Carbene Iridium(I) and Iridium(III) Complexes Containing the Metal Center in Different Stereochemical Environments

A workflow for deriving chemical entities from crystallographic data and its application to the Crystallography Open Database

Knowledge about the 3-dimensional structure, orientation and interaction of chemical compounds is important in many areas of science and technology. X-ray crystallography is one of the experimental techniques capable of providing a large amount of structural information for a given compound, and it is widely used for characterisation of organic and metal-organic molecules. The method provides precise 3D coordinates of atoms inside crystals, however, it does not directly deliver information about certain chemical characteristics such as bond orders, delocalization, charges, lone electron pairs or lone electrons. These aspects of a molecular model have to be derived from crystallographic data using refined information about interatomic distances and atom types as well as employing general chemical knowledge. This publication describes a curated automatic pipeline for the derivation of chemical attributes of molecules from crystallographic models. The method is applied to build a catalogue of chemical entities in an open-access crystallographic database, the Crystallography Open Database (COD). The catalogue of such chemical entities is provided openly as a derived database. The content of this catalogue and the problems arising in the fully automated pipeline are discussed, along with the possibilities to introduce manual data curation into the process.

Synthesis and Reactivity of an Anionic Diazoolefin

Bent (hetero)allenes such as carbodicarbenes and carbodiphosphoranes can act as neutral C-donor ligands, and diverse applications in coordination chemistry have been reported. N-Heterocyclic diazoolefins are heterocumulenes, which can function in a similar fashion as L-type ligands. Herein, we describe the synthesis and the reactivity of an anionic diazoolefin. This compound displays distinct reactivity compared to neutral diazoolefins, as evidenced by the preparation of diazo compounds via protonation, alkylation, or silylation. The anionic diazoolefin can be employed as an ambidentate, X-type ligand in salt metathesis reactions with metal halide complexes. Extrusion of dinitrogen was observed in a reaction with PCl(NiPr2 )2 , resulting in a stable phosphinocarbene.

PSb+P Ligand: Platform for a Stibenium to Transition-Metal Interaction

The coordination chemistry of cationic divalent pnictogen ligands, such as nitrenium and phosphenium, has been well-explored in recent years. However, corresponding studies of a heavier congener, stibenium ion, are rare. To better facilitate a Sb⁺-metal interaction, a tridentate P-Sb⁺-P ligand with two phosphine buttresses was designed and synthesized, and its coordination chemistry toward late transition metals was investigated. The stibenium ligand was delivered as an activated P(SbCl)P-AgOTf complex (2) that releases AgCl and the P-Sb⁺-P ligand upon the treatment with transition metals. Reacting 2 with Rh(I) and Ir(I) metals yielded the anticipated stibenium-transition-metal complexes [(Rh(COD)Cl)₂(μ-PSb⁺P)] OTf ([3][OTf]) and [(Ir(COD)Cl)₂(μ-PSb⁺P)] OTf ([4][OTf]). The M-Sb⁺-M bridging structure was confirmed by single-crystal X-ray crystallography, and the bonding situation was examined computationally. Theoretical studies revealed the presence of three-center delocalized M-Sb⁺-M bonding interactions in [3][OTf] and [4][OTf].

Cooperative bond activation reactions with carbene complexes

This review highlights the recent advances in the application of carbene complexes in bond activation reactions via metal–ligand cooperation.

Synthesis, structure, and reactivity of iridium perfluorocarbene complexes: regio- and stereo-specific addition of HCl across a metal carbon double bond

