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An Integrated Pharmacophore/Docking/3D-QSAR Approach to Screening a Large Library of Products in Search of Future Botulinum Neurotoxin A Inhibitors. Int J Mol Sci 2020; 21:ijms21249470. [PMID: 33322848 PMCID: PMC7764241 DOI: 10.3390/ijms21249470] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2020] [Revised: 12/05/2020] [Accepted: 12/08/2020] [Indexed: 12/19/2022] Open
Abstract
Botulinum toxins are neurotoxins produced by Clostridium botulinum. This toxin can be lethal for humans as a cause of botulism; however, in small doses, the same toxin is used to treat different conditions. Even if the therapeutic doses are effective and safe, the adverse reactions could be local and could unmask a subclinical impairment of neuromuscular transmissions. There are not many cases of adverse events in the literature; however, it is possible that sometimes they do not occur as they are transient and, if they do occur, there is no possibility of a cure other than to wait for the pharmacological effect to end. Inhibition of botulinum neurotoxin type A (BoNT/A) effects is a strategy for treating botulism as it can provide an effective post-exposure remedy. In this paper, 13,592,287 compounds were screened through a pharmacophore filter, a 3D-QSAR model, and a virtual screening; then, the compounds with the best affinity were selected. Molecular dynamics simulation studies on the first four compounds predicted to be the most active were conducted to verify that the poses foreseen by the docking were stable. This approach allowed us to identify compounds with a calculated inhibitory activity in the range of 316–500 nM.
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2
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Quinoline and quinolone dimers and their biological activities: An overview. Eur J Med Chem 2019; 161:101-117. [DOI: 10.1016/j.ejmech.2018.10.035] [Citation(s) in RCA: 113] [Impact Index Per Article: 22.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2018] [Revised: 10/10/2018] [Accepted: 10/15/2018] [Indexed: 01/28/2023]
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3
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Affiliation(s)
- Megan Garland
- Cancer
Biology Program, ‡Department of Pathology, §Department of Microbiology and Immunology, and ∥Department of
Chemical and Systems Biology, Stanford University School of Medicine, 300 Pasteur Drive, Stanford, California 94305, United States
| | - Sebastian Loscher
- Cancer
Biology Program, ‡Department of Pathology, §Department of Microbiology and Immunology, and ∥Department of
Chemical and Systems Biology, Stanford University School of Medicine, 300 Pasteur Drive, Stanford, California 94305, United States
| | - Matthew Bogyo
- Cancer
Biology Program, ‡Department of Pathology, §Department of Microbiology and Immunology, and ∥Department of
Chemical and Systems Biology, Stanford University School of Medicine, 300 Pasteur Drive, Stanford, California 94305, United States
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4
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Wang X, Dong Y, Cal M, Kaiser M, Wittlin S, Vennerstrom JL. Antiprotozoal Selectivity of Diimidazoline N-Phenylbenzamides. ACS Infect Dis 2015; 1:135-9. [PMID: 27622464 DOI: 10.1021/id500034v] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
We discovered three diimidazolines with high antiplasmodial selectivity that had IC50 values of 1.9-28 nM against cultured Plasmodium falciparum. We also identified a gem-dimethyl diimidazoline with high antitrypanosomal selectivity that had an IC50 value of 26 nM against cultured Trypanosoma brucei rhodesiense. Two 2-imidazoline heterocycles in a para orientation on a N-phenylbenzamide or similar core structure were required for high antiprotozoal activity. Ring expansion of the imidazoline as well as heterocyclic variants with pKa values of <7 all decreased activity significantly.
