1
|
Lee JL, Biswas S, Ziller JW, Bominaar EL, Hendrich MP, Borovik AS. Accessing a synthetic Fe IIIMn IV core to model biological heterobimetallic active sites. Chem Sci 2024; 15:2817-2826. [PMID: 38404374 PMCID: PMC10882444 DOI: 10.1039/d3sc04900k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Accepted: 12/22/2023] [Indexed: 02/27/2024] Open
Abstract
Metalloproteins with dinuclear cores are known to bind and activate dioxygen, with a subclass of these proteins having active sites containing FeMn cofactors and activities ranging from long-range proton-coupled electron transfer (PCET) to post-translational peptide modification. While mechanistic studies propose that these metallocofactors access FeIIIMnIV intermediates, there is a dearth of related synthetic analogs. Herein, the first well-characterized synthetic FeIII-(μ-O)-MnIV complex is reported; this complex shows similar spectroscopic features as the catalytically competent FeIIIMnIV intermediate X found in Class Ic ribonucleotide reductase and demonstrates PCET function towards phenolic substrates. This complex is prepared from the oxidation of the isolable FeIII-(μ-O)-MnIII species, whose stepwise assembly is facilitated by a tripodal ligand containing phosphinic amido groups. Structural and spectroscopic studies found proton movement involving the FeIIIMnIII core, whereby the initial bridging hydroxido ligand is converted to an oxido ligand with concomitant protonation of one phosphinic amido group. This series of FeMn complexes allowed us to address factors that may dictate the preference of an active site for a heterobimetallic cofactor over one that is homobimetallic: comparisons of the redox properties of our FeMn complexes with those of the di-Fe analogs suggested that the relative thermodynamic ease of accessing an FeIIIMnIV core can play an important role in determining the metal ion composition when the key catalytic steps do not require an overly potent oxidant. Moreover, these complexes allowed us to demonstrate the effect of the hyperfine interaction from non-Fe nuclei on 57Fe Mössbauer spectra which is relevant to MnFe intermediates in proteins.
Collapse
Affiliation(s)
- Justin L Lee
- Department of Chemistry, University of California-Irvine Irvine CA 92697 USA
| | - Saborni Biswas
- Department of Chemistry, Carnegie Mellon University Pittsburgh PA 15213 USA
| | - Joseph W Ziller
- Department of Chemistry, University of California-Irvine Irvine CA 92697 USA
| | - Emile L Bominaar
- Department of Chemistry, Carnegie Mellon University Pittsburgh PA 15213 USA
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University Pittsburgh PA 15213 USA
| | - A S Borovik
- Department of Chemistry, University of California-Irvine Irvine CA 92697 USA
| |
Collapse
|
2
|
Ross DL, Jasniewski AJ, Ziller JW, Bominaar EL, Hendrich MP, Borovik AS. Modulation of the Bonding between Copper and a Redox-Active Ligand by Hydrogen Bonds and Its Effect on Electronic Coupling and Spin States. J Am Chem Soc 2024; 146:500-513. [PMID: 38150413 DOI: 10.1021/jacs.3c09983] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2023]
Abstract
The exchange coupling of electron spins can strongly influence the properties of chemical species. The regulation of this type of electronic coupling has been explored within complexes that have multiple metal ions but to a lesser extent in complexes that pair a redox-active ligand with a single metal ion. To bridge this gap, we investigated the interplay among the structural and magnetic properties of mononuclear Cu complexes and exchange coupling between a Cu center and a redox-active ligand over three oxidation states. The computational analysis of the structural properties established a relationship between the complexes' magnetic properties and a bonding interaction involving a dx2-y2 orbital of the Cu ion and π orbital of the redox-active ligand that are close in energy. The additional bonding interaction affects the geometry around the Cu center and was found to be influenced by intramolecular H-bonds introduced by the external ligands. The ability to synthetically tune the d-π interactions using H-bonds illustrates a new type of control over the structural and magnetic properties of metal complexes.
Collapse
Affiliation(s)
- Dolores L Ross
- Department of Chemistry, 1102 Natural Science II, University of California, Irvine, California 92697, United States
| | - Andrew J Jasniewski
- Department of Molecular Biology and Biochemistry, University of California, Irvine, California 92697, United States
| | - Joseph W Ziller
- Department of Chemistry, 1102 Natural Science II, University of California, Irvine, California 92697, United States
| | - Emile L Bominaar
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - A S Borovik
- Department of Chemistry, 1102 Natural Science II, University of California, Irvine, California 92697, United States
| |
Collapse
|
3
|
Nemykin VN, Sabin JR, Kail BW, Upadhyay A, Hendrich MP, Basu P. Influence of the ligand-field on EPR parameters of cis- and trans-isomers in Mo V systems relevant to molybdenum enzymes: Experimental and density functional theory study. J Inorg Biochem 2023; 245:112228. [PMID: 37149488 PMCID: PMC10330323 DOI: 10.1016/j.jinorgbio.2023.112228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2022] [Revised: 04/12/2023] [Accepted: 04/12/2023] [Indexed: 05/08/2023]
Abstract
The electron paramagnetic resonance (EPR) investigation of mononuclear cis- and trans-(L1O)MoOCl2 complexes [L1OH = bis(3,5-dimethylpyrazolyl)-3-tert-butyl-2-hydroxy-5-methylphenyl)methane] reveals a significant difference in their spin Hamiltonian parameters which reflect different equatorial and axial ligand fields created by the heteroscorpionate donor atoms. Density functional theory (DFT) was used to calculate the values of principal components and relative orientations of the g and A tensors, and the molecular framework in four pairs of isomeric mononuclear oxo‑molybdenum(V) complexes (cis- and trans-(L1O)MoOCl2, cis,cis- and cis,trans-(L-N2S2)MoOCl [L-N2S2H2 = N,N'-dimethyl-N,N'-bis(mercaptophenyl)ethylenediamine], cis,cis- and cis,trans-(L-N2S2)MoO(SCN), and cis- and trans-[(dt)2MoO(OMe)]2- [dtH2 = 2,3-dimercapto-2-butene]). Scalar relativistic DFT calculations were conducted using three different exchange-correlation functionals. It was found that the use of hybrid exchange-correlation functional with 25% of the Hartree-Fock exchange leads to the best quantitative agreement between theory and experiment. A simplified ligand-field approach was used to analyze the influence of the ligand fields in all cis- and trans-isomers on energies and contributions of molybdenum d-orbital manifold to g and A tensors and relative orientations. Specifically, contributions that originated from the spin-orbit coupling of the dxz, dyz, and dx2-y2 orbitals into the ground state have been discussed. The new findings are discussed in the context of the experimental data of mononuclear molybdoenzyme, DMSO reductase.
Collapse
Affiliation(s)
- Victor N Nemykin
- Department of Chemistry, University of Tennessee - Knoxville, Knoxville, TN 37996, USA; Department of Chemistry and Biochemistry, University of Minnesota Duluth, Duluth, MN 55812, USA.
| | - Jared R Sabin
- Department of Chemistry and Biochemistry, University of Minnesota Duluth, Duluth, MN 55812, USA
| | - Brian W Kail
- Department of Chemistry and Biochemistry, Duquesne University, Pittsburgh, PA 15216, USA
| | - Anup Upadhyay
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, PA 15213, USA
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
| | - Partha Basu
- Department of Chemistry and Biochemistry, Duquesne University, Pittsburgh, PA 15216, USA; Department of Chemistry and Chemical Biology, Indiana University Purdue University Indianapolis, Indianapolis, IN 46202, USA.
| |
Collapse
|
4
|
Pal P, Schafer MC, Hendrich MP, Ryabov AD, Collins TJ. The Mechanism of Formation of Active Fe-TAMLs Using HClO Enlightens Design for Maximizing Catalytic Activity at Environmentally Optimal, Circumneutral pH. Inorg Chem 2023; 62:5586-5592. [PMID: 36967523 PMCID: PMC10091481 DOI: 10.1021/acs.inorgchem.3c00104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/28/2023]
Abstract
Fe-TAML/peroxide catalysis provides simple, powerful, ultradilute approaches for removing micropollutants from water. The typically rate-determining interactions of H2O2 with Fe-TAMLs (rate constant kI) are sharply pH-sensitive with rate maxima in the pH 9-10 window. Fe-TAML design or process design that shifts the maximum rates to the pH 6-8 window of most wastewaters would make micropollutant eliminations even more powerful. Here, we show how the different pH dependencies of the interactions of Fe-TAMLs with peroxide or hypochlorite to form active Fe-TAMLs (kI step) illuminate why moving from H2O2 (pKa, ca. 11.6) to hypochlorite (pKa, 7.5) shifts the pH of the fastest catalysis to as low as 8.2. At pH 7, hypochlorite catalysis is 100-1000 times faster than H2O2 catalysis. The pH of maximum catalytic activity is also moderated by the pKa's of the Fe-TAML axial water ligands, 8.8, 9.3, and 10.3, respectively, for [Fe{4-NO2C6H3-1,2-(NCOCMe2NSO2)2CHMe}(H2O)n]- (2) [n = 1-2], [Fe{4-NO2C6H3-1,2-(NCOCMe2NCO)2CF2}(H2O)n]- (1b), and [Fe{C6H4-1,2-(NCOCMe2NCO)2CMe2}(H2O)n]- (1a). The new bis(sulfonamido)-bis(carbonamido)-ligated 2 exhibits the lowest pKa and delivers the largest hypochlorite over peroxide catalytic rate advantage. The fast Fe-TAML/hypochlorite catalysis is accompanied by slow noncatalytic oxidations of Orange II.
Collapse
|
5
|
Wu T, Rajabimoghadam K, Puri A, Hebert DD, Qiu YL, Eichelberger S, Siegler MA, Swart M, Hendrich MP, Garcia-Bosch I. A 4H +/4e - Electron-Coupled-Proton Buffer Based on a Mononuclear Cu Complex. J Am Chem Soc 2022; 144:16905-16915. [PMID: 36083845 PMCID: PMC10123533 DOI: 10.1021/jacs.2c05454] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In this research article, we describe a 4H+/4e- electron-coupled-proton buffer (ECPB) based on Cu and a redox-active ligand. The protonated/reduced ECPB (complex 1: [Cu(8H+/14e-)]1+), consisting of CuI with 2 equiv of the ligand (catLH4: 1,1'-(4,5-dimethoxy-1,2-phenylene)bis(3-(tert-butyl)urea)), reacted with H+/e- acceptors such as O2 to generate the deprotonated/oxidized ECPB. The resulting compound, (complex 5: [Cu(4H+/10e-)]1+), was characterized by X-ray diffraction analysis, nuclear magnetic resonance (1H-NMR), and density functional theory, and it is electronically described as a cuprous bis(benzoquinonediimine) species. The stoichiometric 4H+/4e- reduction of 5 was carried out with H+/e- donors to generate 1 (CuI and 2 equiv of catLH4) and the corresponding oxidation products. The 1/5 ECPB system catalyzed the 4H+/4e- reduction of O2 to H2O and the dehydrogenation of organic substrates in a decoupled (oxidations and reductions are separated in time and space) and a coupled fashion (oxidations and reductions coincide in time and space). Mechanistic analysis revealed that upon reductive protonation of 5 and oxidative deprotonation of 1, fast disproportionation reactions regenerate complexes 5 and 1 in a stoichiometric fashion to maintain the ECPB equilibrium.
Collapse
Affiliation(s)
- Tong Wu
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | | | - Ankita Puri
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - David D Hebert
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Yi Lin Qiu
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Sidney Eichelberger
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, United States
| | - Maxime A Siegler
- Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Marcel Swart
- University of Girona, IQCC, Campus Montilivi (Cie#x300;ncies), 17003 Girona, Spain.,ICREA, Pg. Lluís Companys 23, 08010 Barcelona, Spain
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Isaac Garcia-Bosch
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| |
Collapse
|
6
|
Lee JL, Biswas S, Sun C, Ziller JW, Hendrich MP, Borovik AS. Bioinspired Di-Fe Complexes: Correlating Structure and Proton Transfer over Four Oxidation States. J Am Chem Soc 2022; 144:4559-4571. [PMID: 35192354 DOI: 10.1021/jacs.1c12888] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Metalloproteins with active sites containing di-Fe cores exhibit diverse chemical reactivity that is linked to the precise transfer of protons and electrons which directly involve the di-Fe units. The redox conversions are commonly corroborated by spectroscopic methods, but the associated structural changes are often difficult to assess, particularly those related to proton movements. This report describes the development of di-Fe complexes in which the movements of protons and electrons are pinpointed during the stepwise oxidation of a di-FeII species to one with an FeIIIFeIV core. Complex formation was promoted using the phosphinic amido tripodal ligand [poat]3- (N,N',N″-[nitrilotris(ethane-2,1-diyl)]tris(P,P-diphenylphosphinic amido)) that provided dynamic coordination spheres that assisted in regulating both electron and proton transfer processes. Oxidation of an [FeII-(μ-OH)-FeIII] complex led to the corresponding di-FeIII species containing a hydroxido bridge that was not stable at room temperature and converted to a species containing an oxido bridging ligand and protonation of one phosphinic amido group to form [Hpoat]2-. Deprotonation led to a new species with an [FeIII-(μ-O)-FeIII] core that could be further oxidized to its FeIIIFeIV analogue. Reactions with phenols suggest homolytic cleavage of the O-H bond to give products that are consistent with the initial formation of a phenoxyl radical─spectroscopic studies indicated that the electron is transferred to the FeIV center, and the proton is initially transferred to the more sterically hindered oxido ligand but then relocates to [poat]3-. These findings offer new mechanistic insights related to the stability of and the reactions performed by di-Fe enzymes.
