Two-color DNA nanoprobe of intracellular dynamics

An upper limit on Gibbs energy dissipation governs cellular metabolism

The principles governing cellular metabolic operation are poorly understood. Because diverse organisms show similar metabolic flux patterns, we hypothesized that a fundamental thermodynamic constraint might shape cellular metabolism. Here, we develop a constraint-based model for Saccharomyces cerevisiae with a comprehensive description of biochemical thermodynamics including a Gibbs energy balance. Non-linear regression analyses of quantitative metabolome and physiology data reveal the existence of an upper rate limit for cellular Gibbs energy dissipation. By applying this limit in flux balance analyses with growth maximization as the objective function, our model correctly predicts the physiology and intracellular metabolic fluxes for different glucose uptake rates as well as the maximal growth rate. We find that cells arrange their intracellular metabolic fluxes in such a way that, with increasing glucose uptake rates, they can accomplish optimal growth rates but stay below the critical rate limit on Gibbs energy dissipation. Once all possibilities for intracellular flux redistribution are exhausted, cells reach their maximal growth rate. This principle also holds for Escherichia coli and different carbon sources. Our work proposes that metabolic reaction stoichiometry, a limit on the cellular Gibbs energy dissipation rate, and the objective of growth maximization shape metabolism across organisms and conditions.

A novel carboxymethyl chitosan-quantum dot-based intracellular probe for Zn2+ ion sensing in prostate cancer cells

In this paper, we fabricated novel carboxymethyl chitosan-coated CdTe quantum dots (CMC-CdTe QDs) via the electrostatic interaction between amino groups in the carboxymethyl chitosan polymeric chains and carboxyl groups of the CdTe QDs. Carboxymethyl chitosan on the surface of CdTe QDs had strong binding ability with Zn(2+), resulting in the obvious enhancement of the photoluminescence of CdTe QDs. The photoluminescence intensity of CMC-CdTe QDs probe was proportional to the concentration of Zn(2+) in the range of 5.0 × 10(-6) to 5.0 × 10(-3) mol l(-1). The detection limit for Zn(2+) was 4.5 × 10(-6) mol l(-1). The experimental results indicate that the CMC-CdTe QDs possess favorable cell compatibility, good sensitivity and selectivity for intracellular Zn(2+) sensing, and are promising candidates for cellular imaging and sensing in prostate cancer cells. The present study also provides an approach for the further development of nanoprobes dedicated to intracellular sensing.

Luminescent nanoparticles and their applications in the life sciences

Nanoparticles have recently emerged as an important group of materials used in numerous disciplines within the life sciences, ranging from basic biophysical research to clinical therapeutics. Luminescent nanoparticles make excellent optical bioprobes significantly extending the capabilities of alternative fluorophores such as organic dyes and genetically engineered fluorescent proteins. Their advantages include excellent photostability, tunable and narrow spectra, controllable size, resilience to environmental conditions such as pH and temperature, combined with a large surface for anchoring targeting biomolecules. Some types of nanoparticles provide enhanced detection contrast due to their long emission lifetime and/or luminescence wavelength blue-shift (anti-Stokes) due to energy upconversion. This topical review focuses on four key types of luminescent nanoparticles whose emission is governed by different photophysics. We discuss the origin and characteristics of optical absorption and emission in these nanoparticles and give a brief account of synthesis and surface modification procedures. We also introduce some of their applications with opportunities for further development, which could be appreciated by the physics-trained readership.