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Carvalho LAR, Almeida VT, Brito JA, Lum KM, Oliveira TF, Guedes RC, Gonçalves LM, Lucas SD, Cravatt BF, Archer M, Moreira R. 3-Oxo-β-sultam as a Sulfonylating Chemotype for Inhibition of Serine Hydrolases and Activity-Based Protein Profiling. ACS Chem Biol 2020; 15:878-883. [PMID: 32176480 DOI: 10.1021/acschembio.0c00090] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
3-Oxo-β-sultams are four-membered ring ambident electrophiles that can react with nucleophiles either at the carbonyl carbon or at the sulfonyl sulfur atoms, and that have been reported to inhibit serine hydrolases via acylation of the active-site serine residue. We have developed a panel of 3-oxo-β-sultam inhibitors and show, through crystallographic data, that they are regioselective sulfonylating electrophiles, covalently binding to the catalytic serine of human and porcine elastases through the sulfur atom. Application of 3-oxo-β-sultam-derived activity-based probes in a human proteome revealed their potential to label disease-related serine hydrolases and proteasome subunits. Activity-based protein profiling applications of 3-oxo-β-sultams should open up new opportunities to investigate these classes of enzymes in complex proteomes and expand the toolbox of available sulfur-based covalent protein modifiers in chemical biology.
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Affiliation(s)
- Luís A. R. Carvalho
- Department of Medicinal Chemistry, Research Institute for Medicines (iMed.ULisboa), Faculdade de Farmacia, Universidade de Lisboa, Av. Prof. Gama Pinto, 1649-003 Lisboa, Portugal
| | - Vanessa T. Almeida
- Biological Chemistry Division, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB NOVA), Av. da República, 2780-157 Oeiras, Portugal
| | - José A. Brito
- Biological Chemistry Division, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB NOVA), Av. da República, 2780-157 Oeiras, Portugal
| | - Kenneth M. Lum
- Department of Chemistry, The Scripps Research Institute, La Jolla, California 92037, United States
| | - Tânia F. Oliveira
- Biological Chemistry Division, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB NOVA), Av. da República, 2780-157 Oeiras, Portugal
| | - Rita C. Guedes
- Department of Medicinal Chemistry, Research Institute for Medicines (iMed.ULisboa), Faculdade de Farmacia, Universidade de Lisboa, Av. Prof. Gama Pinto, 1649-003 Lisboa, Portugal
| | - Lídia M. Gonçalves
- Department of Medicinal Chemistry, Research Institute for Medicines (iMed.ULisboa), Faculdade de Farmacia, Universidade de Lisboa, Av. Prof. Gama Pinto, 1649-003 Lisboa, Portugal
| | - Susana D. Lucas
- Department of Medicinal Chemistry, Research Institute for Medicines (iMed.ULisboa), Faculdade de Farmacia, Universidade de Lisboa, Av. Prof. Gama Pinto, 1649-003 Lisboa, Portugal
| | - Benjamin F. Cravatt
- Department of Chemistry, The Scripps Research Institute, La Jolla, California 92037, United States
| | - Margarida Archer
- Biological Chemistry Division, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB NOVA), Av. da República, 2780-157 Oeiras, Portugal
| | - Rui Moreira
- Department of Medicinal Chemistry, Research Institute for Medicines (iMed.ULisboa), Faculdade de Farmacia, Universidade de Lisboa, Av. Prof. Gama Pinto, 1649-003 Lisboa, Portugal
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Warner GR, Somasundar Y, Jansen KC, Kaaret EZ, Weng C, Burton AE, Mills MR, Shen LQ, Ryabov AD, Pros G, Pintauer T, Biswas S, Hendrich MP, Taylor JA, Vom Saal FS, Collins TJ. Bioinspired, Multidisciplinary, Iterative Catalyst Design Creates the Highest Performance Peroxidase Mimics and the Field of Sustainable Ultradilute Oxidation Catalysis (SUDOC). ACS Catal 2019. [DOI: 10.1021/acscatal.9b01409] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Genoa R. Warner
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Yogesh Somasundar
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Kyle C. Jansen
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Evan Z. Kaaret
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Cindy Weng
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Abigail E. Burton
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Matthew R. Mills
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Longzhu Q. Shen
- University of Cambridge, Downing Street, Cambridge CB2 3EJ, United Kingdom
| | - Alexander D. Ryabov
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Gabrielle Pros
- Department of Chemistry and Biochemistry, 600 Forbes Avenue, Duquesne University, Pittsburgh, Pennsylvania 15282, United States
| | - Tomislav Pintauer
- Department of Chemistry and Biochemistry, 600 Forbes Avenue, Duquesne University, Pittsburgh, Pennsylvania 15282, United States
| | - Saborni Biswas
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Michael P. Hendrich
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Julia A. Taylor
- Division of Biological Sciences, University of Missouri, Columbia, Missouri 65211, United States
| | - Frederick S. Vom Saal
- Division of Biological Sciences, University of Missouri, Columbia, Missouri 65211, United States
| | - Terrence J. Collins