Collapse
Affiliation(s)
- Justin L Lee
- Department of Chemistry, University of California,1102 Natural Sciences II, Irvine, California 92697, United States
| | - Saborni Biswas
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Chen Sun
- Department of Chemistry, University of California,1102 Natural Sciences II, Irvine, California 92697, United States
| | - Joseph W Ziller
- Department of Chemistry, University of California,1102 Natural Sciences II, Irvine, California 92697, United States
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - A S Borovik
- Department of Chemistry, University of California,1102 Natural Sciences II, Irvine, California 92697, United States
| |
Collapse
|
7
|
Yan W, Song H, Song F, Guo Y, Wu CH, Her AS, Pu Y, Wang S, Naowarojna N, Weitz A, Hendrich MP, Costello CE, Zhang L, Liu P, Zhang YJ. Retraction Note: Endoperoxide formation by an α-ketoglutarate-dependent mononuclear non-haem iron enzyme. Nature 2021; 593:612. [PMID: 34012118 DOI: 10.1038/s41586-021-03527-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Wupeng Yan
- Department of Molecular Biosciences, University of Texas at Austin, Austin, 78712, Texas, USA
| | - Heng Song
- Department of Chemistry, Boston University, Boston, 02215, Massachusetts, USA
| | - Fuhang Song
- CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
| | - Yisong Guo
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, 15213, Pennsylvania, USA
| | - Cheng-Hsuan Wu
- Department of Chemistry, Boston University, Boston, 02215, Massachusetts, USA
| | - Ampon Sae Her
- Department of Chemistry, Boston University, Boston, 02215, Massachusetts, USA
| | - Yi Pu
- Department of Chemistry, Boston University, Boston, 02215, Massachusetts, USA.,Center for Biomedical Mass Spectrometry, Boston University School of Medicine, Boston, 02118, Massachusetts, USA
| | - Shu Wang
- Department of Chemistry, Boston University, Boston, 02215, Massachusetts, USA
| | - Nathchar Naowarojna
- Department of Chemistry, Boston University, Boston, 02215, Massachusetts, USA
| | - Andrew Weitz
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, 15213, Pennsylvania, USA
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, 15213, Pennsylvania, USA
| | - Catherine E Costello
- Department of Chemistry, Boston University, Boston, 02215, Massachusetts, USA.,Center for Biomedical Mass Spectrometry, Boston University School of Medicine, Boston, 02118, Massachusetts, USA
| | - Lixin Zhang
- CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
| | - Pinghua Liu
- Department of Chemistry, Boston University, Boston, 02215, Massachusetts, USA.
| | - Yan Jessie Zhang
- Department of Molecular Biosciences, University of Texas at Austin, Austin, 78712, Texas, USA. .,Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, 78712, Texas, USA.
| |
Collapse
|
8
|
Miller KR, Biswas S, Jasniewski A, Follmer AH, Biswas A, Albert T, Sabuncu S, Bominaar EL, Hendrich MP, Moënne-Loccoz P, Borovik AS. Artificial Metalloproteins with Dinuclear Iron-Hydroxido Centers. J Am Chem Soc 2021; 143:2384-2393. [PMID: 33528256 DOI: 10.1021/jacs.0c12564] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Dinuclear iron centers with a bridging hydroxido or oxido ligand form active sites within a variety of metalloproteins. A key feature of these sites is the ability of the protein to control the structures around the Fe centers, which leads to entatic states that are essential for function. To simulate this controlled environment, artificial proteins have been engineered using biotin-streptavidin (Sav) technology in which Fe complexes from adjacent subunits can assemble to form [FeIII-(μ-OH)-FeIII] cores. The assembly process is promoted by the site-specific localization of the Fe complexes within a subunit through the designed mutation of a tyrosinate side chain to coordinate the Fe centers. An important outcome is that the Sav host can regulate the Fe···Fe separation, which is known to be important for function in natural metalloproteins. Spectroscopic and structural studies from X-ray diffraction methods revealed uncommonly long Fe···Fe separations that change by less than 0.3 Å upon the binding of additional bridging ligands. The structural constraints imposed by the protein host on the di-Fe cores are unique and create examples of active sites having entatic states within engineered artificial metalloproteins.
Collapse
Affiliation(s)
- Kelsey R Miller
- Department of Chemistry, 1102 Natural Sciences II, University of California, Irvine, California 92697, United States
| | - Saborni Biswas
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Andrew Jasniewski
- Department of Molecular Biology and Biochemistry, University of California, Irvine, California 92697, United States
| | - Alec H Follmer
- Department of Chemistry, 1102 Natural Sciences II, University of California, Irvine, California 92697, United States
| | - Ankita Biswas
- Department of Chemistry, 1102 Natural Sciences II, University of California, Irvine, California 92697, United States
| | - Therese Albert
- Department of Biochemistry and Molecular Biology, Oregon Health & Science University, Mail Code HRC3, 3181 SW Sam Jackson Park Road, Portland, Oregon 97239, United States
| | - Sinan Sabuncu
- Department of Biochemistry and Molecular Biology, Oregon Health & Science University, Mail Code HRC3, 3181 SW Sam Jackson Park Road, Portland, Oregon 97239, United States
| | - Emile L Bominaar
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Pierre Moënne-Loccoz
- Department of Biochemistry and Molecular Biology, Oregon Health & Science University, Mail Code HRC3, 3181 SW Sam Jackson Park Road, Portland, Oregon 97239, United States
| | - A S Borovik
- Department of Chemistry, 1102 Natural Sciences II, University of California, Irvine, California 92697, United States
| |
Collapse
|
9
|
Lee JL, Oswald VF, Biswas S, Hill EA, Ziller JW, Hendrich MP, Borovik AS. Stepwise assembly of heterobimetallic complexes: synthesis, structure, and physical properties. Dalton Trans 2021; 50:8111-8119. [PMID: 34019606 DOI: 10.1039/d1dt01021b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Bimetallic active sites are ubiquitous in metalloenzymes and have sparked investigations of synthetic models to aid in the establishment of structure-function relationship. We previously reported a series of discrete bimetallic complexes with [FeIII-(μ-OH)-MII] cores in which the ligand framework provides distinct binding sites for two metal centers. The formation of these complexes relied on a stepwise synthetic approach in which an FeIII-OH complex containing a sulfonamido tripodal ligand served as a synthon that promoted assembly. We have utilized this approach in the present study to produce a new series of bimetallic complexes with [FeIII-(μ-OH)-MII] cores (M = Ni, Cu, Zn) by using an ancillary ligand to the FeIII center that contains phosphinic amido groups. Assembly began with formation of an FeIII-OH that was subsequently used to bind the MII fragment that contained a triazacyclononane ligand. The series of bimetallic complexes were charactered structurally by X-ray diffraction methods, spectroscopically by absorption, vibrational, electron paramagnetic resonance spectroscopies, and electrochemically by cyclic voltammetry. A notable finding is that these new [FeIII-(μ-OH)-MII] complexes displayed significantly lower reduction potentials than their sulfonamido counterparts, which paves way for future studies on high valent bimetallic complexes in this scaffold.
Collapse
Affiliation(s)
- Justin L Lee
- Department of Chemistry, 1102 Natural Sciences II, University of California, Irvine, California 92697, USA.
| | - Victoria F Oswald
- Department of Chemistry, 1102 Natural Sciences II, University of California, Irvine, California 92697, USA.
| | - Saborni Biswas
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, USA
| | - Ethan A Hill
- Department of Chemistry, 1102 Natural Sciences II, University of California, Irvine, California 92697, USA.
| | - Joseph W Ziller
- Department of Chemistry, 1102 Natural Sciences II, University of California, Irvine, California 92697, USA.
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, USA
| | - A S Borovik
- Department of Chemistry, 1102 Natural Sciences II, University of California, Irvine, California 92697, USA.
| |
Collapse
|
10
|
Geng J, Weitz AC, Dornevil K, Hendrich MP, Liu A. Kinetic and Spectroscopic Characterization of the Catalytic Ternary Complex of Tryptophan 2,3-Dioxygenase. Biochemistry 2020; 59:2813-2822. [PMID: 32659080 DOI: 10.1021/acs.biochem.0c00179] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
The first step of the kynurenine pathway for l-tryptophan (l-Trp) degradation is catalyzed by heme-dependent dioxygenases, tryptophan 2,3-dioxygenase (TDO) and indoleamine 2,3-dioxygenase. In this work, we employed stopped-flow optical absorption spectroscopy to study the kinetic behavior of the Michaelis complex of Cupriavidus metallidurans TDO (cmTDO) to improve our understanding of oxygen activation and initial oxidation of l-Trp. On the basis of the stopped-flow results, rapid freeze-quench (RFQ) experiments were performed to capture and characterize this intermediate by Mössbauer spectroscopy. By incorporating the chlorite dismutase-chlorite system to produce high concentrations of solubilized O2, we were able to capture the Michaelis complex of cmTDO in a nearly quantitative yield. The RFQ-Mössbauer results confirmed the identity of the Michaelis complex as an O2-bound ferrous species. They revealed remarkable similarities between the electronic properties of the Michaelis complex and those of the O2 adduct of myoglobin. We also found that the decay of this reactive intermediate is the rate-limiting step of the catalytic reaction. An inverse α-secondary substrate kinetic isotope effect was observed with a kH/kD of 0.87 ± 0.03 when (indole-d5)-l-Trp was employed as the substrate. This work provides an important piece of spectroscopic evidence of the chemical identity of the Michaelis complex of bacterial TDO.
Collapse
Affiliation(s)
- Jiafeng Geng
- Department of Chemistry, Georgia State University, Atlanta, Georgia 30303, United States
| | - Andrew C Weitz
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Kednerlin Dornevil
- Department of Chemistry, Georgia State University, Atlanta, Georgia 30303, United States.,Department of Chemistry, University of Texas at San Antonio, San Antonio, Texas 78249, United States
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Aimin Liu
- Department of Chemistry, Georgia State University, Atlanta, Georgia 30303, United States.,Department of Chemistry, University of Texas at San Antonio, San Antonio, Texas 78249, United States
| |
Collapse
|
11
|
Rizzolo K, Weitz AC, Cohen SE, Drennan CL, Hendrich MP, Elliott SJ. A Stable Ferryl Porphyrin at the Active Site of Y463M BthA. J Am Chem Soc 2020; 142:11978-11982. [PMID: 32564595 DOI: 10.1021/jacs.0c04023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
BthA is a diheme enzyme that is a member of the bacterial cytochrome c peroxidase superfamily, capable of generating a highly unusual Fe(IV)Fe(IV)═O oxidation state, known to be responsible for long-range oxidative chemistry in the enzyme MauG. Here, we show that installing a canonical Met ligand in lieu of the Tyr found at the heme of MauG associated with electron transfer, results in a construct that yields an unusually stable Fe(IV)═O porphyrin at the peroxidatic heme. This state is spontaneously formed at ambient conditions using either molecular O2 or H2O2. The resulting data illustrate how a ferryl iron, with unforeseen stability, may be achieved in biology.
Collapse
Affiliation(s)
- Kimberly Rizzolo
- Boston University, Department of Chemistry, Boston, Massachusetts 02215, United States
| | - Andrew C Weitz
- Boston University, Department of Chemistry, Boston, Massachusetts 02215, United States.,Carnegie Mellon University, Department of Chemistry, Pittsburgh, Pennsylvania 15213, United States
| | - Steven E Cohen
- Massachusetts Institute of Technology, Department of Chemistry, Cambridge, Massachusetts 02139, United States
| | - Catherine L Drennan
- Massachusetts Institute of Technology, Department of Chemistry, Cambridge, Massachusetts 02139, United States.,Massachusetts Institute of Technology, Department of Biology, Cambridge, Massachusetts 02139, United States.,Howard Hughes Medical Institute, Cambridge, Massachusetts 02139, United States
| | - Michael P Hendrich
- Carnegie Mellon University, Department of Chemistry, Pittsburgh, Pennsylvania 15213, United States
| | - Sean J Elliott
- Boston University, Department of Chemistry, Boston, Massachusetts 02215, United States
| |
Collapse
|
12
|
Biswas S, Kurtz DM, Montoya SR, Hendrich MP, Bominaar EL. The Catalytic Role of a Conserved Tyrosine in Nitric Oxide-Reducing Non-heme Diiron Enzymes. ACS Catal 2020. [DOI: 10.1021/acscatal.0c01884] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Saborni Biswas
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Donald M. Kurtz
- Department of Chemistry, University of Texas at San Antonio, San Antonio, Texas 78249, United States
| | - Samuel R. Montoya
- Department of Chemistry, University of Texas at San Antonio, San Antonio, Texas 78249, United States
| | - Michael P. Hendrich
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Emile L. Bominaar
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| |
Collapse
|
13
|
Weitz AC, Biswas S, Rizzolo K, Elliott S, Bominaar EL, Hendrich MP. Electronic State of the His/Tyr-Ligated Heme of BthA by Mössbauer and DFT Analysis. Inorg Chem 2020; 59:10223-10233. [PMID: 32602712 DOI: 10.1021/acs.inorgchem.0c01349] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
The BthA protein from the microorganism Burkholderia thailandensis contains two hemes with axial His/OH2 and His/Tyr coordinations separated by the closest interheme distance of 14 Å. BthA has a similar structure and belongs to the same family of multiheme cytochrome c peroxidases as MauG, which performs long-range oxidation of the partner protein methylamine dehydrogenase. Magnetic Mössbauer spectroscopy of the diferric state of BthA corroborates previous structural work identifying a high-spin (His/OH2) peroxidatic heme and a low-spin (His/Tyr) electron transfer heme. Unlike MauG, addition of H2O2 fully converts the diferric form of BthA to a stable 2e- oxidized state, allowing a new assessment of this state. The peroxidatic heme is found to be oxidized to a canonical compound II, S = 1 oxoiron(IV) heme. In contrast, the electronic properties of the oxidized His/Tyr heme are puzzling. The isomer shift of the His/Tyr heme (0.17 mm/s) is close to that of the precursor S = 1/2 Fe3+ heme (0.21 mm/s) which suggests oxidation of the Tyr. However, the spin-dipolar hyperfine coupling constants are found here to be the same as those for the ferryl peroxidatic heme, indicating that the His/Tyr heme is also a compound II, S = 1 Fe4+ heme and ruling out oxidation of the Tyr. DFT calculations indicate that the unusually high isomer shift is not attributable to the rare axial His/Tyr heme coordination. The calculations are only compatible with spectroscopy for an unusually long Fe4+-OTyr distance, which is presumably under the influence of the protein environment of the His/Tyr heme moiety in the H2O2 oxidized state of the protein. The results offer new insights into how high valence intermediates can be tuned by the protein environment for performing long-range oxidation.