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Affiliation(s)
- Xiaofang Wang
- College
of Pharmacy, 986025 Nebraska Medical Center, University of Nebraska Medical Center, Omaha, Nebraska 68198-6025, United States
| | - Yuxiang Dong
- College
of Pharmacy, 986025 Nebraska Medical Center, University of Nebraska Medical Center, Omaha, Nebraska 68198-6025, United States
| | - Monica Cal
- Swiss Tropical and Public Health Institute, Socinstrasse 57, CH-4002 Basel, Switzerland
- University of Basel, CH-4003 Basel, Switzerland
| | - Marcel Kaiser
- Swiss Tropical and Public Health Institute, Socinstrasse 57, CH-4002 Basel, Switzerland
- University of Basel, CH-4003 Basel, Switzerland
| | - Sergio Wittlin
- Swiss Tropical and Public Health Institute, Socinstrasse 57, CH-4002 Basel, Switzerland
- University of Basel, CH-4003 Basel, Switzerland
| | - Jonathan L. Vennerstrom
- College
of Pharmacy, 986025 Nebraska Medical Center, University of Nebraska Medical Center, Omaha, Nebraska 68198-6025, United States
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5
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Kota KP, Soloveva V, Wanner LM, Gomba G, Kiris E, Panchal RG, Kane CD, Bavari S. A high content imaging assay for identification of Botulinum neurotoxin inhibitors. J Vis Exp 2014:e51915. [PMID: 25489815 DOI: 10.3791/51915] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Abstract
Synaptosomal-associated protein-25 (SNAP-25) is a component of the soluble NSF attachment protein receptor (SNARE) complex that is essential for synaptic neurotransmitter release. Botulinum neurotoxin serotype A (BoNT/A) is a zinc metalloprotease that blocks exocytosis of neurotransmitter by cleaving the SNAP-25 component of the SNARE complex. Currently there are no licensed medicines to treat BoNT/A poisoning after internalization of the toxin by motor neurons. The development of effective therapeutic measures to counter BoNT/A intoxication has been limited, due in part to the lack of robust high-throughput assays for screening small molecule libraries. Here we describe a high content imaging (HCI) assay with utility for identification of BoNT/A inhibitors. Initial optimization efforts focused on improving the reproducibility of inter-plate results across multiple, independent experiments. Automation of immunostaining, image acquisition, and image analysis were found to increase assay consistency and minimize variability while enabling the multiparameter evaluation of experimental compounds in a murine motor neuron system.
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Affiliation(s)
- Krishna P Kota
- Perkin Elmer Inc.; Division of Molecular and Translational Sciences, US Army Medical Research Institute of Infectious Diseases;
| | - Veronica Soloveva
- Henry M. Jackson Foundation; Division of Molecular and Translational Sciences, US Army Medical Research Institute of Infectious Diseases; DoD Biotechnology High Performance Computing Software Applications Institute (BHSAI), Telemedicine and Advanced Technology Research Center (TATRC), US Army Medical Research and Materiel Command (USAMRMC)
| | - Laura M Wanner
- The Geneva Foundation; Division of Molecular and Translational Sciences, US Army Medical Research Institute of Infectious Diseases
| | - Glenn Gomba
- ORISE; Division of Molecular and Translational Sciences, US Army Medical Research Institute of Infectious Diseases
| | - Erkan Kiris
- The Geneva Foundation; Frederick National Laboratory for Cancer Research; Division of Molecular and Translational Sciences, US Army Medical Research Institute of Infectious Diseases
| | - Rekha G Panchal
- Division of Molecular and Translational Sciences, US Army Medical Research Institute of Infectious Diseases
| | - Christopher D Kane
- Henry M. Jackson Foundation; Division of Molecular and Translational Sciences, US Army Medical Research Institute of Infectious Diseases; DoD Biotechnology High Performance Computing Software Applications Institute (BHSAI), Telemedicine and Advanced Technology Research Center (TATRC), US Army Medical Research and Materiel Command (USAMRMC)
| | - Sina Bavari
- Division of Molecular and Translational Sciences, US Army Medical Research Institute of Infectious Diseases
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6
