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Vašíček T, Arensmeyer B, Monti A, Zamyatina A. Versatile approach towards fully desymmetrized trehalose with a novel set of orthogonal protecting groups. Front Chem 2024; 11:1332837. [PMID: 38274896 PMCID: PMC10808579 DOI: 10.3389/fchem.2023.1332837] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Accepted: 12/18/2023] [Indexed: 01/27/2024] Open
Abstract
Trehalose-containing glycans play an essential role in bacterial pathogenesis, host-pathogen interaction, and cell signaling. The investigation of trehalose uptake and metabolism in Mycobacteria using synthetic desymmetrized trehalose probes is an important approach for the development of diagnostic tools and potential therapeutics for tuberculosis. Trehalose-derived mycobacterial glycolipids activate the innate immune response through recognition by the C-type lectin Mincle, justifying efforts to develop novel trehalose-based Mincle-dependent adjuvants. The chemical synthesis of trehalose-based glycoconjugates, glycolipids, and small-molecule trehalose probes requires the challenging chemical desymmetrization of eight hydroxyl groups in a C 2-symmetric disaccharide αGlc(1↔1)αGlc. Using a novel set of orthogonal protecting groups, we developed a flexible multiscale synthetic approach to a collection of differently and variably protected fully desymmetrized trehalose derivatives, ready for final chemical modification with relevant functional or reporter groups. Using a regioselective and site-specific protecting group strategy, we performed multiple symmetry-breaking operations, resulting in a library of trehalose-derived orthogonally protected building blocks as a versatile source for the synthesis of complex trehalose-containing glycans.
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Affiliation(s)
| | | | | | - Alla Zamyatina
- Department of Chemistry, Institute of Organic Chemistry, University of Natural Resources and Life Sciences, Vienna, Austria
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2
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Cattin M, Bruxelle JF, Ng K, Blaukopf M, Pantophlet R, Kosma P. Synthetic neoglycoconjugates of hepta- and nonamannoside ligands for eliciting oligomannose-specific HIV-1-neutralizing antibodies. Chembiochem 2022; 23:e202200061. [PMID: 35104013 PMCID: PMC9108342 DOI: 10.1002/cbic.202200061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Revised: 02/01/2022] [Indexed: 11/08/2022]
Abstract
Oligomannose-type glycans on the spike protein of HIV-1 constitute relevant epitopes to elicit broadly neutralizing antibodies (bnAbs). Herein we describe an improved synthesis of α- and β-linked hepta- and nonamannosyl ligands that, subsequently, were converted into BSA and CRM 197 neoglycoconjugates. We assembled the ligands from anomeric 3-azidopropyl spacer glycosides from select 3-O-protected thiocresyl mannoside donors. Chain extensions were achieved using 4+3 or 4+5 block synthesis of thiocresyl and trichloroacetimidate glycosyl donors. Subsequent global deprotection generated the 3-aminopropyl oligosaccharide ligands. ELISA binding data obtained with the β-anomeric hepta- and nonamannosyl conjugates with a selection of HIV-1 bnAbs showed comparable binding of both mannosyl ligands by Fab fragments yet lesser binding of the nonasaccharide conjugate by the corresponding IgG antibodies. These results support previous observations that a complete Man 9 structure might not be the preferred antigenic binding motif for some oligomannose-specific antibodies and have implications for glycoside designs to elicit oligomannose-targeted HIV-1-neutralizing antibodies.