Collapse
Affiliation(s)
- Andrew C Weitz
- Department of Chemistry, Boston University, Boston, Massachusetts 02215, United States
| | - Saborni Biswas
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Kim Rizzolo
- Department of Chemistry, Boston University, Boston, Massachusetts 02215, United States
| | - Sean Elliott
- Department of Chemistry, Boston University, Boston, Massachusetts 02215, United States
| | - Emile L Bominaar
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| |
Collapse
|
14
|
Oswald VF, Lee JL, Biswas S, Weitz AC, Mittra K, Fan R, Li J, Zhao J, Hu MY, Alp EE, Bominaar EL, Guo Y, Green MT, Hendrich MP, Borovik AS. Effects of Noncovalent Interactions on High-Spin Fe(IV)-Oxido Complexes. J Am Chem Soc 2020; 142:11804-11817. [PMID: 32489096 DOI: 10.1021/jacs.0c03085] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
High-valent nonheme FeIV-oxido species are key intermediates in biological oxidation, and their properties are proposed to be influenced by the unique microenvironments present in protein active sites. Microenvironments are regulated by noncovalent interactions, such as hydrogen bonds (H-bonds) and electrostatic interactions; however, there is little quantitative information about how these interactions affect crucial properties of high valent metal-oxido complexes. To address this knowledge gap, we introduced a series of FeIV-oxido complexes that have the same S = 2 spin ground state as those found in nature and then systematically probed the effects of noncovalent interactions on their electronic, structural, and vibrational properties. The key design feature that provides access to these complexes is the new tripodal ligand [poat]3-, which contains phosphinic amido groups. An important structural aspect of [FeIVpoat(O)]- is the inclusion of an auxiliary site capable of binding a Lewis acid (LAII); we used this unique feature to further modulate the electrostatic environment around the Fe-oxido unit. Experimentally, studies confirmed that H-bonds and LAII s can interact directly with the oxido ligand in FeIV-oxido complexes, which weakens the Fe═O bond and has an impact on the electronic structure. We found that relatively large vibrational changes in the Fe-oxido unit correlate with small structural changes that could be difficult to measure, especially within a protein active site. Our work demonstrates the important role of noncovalent interactions on the properties of metal complexes, and that these interactions need to be considered when developing effective oxidants.
Collapse
Affiliation(s)
- Victoria F Oswald
- Department of Chemistry, 1102 Natural Sciences II, University of California at Irvine, Irvine, California 92697, United States
| | - Justin L Lee
- Department of Chemistry, 1102 Natural Sciences II, University of California at Irvine, Irvine, California 92697, United States
| | - Saborni Biswas
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Andrew C Weitz
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Kaustuv Mittra
- Department of Molecular Biosciences and Biochemistry, University of California at Irvine, Irvine, California 92697, United States
| | - Ruixi Fan
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Jikun Li
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Jiyong Zhao
- Advanced Photon Source, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Michael Y Hu
- Advanced Photon Source, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Esen E Alp
- Advanced Photon Source, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Emile L Bominaar
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Yisong Guo
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Michael T Green
- Department of Chemistry, 1102 Natural Sciences II, University of California at Irvine, Irvine, California 92697, United States.,Department of Molecular Biosciences and Biochemistry, University of California at Irvine, Irvine, California 92697, United States
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - A S Borovik
- Department of Chemistry, 1102 Natural Sciences II, University of California at Irvine, Irvine, California 92697, United States
| |
Collapse
|
15
|
Cope JD, Valle HU, Hall RS, Riley KM, Goel E, Biswas S, Hendrich MP, Wipf DO, Stokes SL, Emerson JP. Tuning the copper(II)/copper(I) redox potential for more robust copper-catalyzed C-N bond forming reactions. Eur J Inorg Chem 2020; 2020:1278-1285. [PMID: 33986626 DOI: 10.1002/ejic.201901269] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Complexes of copper and 1,10-phenanthroline have been utilized for organic transformations over the last 50 years. In many cases these systems are impacted by reaction conditions and perform best under an inert atmosphere. Here we explore the role the 1,10-phenanthroline ligand plays on the electronic structure and redox properties of copper coordination complexes, and what benefit related ligands may provide to enhance copper-based coupling reactions. Copper(II) triflate complexes bearing 1,10-phenanthroline (phen), ([Cu(phen)2(OTf)]OTf, 1) and oxidized derivatives of phen including [Cu(edhp)2](OTf)2 (2), [Cu(pdo)2](OTf)2 (3), [Cu(dafo)2](OTf)2 (4) were prepared and characterized. X-ray crystallographic data show these related ligands subtly impacted the coordination geometry of the copper(II) ion. Complexes 1-3 had only incremental changes to the redox properties of the copper ions, complex 4 showed a drastically different redox potential affording a remarkably air stable copper(I) complex. These complexes 1-4 were then used to catalyze the C-N bond forming cross coupling between imidazole and various boronic acid substrates, where the increased stability of the copper(I) species in complex 4 appears to better support these CEL cross couplings.
Collapse
Affiliation(s)
- James D Cope
- Department of Chemistry, Mississippi State University, Mississippi State, Mississippi, 39762, United States
| | - Henry U Valle
- Department of Chemistry, Mississippi State University, Mississippi State, Mississippi, 39762, United States
| | - Ruby S Hall
- Department of Chemistry, Mississippi State University, Mississippi State, Mississippi, 39762, United States
| | - Kathleen M Riley
- Department of Chemistry, Mississippi State University, Mississippi State, Mississippi, 39762, United States
| | - Ekta Goel
- Department of Chemistry, Mississippi State University, Mississippi State, Mississippi, 39762, United States
| | - Saborni Biswas
- Department of Chemistry, Mississippi State University, Mississippi State, Mississippi, 39762, United States
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University, Pittsburg, PA 15213, United States
| | - David O Wipf
- Department of Chemistry, Mississippi State University, Mississippi State, Mississippi, 39762, United States
| | - Sean L Stokes
- Department of Chemistry, Mississippi State University, Mississippi State, Mississippi, 39762, United States
| | - Joseph P Emerson
- Department of Chemistry, Mississippi State University, Mississippi State, Mississippi, 39762, United States
| |
Collapse
|
16
|
Liew FN, Brandys MA, Biswas S, Nguyen JN, Rahmawati M, Nevala M, Elmore BO, Hendrich MP, Kim HJ. Cytochrome c' β-Met Is a Variant in the P460 Superfamily Lacking the Heme-Lysyl Cross-Link: A Peroxidase Mimic Generating a Ferryl Intermediate. Biochemistry 2020; 59:704-716. [PMID: 31887031 DOI: 10.1021/acs.biochem.9b00810] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A defining characteristic of bacterial cytochromes (cyt's) in the P460 family is an unusual cross-link connecting the heme porphyrin to the side chain of a lysyl residue in the protein backbone. Here, via proteomics of the periplasmic fraction of the ammonia-oxidizing bacterium (AOB) Nitrosomonas europaea, we report the identification of a variant member of the P460 family that contains a methionyl residue in place of the cross-linking lysine. We formally designate this protein cytochrome "c'β-Met" to distinguish it from other members bearing different residues at this position (e.g., cyt c'β-Phe from the methane-oxidizing Methylococcus capsulatus Bath). As isolated, the monoheme cyt c'β-Met is high-spin (S = 5/2). Optical spectroscopy suggests that a cross-link is absent. Hydroxylamine, the substrate for the cross-linked cyt P460 from N. europaea, did not appreciably alter the optical spectrum of cyt c'β with up to 1000-fold excess at pH 7.5. Cyt c'β-Met did however bind 1 equiv of H2O2, and with a slight excess, Mössbauer spectroscopy indicated the formation of a semistable ferryl (FeIV═O) Compound II-like species. The corresponding electron paramagnetic resonance showed a very low intensity signal indicative of a radical at g = 2.0. Furthermore, cyt c'β-Met exhibited guaiacol-dependent peroxidase activity (kcat = 20.0 ± 1.2 s-1; KM = 2.6 ± 0.4 mM). Unlike cyt c'β-Met, cyt P460 showed evidence of heme inactivation in the presence of 2 equiv of H2O2 with no appreciable guaiacol-dependent peroxidase activity. Mutagenesis of the cross-linking lysyl residue to an alanine in cyt P460, however, reversed this lack of activity.
Collapse
Affiliation(s)
- Fong Ning Liew
- Division of Physical Sciences, Chemistry , University of Washington Bothell , Bothell , Washington 98012 , United States
| | - Marisa A Brandys
- Division of Physical Sciences, Chemistry , University of Washington Bothell , Bothell , Washington 98012 , United States
| | - Saborni Biswas
- Department of Chemistry , Carnegie Mellon University , Pittsburgh , Pennsylvania 15213 , United States
| | - Joline N Nguyen
- Division of Physical Sciences, Chemistry , University of Washington Bothell , Bothell , Washington 98012 , United States
| | - Mustika Rahmawati
- Division of Physical Sciences, Chemistry , University of Washington Bothell , Bothell , Washington 98012 , United States
| | - Michael Nevala
- Division of Physical Sciences, Chemistry , University of Washington Bothell , Bothell , Washington 98012 , United States.,Veolia Nuclear Solutions Federal Solutions , Richland , Washington 99354 , United States
| | - Bradley O Elmore
- Newport Laboratories , Worthington , Minnesota 56187 , United States
| | - Michael P Hendrich
- Department of Chemistry , Carnegie Mellon University , Pittsburgh , Pennsylvania 15213 , United States
| | - Hyung J Kim
- Division of Physical Sciences, Chemistry , University of Washington Bothell , Bothell , Washington 98012 , United States
| |
Collapse
|
17
|
Sardar S, Weitz A, Hendrich MP, Pierce BS. Outer-Sphere Tyrosine 159 within the 3-Mercaptopropionic Acid Dioxygenase S-H-Y Motif Gates Substrate-Coordination Denticity at the Non-Heme Iron Active Site. Biochemistry 2019; 58:5135-5150. [PMID: 31750652 PMCID: PMC10071547 DOI: 10.1021/acs.biochem.9b00674] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Thiol dioxygenases are non-heme mononuclear iron enzymes that catalyze the O2-dependent oxidation of free thiols (-SH) to produce the corresponding sulfinic acid (-SO2-). Regardless of the phylogenic domain, the active site for this enzyme class is typically comprised of two major features: (1) a mononuclear ferrous iron coordinated by three protein-derived histidines and (2) a conserved sequence of outer Fe-coordination-sphere amino acids (Ser-His-Tyr) spatially adjacent to the iron site (∼3 Å). Here, we utilize a promiscuous 3-mercaptopropionic acid dioxygenase cloned from Azotobacter vinelandii (Av MDO) to explore the function of the conserved S-H-Y motif. This enzyme exhibits activity with 3-mercaptopropionic acid (3mpa), l-cysteine (cys), as well as several other thiol-bearing substrates, thus making it an ideal system to study the influence of residues within the highly conserved S-H-Y motif (H157 and Y159) on substrate specificity and reactivity. The pKa values for these residues were determined by pH-dependent steady-state kinetics, and their assignments verified by comparison to H157N and Y159F variants. Complementary electron paramagnetic resonance and Mössbauer studies demonstrate a network of hydrogen bonds connecting H157-Y159 and Fe-bound ligands within the enzymatic Fe site. Crucially, these experiments suggest that the hydroxyl group of Y159 hydrogen bonds to Fe-bound NO and, by extension, Fe-bound oxygen during native catalysis. This interaction alters both the NO binding affinity and rhombicity of the 3mpa-bound iron-nitrosyl site. In addition, Fe coordination of cys is switched from thiolate only to bidentate (thiolate/amine) for the Y159F variant, indicating that perturbations within the S-H-Y proton relay network also influence cys Fe binding denticity.