Reductive activation of an α-fluorine in the perfluoroalkyl complexes Cp*(L)(i)Ir-CF2RF using Mg/graphite leads to perfluorocarbene complexes Cp*(L)Ir[double bond, length as m-dash]CFRF (L = CO, PMe3; RF = CF3, C2F5, C6F5). New complexes E-Cp*(PMe3)Ir[double bond, length as m-dash]CFC2F5 and E-Cp*(CO)Ir[double bond, length as m-dash]CFC6F5 have been characterized by single crystal X-ray diffraction studies, and a comparison of metric parameters with previously reported analogues is reported. Experimental NMR and computational DFT (B3LYP/LACV3P**++) studies agree that for Ir[double bond, length as m-dash]CFRF complexes (RF = CF3, CF2CF3) the thermodynamic preference for the E or Z isomer depends on the steric requirements of ligand L; when L = CO the Z-isomer (F cis to Cp*) is preferred and for L = PMe3 the E-isomer is preferred. When reduction of the precursors is carried out in the dark the reaction is completely selective to produce E- or Z-isomers. Exposure of solutions of these compounds to ambient light results in slow conversion to a photostationary non-equilibrium mixture of E and Z isomers. In the dark, these E/Z mixtures convert thermally to their preferred E or Z equilibrium geometries in an even slower reaction. A study of the temperature dependent kinetics of this dark transformation allows ΔG(‡)298 for rotation about the Ir[double bond, length as m-dash]CFCF3 double bond to be experimentally determined as 25 kcal mol(-1); a DFT/B3LYP/LACV3P**++ calculation of this rotation barrier is in excellent agreement (27 kcal mol(-1)) with the experimental value. Reaction of HCl with toluene solutions of Cp*(L)Ir[double bond, length as m-dash]CFRF (L = CO, PMe3) or Cp*(CO)Ir[double bond, length as m-dash]C(CF3)2 at low temperature resulted in regiospecific addition of HCl across the metal carbon double bond, ultimately yielding Cp*(L)Ir(CHFRF)Cl and Cp*(CO)Ir[CH(CF3)2]Cl. Reaction of HCl with single E or Z diastereomers of Cp*(L)Ir[double bond, length as m-dash]CFRF gives stereospecific cis-addition to give single diastereomers of Cp*Ir(L)(CHFRF)Cl; addition of HCl to several different E/Z ratios of Cp*(L)Ir[double bond, length as m-dash]CFRF affords ratios of diastereomeric products Cp*(L)Ir(CHFRF)Cl identical to the original ratio of starting material isomers. The addition of HCl is therefore demonstrated to be unambiguously regio- and stereo-specific. The observed product regiochemistry of addition of HCl to Ir[double bond, length as m-dash]CF2, Ir[double bond, length as m-dash]CFRF, and Ir[double bond, length as m-dash]C(CF3)2 ligands is the same and is not dependent on the ground state energy preference (singlet or triplet) for the free perfluorocarbene. DFT calculations on model HCl addition reactions indicate that this regiochemistry is strongly preferred thermodynamically, but predict that in H(δ+)-Cl(δ-) addition to Cp(PH3)Ir[double bond, length as m-dash]CF2, H(δ+) attack at Ir has a lower energy transition state, while for Cp(PH3)Ir[double bond, length as m-dash]CFCF3 and Cp(PH3)Ir[double bond, length as m-dash]C(CF3)2, H(δ+) attack at C is the kinetically preferred pathway. The carbene carbon atoms in Ir[double bond, length as m-dash]CFCF3 and Ir[double bond, length as m-dash]C(CF3)2 complexes are unambiguously basic towards HCl, while in the Ir[double bond, length as m-dash]CF2 analogues the carbene carbon is less basic than its Ir partner, and the eventual regiochemistry of HCl addition arises from thermodynamic control.

Ligand survey results in identification of PNP pincer complexes of iridium as long-lived and chemoselective catalysts for dehydrogenative borylation of terminal alkynes

Following the report on the successful use of SiNN pincer complexes of iridium as catalysts for dehydrogenative borylation of terminal alkynes (DHBTA) to alkynylboronates, this work examined a wide variety of related pincer ligands in the supporting role in DHBTA. The ligand selection included both new and previously reported ligands and was developed to explore systematic changes to the SiNN framework (the 8-(2-diisopropylsilylphenyl)aminoquinoline). Surprisingly, only the diarylamido/bis(phosphine) PNP system showed any DHBTA reactivity. The specific PNP ligand (bearing two diisopropylphosphino side donors) used in the screen showed DHBTA activity inferior to SiNN. However, taking advantage of the ligand optimization opportunities presented by the PNP system via the changes in the substitution at phosphorus led to the discovery of a catalyst whose activity, longevity, and scope far exceeded that of the original SiNN archetype. Several Ir complexes were prepared in a model PNP system and evaluated as potential intermediates in the catalytic cycle. Among them, the (PNP)Ir diboryl complex and the borylvinylidene complex were shown to be less competent in catalysis and thus likely not part of the catalytic cycle.