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Affiliation(s)
- Matteo Cattin
- University of Natural Resources and Life Sciences: Universitat fur Bodenkultur Wien, Chemistry, Muthgasse 18, A 1190, Vienna, AUSTRIA
| | - Jean-François Bruxelle
- Simon Fraser University Faculty of Health Sciences, Molecular Biology and Biochemistry, Burnaby, CANADA
| | - Kurtis Ng
- Simon Fraser University Faculty of Health Sciences, Molecular Biology and Biochemistry, CANADA
| | - Markus Blaukopf
- University of Natural Resources and Life Sciences Vienna: Universitat fur Bodenkultur Wien, Chemistry, AUSTRIA
| | - Ralph Pantophlet
- Simon Fraser University Faculty of Health Sciences, Molecular Biology and Biochemistry, V5A 1S6, Burnaby, CANADA
| | - Paul Kosma
- University of Natural Resources and Life Sciences, Chemistry, Muthgasse 18, A 1190, Vienna, AUSTRIA
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3
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Judeh ZMA, Ong LL, Wong K, Devaraj S, Khong Duc T, Parthasarathi P, Santoso M. Orthogonal Approach for the Precise Synthesis of Phenylpropanoid Sucrose Esters. NEW J CHEM 2022. [DOI: 10.1039/d2nj00881e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Phenylpropanoid sucrose esters (PSEs) are plant-derived metabolites that exist widely in medicinal plants and possess important bioactivities. Their precise synthesis is challenging due to the distinct and diverse substitution patterns...
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4
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Peterson JA, Yuan D, Winter AH. Multiwavelength Control of Mixtures Using Visible Light-Absorbing Photocages. J Org Chem 2021; 86:9781-9787. [PMID: 34197119 DOI: 10.1021/acs.joc.1c00658] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Selective deprotection of functional groups using different wavelengths of light is attractive for materials synthesis as well as for achieving independent photocontrol over substrates in biological systems. Here, we show that mixtures of recently developed visible light-absorbing BODIPY-derived photoremovable protecting groups (PRPGs) and a coumarin-derived PRPG can undergo wavelength-selective activation, giving independent optical control over a mixture of photocaged substrates using biologically benign long-wavelength light.
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Affiliation(s)
- Julie A Peterson
- Department of Chemistry, Iowa State University, 1605 Gilman Hall, Ames, Iowa 50010, United States
| | - Ding Yuan
- Department of Chemistry, Iowa State University, 1605 Gilman Hall, Ames, Iowa 50010, United States
| | - Arthur H Winter
- Department of Chemistry, Iowa State University, 1605 Gilman Hall, Ames, Iowa 50010, United States
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5
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Li W, Yu B. Temporary ether protecting groups at the anomeric center in complex carbohydrate synthesis. Adv Carbohydr Chem Biochem 2020; 77:1-69. [PMID: 33004110 DOI: 10.1016/bs.accb.2019.10.001] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
The synthesis of a carbohydrate building block usually starts with introduction of a temporary protecting group at the anomeric center and ends with its selective cleavage for further transformation. Thus, the choice of the anomeric temporary protecting group must be carefully considered because it should retain intact during the whole synthetic manipulation, and it should be chemoselectively removable without affecting other functional groups at a late stage in the synthesis. Etherate groups are the most widely used temporary protecting groups at the anomeric center, generally including allyl ethers, MP (p-methoxyphenyl) ethers, benzyl ethers, PMB (p-methoxybenzyl) eithers, and silyl ethers. This chapter provides a comprehensive review on their formation, cleavage, and applications in the synthesis of complex carbohydrates.
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Affiliation(s)
- Wei Li
- Department of Medicinal Chemistry, School of Pharmacy, China Pharmaceutical University, Nanjing, China.
| | - Biao Yu
- State Key Laboratory of Bio-organic and Natural Products Chemistry, Center for Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, China.
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6
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Gucchait A, Misra AK. Influence of remote functional groups towards the formation of 1,2-cis glycosides: special emphasis on β-mannosylation. Org Biomol Chem 2019; 17:4605-4610. [DOI: 10.1039/c9ob00670b] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
The influence of remote functional groups for the stereoselective formation of 1,2-cis glycosides and β-mannosides is reported.
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Affiliation(s)
- Arin Gucchait
- Bose Institute
- Division of Molecular Medicine
- Kolkata 700054
- India
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7
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Li W, Gao Y, Li Q, Li ZJ. Ionic-liquid supported rapid synthesis of an N-glycan core pentasaccharide on a 10 g scale. Org Biomol Chem 2018; 16:4720-4727. [DOI: 10.1039/c8ob01046c] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
A hetero-branched N-glycan core pentasaccharide was rapidly assembled on a new ionic liquid support on a 10 g scale.