Collapse
Affiliation(s)
- Sinjinee Sardar
- Department of Chemistry and Biochemistry , The University of Texas at Arlington , 700 Planetarium Place , Arlington , Texas 76019 , United States
| | - Andrew Weitz
- Department of Chemistry , Carnegie Mellon University , 4400 Fifth Avenue , Pittsburgh , Pennsylvania 15213 , United States
| | - Michael P Hendrich
- Department of Chemistry , Carnegie Mellon University , 4400 Fifth Avenue , Pittsburgh , Pennsylvania 15213 , United States
| | - Brad S Pierce
- Department of Chemistry and Biochemistry , University of Alabama , 250 Hackberry Lane , Tuscaloosa , Alabama 35487 , United States
| |
Collapse
|
18
|
Biswas S, Lau N, Borovik AS, Hendrich MP, Bominaar EL. Analysis of the Puzzling Exchange-Coupling Constants in a Series of Heterobimetallic Complexes. Inorg Chem 2019; 58:9150-9160. [DOI: 10.1021/acs.inorgchem.9b00757] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Saborni Biswas
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Nathanael Lau
- Department of Chemistry, University of California−Irvine, 1102 Natural Sciences II, Irvine, California 92697, United States
| | - A. S. Borovik
- Department of Chemistry, University of California−Irvine, 1102 Natural Sciences II, Irvine, California 92697, United States
| | - Michael P. Hendrich
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Emile L. Bominaar
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| |
Collapse
|
19
|
Warner GR, Somasundar Y, Jansen KC, Kaaret EZ, Weng C, Burton AE, Mills MR, Shen LQ, Ryabov AD, Pros G, Pintauer T, Biswas S, Hendrich MP, Taylor JA, Vom Saal FS, Collins TJ. Bioinspired, Multidisciplinary, Iterative Catalyst Design Creates the Highest Performance Peroxidase Mimics and the Field of Sustainable Ultradilute Oxidation Catalysis (SUDOC). ACS Catal 2019. [DOI: 10.1021/acscatal.9b01409] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Genoa R. Warner
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Yogesh Somasundar
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Kyle C. Jansen
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Evan Z. Kaaret
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Cindy Weng
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Abigail E. Burton
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Matthew R. Mills
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Longzhu Q. Shen
- University of Cambridge, Downing Street, Cambridge CB2 3EJ, United Kingdom
| | - Alexander D. Ryabov
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Gabrielle Pros
- Department of Chemistry and Biochemistry, 600 Forbes Avenue, Duquesne University, Pittsburgh, Pennsylvania 15282, United States
| | - Tomislav Pintauer
- Department of Chemistry and Biochemistry, 600 Forbes Avenue, Duquesne University, Pittsburgh, Pennsylvania 15282, United States
| | - Saborni Biswas
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Michael P. Hendrich
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Julia A. Taylor
- Division of Biological Sciences, University of Missouri, Columbia, Missouri 65211, United States
| | - Frederick S. Vom Saal
- Division of Biological Sciences, University of Missouri, Columbia, Missouri 65211, United States
| | - Terrence J. Collins
- Institute for Green Science, Department of Chemistry, 4400 Fifth Avenue, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| |
Collapse
|
20
|
Rizzolo K, Cohen SE, Weitz AC, López Muñoz MM, Hendrich MP, Drennan CL, Elliott SJ. A widely distributed diheme enzyme from Burkholderia that displays an atypically stable bis-Fe(IV) state. Nat Commun 2019; 10:1101. [PMID: 30846684 PMCID: PMC6405878 DOI: 10.1038/s41467-019-09020-4] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2018] [Accepted: 02/15/2019] [Indexed: 11/09/2022] Open
Abstract
Bacterial diheme peroxidases represent a diverse enzyme family with functions that range from hydrogen peroxide (H2O2) reduction to post-translational modifications. By implementing a sequence similarity network (SSN) of the bCCP_MauG superfamily, we present the discovery of a unique diheme peroxidase BthA conserved in all Burkholderia. Using a combination of magnetic resonance, near-IR and Mössbauer spectroscopies and electrochemical methods, we report that BthA is capable of generating a bis-Fe(IV) species previously thought to be a unique feature of the diheme enzyme MauG. However, BthA is not MauG-like in that it catalytically converts H2O2 to water, and a 1.54-Å resolution crystal structure reveals striking differences between BthA and other superfamily members, including the essential residues for both bis-Fe(IV) formation and H2O2 turnover. Taken together, we find that BthA represents a previously undiscovered class of diheme enzymes, one that stabilizes a bis-Fe(IV) state and catalyzes H2O2 turnover in a mechanistically distinct manner.
Collapse
Affiliation(s)
- Kimberly Rizzolo
- Boston University, Department of Chemistry, Boston, MA, 02215, USA
| | - Steven E Cohen
- Massachusetts Institute of Technology, Department of Chemistry, Cambridge, MA, 02139, USA
| | - Andrew C Weitz
- Carnegie Mellon University, Department of Chemistry, Pittsburgh, PA, 15213, USA
| | | | - Michael P Hendrich
- Carnegie Mellon University, Department of Chemistry, Pittsburgh, PA, 15213, USA
| | - Catherine L Drennan
- Massachusetts Institute of Technology, Department of Chemistry, Cambridge, MA, 02139, USA
- Massachusetts Institute of Technology, Department of Biology, Cambridge, MA, 02139, USA
- Howard Hughes Medical Institute, Cambridge, MA, 02139, USA
| | - Sean J Elliott
- Boston University, Department of Chemistry, Boston, MA, 02215, USA.
| |
Collapse
|
21
|
Abstract
High-valent Fe-OH species are important intermediates in hydroxylation chemistry. Such complexes have been implicated in mechanisms of oxygen-activating enzymes and have thus far been observed in Compound II of sulfur-ligated heme enzymes like cytochrome P450. Attempts to synthetically model such species have thus far seen relatively little success. Here, the first synthetic FeIVOH n complex has been generated and spectroscopically characterized as either [LFeIVOH]- or [LFeIVOH2]0, where H4L = Me4C2(NHCOCMe2NHCO)2CMe2 is a variant of a tetra-amido macrocyclic ligand (TAML). The steric bulk provided by the replacement of the aryl group with the -CMe2CMe2- unit in this TAML variant prevents dimerization in all oxidation states over a wide pH range, thus allowing the generation of FeIVOH n in near quantitative yield from oxidation of the [LFeIIIOH2]- precursor.
Collapse
Affiliation(s)
- Andrew C Weitz
- Department of Chemistry , Carnegie Mellon University , 4400 Fifth Avenue , Pittsburgh , Pennsylvania 15213 , United States
| | - Matthew R Mills
- Department of Chemistry , Carnegie Mellon University , 4400 Fifth Avenue , Pittsburgh , Pennsylvania 15213 , United States
| | - Alexander D Ryabov
- Department of Chemistry , Carnegie Mellon University , 4400 Fifth Avenue , Pittsburgh , Pennsylvania 15213 , United States
| | - Terrence J Collins
- Department of Chemistry , Carnegie Mellon University , 4400 Fifth Avenue , Pittsburgh , Pennsylvania 15213 , United States
| | - Yisong Guo
- Department of Chemistry , Carnegie Mellon University , 4400 Fifth Avenue , Pittsburgh , Pennsylvania 15213 , United States
| | - Emile L Bominaar
- Department of Chemistry , Carnegie Mellon University , 4400 Fifth Avenue , Pittsburgh , Pennsylvania 15213 , United States
| | - Michael P Hendrich
- Department of Chemistry , Carnegie Mellon University , 4400 Fifth Avenue , Pittsburgh , Pennsylvania 15213 , United States
| |
Collapse
|
22
|
Weitz AC, Giri N, Frederick RE, Kurtz DM, Bominaar EL, Hendrich MP. Spectroscopy and DFT Calculations of Flavo-Diiron Nitric Oxide Reductase Identify Bridging Structures of NO-Coordinated Diiron Intermediates. ACS Catal 2018; 8:11704-11715. [PMID: 31263628 PMCID: PMC6602092 DOI: 10.1021/acscatal.8b03051] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Flavo-diiron proteins (FDPs) are widespread in anaerobic bacteria, archaea, and protozoa, where they serve as the terminal components of dioxygen and nitric oxide reductive scavenging pathways. FDPs contain an N,O-ligated diiron site adjacent to a flavin mononucleotide (FMN) cofactor. The diiron site is structurally similar to those in hemerythrin, ribonucleotide reductase, and methane monooxygenase. However, only FDPs turn over NO to N2O at significant rates and yields. Previous studies revealed sequential binding of two NO molecules to the diferrous site, forming mono- and dinitrosyl intermediates leading to N2O formation. In the present work, these mono- and dinitrosyl intermediates have been characterized by EPR and Mössbauer spectroscopies and DFT calculations. Our results show that the iron proximal to the cofactor binds the first NO to form the diiron mononitrosyl complex, implying the iron distal to the FMN binds the second NO to form the diiron dinitrosyl intermediate. The exchange-coupling constants, J (H = JS1·S2), were found to differ substantially, +17 cm-1 for the diiron mononitrosyl and +60 cm-1 for the diiron dinitrosyl. Notwithstanding this large difference, our findings indicate retention of at least one hydroxo bridge throughout the NOR catalytic cycle. The Mossbauer hyperfine parameters and DFT calculations confirmed a semibridging NO- ligand in the mononitrosyl intermediate that lowers the exchange parameter. The DFT calculations on the dinitrosyl intermediate suggest a contribution to J from direct exchange between the S = 1 spins on the NO- ligands, which could initiate N-N bond formation. Our results provide insight into why FDPs are the only known nonheme diiron enzymes that competently turn over NO to N2O.
Collapse
Affiliation(s)
- Andrew C. Weitz
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Nitai Giri
- Department of Chemistry, University of Texas at San Antonio, San Antonio, Texas 78249, United States
| | - Rosanne E. Frederick
- Department of Chemistry, University of Texas at San Antonio, San Antonio, Texas 78249, United States
| | - Donald M. Kurtz
- Department of Chemistry, University of Texas at San Antonio, San Antonio, Texas 78249, United States
| | - Emile L. Bominaar
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Michael P. Hendrich
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| |
Collapse
|
23
|
Weitz AC, Hill EA, Oswald VF, Bominaar EL, Borovik AS, Hendrich MP, Guo Y. Rücktitelbild: Probing Hydrogen Bonding Interactions to Iron‐Oxido/Hydroxido Units by
57
Fe Nuclear Resonance Vibrational Spectroscopy (Angew. Chem. 49/2018). Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201812786] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Andrew C. Weitz
- Department of ChemistryCarnegie Mellon University Pittsburgh PA 15213 USA
| | - Ethan A. Hill
- Department of ChemistryUniversity of California Irvine CA 92697 USA
| | | | - Emile L. Bominaar
- Department of ChemistryCarnegie Mellon University Pittsburgh PA 15213 USA
| | | | | | - Yisong Guo
- Department of ChemistryCarnegie Mellon University Pittsburgh PA 15213 USA
| |
Collapse
|
24
|
Weitz AC, Hill EA, Oswald VF, Bominaar EL, Borovik AS, Hendrich MP, Guo Y. Probing Hydrogen Bonding Interactions to Iron-Oxido/Hydroxido Units by 57 Fe Nuclear Resonance Vibrational Spectroscopy. Angew Chem Int Ed Engl 2018; 57:16010-16014. [PMID: 30353620 PMCID: PMC6263813 DOI: 10.1002/anie.201810227] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2018] [Indexed: 11/11/2022]
Abstract
Hydrogen bonds (H-bonds) have been shown to modulate the chemical reactivities of iron centers in iron-containing dioxygen-activating enzymes and model complexes. However, few examples are available that investigate how systematic changes in intramolecular H-bonds within the secondary coordination sphere influence specific properties of iron intermediates, such as iron-oxido/hydroxido species. Here, we used 57 Fe nuclear resonance vibrational spectroscopy (NRVS) to probe the Fe-O/OH vibrations in a series of FeIII -hydroxido and FeIV/III -oxido complexes with varying H-bonding networks but having similar trigonal bipyramidal primary coordination spheres. The data show that even subtle changes in the H-bonds to the Fe-O/OH units result in significant changes in their vibrational frequencies, thus demonstrating the utility of NRVS in studying the effect of the secondary coordination sphere to the reactivities of iron complexes.
