat MP. New modeling of reflection interference contrast microscopy including polarization and numerical aperture effects: application to nanometric distance measurements and object profile reconstruction. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2010; 26:1940-8. [PMID: 19947618 DOI: 10.1021/la902504y] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
We have developed a new and improved optical model of reflection interference contrast microscopy (RICM) to determine with a precision of a few nanometers the absolute thickness h of thin films on a flat surface in immersed conditions. The model takes into account multiple reflections between a planar surface and a multistratified object, finite aperture illumination (INA), and, for the first time, the polarization of light. RICM intensity I is typically oscillating with h. We introduce a new normalization procedure that uses the intensity extrema of the same oscillation order for both experimental and theoretical intensity values and permits us to avoid significant error in the absolute height determination, especially at high INA. We also show how the problem of solution degeneracy can be solved by taking pictures at two different INA values. The model is applied to filled polystyrene beads and giant unilamellar vesicles of radius 10-40 microm sitting on a glass substrate. The RICM profiles I(h) can be fitted for up to two to three oscillation orders, and extrema positions are correct for up to five to seven oscillation orders. The precision of the absolute distance and of the shape of objects near a substrate is about 5 nm in a range from 0 to 500 nm, even under large numerical aperture conditions. The method is especially valuable for dynamic RICM experiments and with living cells where large illumination apertures are required.
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Affiliation(s)
- O Theodoly
- Laboratoire Adhésion et Inflammation, INSERM U600, CNRS UMR 6212, Université de la Méditerranée, 163 Avenue de Luminy, Marseille F-13009, France
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22
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Paszek MJ, Boettiger D, Weaver VM, Hammer DA. Integrin clustering is driven by mechanical resistance from the glycocalyx and the substrate. PLoS Comput Biol 2009; 5:e1000604. [PMID: 20011123 PMCID: PMC2782178 DOI: 10.1371/journal.pcbi.1000604] [Citation(s) in RCA: 174] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2009] [Accepted: 11/09/2009] [Indexed: 01/16/2023] Open
Abstract
Integrins have emerged as key sensory molecules that translate chemical and physical cues from the extracellular matrix (ECM) into biochemical signals that regulate cell behavior. Integrins function by clustering into adhesion plaques, but the molecular mechanisms that drive integrin clustering in response to interaction with the ECM remain unclear. To explore how deformations in the cell-ECM interface influence integrin clustering, we developed a spatial-temporal simulation that integrates the micro-mechanics of the cell, glycocalyx, and ECM with a simple chemical model of integrin activation and ligand interaction. Due to mechanical coupling, we find that integrin-ligand interactions are highly cooperative, and this cooperativity is sufficient to drive integrin clustering even in the absence of cytoskeletal crosslinking or homotypic integrin-integrin interactions. The glycocalyx largely mediates this cooperativity and hence may be a key regulator of integrin function. Remarkably, integrin clustering in the model is naturally responsive to the chemical and physical properties of the ECM, including ligand density, matrix rigidity, and the chemical affinity of ligand for receptor. Consistent with experimental observations, we find that integrin clustering is robust on rigid substrates with high ligand density, but is impaired on substrates that are highly compliant or have low ligand density. We thus demonstrate how integrins themselves could function as sensory molecules that begin sensing matrix properties even before large multi-molecular adhesion complexes are assembled. Critical cell decisions, including whether to live, proliferate, or assemble into tissue structures, are directed by cues from the extracellular matrix, the external protein scaffold that surrounds cells. Integrin receptors on the cell surface bind to the extracellular matrix and cluster into complexes that translate matrix cues into the set of instructions a cell follows. Using a newly developed model of the cell-matrix interface, in this work we detail a simple yet efficient mechanism by which integrins could “sense” important matrix properties, including chemical composition and mechanical stiffness, and cluster appropriately. This mechanism relies on mechanical resistance to integrin-matrix interaction provided by the glycocalyx, the slimy sugar and protein coating on the cell, as well as the stiffness of the matrix and the cell itself. In general, the resistance alters integrin-ligand reaction rates, such that integrin clustering is favored for many physiologically relevant conditions. Interestingly, the mechanical properties of the cell and ECM are altered in many prevalent diseases, such as cancer, and our work suggests how these mechanical perturbations might adversely influence integrin function.