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Affiliation(s)
- Wei Li
- The State Key Laboratory of Natural and Biomimetic Drugs
- School of Pharmaceutical Sciences
- Peking University
- Beijing 100191
- China
| | - Yu Gao
- The State Key Laboratory of Natural and Biomimetic Drugs
- School of Pharmaceutical Sciences
- Peking University
- Beijing 100191
- China
| | - Qing Li
- The State Key Laboratory of Natural and Biomimetic Drugs
- School of Pharmaceutical Sciences
- Peking University
- Beijing 100191
- China
| | - Zhong-Jun Li
- The State Key Laboratory of Natural and Biomimetic Drugs
- School of Pharmaceutical Sciences
- Peking University
- Beijing 100191
- China
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8
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9
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Lo Re D, Jones L, Giralt E, Murphy P. Synthesis of an Orthogonally Protected Polyhydroxylated Cyclopentene from l-Sorbose. Chem Asian J 2016; 11:2035-40. [PMID: 27304425 DOI: 10.1002/asia.201600736] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2016] [Indexed: 11/06/2022]
Abstract
The use of l-sorbose in the synthesis of functionalized cyclopentene derivatives was accomplished. These cyclopentene derivatives are related to those found in naturally occurring jatrophane frameworks and in other bioactive compounds. The formation of allyl α-l-sorbopyranoside was a key synthetic step. Regioselective introduction of protecting groups was followed by the hydrolysis of the allyl glycoside to furnish a fully protected acyclic l-sorbose derivative. This acyclic intermediate was subsequently used to give an orthogonally protected polyhydroxylated cyclopentene, which has potential for further synthesis of bioactive compounds. The protected cyclopentene itself showed a clear cytotoxic activity when tested against a panel of human cancer cell lines (HT29, LS174T, SW620, A549, and HeLa cells).
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Affiliation(s)
- Daniele Lo Re
- School of Chemistry, National University of Ireland, Galway, University Road, Galway, Ireland.
| | - Leigh Jones
- School of Chemistry, National University of Ireland, Galway, University Road, Galway, Ireland
| | - Ernest Giralt
- Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, C/Baldiri Reixac 10, Barcelona, E-08028, Spain.,Department of Organic Chemistry, University of Barcelona, Marti i Franques 1-11, Barcelona, E-08028, Spain
| | - Paul Murphy
- School of Chemistry, National University of Ireland, Galway, University Road, Galway, Ireland.
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10
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Andersen MCF, Kračun SK, Rydahl MG, Willats WGT, Clausen MH. Synthesis of β-1,4-Linked Galactan Side-Chains of Rhamnogalacturonan I. Chemistry 2016; 22:11543-8. [PMID: 27305141 DOI: 10.1002/chem.201602197] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2016] [Indexed: 11/05/2022]
Abstract
The synthesis of linear- and (1→6)-branched β-(1→4)-d-galactans, side-chains of the pectic polysaccharide rhamnogalacturonan I is described. The strategy relies on iterative couplings of n-pentenyl disaccharides followed by a late stage glycosylation of a common hexasaccharide core. Reaction with a covalent linker and immobilization on N-hydroxysuccinimide (NHS)-modified glass surfaces allows the generation of carbohydrate microarrays. The glycan arrays enable the study of protein-carbohydrate interactions in a high-throughput fashion, demonstrated herein with binding studies of mAbs and a CBM.
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Affiliation(s)
- Mathias C F Andersen
- Center for Nanomedicine and Theranostics, Department of Chemistry, Technical University of Denmark, Kemitorvet, Building 207, 2800 Kgs., Lyngby, Denmark
| | - Stjepan K Kračun
- Department of Plant and Environmental Sciences, Thorvaldsensvej 40, Frederiksberg C, 1871, Denmark
| | - Maja G Rydahl
- Department of Plant and Environmental Sciences, Thorvaldsensvej 40, Frederiksberg C, 1871, Denmark
| | - William G T Willats
- Department of Plant and Environmental Sciences, Thorvaldsensvej 40, Frederiksberg C, 1871, Denmark.,School of Agriculture, Food and Rural Development, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK
| | - Mads H Clausen
- Center for Nanomedicine and Theranostics, Department of Chemistry, Technical University of Denmark, Kemitorvet, Building 207, 2800 Kgs., Lyngby, Denmark.