Collapse
Affiliation(s)
- Andrew C Weitz
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, PA, 15213, USA
| | - Ethan A Hill
- Department of Chemistry, University of California, Irvine, CA, 92697, USA
| | - Victoria F Oswald
- Department of Chemistry, University of California, Irvine, CA, 92697, USA
| | - Emile L Bominaar
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, PA, 15213, USA
| | - Andrew S Borovik
- Department of Chemistry, University of California, Irvine, CA, 92697, USA
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, PA, 15213, USA
| | - Yisong Guo
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, PA, 15213, USA
| |
Collapse
|
25
|
Weitz AC, Hill EA, Oswald VF, Bominaar EL, Borovik AS, Hendrich MP, Guo Y. Probing Hydrogen Bonding Interactions to Iron‐Oxido/Hydroxido Units by
57
Fe Nuclear Resonance Vibrational Spectroscopy. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201810227] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Andrew C. Weitz
- Department of Chemistry Carnegie Mellon University Pittsburgh PA 15213 USA
| | - Ethan A. Hill
- Department of Chemistry University of California Irvine CA 92697 USA
| | | | - Emile L. Bominaar
- Department of Chemistry Carnegie Mellon University Pittsburgh PA 15213 USA
| | - Andrew S. Borovik
- Department of Chemistry University of California Irvine CA 92697 USA
| | | | - Yisong Guo
- Department of Chemistry Carnegie Mellon University Pittsburgh PA 15213 USA
| |
Collapse
|
26
|
Weitz AC, Hill EA, Oswald VF, Bominaar EL, Borovik AS, Hendrich MP, Guo Y. Back Cover: Probing Hydrogen Bonding Interactions to Iron‐Oxido/Hydroxido Units by
57
Fe Nuclear Resonance Vibrational Spectroscopy (Angew. Chem. Int. Ed. 49/2018). Angew Chem Int Ed Engl 2018. [DOI: 10.1002/anie.201812786] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Andrew C. Weitz
- Department of ChemistryCarnegie Mellon University Pittsburgh PA 15213 USA
| | - Ethan A. Hill
- Department of ChemistryUniversity of California Irvine CA 92697 USA
| | | | - Emile L. Bominaar
- Department of ChemistryCarnegie Mellon University Pittsburgh PA 15213 USA
| | | | | | - Yisong Guo
- Department of ChemistryCarnegie Mellon University Pittsburgh PA 15213 USA
| |
Collapse
|
27
|
Oswald VF, Weitz AC, Biswas S, Ziller JW, Hendrich MP, Borovik AS. Manganese-Hydroxido Complexes Supported by a Urea/Phosphinic Amide Tripodal Ligand. Inorg Chem 2018; 57:13341-13350. [PMID: 30299920 DOI: 10.1021/acs.inorgchem.8b01886] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Hydrogen bonds (H-bonds) within the secondary coordination sphere are often invoked as essential noncovalent interactions that lead to productive chemistry in metalloproteins. Incorporating these types of effects within synthetic systems has proven a challenge in molecular design that often requires the use of rigid organic scaffolds to support H-bond donors or acceptors. We describe the preparation and characterization of a new hybrid tripodal ligand ([H2pout]3-) that contains two monodeprotonated urea groups and one phosphinic amide. The urea groups serve as H-bond donors, while the phosphinic amide group serves as a single H-bond acceptor. The [H2pout]3- ligand was utilized to stabilize a series of Mn-hydroxido complexes in which the oxidation state of the metal center ranges from 2+ to 4+. The molecular structure of the MnIII-OH complex demonstrates that three intramolecular H-bonds involving the hydroxido ligand are formed. Additional evidence for the formation of intramolecular H-bonds was provided by vibrational spectroscopy in which the energy of the O-H vibration supports its assignment as an H-bond donor. The stepwise oxidation of [MnIIH2pout(OH)]2- to its higher oxidized analogs was further substantiated by electrochemical measurements and results from electronic absorbance and electron paramagnetic resonance spectroscopies. Our findings illustrate the utility of controlling both the primary and secondary coordination spheres to achieve structurally similar Mn-OH complexes with varying oxidation states.
Collapse
Affiliation(s)
- Victoria F Oswald
- Department of Chemistry , University of California-Irvine , 1102 Natural Sciences II , Irvine , California 92697 , United States
| | - Andrew C Weitz
- Department of Chemistry , Carnegie Mellon University , Pittsburgh , Pennsylvania 15213 , United States
| | - Saborni Biswas
- Department of Chemistry , Carnegie Mellon University , Pittsburgh , Pennsylvania 15213 , United States
| | - Joseph W Ziller
- Department of Chemistry , University of California-Irvine , 1102 Natural Sciences II , Irvine , California 92697 , United States
| | - Michael P Hendrich
- Department of Chemistry , Carnegie Mellon University , Pittsburgh , Pennsylvania 15213 , United States
| | - A S Borovik
- Department of Chemistry , University of California-Irvine , 1102 Natural Sciences II , Irvine , California 92697 , United States
| |
Collapse
|
28
|
Cook SA, Bogart JA, Levi N, Weitz AC, Moore C, Rheingold AL, Ziller JW, Hendrich MP, Borovik AS. Mononuclear complexes of a tridentate redox-active ligand with sulfonamido groups: structure, properties, and reactivity. Chem Sci 2018; 9:6540-6547. [PMID: 30310585 PMCID: PMC6115676 DOI: 10.1039/c7sc05445a] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2017] [Accepted: 06/30/2018] [Indexed: 12/16/2022] Open
Abstract
The design of molecular complexes of earth-abundant first-row transition metals that can catalyze multi-electron C-H bond activation processes is of interest for achieving efficient, low-cost syntheses of target molecules. To overcome the propensity of these metals to perform single-electron processes, redox-active ligands have been utilized to provide additional electron equivalents. Herein, we report the synthesis of a novel redox active ligand, [ibaps]3-, which binds to transition metals such as FeII and CoII in a meridional fashion through the three anionic nitrogen atoms and provides additional coordination sites for other ligands. In this study, the neutral bidentate ligand 2,2'-bipyridine (bpy) was used to complete the coordination spheres of the metal ions and form NEt4[MII(ibaps)bpy] (M = Fe (1) or Co (1-Co)) salts. The FeII salt exhibited rich electrochemical properties and could be chemically oxidized by 1 and 2 equiv. of ferrocenium to form singly and doubly oxidized species, respectively. The reactivity of 1 towards intramolecular C-H bond amination of aryl azides at benzylic and aliphatic carbon centers was explored, and moderate to good yields of the resulting indoline products were obtained.
Collapse
Affiliation(s)
- Sarah A Cook
- Department of Chemistry , University of California-Irvine , 1102 Natural Sciences II , Irvine , California 92697 , USA .
| | - Justin A Bogart
- Department of Chemistry , University of California-Irvine , 1102 Natural Sciences II , Irvine , California 92697 , USA .
| | - Noam Levi
- Department of Chemistry , University of California-Irvine , 1102 Natural Sciences II , Irvine , California 92697 , USA .
| | - Andrew C Weitz
- Department of Chemistry , Carnegie Melon University , Pittsburgh , Pennsylvania 15213 , USA
| | - Curtis Moore
- Department of Chemistry and Biochemistry , University of California-San Diego , San Diego , California 92093 , USA
| | - Arnold L Rheingold
- Department of Chemistry and Biochemistry , University of California-San Diego , San Diego , California 92093 , USA
| | - Joseph W Ziller
- Department of Chemistry , University of California-Irvine , 1102 Natural Sciences II , Irvine , California 92697 , USA .
| | - Michael P Hendrich
- Department of Chemistry , Carnegie Melon University , Pittsburgh , Pennsylvania 15213 , USA
| | - A S Borovik
- Department of Chemistry , University of California-Irvine , 1102 Natural Sciences II , Irvine , California 92697 , USA .
| |
Collapse
|
29
|
Ellis WC, Ryabov AD, Fischer A, Hayden JA, Shen LQ, Bominaar EL, Hendrich MP, Collins TJ. Bis phenylene flattened 13-membered tetraamide macrocyclic ligand (TAML) for square planar cobalt(III). J COORD CHEM 2018; 71:1822-1836. [PMID: 31249429 DOI: 10.1080/00958972.2018.1487060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
Abstract
The preparation, characterization, and evaluation of a cobalt(III) complex with 13-membered tetraamide macrocyclic ligand (TAML) is described. This is a square-planar (X-ray) S = 1 paramagnetic (1H NMR) compound, which becomes an S = 0 diamagnetic octahedral species in excess d5-pyridine. Its one-electron oxidation at an electrode is fully reversible with the lowest E 1/2 value (0.66 V vs SCE) among all investigated CoIII TAML complexes. The oxidation results in a neutral blue species which is consistent with a CoIII/radical-cation ligand. The ease of oxidation is likely due to the two benzene rings incorporated in the ligand structure (whereas there is just one in many other CoIII TAMLs). The oxidized neutral species are unexpectedly EPR silent, presumably due to the π-stacking aggregation. However, they display eight-line hyperfine patterns in the presence of excess of 4-tert-butylpyridine or 4-tert-butyl isonitrile. The EPR spectra are more consistent with the CoIII/radical-cation ligand formulation rather than with a CoIV complex. Attempts to synthesize a similar vanadium complex under the same conditions as for cobalt using [VVO(OCHMe2)3] were not successful. TAML-free decavanadate was isolated instead.
Collapse
Affiliation(s)
- W Chadwick Ellis
- Department of Chemistry, Carnegie Mellon university, Pittsburgh, PA, USA
| | - Alexander D Ryabov
- Department of Chemistry, Carnegie Mellon university, Pittsburgh, PA, USA
| | - Andreas Fischer
- Inorganic Chemistry, department of Chemistry, Royal institute of Technology, Stockholm, Sweden
| | - Joshua A Hayden
- Department of Chemistry, Carnegie Mellon university, Pittsburgh, PA, USA
| | - Longzhu Q Shen
- Department of Chemistry, Carnegie Mellon university, Pittsburgh, PA, USA
| | - Emile L Bominaar
- Department of Chemistry, Carnegie Mellon university, Pittsburgh, PA, USA
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon university, Pittsburgh, PA, USA
| | - Terrence J Collins
- Department of Chemistry, Carnegie Mellon university, Pittsburgh, PA, USA
| |
Collapse
|
30
|
Sano Y, Lau N, Weitz AC, Ziller JW, Hendrich MP, Borovik AS. Models for Unsymmetrical Active Sites in Metalloproteins: Structural, Redox, and Magnetic Properties of Bimetallic Complexes with M II-(μ-OH)-Fe III Cores. Inorg Chem 2017; 56:14118-14128. [PMID: 29112385 DOI: 10.1021/acs.inorgchem.7b02230] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Bimetallic complexes are important sites in metalloproteins but are often difficult to prepare synthetically. We have previously introduced an approach to form discrete bimetallic complexes with MII-(μ-OH)-FeIII (MII = Mn, Fe) cores using the tripodal ligand N,N',N″-[2,2',2″-nitrilotris(ethane-2,1-diyl)]tris(2,4,6-trimethylbenzenesulfonamido) ([MST]3-). This series is extended to include the rest of the late 3d transition metal ions (MII = Co, Ni, Cu, Zn). All of the bimetallic complexes have similar spectroscopic and structural properties that reflect little change despite varying the MII centers. Magnetic studies performed on the complexes in solution using electron paramagnetic resonance spectroscopy showed that the observed spin states varied incrementally from S = 0 through S = 5/2; these results are consistent with antiferromagnetic coupling between the high-spin MII and FeIII centers. However, the difference in the MII ion occupancy yielded only slight changes in the magnetic exchange coupling strength, and all complexes had J values ranging from +26(4) to +35(3) cm-1.
Collapse
Affiliation(s)
- Yohei Sano
- Department of Chemistry, University of California-Irvine , 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Nathanael Lau
- Department of Chemistry, University of California-Irvine , 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Andrew C Weitz
- Department of Chemistry, Carnegie Mellon University , Pittsburgh, Pennsylvania 15213, United States
| | - Joseph W Ziller
- Department of Chemistry, University of California-Irvine , 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University , Pittsburgh, Pennsylvania 15213, United States
| | - A S Borovik
- Department of Chemistry, University of California-Irvine , 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| |
Collapse
|
31
|
Weitz AC, Giri N, Caranto JD, Kurtz DM, Bominaar EL, Hendrich MP. Spectroscopy and DFT Calculations of a Flavo-diiron Enzyme Implicate New Diiron Site Structures. J Am Chem Soc 2017; 139:12009-12019. [PMID: 28756660 PMCID: PMC5898632 DOI: 10.1021/jacs.7b06546] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Flavo-diiron proteins (FDPs) are non-heme iron containing enzymes that are widespread in anaerobic bacteria, archaea, and protozoa, serving as the terminal components to dioxygen and nitric oxide reductive scavenging pathways in these organisms. FDPs contain a dinuclear iron active site similar to that in hemerythrin, ribonucleotide reductase, and methane monooxygenase, all of which can bind NO and O2. However, only FDP competently turns over NO to N2O. Here, EPR and Mössbauer spectroscopies allow electronic characterization of the diferric and diferrous species of FDP. The exchange-coupling constant J (Hex = JS1·S2) was found to increase from +20 cm-1 to +32 cm-1 upon reduction of the diferric to the diferrous species, indicative of (1) at least one hydroxo bridge between the iron ions for both states and (2) a change to the diiron core structure upon reduction. In comparison to characterized diiron proteins and synthetic complexes, the experimental values were consistent with a dihydroxo bridged diferric core, which loses one hydroxo bridge upon reduction. DFT calculations of these structures gave values of J and Mössbauer parameters in agreement with experiment. Although the crystal structure shows a hydrogen bond between the iron bound aspartate and the bridging solvent molecule, the DFT calculations of structures consistent with the crystal structure gave calculated values of J incompatible with the spectroscopic results. We conclude that the crystal structure of the diferric state does not represent the frozen solution structure and that a mono-μ-hydroxo diferrous species is the catalytically functional state that reacts with NO and O2. The new EPR spectroscopic probe of the diferric state indicated that the diferric structure of FDP prior to and immediately after turnover with NO are flavin mononucleotide (FMN) dependent, implicating an additional proton transfer role for FMN in turnover of NO.
