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Umaña CA, Henry JL, Saltzman CT, Sackett DL, Jenkins LM, Taylor RE. Linear (-)-Zampanolide: Flexibility in Conformation-Activity Relationships. ChemMedChem 2023; 18:e202300292. [PMID: 37552215 PMCID: PMC10615712 DOI: 10.1002/cmdc.202300292] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 07/20/2023] [Accepted: 08/01/2023] [Indexed: 08/09/2023]
Abstract
Through an understanding of the conformational preferences of the polyketide natural product (-)-zampanolide, and the structural motifs that control these preferences, we developed a linear zampanolide analogue that exhibits potent cytotoxicity against cancer cell lines. This discovery provides a set of three structural handles for further structure-activity relationship (SAR) studies of this potent microtubule-stabilizing agent. Moreover, it provides additional evidence of the complex relationship between ligand preorganization, conformational flexibility, and biological potency. In contrast to medicinal chemistry dogma, these results demonstrate that increased overall conformational flexibility is not necessarily detrimental to protein binding affinity and biological activity.
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Affiliation(s)
- Christian A Umaña
- Department of Chemistry and Biochemistry and the Warren Center for Drug Discovery, University of Notre Dame, Notre Dame, IN 46556-5670, USA
| | - Jeffrey L Henry
- Department of Chemistry and Biochemistry and the Warren Center for Drug Discovery, University of Notre Dame, Notre Dame, IN 46556-5670, USA
| | - Claire T Saltzman
- Department of Chemistry and Biochemistry and the Warren Center for Drug Discovery, University of Notre Dame, Notre Dame, IN 46556-5670, USA
| | - Dan L Sackett
- Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA
| | - Lisa M Jenkins
- Center for Cancer Research, National Cancer Institute, Bethesda, MD 20892, USA
| | - Richard E Taylor
- Department of Chemistry and Biochemistry and the Warren Center for Drug Discovery, University of Notre Dame, Notre Dame, IN 46556-5670, USA
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2
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Henry JL, Wilson MR, Mulligan MP, Quinn TR, Sackett DL, Taylor RE. Synthesis, conformational preferences, and biological activity of conformational analogues of the microtubule-stabilizing agents, (-)-zampanolide and (-)-dactylolide. MEDCHEMCOMM 2019; 10:800-805. [PMID: 31191870 PMCID: PMC6540953 DOI: 10.1039/c9md00164f] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2019] [Accepted: 04/08/2019] [Indexed: 01/07/2023]
Abstract
Zampanolide and dactylolide are microtubule-stabilizing polyketides possessing potent cytotoxicity towards a variety of cancer cell lines. Using our understanding of the conformational preferences of the macrolide core in both natural products, we hypothesized that analogues lacking the C17-methyl group would maintain the necessary conformation for bioactivity while reducing the number of synthetic manipulations necessary for their synthesis. Analogues 3, 4 and 5 were prepared via total synthesis, and their conformational preferences were determined through computational and high-field NMR studies. While no observable activities were present in dactylolide analogues 3 and 4, zampanolide analogue 5 exhibited sub-micromolar cytotoxicity. Herein, we describe these efforts towards understanding the structure- and conformation-activity relationships of dactylolide and zampanolide.
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Affiliation(s)
- Jeffrey L Henry
- The Warren Family Research Center for Drug Discovery and Development and the Department of Chemistry & Biochemistry , University of Notre Dame , Notre Dame , IN 46556-5670 , USA .
| | - Matthew R Wilson
- Vertex Pharmaceuticals , 50 Northern Ave , Boston , MA 02210 , USA
| | - Michael P Mulligan
- The Warren Family Research Center for Drug Discovery and Development and the Department of Chemistry & Biochemistry , University of Notre Dame , Notre Dame , IN 46556-5670 , USA .
| | - Taylor R Quinn
- The Warren Family Research Center for Drug Discovery and Development and the Department of Chemistry & Biochemistry , University of Notre Dame , Notre Dame , IN 46556-5670 , USA .
| | - Dan L Sackett
- Eunice Kennedy Shriver National Institute of Child Health and Human Development , National Institutes of Health , Bethesda , MD 20892 , USA
| | - Richard E Taylor
- The Warren Family Research Center for Drug Discovery and Development and the Department of Chemistry & Biochemistry , University of Notre Dame , Notre Dame , IN 46556-5670 , USA .