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Videnović M, Opsenica DM, Burnett J, Gomba L, Nuss JE, Selaković Ž, Konstantinović J, Krstić M, Šegan S, Zlatović M, Sciotti RJ, Bavari S, Šolaja BA. Second generation steroidal 4-aminoquinolines are potent, dual-target inhibitors of the botulinum neurotoxin serotype A metalloprotease and P. falciparum malaria. J Med Chem 2014; 57:4134-53. [PMID: 24742203 PMCID: PMC4032193 DOI: 10.1021/jm500033r] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2014] [Indexed: 01/25/2023]
Abstract
Significantly more potent second generation 4-amino-7-chloroquinoline (4,7-ACQ) based inhibitors of the botulinum neurotoxin serotype A (BoNT/A) light chain were synthesized. Introducing an amino group at the C(3) position of the cholate component markedly increased potency (IC50 values for such derivatives ranged from 0.81 to 2.27 μM). Two additional subclasses were prepared: bis(steroidal)-4,7-ACQ derivatives and bis(4,7-ACQ)cholate derivatives; both classes provided inhibitors with nanomolar-range potencies (e.g., the Ki of compound 67 is 0.10 μM). During BoNT/A challenge using primary neurons, select derivatives protected SNAP-25 by up to 89%. Docking simulations were performed to rationalize the compounds' in vitro potencies. In addition to specific residue contacts, coordination of the enzyme's catalytic zinc and expulsion of the enzyme's catalytic water were a consistent theme. With respect to antimalarial activity, the compounds provided better IC90 activities against chloroquine resistant (CQR) malaria than CQ, and seven compounds were more active than mefloquine against CQR strain W2.
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Affiliation(s)
- Milica Videnović
- Faculty
of Chemistry, University of Belgrade, Studentski trg 16, P.O. Box 51, 11158, Belgrade, Serbia
| | - Dejan M. Opsenica
- Institute
of Chemistry, Technology, and Metallurgy, University of Belgrade, Njegoseva 12, 11000 Belgrade, Serbia
| | - James
C. Burnett
- Computational
Drug Development Group, Leidos Biomedical
Research, Inc., FNLCR at Frederick, P.O.
Box B, Frederick, Maryland 21701, United States
| | - Laura Gomba
- Department
of Bacteriology, United States Army Medical
Research Institute of Infectious Diseases, 1425 Porter Street, Frederick, Maryland 21702, United States
| | - Jonathan E. Nuss
- Department
of Bacteriology, United States Army Medical
Research Institute of Infectious Diseases, 1425 Porter Street, Frederick, Maryland 21702, United States
| | - Života Selaković
- Faculty
of Chemistry, University of Belgrade, Studentski trg 16, P.O. Box 51, 11158, Belgrade, Serbia
| | - Jelena Konstantinović
- Faculty
of Chemistry Innovative Centre, Studentski trg 12-16, 11158 Belgrade, Serbia
| | - Maja Krstić
- Faculty
of Chemistry, University of Belgrade, Studentski trg 16, P.O. Box 51, 11158, Belgrade, Serbia
| | - Sandra Šegan
- Institute
of Chemistry, Technology, and Metallurgy, University of Belgrade, Njegoseva 12, 11000 Belgrade, Serbia
| | - Mario Zlatović
- Faculty
of Chemistry, University of Belgrade, Studentski trg 16, P.O. Box 51, 11158, Belgrade, Serbia
| | - Richard J. Sciotti
- Division
of Experimental Therapeutics, Walter Reed
Army Institute of Research, Silver
Spring, Maryland 20910, United States
| | - Sina Bavari
- Target
Discovery and Experimental Microbiology, United States Army Medical Research Institute of Infectious Diseases, 1425 Porter Street, Frederick, Maryland 21702, United States
| | - Bogdan A. Šolaja
- Faculty
of Chemistry, University of Belgrade, Studentski trg 16, P.O. Box 51, 11158, Belgrade, Serbia
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7
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Dong Y, Wang X, Cal M, Kaiser M, Vennerstrom JL. Activity of diimidazoline amides against African trypanosomiasis. Bioorg Med Chem Lett 2014; 24:944-8. [PMID: 24398295 DOI: 10.1016/j.bmcl.2013.12.064] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2013] [Revised: 12/14/2013] [Accepted: 12/16/2013] [Indexed: 11/28/2022]
Abstract
We identified several diimidazoline mono- and diamides that were as potent as pentamidine against Trypanosoma brucei rhodesiense in vitro. All of these were also less cytotoxic than pentamidine, but none was as effective as the latter in a T. brucei rhodesiense-infected mouse model. A single imidazoline may be sufficient for high antitrypanosomal activity provided that a second weak base functional group is present.