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11
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Elferink H, Mensink RA, White PB, Boltje TJ. Stereoselective β-Mannosylation by Neighboring-Group Participation. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201604358] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Hidde Elferink
- Institute for Molecules and Materials; Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
| | - Rens A. Mensink
- Institute for Molecules and Materials; Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
| | - Paul B. White
- Institute for Molecules and Materials; Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
| | - Thomas J. Boltje
- Institute for Molecules and Materials; Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
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12
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Elferink H, Mensink RA, White PB, Boltje TJ. Stereoselective β-Mannosylation by Neighboring-Group Participation. Angew Chem Int Ed Engl 2016; 55:11217-20. [DOI: 10.1002/anie.201604358] [Citation(s) in RCA: 50] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2016] [Revised: 06/02/2016] [Indexed: 11/12/2022]
Affiliation(s)
- Hidde Elferink
- Institute for Molecules and Materials; Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
| | - Rens A. Mensink
- Institute for Molecules and Materials; Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
| | - Paul B. White
- Institute for Molecules and Materials; Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
| | - Thomas J. Boltje
- Institute for Molecules and Materials; Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
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13
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Daum M, Broszeit F, Hoffmann-Röder A. Synthesis of a Fluorinated Sialophorin Hexasaccharide-Threonine Conjugate for Fmoc Solid-Phase Glycopeptide Synthesis. European J Org Chem 2016. [DOI: 10.1002/ejoc.201600523] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Markus Daum
- Center for Integrated Protein Science Munich (CIPS ) at the Department of Chemistry; Ludwig-Maximilians-Universität; Butenandtstr. 5-13 81377 Munich Germany
| | - Frederik Broszeit
- Center for Integrated Protein Science Munich (CIPS ) at the Department of Chemistry; Ludwig-Maximilians-Universität; Butenandtstr. 5-13 81377 Munich Germany
| | - Anja Hoffmann-Röder
- Center for Integrated Protein Science Munich (CIPS ) at the Department of Chemistry; Ludwig-Maximilians-Universität; Butenandtstr. 5-13 81377 Munich Germany
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14
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15
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Ágoston K, Ágoston Á, Dorgan CR, Fügedi P. A new method testing the orthogonality of different protecting groups. Carbohydr Res 2015; 418:98-103. [PMID: 26580711 DOI: 10.1016/j.carres.2015.10.007] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2015] [Revised: 10/16/2015] [Accepted: 10/16/2015] [Indexed: 11/20/2022]
Abstract
A new test was elaborated to identify a new set of orthogonal protecting groups. With the developed method eight different protecting groups were tested under various deprotection conditions and the complex reaction mixtures were analysed by HPLC. The developed method allows for quick identification of orthogonality using simple model structures.
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Affiliation(s)
- Károly Ágoston
- Institute of Organic Chemistry, RCNS-HAS, Magyar Tudósok Körútja 2, 1117 Budapest, Hungary; Carbosynth LTD, 8&9 Old Station Business Park, RG20 6NE Compton, UK.