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
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Rai A, Rai VK, Singh AK, Yadav LDS. [2 + 2] Annulation of Aldimines with Sulfonic Acids: A Novel One-Pot cis-Selective Route to β-Sultams. European J Org Chem 2011. [DOI: 10.1002/ejoc.201100628] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Ito M, Koo L, Himizu A, Kobayashi C, Sakaguchi A, Ikariya T. Hydrogenation of N-Acylcarbamates and N-Acylsulfonamides Catalyzed by a Bifunctional [Cp*Ru(PN)] Complex. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200805307] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Ito M, Koo L, Himizu A, Kobayashi C, Sakaguchi A, Ikariya T. Hydrogenation of N-Acylcarbamates and N-Acylsulfonamides Catalyzed by a Bifunctional [Cp*Ru(PN)] Complex. Angew Chem Int Ed Engl 2009; 48:1324-7. [DOI: 10.1002/anie.200805307] [Citation(s) in RCA: 68] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Tsang WY, Ahmed N, Hemming K, Page MI. An Activated Sulfonylating Agent That Undergoes General Base-Catalyzed Hydrolysis by Amines in Preference to Aminolysis. J Org Chem 2008; 73:4504-12. [DOI: 10.1021/jo800407x] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Wing Y. Tsang
- Department of Chemical and Biological Sciences, The University of Huddersfield, Queensgate, Huddersfield, HD1 3DH, United Kingdom
| | - Naveed Ahmed
- Department of Chemical and Biological Sciences, The University of Huddersfield, Queensgate, Huddersfield, HD1 3DH, United Kingdom
| | - Karl Hemming
- Department of Chemical and Biological Sciences, The University of Huddersfield, Queensgate, Huddersfield, HD1 3DH, United Kingdom
| | - Michael I. Page
- Department of Chemical and Biological Sciences, The University of Huddersfield, Queensgate, Huddersfield, HD1 3DH, United Kingdom
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Corrie JET, Eccleston JF, Ferenczi MA, Moore MH, Turkenburg JP, Trentham DR. Ring-chain interconversion of sulforhodamine-amine conjugates involves an unusually labile CN bond and allows measurement of sulfonamide ionization kinetics. J PHYS ORG CHEM 2008. [DOI: 10.1002/poc.1318] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Mulchande J, Guedes RC, Tsang WY, Page MI, Moreira R, Iley J. Azetidine-2,4-diones (4-Oxo-β-lactams) as Scaffolds for Designing Elastase Inhibitors. J Med Chem 2008; 51:1783-90. [DOI: 10.1021/jm701257h] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jalmira Mulchande
- iMed.UL, CECF, Faculdade de Farmácia, Universidade de Lisboa, Av. Forças Armadas, 1600-083 Lisboa, Portugal, Department of Chemical & Biological Sciences, University of Huddersfield, Huddersfield, HD1 3DH, U.K., and Department of Chemistry, The Open University, Milton Keynes, MK7 6AA, U.K
| | - Rita C. Guedes
- iMed.UL, CECF, Faculdade de Farmácia, Universidade de Lisboa, Av. Forças Armadas, 1600-083 Lisboa, Portugal, Department of Chemical & Biological Sciences, University of Huddersfield, Huddersfield, HD1 3DH, U.K., and Department of Chemistry, The Open University, Milton Keynes, MK7 6AA, U.K
| | - Wing-Yin Tsang
- iMed.UL, CECF, Faculdade de Farmácia, Universidade de Lisboa, Av. Forças Armadas, 1600-083 Lisboa, Portugal, Department of Chemical & Biological Sciences, University of Huddersfield, Huddersfield, HD1 3DH, U.K., and Department of Chemistry, The Open University, Milton Keynes, MK7 6AA, U.K
| | - Michael I. Page
- iMed.UL, CECF, Faculdade de Farmácia, Universidade de Lisboa, Av. Forças Armadas, 1600-083 Lisboa, Portugal, Department of Chemical & Biological Sciences, University of Huddersfield, Huddersfield, HD1 3DH, U.K., and Department of Chemistry, The Open University, Milton Keynes, MK7 6AA, U.K
| | - Rui Moreira
- iMed.UL, CECF, Faculdade de Farmácia, Universidade de Lisboa, Av. Forças Armadas, 1600-083 Lisboa, Portugal, Department of Chemical & Biological Sciences, University of Huddersfield, Huddersfield, HD1 3DH, U.K., and Department of Chemistry, The Open University, Milton Keynes, MK7 6AA, U.K
| | - Jim Iley
- iMed.UL, CECF, Faculdade de Farmácia, Universidade de Lisboa, Av. Forças Armadas, 1600-083 Lisboa, Portugal, Department of Chemical & Biological Sciences, University of Huddersfield, Huddersfield, HD1 3DH, U.K., and Department of Chemistry, The Open University, Milton Keynes, MK7 6AA, U.K
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Tsang WY, Ahmed N, Hemming K, Page MI. Reactivity and selectivity in the inhibition of elastase by 3-oxo-β-sultams and in their hydrolysis. Org Biomol Chem 2007; 5:3993-4000. [DOI: 10.1039/b713899g] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Hemming K, O’Gorman PA, Page MI. The synthesis of azabicyclo[4.2.1]nonenes by the addition of a cyclopropenone to 4-vinyl substituted 1-azetines—isomers of the homotropane nucleus. Tetrahedron Lett 2006. [DOI: 10.1016/j.tetlet.2005.11.081] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Page MI, Tsang WY, Ahmed N. Comparison of the mechanisms of reactions of β-lactams and β-sultams, including their reactions with some serine enzymes. J PHYS ORG CHEM 2006. [DOI: 10.1002/poc.1016] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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