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Affiliation(s)
- Matthew J. Paszek
- Department of Bioengineering, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- Institute for Medicine and Engineering, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- Center for Bioengineering and Tissue Regeneration, Department of Surgery, University of California, San Francisco, San Francisco, California, United States of America
| | - David Boettiger
- Institute for Medicine and Engineering, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- Department of Microbiology, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- Department of Pharmacology, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
| | - Valerie M. Weaver
- Center for Bioengineering and Tissue Regeneration, Department of Surgery, University of California, San Francisco, San Francisco, California, United States of America
- Department of Anatomy, University of California, San Francisco, San Francisco, California, United States of America
- Department of Bioengineering and Therapeutic Sciences, Institute for Regenerative Medicine and UCSF Comprehensive Cancer Center, University of California, San Francisco, San Francisco, California, United States of America
| | - Daniel A. Hammer
- Department of Bioengineering, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- Department of Chemical and Biomolecular Engineering, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- Institute for Medicine and Engineering, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- * E-mail:
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Streicher P, Nassoy P, Bärmann M, Dif A, Marchi-Artzner V, Brochard-Wyart F, Spatz J, Bassereau P. Integrin reconstituted in GUVs: a biomimetic system to study initial steps of cell spreading. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2009; 1788:2291-300. [PMID: 19665445 DOI: 10.1016/j.bbamem.2009.07.025] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2009] [Revised: 07/10/2009] [Accepted: 07/27/2009] [Indexed: 10/20/2022]
Abstract
A novel in vitro membrane system mimicking the first steps of integrin-mediated cell spreading has been developed and characterized. We have reconstituted the transmembrane alpha(IIb)beta(3) integrin into giant unilamellar vesicles (GUVs). The reconstitution process has been validated by analyzing protein incorporation and biological activity by checking the specific interaction of GUVs containing integrin with quantum dots (QD) or surfaces coated with the integrin receptor tri-peptide RGD.(1) The spreading dynamics of integrin-functionalized GUVs onto fibrinogen-coated surfaces has been monitored by Reflection Interference Contrast Microscopy (RICM). Our results are quantitatively consistent with a theoretical model based on a dewetting process coupled to binder diffusion and provide a comprehensive description of the following sequence: i) nucleation and growth of adhesive patches coupled to the diffusion of the adhesive proteins to these adhesive zones ii) fusion of patches and formation of an adhesive ring iii) complete spreading of the GUV by dewetting of the central liquid film from the border to form an adhesive circular patch that is not significantly enriched in integrins, as compared to the unbound membrane. This finding is consistent with the recognized role of the actin cytoskeleton in stabilizing focal complexes and focal adhesions in a cell-extracellular matrix contact. These very large unilamellar integrin-containing vesicles provide a unique artificial system, which could be further developed towards realistic cell mimic and used to study the complexity of integrin-mediated cell spreading.
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Affiliation(s)
- Pia Streicher
- Institut Curie, Centre de Recherche, Université Pierre et Marie Curie, F-75248 Paris, France
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Smith AS, Sackmann E. Progress in mimetic studies of cell adhesion and the mechanosensing. Chemphyschem 2009; 10:66-78. [PMID: 19115325 DOI: 10.1002/cphc.200800683] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Vesicle-substrate adhesion has been studied for over two decades with the motivation to understand and mimic cell adhesion. In recent years, with progress in theoretical modelling, the development of experimental techniques, and improved data-analysis procedures, considerable advances have been made in the understanding of the adhesion process. It is this progress which constitutes the focus of this review.
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Affiliation(s)
- Ana-Suncana Smith
- II. Institut für theoretische Physik, Universität Stuttgart, Pfaffenwaldring 57/III, Stuttgart,D-70550, Germany.
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25
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Reister-Gottfried E, Sengupta K, Lorz B, Sackmann E, Seifert U, Smith AS. Dynamics of specific vesicle-substrate adhesion: from local events to global dynamics. PHYSICAL REVIEW LETTERS 2008; 101:208103. [PMID: 19113383 DOI: 10.1103/physrevlett.101.208103] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2008] [Indexed: 05/27/2023]
Abstract
We present a synergistic combination of simulations and experimental data on the dynamics of membrane adhesion. We show that a change in either the density or the strength of the bonds results in very different dynamics. Such behavior is explained by introducing an effective binding affinity that emerges as a result of the competition between the strength of the chemical bonds and the environment defined by the fluctuating membrane.
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