| | - Ágnes Ágoston
- Lab-Comp LTD, Rákos Tér 23/A, 1142 Budapest, Hungary
| | - Colin R Dorgan
- Carbosynth LTD, 8&9 Old Station Business Park, RG20 6NE Compton, UK
| | - Péter Fügedi
- Institute of Organic Chemistry, RCNS-HAS, Magyar Tudósok Körútja 2, 1117 Budapest, Hungary
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16
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Ágoston K, Watt GM, Fügedi P. A new set of orthogonal protecting groups on a monosaccharide scaffold. Tetrahedron Lett 2015. [DOI: 10.1016/j.tetlet.2015.07.015] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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17
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Sun P, Wang P, Zhang Y, Zhang X, Wang C, Liu S, Lu J, Li M. Construction of β-Mannosidic Bonds via Gold(I)-Catalyzed Glycosylations with Mannopyranosyl ortho-Hexynylbenzoates and Its Application in Synthesis of Acremomannolipin A. J Org Chem 2015; 80:4164-75. [DOI: 10.1021/acs.joc.5b00140] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Peng Sun
- Key
Laboratory of Marine Medicine, Chinese Ministry of Education, School
of Medicine and Pharmacy, Ocean University of China, Qingdao, 266003 Shandong, P. R. China
| | - Peng Wang
- Key
Laboratory of Marine Medicine, Chinese Ministry of Education, School
of Medicine and Pharmacy, Ocean University of China, Qingdao, 266003 Shandong, P. R. China
| | - Yongzhen Zhang
- Key
Laboratory of Marine Medicine, Chinese Ministry of Education, School
of Medicine and Pharmacy, Ocean University of China, Qingdao, 266003 Shandong, P. R. China
| | - Xiuli Zhang
- Key
Laboratory of Marine Medicine, Chinese Ministry of Education, School
of Medicine and Pharmacy, Ocean University of China, Qingdao, 266003 Shandong, P. R. China
| | - Cong Wang
- Key
Laboratory of Marine Medicine, Chinese Ministry of Education, School
of Medicine and Pharmacy, Ocean University of China, Qingdao, 266003 Shandong, P. R. China
| | - Shaojing Liu
- Key
Laboratory of Marine Medicine, Chinese Ministry of Education, School
of Medicine and Pharmacy, Ocean University of China, Qingdao, 266003 Shandong, P. R. China
| | - Jinjie Lu
- Key
Laboratory of Marine Medicine, Chinese Ministry of Education, School
of Medicine and Pharmacy, Ocean University of China, Qingdao, 266003 Shandong, P. R. China
| | - Ming Li
- Key
Laboratory of Marine Medicine, Chinese Ministry of Education, School
of Medicine and Pharmacy, Ocean University of China, Qingdao, 266003 Shandong, P. R. China
- State
Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Science, Shanghai, 201203, P. R. China
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18
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Tu Z, Liu PK, Wu MC, Lin CH. Expeditious Synthesis of Orthogonally Protected Saccharides through Consecutive Protection/Glycosylation Steps. Isr J Chem 2015. [DOI: 10.1002/ijch.201400166] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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19
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Gagarinov IA, Fang T, Liu L, Srivastava AD, Boons GJ. Synthesis of Staphylococcus aureus Type 5 trisaccharide repeating unit: solving the problem of lactamization. Org Lett 2015; 17:928-31. [PMID: 25658811 PMCID: PMC4507426 DOI: 10.1021/acs.orglett.5b00031] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
The chemical synthesis of an orthogonally protected trisaccharide derived from the polysaccharide of Staphylococcus aureus Type 5, which is an attractive candidate for the development of immunotherapies, is described. The challenging α-fucosylation and β-mannosylation are addressed through the careful choice of protecting groups. Lactamization of a β-D-ManpNAcA moiety during deprotection was avoided by a late stage oxidation approach. Versatility of the trisaccharide was demonstrated by its transformation into a spacer-containing repeating unit suitable for immunological investigations.