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Affiliation(s)
- Yuxiang Dong
- College of Pharmacy, University of Nebraska Medical Center, 986025 Nebraska Medical Center, Omaha, NE, USA
| | - Xiaofang Wang
- College of Pharmacy, University of Nebraska Medical Center, 986025 Nebraska Medical Center, Omaha, NE, USA
| | - Monica Cal
- Swiss Tropical and Public Health Institute, Socinstrasse 57, CH-4002 Basel, Switzerland; University of Basel, CH-4003 Basel, Switzerland
| | - Marcel Kaiser
- Swiss Tropical and Public Health Institute, Socinstrasse 57, CH-4002 Basel, Switzerland; University of Basel, CH-4003 Basel, Switzerland
| | - Jonathan L Vennerstrom
- College of Pharmacy, University of Nebraska Medical Center, 986025 Nebraska Medical Center, Omaha, NE, USA.
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Opsenica I, Filipovic V, Nuss JE, Gomba LM, Opsenica D, Burnett JC, Gussio R, Solaja BA, Bavari S. The synthesis of 2,5-bis(4-amidinophenyl)thiophene derivatives providing submicromolar-range inhibition of the botulinum neurotoxin serotype A metalloprotease. Eur J Med Chem 2012; 53:374-9. [PMID: 22516424 PMCID: PMC3361628 DOI: 10.1016/j.ejmech.2012.03.043] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2011] [Revised: 02/22/2012] [Accepted: 03/25/2012] [Indexed: 10/28/2022]
Abstract
Botulinum neurotoxins (BoNTs), composed of a family of seven serotypes (categorized A-G), are the deadliest of known biological toxins. The activity of the metalloprotease, light chain (LC) component of the toxins is responsible for causing the life-threatening paralysis associated with the disease botulism. Herein we report significantly more potent analogs of novel, lead BoNT serotype A LC inhibitor 2,5-bis(4-amidinophenyl)thiophene (K(i) = 10.88 μM ± 0.90 μM). Specifically, synthetic modifications involved simultaneously replacing the lead inhibitor's terminal bis-amidines with secondary amines and the systematic tethering of 4-amino-7-chloroquinoline substituents to provide derivatives with K(i) values ranging from 0.302 μM (± 0.03 μM) to 0.889μM (± 0.11 μM).