Collapse
Affiliation(s)
- Andrew C. Weitz
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Nitai Giri
- Department of Chemistry, University of Texas at San Antonio, San Antonio, Texas 78249, United States
| | - Jonathan D. Caranto
- Department of Chemistry, University of Texas at San Antonio, San Antonio, Texas 78249, United States
| | - Donald M. Kurtz
- Department of Chemistry, University of Texas at San Antonio, San Antonio, Texas 78249, United States
| | - Emile L. Bominaar
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Michael P. Hendrich
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| |
Collapse
|
32
|
Sui X, Weitz AC, Farquhar ER, Badiee M, Banerjee S, von Lintig J, Tochtrop GP, Palczewski K, Hendrich MP, Kiser PD. Structure and Spectroscopy of Alkene-Cleaving Dioxygenases Containing an Atypically Coordinated Non-Heme Iron Center. Biochemistry 2017; 56:2836-2852. [PMID: 28493664 DOI: 10.1021/acs.biochem.7b00251] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Carotenoid cleavage oxygenases (CCOs) are non-heme iron enzymes that catalyze scission of alkene groups in carotenoids and stilbenoids to form biologically important products. CCOs possess a rare four-His iron center whose resting-state structure and interaction with substrates are incompletely understood. Here, we address this knowledge gap through a comprehensive structural and spectroscopic study of three phyletically diverse CCOs. The crystal structure of a fungal stilbenoid-cleaving CCO, CAO1, reveals strong similarity between its iron center and those of carotenoid-cleaving CCOs, but with a markedly different substrate-binding cleft. These enzymes all possess a five-coordinate high-spin Fe(II) center with resting-state Fe-His bond lengths of ∼2.15 Å. This ligand set generates an iron environment more electropositive than those of other non-heme iron dioxygenases as observed by Mössbauer isomer shifts. Dioxygen (O2) does not coordinate iron in the absence of substrate. Substrates bind away (∼4.7 Å) from the iron and have little impact on its electronic structure, thus excluding coordination-triggered O2 binding. However, substrate binding does perturb the spectral properties of CCO Fe-NO derivatives, indicating proximate organic substrate and O2-binding sites, which might influence Fe-O2 interactions. Together, these data provide a robust description of the CCO iron center and its interactions with substrates and substrate mimetics that illuminates commonalities as well as subtle and profound structural differences within the CCO family.
Collapse
Affiliation(s)
- Xuewu Sui
- Department of Pharmacology, School of Medicine, Case Western Reserve University , 10900 Euclid Avenue, Cleveland, Ohio 44106, United States
| | - Andrew C Weitz
- Department of Chemistry, Carnegie Mellon University , 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Erik R Farquhar
- National Synchrotron Light Source-II, Brookhaven National Laboratory , Upton, New York 11973, United States.,Center for Proteomics and Bioinformatics, Center for Synchrotron Biosciences, School of Medicine, Case Western Reserve University , 10900 Euclid Avenue, Cleveland, Ohio 44106-4988, United States
| | - Mohsen Badiee
- Department of Chemistry, Case Western Reserve University , 2080 Adelbert Road, Cleveland, Ohio 44106, United States
| | - Surajit Banerjee
- Department of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14850, United States.,Northeastern Collaborative Access Team, Argonne National Laboratory , Argonne, Illinois 60439, United States
| | - Johannes von Lintig
- Department of Pharmacology, School of Medicine, Case Western Reserve University , 10900 Euclid Avenue, Cleveland, Ohio 44106, United States
| | - Gregory P Tochtrop
- Department of Chemistry, Case Western Reserve University , 2080 Adelbert Road, Cleveland, Ohio 44106, United States
| | - Krzysztof Palczewski
- Department of Pharmacology, School of Medicine, Case Western Reserve University , 10900 Euclid Avenue, Cleveland, Ohio 44106, United States.,Cleveland Center for Membrane and Structural Biology, Case Western Reserve University , 1819 East 101st Street, Cleveland, Ohio 44106, United States
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University , 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Philip D Kiser
- Department of Pharmacology, School of Medicine, Case Western Reserve University , 10900 Euclid Avenue, Cleveland, Ohio 44106, United States.,Research Service, Louis Stokes Cleveland VA Medical Center , 10701 East Boulevard, Cleveland, Ohio 44106, United States
| |
Collapse
|
33
|
Mills MR, Weitz AC, Zhang DZ, Hendrich MP, Ryabov AD, Collins TJ. A "Beheaded" TAML Activator: A Compromised Catalyst that Emphasizes the Linearity between Catalytic Activity and pK a. Inorg Chem 2016; 55:12263-12269. [PMID: 27934426 DOI: 10.1021/acs.inorgchem.6b01988] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Studies of the new tetra-amido macrocyclic ligand (TAML) activator [FeIII{(Me2CNCOCMe2NCO)2CMe2}OH2]- (4) in water in the pH range of 2-13 suggest its pseudo-octahedral geometry with two nonequivalent axial H2O ligands and revealed (i) the anticipated basic drift of the first pKa of water to 11.38 due to four electron-donating methyl groups alongside (ii) its counterintuitive enhanced resistance to acid-induced iron(III) ejection from the macrocycle. The catalytic activity of 4 in the oxidation of Orange II (S) by H2O2 in the pH range of 7-12 is significantly lower than that of previously reported TAML activators, though it follows the common rate law (v/[FeIII] = kIkII[H2O2][S]/(kI[H2O2] + kII[S]) and typical pH profiles for kI and kII. At pH 7 and 25 °C the rate constants kI and kII equal 0.63 ± 0.02 and 1.19 ± 0.03 M-1 s-1, respectively. With these new values for pKa, kI and kII establishing new high and low limits, respectively, the rate constants kI and kII were correlated with pKa values of all TAML activators. The relations log k = log k0 + α × pKa were established with log k0 = 13 ± 2 and 20 ± 4 and α = -1.1 ± 0.2 and -1.8 ± 0.4 for kI and kII, respectively. Thus, the reactivity of TAML activators across four generations of catalysts is predictable through their pKa values.
Collapse
Affiliation(s)
- Matthew R Mills
- Department of Chemistry, Carnegie Mellon University , 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Andrew C Weitz
- Department of Chemistry, Carnegie Mellon University , 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - David Z Zhang
- Department of Chemistry, Carnegie Mellon University , 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University , 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Alexander D Ryabov
- Department of Chemistry, Carnegie Mellon University , 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Terrence J Collins
- Department of Chemistry, Carnegie Mellon University , 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| |
Collapse
|
34
|
Abstract
The unique properties of entirely aliphatic TAML activator [FeIII{(Me2CNCOCMe2NCO)2CMe2}OH2]- (3), namely the increased steric bulk of the ligand and the unmatched resistance to the acid-induced demetalation, enables the generation of high-valent iron derivatives in pure water at any pH. An iron(V)oxo species is readily produced with NaClO at pH values from 2 to 10.6 without any observable intermediate. This is the first reported example of iron(V)oxo formed in pure water. At pH 13, iron(V)oxo is not formed and NaClO oxidizes 3 to an iron(IV)oxo derivative.
Collapse
Affiliation(s)
- Matthew R Mills
- Department of Chemistry, Carnegie Mellon University , 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Andrew C Weitz
- Department of Chemistry, Carnegie Mellon University , 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University , 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Alexander D Ryabov
- Department of Chemistry, Carnegie Mellon University , 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Terrence J Collins
- Department of Chemistry, Carnegie Mellon University , 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| |
Collapse
|
35
|
Hill EA, Weitz AC, Onderko E, Romero-Rivera A, Guo Y, Swart M, Bominaar EL, Green MT, Hendrich MP, Lacy DC, Borovik AS. Reactivity of an Fe IV-Oxo Complex with Protons and Oxidants. J Am Chem Soc 2016; 138:13143-13146. [PMID: 27647293 PMCID: PMC5110122 DOI: 10.1021/jacs.6b07633] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
High-valent Fe-OH species are often invoked as key intermediates but have only been observed in Compound II of cytochrome P450s. To further address the properties of non-heme FeIV-OH complexes, we demonstrate the reversible protonation of a synthetic FeIV-oxo species containing a tris-urea tripodal ligand. The same protonated FeIV-oxo species can be prepared via oxidation, suggesting that a putative FeV-oxo species was initially generated. Computational, Mössbauer, XAS, and NRVS studies indicate that protonation of the FeIV-oxo complex most likely occurs on the tripodal ligand, which undergoes a structural change that results in the formation of a new intramolecular H-bond with the oxido ligand that aids in stabilizing the protonated adduct. We suggest that similar protonated high-valent Fe-oxo species may occur in the active sites of proteins. This finding further argues for caution when assigning unverified high-valent Fe-OH species to mechanisms.
Collapse
Affiliation(s)
- Ethan A. Hill
- Department of Chemistry, University of California-Irvine, 1102 Natural Sciences II, Irvine, CA 92697
| | - Andrew C. Weitz
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, PA 15213
| | - Elizabeth Onderko
- Department of Chemistry, Pennsylvania State University, University Park, PA 16802
| | - Adrian Romero-Rivera
- Institut de Química Computacional i Catàlisi & Dept. Química, Universitat de Girona, 17003, Spain
| | - Yisong Guo
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, PA 15213
| | - Marcel Swart
- Institut de Química Computacional i Catàlisi & Dept. Química, Universitat de Girona, 17003, Spain
- ICREA, Pg. Lluís Companys 23, 08010, Barcelona, Spain
| | - Emile L. Bominaar
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, PA 15213
| | - Michael T. Green
- Department of Chemistry, University of California-Irvine, 1102 Natural Sciences II, Irvine, CA 92697
- Department of Chemistry, Pennsylvania State University, University Park, PA 16802
| | | | - David C. Lacy
- Department of Chemistry, University of California-Irvine, 1102 Natural Sciences II, Irvine, CA 92697
| | - A. S. Borovik
- Department of Chemistry, University of California-Irvine, 1102 Natural Sciences II, Irvine, CA 92697
| |
Collapse
|
36
|
Abstract
Cupredoxins are electron-transfer proteins that have active sites containing a mononuclear Cu center with an unusual trigonal monopyramidal structure (Type 1 Cu). A single Cu-Scys bond is present within the trigonal plane that is responsible for its unique physical properties. We demonstrate that a cysteine-containing variant of streptavidin (Sav) can serve as a protein host to model the structure and properties of Type 1 Cu sites. A series of artificial Cu proteins are described that rely on Sav and a series of biotinylated synthetic Cu complexes. Optical and EPR measurements highlight the presence of a Cu-Scys bond, and XRD analysis provides structural evidence. We further provide evidence that changes in the linker between the biotin and Cu complex within the synthetic constructs allows for small changes in the placement of Cu centers within Sav that have dramatic effects on the structural and physical properties of the resulting artificial metalloproteins. These findings highlight the utility of the biotin-Sav technology as an approach for simulating active sites of metalloproteins.
Collapse
Affiliation(s)
- Samuel I Mann
- Department of Chemistry, University of California-Irvine , 1102 Natural Sciences II, Irvine, California 92697, United States
| | - Tillmann Heinisch
- Department of Chemistry, University of Basel , Spitalstrasse 51, CH-4056 Basel, Switzerland
| | - Andrew C Weitz
- Department of Chemistry, Carnegie Mellon University , Pittsburgh, Pennsylvania 15213, United States
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University , Pittsburgh, Pennsylvania 15213, United States
| | - Thomas R Ward
- Department of Chemistry, University of Basel , Spitalstrasse 51, CH-4056 Basel, Switzerland
| | - A S Borovik
- Department of Chemistry, University of California-Irvine , 1102 Natural Sciences II, Irvine, California 92697, United States
| |
Collapse
|
37
|
Tang LL, Gunderson WA, Weitz AC, Hendrich MP, Ryabov AD, Collins TJ. Activation of Dioxygen by a TAML Activator in Reverse Micelles: Characterization of an Fe(III)Fe(IV) Dimer and Associated Catalytic Chemistry. J Am Chem Soc 2015; 137:9704-15. [PMID: 26161504 DOI: 10.1021/jacs.5b05229] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Iron TAML activators of peroxides are functional catalase-peroxidase mimics. Switching from hydrogen peroxide (H2O2) to dioxygen (O2) as the primary oxidant was achieved by using a system of reverse micelles of Aerosol OT (AOT) in n-octane. Hydrophilic TAML activators are localized in the aqueous microreactors of reverse micelles where water is present in much lower abundance than in bulk water. n-Octane serves as a proximate reservoir supplying O2 to result in partial oxidation of Fe(III) to Fe(IV)-containing species, mostly the Fe(III)Fe(IV) (major) and Fe(IV)Fe(IV) (minor) dimers which coexist with the Fe(III) TAML monomeric species. The speciation depends on the pH and the degree of hydration w0, viz., the amount of water in the reverse micelles. The previously unknown Fe(III)Fe(IV) dimer has been characterized by UV-vis, EPR, and Mössbauer spectroscopies. Reactive electron donors such as NADH, pinacyanol chloride, and hydroquinone undergo the TAML-catalyzed oxidation by O2. The oxidation of NADH, studied in most detail, is much faster at the lowest degree of hydration w0 (in "drier micelles") and is accelerated by light through NADH photochemistry. Dyes that are more resistant to oxidation than pinacyanol chloride (Orange II, Safranine O) are not oxidized in the reverse micellar media. Despite the limitation of low reactivity, the new systems highlight an encouraging step in replacing TAML peroxidase-like chemistry with more attractive dioxygen-activation chemistry.
Collapse
Affiliation(s)
- Liang L Tang
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - William A Gunderson
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Andrew C Weitz
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Alexander D Ryabov
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Terrence J Collins
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| |
Collapse
|
38
|
Petasis DT, Hendrich MP. Quantitative Interpretation of Multifrequency Multimode EPR Spectra of Metal Containing Proteins, Enzymes, and Biomimetic Complexes. Methods Enzymol 2015; 563:171-208. [PMID: 26478486 DOI: 10.1016/bs.mie.2015.06.025] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
Abstract
Electron paramagnetic resonance (EPR) spectroscopy has long been a primary method for characterization of paramagnetic centers in materials and biological complexes. Transition metals in biological complexes have valence d-orbitals that largely define the chemistry of the metal centers. EPR spectra are distinctive for metal type, oxidation state, protein environment, substrates, and inhibitors. The study of many metal centers in proteins, enzymes, and biomimetic complexes has led to the development of a systematic methodology for quantitative interpretation of EPR spectra from a wide array of metal containing complexes. The methodology is now contained in the computer program SpinCount. SpinCount allows simulation of EPR spectra from any sample containing multiple species composed of one or two metals in any spin state. The simulations are quantitative, thus allowing determination of all species concentrations in a sample directly from spectra. This chapter will focus on applications to transition metals in biological systems using EPR spectra from multiple microwave frequencies and modes.