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Affiliation(s)
- Ivan A. Gagarinov
- Complex Carbohydrate Research Center, The University of Georgia, 315 Riverbend Road, Athens, Georgia 30602, United States
- Department of Chemistry, The University of Georgia, Athens, Georgia 30602, United States
| | - Tao Fang
- Complex Carbohydrate Research Center, The University of Georgia, 315 Riverbend Road, Athens, Georgia 30602, United States
- Department of Chemistry, The University of Georgia, Athens, Georgia 30602, United States
| | - Lin Liu
- Complex Carbohydrate Research Center, The University of Georgia, 315 Riverbend Road, Athens, Georgia 30602, United States
| | - Apoorva D. Srivastava
- Complex Carbohydrate Research Center, The University of Georgia, 315 Riverbend Road, Athens, Georgia 30602, United States
- Department of Chemistry, The University of Georgia, Athens, Georgia 30602, United States
| | - Geert-Jan Boons
- Complex Carbohydrate Research Center, The University of Georgia, 315 Riverbend Road, Athens, Georgia 30602, United States
- Department of Chemistry, The University of Georgia, Athens, Georgia 30602, United States
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20
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21
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Zhou J, Yang L, Hu W. Stereoselective synthesis of a sulfated tetrasaccharide corresponding to a rare sequence in the galactofucan isolated from Sargassum polycystum. J Org Chem 2014; 79:4718-26. [PMID: 24766314 DOI: 10.1021/jo500503r] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
The first chemical synthesis of a highly sulfated tetrasaccharide 1, as the rare sequence in the galactofucan isolated from the brown alga Sargassum polycystum, was achieved in a convergent and stereoselective manner. The key features of the synthetic strategy include construction of multiple contiguous 1,2-cis glycosidic bonds and [2 + 2] assembly based on the rationally developed d-galactose building block 6. The synthesized oligosaccharides were fully characterized using a combination of coupled-HSQC and other 2D NMR techniques.
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Affiliation(s)
- Jun Zhou
- Shanghai Engineering Research Centre of Molecular Therapeutics and New Drug Development, and Department of Chemistry, East China Normal University , Shanghai, 200062, PR China
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22
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Tamigney Kenfack M, Blériot Y, Gauthier C. Intramolecular Aglycon Delivery Enables the Synthesis of 6-Deoxy-β-d-manno-heptosides as Fragments of Burkholderia pseudomallei and Burkholderia mallei Capsular Polysaccharide. J Org Chem 2014; 79:4615-34. [DOI: 10.1021/jo500640n] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Marielle Tamigney Kenfack
- Université de Poitiers, Institut de Chimie IC2MP, UMR-CNRS 7285, Équipe Synthèse Organique, 4 rue Michel
Brunet, 86073 Poitiers, France
| | - Yves Blériot
- Université de Poitiers, Institut de Chimie IC2MP, UMR-CNRS 7285, Équipe Synthèse Organique, 4 rue Michel
Brunet, 86073 Poitiers, France
| | - Charles Gauthier
- Université de Poitiers, Institut de Chimie IC2MP, UMR-CNRS 7285, Équipe Synthèse Organique, 4 rue Michel
Brunet, 86073 Poitiers, France
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23
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Li H, Mo K, Wang Q, Stover CK, DiGiandomenico A, Boons G. Epitope Mapping of Monoclonal Antibodies using Synthetic Oligosaccharides Uncovers Novel Aspects of Immune Recognition of the Psl Exopolysaccharide of
Pseudomonas aeruginosa. Chemistry 2013; 19:17425-31. [DOI: 10.1002/chem.201302916] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2013] [Indexed: 11/09/2022]
Affiliation(s)
- Huiqing Li
- Complex Carbohydrate Research Center, The University of Georgia, Athens, GA 30602 (USA)
| | - Kai‐For Mo
- Complex Carbohydrate Research Center, The University of Georgia, Athens, GA 30602 (USA)
| | - Qun Wang
- Department of Infectious Disease, MedImmune, LLC, Gaithersburg, MD (USA)
| | - C. Kendall Stover
- Department of Infectious Disease, MedImmune, LLC, Gaithersburg, MD (USA)
| | | | - Geert‐Jan Boons
- Complex Carbohydrate Research Center, The University of Georgia, Athens, GA 30602 (USA)
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24
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Wong CH, Zimmerman SC. Orthogonality in organic, polymer, and supramolecular chemistry: from Merrifield to click chemistry. Chem Commun (Camb) 2013; 49:1679-95. [PMID: 23282586 DOI: 10.1039/c2cc37316e] [Citation(s) in RCA: 228] [Impact Index Per Article: 20.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
The concept of orthogonality has been applied to many areas of chemistry, ranging from wave functions to chromatography. But it was Barany and Merrifield's orthogonal protecting group strategy that paved the way for solid phase peptide syntheses, other important classes of biomaterials such as oligosaccharides and oligonucleotides, and ultimately to a term in widespread usage that is focused on chemical reactivity and binding selectivity. The orthogonal protection strategy has been extended to the development of orthogonal activation, and recently the click reaction, for streamlining organic synthesis. The click reaction and its variants are considered orthogonal as the components react together in high yield and in the presence of many other functional groups. Likewise, supramolecular building blocks can also be orthogonal, thereby enabling programmed self-assembly, a superb strategy to create complex architectures. Overall, orthogonal reactions and supramolecular interactions have dramatically improved the syntheses, the preparation of functional materials, and the self-assembly of nanoscale structures.