A metallacyclic alkyl-amido carbene complex (MCAAC)

The activation of the C≡N moiety in the redox-active metalloligand [CpRu{κ(3)N(pz)-1}][PF6] (2) (1: ambidentate hybrid ligand, N≡C-C(pz)3, with pz = pyrazolyl) was observed in the reaction with [Ir(cod)Cl]2 (cod = 1,5-cyclooctadiene). By performing detailed NMR spectroscopic and X-ray crystallographic investigations the product was found to be a bimetallic Ru(II)-Ir(III) complex of the composition [CpRu{μ-1}Ir(cod)Cl2][PF6] (3) consisting of a chemically modified ligand 1'. Most notably, the heterobimetallic complex 3 features an unprecedented metallacyclic alkyl-amido carbene (MCAAC) core structure, which is coordinated to an Ir(III) centre. Density functional theory (DFT) calculations as well as cyclic voltammetry (CV) studies were performed in an effort to establish the formal oxidation states of the metal atoms in 3. Indeed, a quasi-reversible oxidation wave was detected at E(1/2)(0) = 0.36 V, which was attributed to the Ru(II)/Ru(III) redox couple, while two irreversible reduction processes were observed at very negative potentials and have been assigned to the stepwise reduction of Ir(III) to Ir(I). First efforts to elucidate the reaction mechanism have also been performed.

Metal-ligand multiple bonds as frustrated Lewis pairs for C-H functionalization

The concept of frustrated Lewis pairs (FLPs) has received considerable attention of late, and numerous reports have demonstrated the power of non- or weakly interacting Lewis acid–base pairs for the cooperative activation of small molecules. Although most studies have focused on the use of organic or main-group FLPs that utilize steric encumbrance to prevent adduct formation, a related strategy can be envisioned for both organic and inorganic complexes, in which "electronic frustration" engenders reactivity consistent with both nucleophilic (basic) and electrophilic (acidic) character. Here we propose that such a description is consistent with the behavior of many coordinatively unsaturated transition-metal species featuring metal–ligand multiple bonds, and we further demonstrate that the resultant reactivity may be a powerful tool for the functionalization of C–H and E–H bonds.

Preparation and properties of cyclic and open-chain Sb/N-donor ligands

The preparations of both open-chain and cyclic mixed-donor Sb/N ligands, MeN(CH2-2-C6H4)2SbMe (1), MeN(CH2-2-C6H4SbMe2)2 (2), CH2{CH2N(Me)CH2-2-C6H4SbMe2}2 (3) and CH2{CH2N(Me)CH2-2-C6H4}2SbMe (4), are described via reaction of chlorostibines with dilithio-reagents, and their spectroscopic properties established. Air-stable stibonium derivatives of (3) and (4) have been isolated by treatment of the compounds with excess MeI, which leads to quaternisation at the Sb atoms exclusively. A crystal structure of a bis(stibonium) derivative of (3), [CH2{CH2N(Me)CH2-2-C6H4SbMe3}2]I2, reveals hypervalency at Sb through long-range Sb...N interactions (ca. 2.87 A), giving pseudo-five-membered rings fused to the aromatic rings, and distorted trigonal bipyramidal coordination at Sb. The coordinating properties of compounds (1) to (4) have been investigated through their reactions with Cu(I), Mn(I), Mo(0) and Pt(IV) reagents, and for (1) and (4) by reaction with Fe(0), giving [Fe(CO)4(L)]. The spectroscopic data (IR, 1H, 13C{1H}, 55Mn, 63Cu, 95Mo and 195Pt NMR), mass spectrometry and microanalyses for this series of complexes confirm that coordination occurs via the Sb donor atoms in all cases, with N-coordination only present in fac-[Mn(CO)3(2)](CF3SO3). Crystal structures of [Cu(2)2]BF4, [Mo(CO)4(2)] and [PtMe3I(2)] confirm the coordination modes, showing (2) functioning as a wide-angle bidentate distibine. The structures also show the amine N-donor atoms in the complexes are involved in a hypervalent SbN interaction (ca. 3.0 A) with one of the coordinated Sb atoms in each ligand, leading to significant differences in the conformations of the carbon backbones linking the Sb and N atoms. Reaction of Na3[RhCl6].12H2O with one mol equiv. of (2), (3) or (4) leads to the bis-ligand complex [RhCl2(2)2]Cl and the 1 : 1 Rh : L complexes [RhCl2(3)]Cl and [RhCl3(4)], both of which involve coordination via the Sb and N donor atoms.