Collapse
Affiliation(s)
- Doros T Petasis
- Department of Physics, Allegheny College, Meadville, Pennsylvania, USA
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.
| |
Collapse
|
39
|
Singh K, Tiwari MK, Ghosh M, Panda C, Weitz A, Hendrich MP, Dhar BB, Vanka K, Sen Gupta S. Tuning the reactivity of Fe(V)(O) toward C-H bonds at room temperature: effect of water. Inorg Chem 2015; 54:1535-42. [PMID: 25594114 PMCID: PMC4332042 DOI: 10.1021/ic502535f] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2014] [Indexed: 11/29/2022]
Abstract
The presence of an Fe(V)(O) species has been postulated as the active intermediate for the oxidation of both C-H and C═C bonds in the Rieske dioxygenase family of enzymes. Understanding the reactivity of these high valent iron-oxo intermediates, especially in an aqueous medium, would provide a better understanding of these enzymatic reaction mechanisms. The formation of an Fe(V)(O) complex at room temperature in an aqueous CH3CN mixture that contains up to 90% water using NaOCl as the oxidant is reported here. The stability of Fe(V)(O) decreases with increasing water concentration. We show that the reactivity of Fe(V)(O) toward the oxidation of C-H bonds, such as those in toluene, can be tuned by varying the amount of water in the H2O/CH3CN mixture. Rate acceleration of up to 60 times is observed for the oxidation of toluene upon increasing the water concentration. The role of water in accelerating the rate of the reaction has been studied using kinetic measurements, isotope labeling experiments, and density functional theory (DFT) calculations. A kinetic isotope effect of ∼13 was observed for the oxidation of toluene and d8-toluene showing that C-H abstraction was involved in the rate-determining step. Activation parameters determined for toluene oxidation in H2O/CH3CN mixtures on the basis of Eyring plots for the rate constants show a gain in enthalpy with a concomitant loss in entropy. This points to the formation of a more-ordered transition state involving water molecules. To further understand the role of water, we performed a careful DFT study, concentrating mostly on the rate-determining hydrogen abstraction step. The DFT-optimized structure of the starting Fe(V)(O) and the transition state indicates that the rate enhancement is due to the transition state's favored stabilization over the reactant due to enhanced hydrogen bonding with water.
Collapse
Affiliation(s)
- Kundan
K. Singh
- Chemical
Engineering Division, CSIR-National Chemical
Laboratory, Pune 411008, India
| | - Mrityunjay k. Tiwari
- Physical
and Materials Chemistry Division, CSIR-National
Chemical Laboratory, Pune 411008, India
| | - Munmun Ghosh
- Chemical
Engineering Division, CSIR-National Chemical
Laboratory, Pune 411008, India
| | - Chakadola Panda
- Chemical
Engineering Division, CSIR-National Chemical
Laboratory, Pune 411008, India
| | - Andrew Weitz
- Department
of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Michael P. Hendrich
- Department
of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Basab B. Dhar
- Chemical
Engineering Division, CSIR-National Chemical
Laboratory, Pune 411008, India
| | - Kumar Vanka
- Physical
and Materials Chemistry Division, CSIR-National
Chemical Laboratory, Pune 411008, India
| | - Sayam Sen Gupta
- Chemical
Engineering Division, CSIR-National Chemical
Laboratory, Pune 411008, India
| |
Collapse
|
40
|
Caranto JD, Weitz A, Giri N, Hendrich MP, Kurtz DM. A diferrous-dinitrosyl intermediate in the N2O-generating pathway of a deflavinated flavo-diiron protein. Biochemistry 2014; 53:5631-7. [PMID: 25144650 PMCID: PMC4159209 DOI: 10.1021/bi500836z] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
![]()
Flavo-diiron proteins (FDPs) function
as anaerobic nitric oxide
scavengers in some microorganisms, catalyzing reduction of nitric
to nitrous oxide. The FDP from Thermotoga maritima can be prepared in a deflavinated form with an intact diferric site
(deflavo-FDP). Hayashi et al. [(2010) Biochemistry 49, 7040–7049] reported that reaction of NO with reduced deflavo-FDP
produced substoichiometric N2O. Here we report a multispectroscopic
approach to identify the iron species in the reactions of deflavo-FDP
with NO. Mössbauer spectroscopy identified two distinct ferrous
species after reduction of the antiferromagnetically coupled diferric
site. Approximately 60% of the total ferrous iron was assigned to
a diferrous species associated with the N2O-generating
pathway. This pathway proceeds through successive diferrous-mononitrosyl
(S = 1/2 FeII{FeNO}7) and diferrous-dinitrosyl (S = 0 [{FeNO}7]2) species that form within ∼100 ms of
mixing of the reduced protein with NO. The diferrous-dinitrosyl intermediate
converted to an antiferromagnetically coupled diferric species that
was spectroscopically indistinguishable from that in the starting
deflavinated protein. These diiron species closely resembled those
reported for the flavinated FDP [Caranto et al. (2014) J.
Am. Chem. Soc. 136, 7981–7992], and
the time scales of their formation and decay were consistent with
the steady state turnover of the flavinated protein. The remaining
∼40% of ferrous iron was inactive in N2O generation
but reversibly bound NO to give an S = 3/2 {FeNO}7 species. The results demonstrate
that N2O formation in FDPs can occur via conversion of S = 0 [{FeNO}7]2 to a diferric form
without participation of the flavin cofactor.
Collapse
Affiliation(s)
- Jonathan D Caranto
- Department of Chemistry, University of Texas at San Antonio , San Antonio, Texas 78249, United States
| | | | | | | | | |
Collapse
|
41
|
Taguchi T, Stone KL, Gupta R, Kaiser-Lassalle B, Yano J, Hendrich MP, Borovik A. Preparation and Properties of an Mn IV-Hydroxide Complex: Proton and Electron Transfer at a Mononuclear Manganese Site and its Relationship to the Oxygen Evolving Complex within Photosystem II. Chem Sci 2014; 5:3064-3071. [PMID: 25580212 PMCID: PMC4286883 DOI: 10.1039/c4sc00453a] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023] Open
Abstract
Photosynthetic water oxidation is catalyzed by a Mn4O5Ca cluster with an unprecedented arrangement of metal ions in which a single manganese center is bonded to a distorted Mn3O4Ca cubane-like structure. Several mechanistic proposals describe the unique manganese center as a site for water binding and subsequent formation of a high valent Mn-oxo center that reacts with a M-OH unit (M = Mn or CaII) to form the O-O bond. The conversion of low valent Mn-OHn (n = 1,2) to a Mn-oxo species requires that a single manganese site be able to accommodate several oxidation states as the water ligand is deprotonated. To study these processes, the preparation and characterization of a new monomeric MnIV-OH complex is described. The MnIV-OH complex completes a series of well characterized Mn-OH and Mn-oxo complexes containing the same primary and secondary coordination spheres; this work thus demonstrates that a single ligand can support mononuclear Mn complexes spanning four different oxidation states (II through V) with oxo and hydroxo ligands that are derived from water. Moreover, we have completed a thermodynamic analysis based on this series of manganese complexes to predict the formation of high valent Mn-oxo species; we demonstrated that the conversion of a MnIV-OH species to a MnV-oxo complex would likely occur via a stepwise proton transfer-electron transfer mechanism. The large dissociation energy for the MnIVO-H bond (~95 kcal/mol) diminished the likelihood that other pathways are operative within a biological context. Furthermore, these studies showed that reactions between Mn-OH and Mn-oxo complexes lead to non-productive, one-electron processes suggesting that initial O-O bond formation with the OEC does not involve an Mn-OH unit.
Collapse
Affiliation(s)
- Taketo Taguchi
- Department of Chemistry, University of California-Irvine, 1102 Natural Sciences II, Irvine, CA 92697-2025, USA
| | - Kari L. Stone
- Department of Chemistry, Benedictine College, Lisle, IL 60532.
| | - Rupal Gupta
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, PA 15213
| | | | - Junko Yano
- Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720
| | | | - A.S. Borovik
- Department of Chemistry, University of California-Irvine, 1102 Natural Sciences II, Irvine, CA 92697-2025, USA
| |
Collapse
|
42
|
Caranto J, Weitz A, Hendrich MP, Kurtz DM. The nitric oxide reductase mechanism of a flavo-diiron protein: identification of active-site intermediates and products. J Am Chem Soc 2014; 136:7981-92. [PMID: 24828196 PMCID: PMC4063189 DOI: 10.1021/ja5022443] [Citation(s) in RCA: 62] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2014] [Indexed: 11/30/2022]
Abstract
The unique active site of flavo-diiron proteins (FDPs) consists of a nonheme diiron-carboxylate site proximal to a flavin mononucleotide (FMN) cofactor. FDPs serve as the terminal components for reductive scavenging of dioxygen or nitric oxide to combat oxidative or nitrosative stress in bacteria, archaea, and some protozoan parasites. Nitric oxide is reduced to nitrous oxide by the four-electron reduced (FMNH2-Fe(II)Fe(II)) active site. In order to clarify the nitric oxide reductase mechanism, we undertook a multispectroscopic presteady-state investigation, including the first Mössbauer spectroscopic characterization of diiron redox intermediates in FDPs. A new transient intermediate was detected and determined to be an antiferromagnetically coupled diferrous-dinitrosyl (S = 0, [{FeNO}(7)]2) species. This species has an exchange energy, J ≥ 40 cm(-1) (JS1 ° S2), which is consistent with a hydroxo or oxo bridge between the two irons. The results show that the nitric oxide reductase reaction proceeds through successive formation of diferrous-mononitrosyl (S = ½, Fe(II){FeNO}(7)) and the S = 0 diferrous-dinitrosyl species. In the rate-determining process, the diferrous-dinitrosyl converts to diferric (Fe(III)Fe(III)) and by inference N2O. The proximal FMNH2 then rapidly rereduces the diferric site to diferrous (Fe(II)Fe(II)), which can undergo a second 2NO → N2O turnover. This pathway is consistent with previous results on the same deflavinated and flavinated FDP, which detected N2O as a product (Hayashi Biochemistry 2010, 49, 7040). Our results do not support other proposed mechanisms, which proceed either via "super-reduction" of [{FeNO}(7)]2 by FMNH2 or through Fe(II){FeNO}(7) directly to a diferric-hyponitrite intermediate. The results indicate that an S = 0 [{FeNO}(7)}]2 complex is a proximal precursor to N-N bond formation and N-O bond cleavage to give N2O and that this conversion can occur without redox participation of the FMN cofactor.
Collapse
Affiliation(s)
- Jonathan
D. Caranto
- Department
of Chemistry, University of Texas at San
Antonio, San Antonio, Texas 78249, United
States
| | - Andrew Weitz
- Department
of Chemistry, Carnegie-Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Michael P. Hendrich
- Department
of Chemistry, Carnegie-Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Donald M. Kurtz
- Department
of Chemistry, University of Texas at San
Antonio, San Antonio, Texas 78249, United
States
| |
Collapse
|
43
|
Ghosh M, Singh KK, Panda C, Weitz A, Hendrich MP, Collins TJ, Dhar BB, Sen Gupta S. Formation of a room temperature stable Fe(V)(O) complex: reactivity toward unactivated C-H bonds. J Am Chem Soc 2014; 136:9524-7. [PMID: 24387595 DOI: 10.1021/ja412537m] [Citation(s) in RCA: 129] [Impact Index Per Article: 12.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
An Fe(V)(O) complex has been synthesized from equimolar solutions of (Et4N)2[Fe(III)(Cl)(biuret-amide)] and mCPBA in CH3CN at room temperature. The Fe(V)(O) complex has been characterized by UV-vis, EPR, Mössbauer, and HRMS and shown to be capable of oxidizing a series of alkanes having C-H bond dissociation energies ranging from 99.3 kcal mol(-1) (cyclohexane) to 84.5 kcal mol(-1) (cumene). Linearity in the Bell-Evans-Polayni graph and the finding of a large kinetic isotope effect suggest that hydrogen abstraction is engaged the rate-determining step.
Collapse
Affiliation(s)
- Munmun Ghosh
- Chemical Engineering Division, CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pune, Maharashtra 411008, India
| | | | | | | | | | | | | | | |
Collapse
|
44
|
Gupta R, Taguchi T, Borovik AS, Hendrich MP. Characterization of monomeric Mn(II/III/IV)-hydroxo complexes from X- and Q-band dual mode electron paramagnetic resonance (EPR) spectroscopy. Inorg Chem 2013; 52:12568-75. [PMID: 24156406 DOI: 10.1021/ic401681r] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Manganese-hydroxo species have been implicated in C-H bond activation performed by metalloenzymes, but the electronic properties of many of these intermediates are not well characterized. The present work presents a detailed characterization of three Mn(n)-OH complexes (where n = II, III, and IV) of the tris[(N'-tert-butylureaylato)-N-ethylene]aminato ([H3buea](3-)) ligand using X- and Q-band dual mode electron paramagnetic resonance (EPR). Quantitative simulations for the [Mn(II)H3buea(OH)](2-) complex demonstrated the ability to characterize similar Mn(II) species commonly present in the resting states of manganese-containing enzymes. The spin states of the Mn(III) and Mn(IV) complexes determined from EPR spectroscopy are S = 2 and 3/2, respectively, as expected for the C3 symmetry imposed by the [H3buea](3-) ligand. Simulations of the spectra indicated the constant presence of two Mn(IV) species in solutions of [Mn(IV)H3buea(OH)] complex. The simulations of perpendicular- and parallel-mode EPR spectra allow determination of zero-field splitting and hyperfine parameters for all complexes. For the Mn(III) and Mn(IV) complexes, density functional theory calculations are used to determine the isotropic Mn hyperfine values, to compare the excited electronic state energies, and to give theoretical estimates of the zero-field energy.