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Affiliation(s)
- Igor Opsenica
- Faculty of Chemistry, University of Belgrade, Studentski trg16, P.O. Box 51, Belgrade, Serbia
| | - Vuk Filipovic
- Faculty of Chemistry, University of Belgrade, Studentski trg16, P.O. Box 51, Belgrade, Serbia
| | - Jon E. Nuss
- United States Army Medical Research Institute of Infectious Diseases, Department of Bacteriology, 1425 Porter Street, Frederick, MD 21702, USA
| | - Laura M. Gomba
- United States Army Medical Research Institute of Infectious Diseases, Department of Bacteriology, 1425 Porter Street, Frederick, MD 21702, USA
| | - Dejan Opsenica
- Institute of Chemistry, Technology, and Metallurgy, 12 Njegoseva 12, 11001, P.O. Box 473, Belgrade, Serbia
| | - James C. Burnett
- SAIC-Frederick, Inc., National Cancer Institute at Frederick, Target Structure-Based Drug Discovery Group, P.O. Box B, Frederick, MD 21702, USA
| | - Rick Gussio
- National Cancer Institute at Frederick, Developmental Therapeutics Program, P.O. Box B, Frederick, MD 21702, USA
| | - Bogdan A. Solaja
- Faculty of Chemistry, University of Belgrade, Studentski trg16, P.O. Box 51, Belgrade, Serbia
| | - Sina Bavari
- Chief, Target Discovery and Experimental Microbiology, United States Army Medical Research Institute of Infectious Diseases, 1425 Porter Street, Frederick, MD 21702, USA
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9
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Time-dependent botulinum neurotoxin serotype A metalloprotease inhibitors. Bioorg Med Chem 2011; 19:7338-48. [PMID: 22082667 DOI: 10.1016/j.bmc.2011.10.062] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2011] [Revised: 10/13/2011] [Accepted: 10/19/2011] [Indexed: 11/21/2022]
Abstract
Botulinum neurotoxins (BoNTs) are the most lethal of biological substances, and are categorized as class A biothreat agents by the Centers for Disease Control and Prevention. There are currently no drugs to treat the deadly flaccid paralysis resulting from BoNT intoxication. Among the seven BoNT serotypes, the development of therapeutics to counter BoNT/A is a priority (due to its long half-life in the neuronal cytosol and its ease of production). In this regard, the BoNT/A enzyme light chain (LC) component, a zinc metalloprotease responsible for the intracellular cleavage of synaptosomal-associated protein of 25 kDa, is a desirable target for developing post-BoNT/A intoxication rescue therapeutics. In an earlier study, we reported the high throughput screening of a library containing 70,000 compounds, and uncovered a novel class of benzimidazole acrylonitrile-based BoNT/A LC inhibitors. Herein, we present both structure-activity relationships and a proposed mechanism of action for this novel inhibitor chemotype.
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Li B, Peet NP, Butler MM, Burnett JC, Moir DT, Bowlin TL. Small molecule inhibitors as countermeasures for botulinum neurotoxin intoxication. Molecules 2010; 16:202-20. [PMID: 21193845 PMCID: PMC6259422 DOI: 10.3390/molecules16010202] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2010] [Revised: 12/20/2010] [Accepted: 12/29/2010] [Indexed: 11/18/2022] Open
Abstract
Botulinum neurotoxins (BoNTs) are the most potent of known toxins and are listed as category A biothreat agents by the U.S. CDC. The BoNT-mediated proteolysis of SNARE proteins inhibits the exocytosis of acetylcholine into neuromuscular junctions, leading to life-threatening flaccid paralysis. Currently, the only therapy for BoNT intoxication (which results in the disease state botulism) includes experimental preventative antibodies and long-term supportive care. Therefore, there is an urgent need to identify and develop inhibitors that will serve as both prophylactic agents and post-exposure ‘rescue’ therapeutics. This review focuses on recent progress to discover and develop small molecule inhibitors as therapeutic countermeasures for BoNT intoxication.
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Affiliation(s)
- Bing Li
- Microbiotix, Inc., One Innovation Drive, Worcester, MA 01605, USA
- Author to whom correspondence should be addressed; E-Mail: ; Tel.: +1-508-757-2800; Fax: +1-508-757-1999
| | - Norton P. Peet
- Microbiotix, Inc., One Innovation Drive, Worcester, MA 01605, USA
| | | | - James C. Burnett
- Target, Structure-Based Drug Discovery Group, SAIC-Frederick, Inc., National Cancer Institute at Frederick, 1050 Boyles Street, Frederick, MD 21702, USA; E-Mail: (J.C.B.)
| | - Donald T. Moir
- Microbiotix, Inc., One Innovation Drive, Worcester, MA 01605, USA
| | - Terry L. Bowlin
- Microbiotix, Inc., One Innovation Drive, Worcester, MA 01605, USA
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