Formation of transition metal carbenes using haloalkylzinc reagents

A new reaction of haloalkylzinc compounds, leading to transition metal carbenes, is described; halomethylzinc and halobenzylzinc compounds react with ruthenium and iridium complexes to form methylene and benzylidene complexes, including the Grubbs catalyst.

A general method for preparation of metal carbenes via solution- and polymer-based approaches

A new general, synthetically simple, and safe method for the preparation of metal carbene complexes, which is based on diphenyl sulfonium salts as carbenoid precursors, has been developed, and its scope and applications were studied. In general, deprotonation of a sulfonium salt with a base results in a sulfur ylide, which, in turn, reacts with an appropriate metal precursor to give the corresponding metal carbene complex. Thus, starting from benzyldiphenylsulfonium salt, the complexes (PCX)Rh=CHPh (X = P, N) were prepared in quantitative yield. Syntheses of Grubbs' catalyst, (PCy(3))(2)Cl(2)Ru=CHPh, and of Werner's carbene, [Os(=CHPh)HCl(CO)(P(i)Pr(3))(2)], were achieved by this method. Novel trans-bisphosphine Rh and Ir carbenes, ((i)Pr(3)P)(2)(Cl)M=CHPh, which could not be prepared by other known methods, were synthesized by the sulfur ylide approach. The method is not limited to metal benzylidenes, as demonstrated by the preparation of the Ru vinyl-alkylidene, (PCy(3))(2)Cl(2)Ru=CH-CH=CH(2), methoxycarbonyl-alkylidene, (PCy(3))(2)Cl(2)Ru=CH(CO(2)Me), and alkylidene (PCy(3))(2)Cl(2)Ru=CH(CH(3)), (PCy(3))(2)Cl(2)Ru=CH(2) compounds. The problem of recycling of starting materials as well as the issue of facile purification of the product metal carbene complex were addressed by the synthesis of a polymer-supported diarylsulfide, the carrier of the carbenoid unit in the process. Based on the sulfur ylide route, a methodology for the synthesis of metallocarbenes anchored to a polymer via the carbene ligand, using a commercial Merrifield resin, was developed.

Preparation of five- and six-coordinate aryl(hydrido) iridium(iii) complexes from benzene and functionalized arenes by C–H activation