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3
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Chang CF, Stefan E, Taylor RE. Total Synthesis and Structural Reassignment of Lyngbyaloside C Highlighted by Intermolecular Ketene Esterification. Chemistry 2015; 21:10681-6. [PMID: 26101039 PMCID: PMC6896800 DOI: 10.1002/chem.201502132] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2015] [Indexed: 11/07/2022]
Abstract
Lyngbyaloside C, a classic macrolide, isolated from Lyngbya bouilloni, has shown moderate anticancer activity against several cancer cell lines. Here, we report the first total synthesis and stereochemical configuration reassignment of lyngbyaloside C. The synthesis highlights a one-pot intermolecular ketene esterification reaction to form the crucial tertiary ester and tetrahydropyran. In addition, a novel and concise synthetic pathway towards the 1,3-syn secondary, tertiary diol fragment is described using a regio- and stereospecific electrophilic ether transfer reaction.
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Affiliation(s)
- Chia-Fu Chang
- Warren Family Research Center for Drug Discovery and Development and the Department of Chemistry & Biochemistry, 250 Nieuwland Science Hall, University of Notre Dame, Notre Dame, IN 46556-5670 (USA)
| | - Eric Stefan
- Warren Family Research Center for Drug Discovery and Development and the Department of Chemistry & Biochemistry, 250 Nieuwland Science Hall, University of Notre Dame, Notre Dame, IN 46556-5670 (USA)
| | - Richard E Taylor
- Warren Family Research Center for Drug Discovery and Development and the Department of Chemistry & Biochemistry, 250 Nieuwland Science Hall, University of Notre Dame, Notre Dame, IN 46556-5670 (USA).
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4
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Stefan E, Taylor RE. 1,5-Hydride transfer protocol for the synthesis of β-branched polyketide structural units. Tetrahedron Lett 2015. [DOI: 10.1016/j.tetlet.2015.01.020] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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5
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Chen QH, Kingston DGI. Zampanolide and dactylolide: cytotoxic tubulin-assembly agents and promising anticancer leads. Nat Prod Rep 2014; 31:1202-26. [PMID: 24945566 PMCID: PMC4126874 DOI: 10.1039/c4np00024b] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2014] [Indexed: 12/21/2022]
Abstract
Zampanolide is a marine natural macrolide and a recent addition to the family of microtubule-stabilizing cytotoxic agents. Zampanolide exhibits unique effects on tubulin assembly and is more potent than paclitaxel against several multi-drug resistant cancer cell lines. A high-resolution crystal structure of αβ-tubulin in complex with zampanolide explains how taxane-site microtubule-stabilizing agents promote microtubule assemble and stability. This review provides an overview of current developments of zampanolide and its related but less potent analogue dactylolide, covering their natural sources and isolation, structure and conformation, cytotoxic potential, structure-activity studies, mechanism of action, and syntheses.
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Affiliation(s)
- Qiao-Hong Chen
- Department of Chemistry , California State University, Fresno , 2555 E. San Ramon Avenue, M/S SB70 , Fresno , CA 93740 , USA . ; Fax: +1 559 2784402 ; Tel: +1 559 2782394
| | - David G. I. Kingston
- Department of Chemistry and Virginia Tech Center for Drug Discovery , M/C 0212, Virginia Tech , Blacksburg , VA 24061 , USA . ; Fax: +1 540 2313255 ; Tel: +1 540 2316570
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6
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Herndon JW. The chemistry of the carbon-transition metal double and triple bond: Annual survey covering the year 2012. Coord Chem Rev 2014. [DOI: 10.1016/j.ccr.2014.02.026] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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7
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Stoddard RL, Luo J, van der Wal N, O'Rourke NF, Wulff JE, McIndoe JS. A multi-pronged mechanistic study of the phosphine-mediated conjugate addition of an alcohol to an acetylenic ester. NEW J CHEM 2014. [DOI: 10.1039/c4nj01070a] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
The conjugate addition of an alcohol to a butynoate ester using an organophosphine catalyst was monitored using pressurized sample infusion electrospray ionization mass spectrometry (PSI-ESI-MS), together with 31P and 1H NMR spectroscopy.