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Affiliation(s)
- Chun-Ho Wong
- Department of Chemistry, University of Illinois at Urbana-Champaign, 600 S Mathews Avenue, Urbana, IL 61801, USA
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Wang Z, Chinoy ZS, Ambre SG, Peng W, McBride R, de Vries RP, Glushka J, Paulson JC, Boons GJ. A general strategy for the chemoenzymatic synthesis of asymmetrically branched N-glycans. Science 2013; 341:379-83. [PMID: 23888036 DOI: 10.1126/science.1236231] [Citation(s) in RCA: 257] [Impact Index Per Article: 23.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
A systematic, efficient means of producing diverse libraries of asymmetrically branched N-glycans is needed to investigate the specificities and biology of glycan-binding proteins. To that end, we describe a core pentasaccharide that at potential branching positions is modified by orthogonal protecting groups to allow selective attachment of specific saccharide moieties by chemical glycosylation. The appendages were selected so that the antenna of the resulting deprotected compounds could be selectively extended by glycosyltransferases to give libraries of asymmetrical multi-antennary glycans. The power of the methodology was demonstrated by the preparation of a series of complex oligosaccharides that were printed as microarrays and screened for binding to lectins and influenza-virus hemagglutinins, which showed that recognition is modulated by presentation of minimal epitopes in the context of complex N-glycans.
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Affiliation(s)
- Zhen Wang
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA
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26
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Total synthesis of virgineone aglycone and stereochemical assignment of natural virgineone. Tetrahedron Lett 2013. [DOI: 10.1016/j.tetlet.2013.03.006] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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27
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Santra A, Ghosh T, Misra AK. Removal of benzylidene acetal and benzyl ether in carbohydrate derivatives using triethylsilane and Pd/C. Beilstein J Org Chem 2013; 9:74-8. [PMID: 23400301 PMCID: PMC3566760 DOI: 10.3762/bjoc.9.9] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2012] [Accepted: 12/17/2012] [Indexed: 11/23/2022] Open
Abstract
Clean deprotection of carbohydrate derivatives containing benzylidene acetals and benzyl ethers was achieved under catalytic transfer hydrogenation conditions by using a combination of triethylsilane and 10% Pd/C in CH3OH at room temperature. A variety of carbohydrate diol derivatives were prepared from their benzylidene derivatives in excellent yield.
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Affiliation(s)
- Abhishek Santra
- Bose Institute, Division of Molecular Medicine, P-1/12, C.I.T. Scheme VII-M, Kolkata-700054, India; FAX: 91-33-2355 3886
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Liang XY, Liu QW, Bin HC, Yang JS. One-pot synthesis of branched oligosaccharides by use of galacto- and mannopyranosyl thioglycoside diols as key glycosylating agents. Org Biomol Chem 2013; 11:3903-17. [DOI: 10.1039/c3ob40421h] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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Boltje TJ, Zhong W, Park J, Wolfert MA, Chen W, Boons GJ. Chemical synthesis and immunological evaluation of the inner core oligosaccharide of Francisella tularensis. J Am Chem Soc 2012; 134:14255-62. [PMID: 22867268 DOI: 10.1021/ja306274v] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Francisella tularensis, which is a Gram negative bacterium that causes tularemia, has been classified by the Center for Disease Control and Prevention (CDC) as a category A bioweapon. The development of vaccines, immunotherapeutics, and diagnostics for F. tularensis requires a detailed knowledge of the saccharide structures that can be recognized by protective antibodies. We have synthesized the inner core region of the lipopolysaccharide (LPS) of F. tularensis to probe antigenic responses elicited by a live and subunit vaccine. The successful preparation of the target compound relied on the use of a disaccharide which was modified by the orthogonal protecting groups diethylisopropylsilyl (DEIPS), 2-naphthylmethyl (Nap), allyl ether (All), and levulinoyl (Lev) ester. The ability to remove the protecting groups in different orders made it possible to establish the optimal glycosylations sequence to prepare a highly crowded 1,2,3-cis configured branching point. A variety of different methods were exploited to control anomeric selectivities of the glycosylations. A comparison of the (1)H NMR spectra of isolated material and the synthetic derivative confirmed the reported structural assignment of the inner core oligosaccharide of F. tularensis . The observation that immunizations with LPS lead to antibody responses to the inner core saccharides provides an impetus to further explore this compound as a vaccine candidate.