The reaction of the in situ generated cyclooctene iridium(I) derivative trans-[IrCl(C8H14)(PiPr3)2] with benzene at 80 degrees C gave a mixture of the five-coordinate dihydrido and hydrido(phenyl) iridium(III) complexes [IrH2(Cl)(PiPr3)2] 2 and [IrH(C6H5)(Cl)(PiPr3)2] 3 in the ratio of about 1 : 2. The chloro- and fluoro-substituted arenes C6H5X (X = Cl, F), C6H4F2 and C6H4F(CH3) reacted also by C-H activation to afford the corresponding aryl(hydrido) iridium(III) derivatives [IrH(C6H4X)(Cl)(PiPr3)2] 7, 8, [IrH(C6H3F2)(Cl)(PiPr3)2] 9-11 and [IrH[C6H3F(CH3)](Cl)(PiPr3)2] 12, 13, respectively. The formation of isomeric mixtures had been detected by 1H, 13C, 19F and 31P NMR spectroscopy. Treatment of 3 and 7-13 with CO gave the octahedral carbonyl iridium(III) complexes [IrH(C6H3XX')(Cl)(CO)(PiPr3)2] 5, 14-20 without the elimination of the arene. The reactions of trans-[IrCl(C8H14)(PiPr3)2] with aryl ketones C6H5C(O)R (R = Me, Ph), aryl ketoximes C6H5C(NOH)R (R = Me, Ph) and benzaloxime C6H5C(NOH)H resulted in the formation of six-coordinate aryl(hydrido) iridium(III) compounds 21-25 with the aryl ligand coordinated in a bidentate kappa2-C,O or kappa2-C,N fashion. With C6H5C(O)NH2 as the substrate, the two isomers [IrH[kappa2-N,O-NHC(O)C6H5](Cl)(PiPr3)2] 26 and [IrH[kappa2-C,O-C6H4C(O)NH2](Cl)(PiPr3)2] 27 were prepared stepwise. Treatment of trans-[IrCl(C8H14)(PiPr3)2] with benzoic acid gave the benzoato(hydrido) complex [IrH[kappa2-O,O-O2CC6H5](Cl)(PiPr3)2] 29 which did not rearrange to the kappa2-C,O isomer.

Synthesis and properties of Rh(i) and Ir(i) distibine complexes with organometallic co-ligands

The first series of Rh(I) distibine complexes with organometallic co-ligands is described, including the five-coordinate [Rh(cod)(distibine)Cl], the 16-electron planar cations [Rh(cod)(distibine)]BF4 and [Rh{Ph2Sb(CH2)3SbPh2}2]BF4 and the five-coordinate [Rh(CO)(distibine)2][Rh(CO)2Cl2] (distibine=R2Sb(CH2)3SbR2, R=Ph or Me, and o-C6H4(CH2SbMe2)2). The corresponding Ir(I) species [Ir(cod)(distibine)]BF4 and [Ir{Ph2Sb(CH2)3SbPh2}2]BF4 have also been prepared. The complexes have been characterised by 1H and 13C{1H} NMR and IR spectroscopy, electrospray mass spectrometry and microanalysis. The crystal structure of the anion exchanged [Rh(CO){Ph2Sb(CH2)3SbPh2}2]PF(6).3/4CH2Cl2 is also described. The methyl-substituted distibine complexes are less stable than the complexes of Ph2Sb(CH2)3SbPh2, with C-Sb fission occurring in some of the complexes of the former. The salts [Rh(CO){Ph2Sb(CH2)3SbPh2}2]PF6 and [Rh{Ph2Sb(CH2)3SbPh2}2]BF4 undergo oxidative addition with Br2 to give the known [RhBr2{Ph2Sb(CH2)3SbPh2}2]+, while using HCl gives the same hydride complex from both precursors, which is tentatively assigned as [RhHCl2{Ph2Sb(CH2)3SbPh2}]. An unexpected further Rh(III) product from this reaction, trans-[RhCl2{Ph2Sb(CH2)3SbPh2}{PhClSb(CH2)3SbClPh}]Cl, was identified by a crystal structure analysis and represents the first structurally characterised example of a chlorostibine coordinated to a metal. [Rh{Ph2Sb(CH2)3SbPh2}2]BF4 reacts with CO to give [Rh(CO){Ph2Sb(CH2)3SbPh2}2]BF4 initially, and upon further exposure this species undergoes further reversible carbonylation to give a cis-dicarbonyl species thought to be [Rh(CO)2{Ph2Sb(CH2)3SbPh2}{kappa1Sb-Ph2Sb(CH2)3SbPh2}]BF4 which converts back to the monocarbonyl complex when the CO atmosphere is replaced with N2.