Collapse
Affiliation(s)
- Rupal Gupta
- Department of Chemistry, University of California-Irvine , 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | | | | | | |
Collapse
|
45
|
Sano Y, Weitz AC, Ziller JW, Hendrich MP, Borovik AS. Unsymmetrical bimetallic complexes with M(II)-(μ-OH)-M(III) cores (M(II)M(III) = Fe(II)Fe(III), Mn(II)Fe(III), Mn(II)Mn(III)): structural, magnetic, and redox properties. Inorg Chem 2013; 52:10229-31. [PMID: 23992041 DOI: 10.1021/ic401561k] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
Heterobimetallic cores are important units within the active sites of metalloproteins but are often difficult to duplicate in synthetic systems. We have developed a synthetic approach for the preparation of a complex with a Mn(II)-(μ-OH)-Fe(III) core, in which the metal centers have different coordination environments. Structural and physical data support the assignment of this complex as a heterobimetallic system. A comparison with analogous homobimetallic complexes, Mn(II)-(μ-OH)-Mn(III) and Fe(II)-(μ-OH)-Fe(III) cores, further supports this assignment.
Collapse
Affiliation(s)
- Yohei Sano
- Department of Chemistry, University of California-Irvine , 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | | | | | | | | |
Collapse
|
46
|
Hayden JA, Farquhar ER, Que L, Lipscomb JD, Hendrich MP. NO binding to Mn-substituted homoprotocatechuate 2,3-dioxygenase: relationship to O₂ reactivity. J Biol Inorg Chem 2013; 18:717-28. [PMID: 23824380 DOI: 10.1007/s00775-013-1016-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2013] [Accepted: 06/15/2013] [Indexed: 10/26/2022]
Abstract
Iron(II)-containing homoprotocatechuate 2,3-dioxygenase (FeHPCD) activates O2 to catalyze the aromatic ring opening of homoprotocatechuate (HPCA). The enzyme requires Fe(II) for catalysis, but Mn(II) can be substituted (MnHPCD) with essentially no change in the steady-state kinetic parameters. Near simultaneous O2 and HPCA activation has been proposed to occur through transfer of an electron or electrons from HPCA to O2 through the divalent metal. In O2 reactions with MnHPCD-HPCA and the 4-nitrocatechol (4NC) complex of the His200Asn (H200N) variant of FeHPCD, this transfer has resulted in the detection of a transient M(III)-O2 (·-) species that is not observed during turnover of the wild-type FeHPCD. The factors governing formation of the M(III)-O2 (·-) species are explored here by EPR spectroscopy using MnHPCD and nitric oxide (NO) as an O2 surrogate. Both the HPCA and the dihydroxymandelic substrate complexes of MnHPCD bind NO, thus representing the first reported stable MnNO complexes of a nonheme enzyme. In contrast, the free enzyme, the MnHPCD-4NC complex, and the MnH200N and MnH200Q variants with or without HPCA bound do not bind NO. The MnHPCD-ligand complexes that bind NO are also active in normal O2-linked turnover, whereas the others are inactive. Past studies have shown that FeHPCD and the analogous variants and catecholic ligand complexes all bind NO, and are active in normal turnover. This contrasting behavior may stem from the ability of the enzyme to maintain the approximately 0.8-V difference in the solution redox potentials of Fe(II) and Mn(II). Owing to the higher potential of Mn, the formation of the NO adduct or the O2 adduct requires both strong charge donation from the bound catecholic ligand and additional stabilization by interaction with the active-site His200. The same nonoptimal electronic and structural forces that prevent NO and O2 binding in MnHPCD variants may lead to inefficient electron transfer from the catecholic substrate to the metal center in variants of FeHPCD during O2-linked turnover. Accordingly, past studies have shown that intermediate Fe(III) species are observed for these mutant enzymes.
Collapse
Affiliation(s)
- Joshua A Hayden
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Ave., Pittsburgh, PA, 15213, USA
| | | | | | | | | |
Collapse
|
47
|
Fago A, Crumbliss AL, Hendrich MP, Pearce LL, Peterson J, Henkens R, Bonaventura C. Oxygen binding to partially nitrosylated hemoglobin. Biochim Biophys Acta 2013; 1834:1894-900. [PMID: 23624264 DOI: 10.1016/j.bbapap.2013.04.017] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2013] [Revised: 04/16/2013] [Accepted: 04/17/2013] [Indexed: 01/11/2023]
Abstract
Reactions of nitric oxide (NO) with hemoglobin (Hb) are important elements in protection against nitrosative damage. NO in the vasculature is depleted by the oxidative reaction with oxy Hb or by binding to deoxy Hb to generate partially nitrosylated Hb (Hb-NO). Many aspects of the formation and persistence of Hb-NO are yet to be clarified. In this study, we used a combination of EPR and visible absorption spectroscopy to investigate the interactions of partially nitrosylated Hb with O2. Partially nitrosylated Hb samples had predominantly hexacoordinate NO-heme geometry and resisted oxidation when exposed to O2 in the absence of anionic allosteric effectors. Faster oxidation occurred in the presence of 2,3-diphosphoglycerate (DPG) or inositol hexaphosphate (IHP), where the NO-heme derivatives had higher levels of pentacoordinate heme geometry. The anion-dependence of the NO-heme geometry also affected O2 binding equilibria. O2-binding curves of partially nitrosylated Hb in the absence of anions were left-shifted at low saturations, indicating destabilization of the low O2 affinity T-state of the Hb by increasing percentages of NO-heme, much as occurs with increasing levels of CO-heme. Samples containing IHP showed small decreases in O2 affinity, indicating shifts toward the low-affinity T-state and formation of inert α-NO/β-met tetramers. Most remarkably, O2-equilibria in the presence of the physiological effector DPG were essentially unchanged by up to 30% NO-heme in the samples. As will be discussed, under physiological conditions the interactions of Hb with NO provide protection against nitrosative damage without impairing O2 transport by Hb's unoccupied heme sites. This article is part of a Special Issue entitled: Oxygen Binding and Sensing Proteins.
Collapse
Affiliation(s)
- Angela Fago
- Department of Bioscience, Aarhus University, DK-8000 Aarhus, Denmark.
| | | | | | | | | | | | | |
Collapse
|
48
|
Gupta R, Lacy DC, Bominaar EL, Borovik AS, Hendrich MP. Electron paramagnetic resonance and Mössbauer spectroscopy and density functional theory analysis of a high-spin Fe(IV)-oxo complex. J Am Chem Soc 2012; 134:9775-84. [PMID: 22574962 PMCID: PMC3869391 DOI: 10.1021/ja303224p] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
High-spin Fe(IV)-oxo species are known to be kinetically competent oxidants in non-heme iron enzymes. The properties of these oxidants are not as well understood as the corresponding intermediate-spin oxidants of heme complexes. The present work gives a detailed characterization of the structurally similar complexes [Fe(IV)H(3)buea(O)](-), [Fe(III)H(3)buea(O)](2-), and [Fe(III)H(3)buea(OH)](-) (H(3)buea = tris[(N'-tert-butylureaylato)-N-ethylene]aminato) using Mössbauer and dual-frequency/dual-mode electron paramagnetic resonance (EPR) spectroscopies. The [Fe(IV)H(3)buea(O)](-) complex has a high-spin (S = 2) configuration imposed by the C(3)-symmetric ligand. The EPR spectra of the [Fe(IV)H(3)buea(O)](-) complex presented here represent the first documented examples of an EPR signal from an Fe(IV)-oxo complex, demonstrating the ability to detect and quantify Fe(IV) species with EPR spectroscopy. Quantitative simulations allowed the determination of the zero-field parameter, D = +4.7 cm(-1), and the species concentration. Density functional theory (DFT) calculations of the zero-field parameter were found to be in agreement with the experimental value and indicated that the major contribution to the D value is from spin-orbit coupling of the ground state with an excited S = 1 electronic configuration at 1.2 eV. (17)O isotope enrichment experiments allowed the determination of the hyperfine constants ((17)O)A(z) = 10 MHz for [Fe(IV)H(3)buea(O)](-) and ((17)O)A(y) = 8 MHz, ((17)O)A(z) = 12 MHz for [Fe(III)H(3)buea(OH)](-). The isotropic hyperfine constant (((17)O)A(iso) = -16.8 MHz) was derived from the experimental value to allow a quantitative determination of the spin polarization (ρ(p) = 0.56) of the oxo p orbitals of the Fe-oxo bond in [Fe(IV)H(3)buea(O)](-). This is the first experimental determination for non-heme complexes and indicates significant covalency in the Fe-oxo bond. High-field Mössbauer spectroscopy gave an (57)Fe A(dip) tensor of (+5.6, +5.3, -10.9) MHz and A(iso) = -25.9 MHz for the [Fe(IV)H(3)buea(O)](-) complex, and the results of DFT calculations were in agreement with the nuclear parameters of the complex.
Collapse
Affiliation(s)
- Rupal Gupta
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - David C. Lacy
- Department of Chemistry, University of California-Irvine, 1102 Natural Sciences II, Irvine, California 92697, United States
| | - Emile L. Bominaar
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Andrew. S. Borovik
- Department of Chemistry, University of California-Irvine, 1102 Natural Sciences II, Irvine, California 92697, United States
| | - Michael P. Hendrich
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| |
Collapse
|
49
|
Pulcu GS, Frato KE, Gupta R, Hsu HR, Levine GA, Hendrich MP, Elliott SJ. The diheme cytochrome c peroxidase from Shewanella oneidensis requires reductive activation. Biochemistry 2012; 51:974-85. [PMID: 22239664 DOI: 10.1021/bi201135s] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We report the characterization of the diheme cytochrome c peroxidase (CcP) from Shewanella oneidensis (So) using UV-visible absorbance, electron paramagnetic resonance spectroscopy, and Michaelis-Menten kinetics. While sequence alignment with other bacterial diheme cytochrome c peroxidases suggests that So CcP may be active in the as-isolated state, we find that So CcP requires reductive activation for full activity, similar to the case for the canonical Pseudomonas type of bacterial CcP enzyme. Peroxide turnover initiated with oxidized So CcP shows a distinct lag phase, which we interpret as reductive activation in situ. A simple kinetic model is sufficient to recapitulate the lag-phase behavior of the progress curves and separate the contributions of reductive activation and peroxide turnover. The rates of catalysis and activation differ between MBP fusion and tag-free So CcP and also depend on the identity of the electron donor. Combined with Michaelis-Menten analysis, these data suggest that So CcP can accommodate electron donor binding in several possible orientations and that the presence of the MBP tag affects the availability of certain binding sites. To further investigate the structural basis of reductive activation in So CcP, we introduced mutations into two different regions of the protein that have been suggested to be important for reductive activation in homologous bacterial CcPs. Mutations in a flexible loop region neighboring the low-potential heme significantly increased the activation rate, confirming the importance of flexible loop regions of the protein in converting the inactive, as-isolated enzyme into the activated form.
Collapse
Affiliation(s)
- Gökçe Su Pulcu
- Department of Chemistry, Boston University, Boston, Massachusetts 02215, United States
| | | | | | | | | | | | | |
Collapse
|
50
|
Taguchi T, Gupta R, Lassalle-Kaiser B, Boyce DW, Yachandra VK, Tolman WB, Yano J, Hendrich MP, Borovik AS. Preparation and properties of a monomeric high-spin Mn(V)-oxo complex. J Am Chem Soc 2012; 134:1996-9. [PMID: 22233169 DOI: 10.1021/ja210957u] [Citation(s) in RCA: 94] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Oxomanganese(V) species have been implicated in a variety of biological and synthetic processes, including their role as a key reactive center within the oxygen-evolving complex in photosynthesis. Nearly all mononuclear Mn(V)-oxo complexes have tetragonal symmetry, producing low-spin species. A new high-spin Mn(V)-oxo complex that was prepared from a well-characterized oxomanganese(III) complex having trigonal symmetry is now reported. Oxidation experiments with [FeCp(2)](+) were monitored with optical and electron paramagnetic resonance (EPR) spectroscopies and support a high-spin oxomanganese(V) complex formulation. The parallel-mode EPR spectrum has a distinctive S = 1 signal at g = 4.01 with a six-line hyperfine pattern having A(z) = 113 MHz. The presence of an oxo ligand was supported by resonance Raman spectroscopy, which revealed O-isotope-sensitive peaks at 737 and 754 cm(-1) assigned as a Fermi doublet centered at 746 cm(-1)(Δ(18)O = 31 cm(-1)). Mn Kβ X-ray emission spectra showed Kβ' and Kβ(1,3) bands at 6475.92 and 6490.50 eV, respectively, which are characteristic of a high-spin Mn(V) center.
Collapse
Affiliation(s)
- Taketo Taguchi
- Department of Chemistry, University of California-Irvine, 1102 Natural Sciences II, Irvine, California 92697, USA
| | | | | | | | | | | | | | | | | |
Collapse
|