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Affiliation(s)
| | - Jingwei Luo
- Department of Chemistry
- University of Victoria
- Victoria, Canada
| | | | | | - Jeremy E. Wulff
- Department of Chemistry
- University of Victoria
- Victoria, Canada
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8
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Tejedor D, Álvarez-Méndez SJ, López-Soria JM, Martín VS, García-Tellado F. A Robust and General Protocol for the Lewis-Base-Catalysed Reaction of Alcohols and Alkyl Propiolates. European J Org Chem 2013. [DOI: 10.1002/ejoc.201301303] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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9
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Larsen EM, Wilson MR, Zajicek J, Taylor RE. Conformational preferences of zampanolide and dactylolide. Org Lett 2013; 15:5246-9. [PMID: 24102367 DOI: 10.1021/ol402462h] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The solution conformation behavior of the macrolide core of microtubule-stabilizing agents (-)-zampanolide and (-)-dactylolide has been determined through a combination of high-field NMR experiments and computational modeling. Taken together, the results demonstrate that in solution both molecules exist as a mixture of three interconverting conformational families, one of which bears strong resemblance to zampanolide's tubulin-bound conformation.
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Affiliation(s)
- Erik M Larsen
- Department of Chemistry & Biochemistry and the Harper Cancer Research Institute, University of Notre Dame , 251 Nieuwland Science Hall, Notre Dame, Indiana 46556-5670, United States
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10
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Abstract
Ether transfer methodology is capable of stereoselectively generating 1,3-diol mono- and diethers in good yield. Surprisingly, allylic and benzylic substrates provide none of the desired products when exposed to previously optimized conditions of iodine monochloride. Herein, second-generation activation conditions for ether transfer have been developed that circumvents undesired side reactions for these substrates. The application of this chemistry to the enantioselective synthesis of diospongins A and B has now been accomplished.
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Affiliation(s)
- Eric Stefan
- Department of Chemistry and Biochemistry and the Mike and Josie Harper Cancer Research Institute, University of Notre Dame, 251 Niewland Science Hall, Notre Dame, IN 46556, United States
| | - Ansel P. Nalin
- Department of Chemistry and Biochemistry and the Mike and Josie Harper Cancer Research Institute, University of Notre Dame, 251 Niewland Science Hall, Notre Dame, IN 46556, United States
| | - Richard E. Taylor
- Department of Chemistry and Biochemistry and the Mike and Josie Harper Cancer Research Institute, University of Notre Dame, 251 Niewland Science Hall, Notre Dame, IN 46556, United States
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Yu X, Sun D. Macrocyclic drugs and synthetic methodologies toward macrocycles. Molecules 2013; 18:6230-68. [PMID: 23708234 PMCID: PMC4374646 DOI: 10.3390/molecules18066230] [Citation(s) in RCA: 163] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2013] [Revised: 05/15/2013] [Accepted: 05/20/2013] [Indexed: 01/02/2023] Open
Abstract
Macrocyclic scaffolds are commonly found in bioactive natural products and pharmaceutical molecules. So far, a large number of macrocyclic natural products have been isolated and synthesized. The construction of macrocycles is generally considered as a crucial and challenging step in the synthesis of macrocyclic natural products. Over the last several decades, numerous efforts have been undertaken toward the synthesis of complex naturally occurring macrocycles and great progresses have been made to advance the field of total synthesis. The commonly used synthetic methodologies toward macrocyclization include macrolactonization, macrolactamization, transition metal-catalyzed cross coupling, ring-closing metathesis, and click reaction, among others. Selected recent examples of macrocyclic synthesis of natural products and druglike macrocycles with significant biological relevance are highlighted in each class. The primary goal of this review is to summarize currently used macrocyclic drugs, highlight the therapeutic potential of this underexplored drug class and outline the general synthetic methodologies for the synthesis of macrocycles.
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Affiliation(s)
| | - Dianqing Sun
- Department of Pharmaceutical Sciences, The Daniel K. Inouye College of Pharmacy, University of Hawai’i at Hilo, 34 Rainbow Drive, Hilo, HI 96720, USA; E-Mail:
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12
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Zurwerra D, Glaus F, Betschart L, Schuster J, Gertsch J, Ganci W, Altmann KH. Total Synthesis of (−)-Zampanolide and Structure-Activity Relationship Studies on (−)-Dactylolide Derivatives. Chemistry 2012; 18:16868-83. [DOI: 10.1002/chem.201202553] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2012] [Indexed: 11/07/2022]
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