Iridium(III) Complexes Formed by O−H and/Or C−H Activation of 2-(Arylazo)phenols

Reaction of 2-(arylazo)phenols with [Ir(PPh(3))(3)Cl] in refluxing ethanol in the presence of a base (NEt(3)) affords complexes of three different types, viz. [Ir(PPh(3))(2)(NO-R)(H)Cl] (R = OCH(3), CH(3), H, Cl and NO(2)), [Ir(PPh(3))(2)(NO-R)(H)(2)] and [Ir(PPh(3))(2)(CNO-R)(H)]. Structures of the [Ir(PPh(3))(2)(NO-Cl)(H)Cl], [Ir(PPh(3))(2)(NO-Cl)(H)(2)] and [Ir(PPh(3))(2)(CNO-Cl)(H)] complexes have been determined by X-ray crystallography. In the [Ir(PPh(3))(2)(NO-R)(H)Cl] and [Ir(PPh(3))(2)(NO-R)(H)(2)] complexes, the 2-(arylazo)phenolate ligands are coordinated to the metal center as monoanionic bidentate N,O-donors, whereas in the [Ir(PPh(3))(2)(CNO-R)(H)] complexes, they are coordinated to iridium as dianionic tridentate C,N,O-donors. In all three products formed in ethanol, the two PPh(3) ligands are trans. Reaction of 2-(arylazo)phenols with [Ir(PPh(3))(3)Cl] in refluxing toluene in the presence of NEt(3) affords complexes of two types, viz. [Ir(PPh(3))(2)(CNO-R)(H)] and [Ir(PPh(3))(2)(CNO-R)Cl]. Structure of the [Ir(PPh(3))(2)(CNO-Cl)Cl] complex has been determined by X-ray crystallography, and the 2-(arylazo)phenolate ligand is coordinated to the metal center as a dianionic tridentate C,N,O-donor and the two PPh(3) ligands are cis. All of the iridium(III) complexes show intense MLCT transitions in the visible region. Cyclic voltammetry shows an Ir(III)-Ir(IV) oxidation on the positive side of SCE and an Ir(III)-Ir(II) reduction on the negative side for all of the products.

Metallacarbenes from diazoalkanes: an experimental and computational study of the reaction mechanism

PCP ligand (1,3-bis-[(diisopropyl-phosphanyl)-methyl]-benzene), and PCN ligand ([3-[(di-tert-butyl-phosphanyl)-methyl]-benzyl]-diethyl-amine) based rhodium dinitrogen complexes (1 and 2, respectively) react with phenyl diazomethane at room temperature to give PCP and PCN-Rh carbene complexes (3 and 5, respectively). At low temperature (-70 degrees C), PCP and PCN phenyl diazomethane complexes (4 and 6, respectively) are formed upon addition of phenyl diazomethane to 1 and 2. In these complexes, the diazo moiety is eta(1) coordinated through the terminal nitrogen atom. Decomposition of complexes 4 and 6 at low temperatures leads only to a relatively small amount of the corresponding carbene complexes, the major products of decomposition being the dinitrogen complexes 1 and 2 and stilbene. This and competition experiments (decomposition of 6 in the presence of 1) suggests that phenyl diazomethane can dissociate under the reaction conditions and attack the metal center through the diazo carbon producing a eta(1)-C bound diazo complex. Computational studies based on a two-layer ONIOM model, using the mPW1K exchange-correlation functional and a variety of basis sets for PCP based systems, provide mechanistic insight. In the case of less bulky PCP ligand bearing H-substituents on the phosphines, a variety of mechanisms are possible, including both dissociative and nondissociative pathways. On the other hand, in the case of i-Pr substituents, the eta(1)-C bound diazo complex appears to be a critical intermediate for carbene complex formation, in good agreement with the experimental results. Our results and the analysis of reported data suggest that the outcome of the reaction between a diazoalkane and a late transition metal complex can be anticipated considering steric requirements relevant to eta(1)-C diazo complex formation.