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Affiliation(s)
- Thomas J Boltje
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, Georgia 30602, USA
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30
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Li Y, Yin Z, Wang B, Meng XB, Li ZJ. Synthesis of orthogonally protected l-glucose, l-mannose, and l-galactose from d-glucose. Tetrahedron 2012. [DOI: 10.1016/j.tet.2012.04.001] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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31
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Yoshimura H, Eto K, Takahashi K, Ishihara J, Hatakeyama S. A New Method for the Protection of Carboxylic Acids with a Triisopropylsiloxymethyl Group. Chem Pharm Bull (Tokyo) 2012; 60:1334-9. [DOI: 10.1248/cpb.c12-00490] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Affiliation(s)
| | - Kohei Eto
- Graduate School of Biomedical Sciences, Nagasaki University
| | | | - Jun Ishihara
- Graduate School of Biomedical Sciences, Nagasaki University
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Ishiwata A, Sakurai A, Nishimiya Y, Tsuda S, Ito Y. Synthetic study and structural analysis of the antifreeze agent xylomannan from Upis ceramboides. J Am Chem Soc 2011; 133:19524-35. [PMID: 22029271 DOI: 10.1021/ja208528c] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
The novel antifreeze factor, xylomannan, first isolated from the freeze-tolerant Alaskan beetle Upis ceramboides , demonstrates a high degree of thermal hysteresis, comparable to that of the most active insect antifreeze proteins. Although the presence of a lipid component in this factor has not yet been verified, it has been proposed that the glycan backbone consists of a β-D-mannopyranosyl-(1→4)-β-D-xylopyranose-disaccharide-repeating structure according to MS and NMR analyses. In this contribution, we report the stereoselective synthesis of the tetrasaccharide β-D-mannopyranosyl-(1→4)-β-D-xylopyranosyl-(1→4)-β-D-mannopyranosyl-(1→4)-D-xylopyranoside, a structural component of xylomannan. Our synthesis features the use of 2-naphthylmethyl (NAP)-ether-mediated intramolecular aglycon delivery (IAD) as the key reaction in obtaining β-mannopyranoside stereoselectively. Various donors for NAP-IAD were tested to determine the most suitable for the purposes of this synthesis. Fragment coupling between a disaccharyl fluoride and a disaccharide acceptor obtained from a common β-D-mannopyranosyl-(1→4)-β-D-xylopyranoside derivative was successfully carried out to afford the desired tetrasaccharide in the presence of Cp(2)HfCl(2)-AgClO(4). Structural analysis of the resulting synthetic tetrasaccharide using NMR techniques and molecular modeling was performed in order to demonstrate the presence of the proposed xylomannan linkages in this molecule.
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Affiliation(s)
- Akihiro Ishiwata
- RIKEN Advanced Science Institute, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan.
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Li Y, Roy B, Liu X. New insight on 2-naphthylmethyl (NAP) ether as a protecting group in carbohydrate synthesis: a divergent approach towards a high-mannose type oligosaccharide library. Chem Commun (Camb) 2011; 47:8952-4. [DOI: 10.1039/c1cc13264d] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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