1
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Li H, Zhang B, Feng R, Guo S. An N-heterocyclic carbene-based pincer system of palladium and its versatile reactivity under oxidizing conditions. Dalton Trans 2024; 53:11470-11480. [PMID: 38912609 DOI: 10.1039/d4dt00980k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/25/2024]
Abstract
NHC-based pincers (NHC = N-heterocyclic carbene) have been broadly employed as supporting platforms, and their palladium complexes have found many synthetic applications. However, previous studies mainly focused on the NHC pincers of palladium featuring an oxidation number of +II. In contrast, oxidation of these well-defined Pd(II) species and the study of their fundamental high-valent Pd chemistry remain largely undeveloped. In addition, from a perspective of PdII/PdIV catalysis, the reactivity and degradation of NHC pincers in catalytically relevant reactions have not been well understood. In this work, a series of Pd(II) complexes supported by a well-known NHC^Aryl^NHC pincer platform have been prepared. Their reactivity towards various oxidizing reagents, including halogen surrogates, electrophilic fluorine reagents, and alkyl/aryl halides, has been examined. In some cases, ambient-characterizable high-valent Pd NHCs, which have been scarcely reported, were obtained. The carbenes incorporated into the pincer framework proved to be effective spectator donors. In contrast, the central aryl moiety exhibits versatile reactivity and collapse pathways, allowing it to function either as a spectator or a non-innocent actor.
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Affiliation(s)
- Haobin Li
- Department of Chemistry, Capital Normal University, Beijing 100048, China.
| | - Bo Zhang
- Department of Chemistry, Capital Normal University, Beijing 100048, China.
| | - Rui Feng
- Department of Chemistry, Capital Normal University, Beijing 100048, China.
| | - Shuai Guo
- Department of Chemistry, Capital Normal University, Beijing 100048, China.
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2
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Jaklová Dytrtová J, Bělonožníková K, Jakl M, Chmelík J, Kovač I, Ryšlavá H. Non-target biotransformation enzymes as a target for triazole-zinc mixtures. Chem Biol Interact 2023; 382:110625. [PMID: 37422065 DOI: 10.1016/j.cbi.2023.110625] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Revised: 06/30/2023] [Accepted: 07/05/2023] [Indexed: 07/10/2023]
Abstract
Triazoles inhibit lanosterol 14α-demethylase and block ergosterol biosynthesis in fungal pathogens. However, they also interact with other cytochrome P450 enzymes and influence non-target metabolic pathways. Disturbingly, triazoles may interact with essential elements. The interaction of penconazole (Pen), cyproconazole (Cyp) and tebuconazole (Teb) with Zn2+ results in the formation of deprotonated ligands in their complexes or in the creation of complexes with Cl- as a counterion or doubly charged complexes. Triazoles, as well as their equimolar cocktails with Zn2+ (10-6 mol/L), decreased the activities of the non-target enzymes CYP19A1 and CYP3A4. Pen most decreased CYP19A1 activity and was best bound to its active centre to block the catalytic cycle in computational analysis. For CYP3A4, Teb was found to be the most effective inhibitor by both, activity assay and interaction with the active centre. Teb/Cyp/Zn2+ and Teb/Pen/Cyp/Zn2+ cocktails also decreased the CYP19A1 activity, which was in correlation with the formation of numerous triazole-Zn2+ complexes.
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Affiliation(s)
- Jana Jaklová Dytrtová
- Charles University, Faculty of Physical Education and Sport, Sport Sciences-Biomedical Department, José Martího 269/31, 162 52, Prague 6, Czech Republic.
| | - Kateřina Bělonožníková
- Charles University, Faculty of Science, Department of Biochemistry, Hlavova 2030/8, 128 43, Prague 2, Czech Republic
| | - Michal Jakl
- Czech University of Life Sciences Prague, Faculty of Agrobiology, Food and Natural Resources, Department of Agroenvironmental Chemistry and Plant Nutrition, Kamýcká 129, 165 00, Prague, Suchdol, Czech Republic
| | - Josef Chmelík
- Charles University, Faculty of Science, Department of Biochemistry, Hlavova 2030/8, 128 43, Prague 2, Czech Republic; Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague 4, Czech Republic
| | - Ishak Kovač
- Charles University, Faculty of Physical Education and Sport, Sport Sciences-Biomedical Department, José Martího 269/31, 162 52, Prague 6, Czech Republic; Charles University, Faculty of Science, Department of Analytical Chemistry, Hlavova 2030/8, 128 43, Prague 2, Czech Republic
| | - Helena Ryšlavá
- Charles University, Faculty of Science, Department of Biochemistry, Hlavova 2030/8, 128 43, Prague 2, Czech Republic
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3
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Martínez-Haya B, Avilés-Moreno JR, Gámez F, Martens J, Oomens J, Berden G. A Dynamic Proton Bond: MH +·H 2O ⇌ M·H 3O + Interconversion in Loosely Coordinated Environments. J Phys Chem Lett 2023; 14:1294-1300. [PMID: 36723385 PMCID: PMC9923742 DOI: 10.1021/acs.jpclett.2c03832] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2022] [Accepted: 01/26/2023] [Indexed: 06/18/2023]
Abstract
The interaction of organic molecules with oxonium cations within their solvation shell may lead to the emergence of dynamic supramolecular structures with recurrently changing host-guest chemical identity. We illustrate this phenomenon in benchmark proton-bonded complexes of water with polyether macrocyles. Despite the smaller proton affinity of water versus the ether group, water in fact retains the proton in the form of H3O+, with increasing stability as the coordination number increases. Hindrance in many-fold coordination induces dynamic reversible (ether)·H3O+ ⇌ (etherH+)·H2O interconversion. We perform infrared action ion spectroscopy over a broad spectral range to expose the vibrational signatures of the loose proton bonding in these systems. Remarkably, characteristic bands for the two limiting proton bonding configurations are observed in the experimental vibrational spectra, superimposed onto diffuse bands associated with proton delocalization. These features cannot be described by static equilibrium structures but are accurately modeled within the framework of ab initio molecular dynamics.
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Affiliation(s)
- Bruno Martínez-Haya
- Department
of Physical, Chemical and Natural Systems, Universidad Pablo de Olavide, 41013 Seville, Spain
| | | | - Francisco Gámez
- Departamento
de Química Física, Universidad Complutense, 28040 Madrid, Spain
| | - Jonathan Martens
- Institute
for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, 6525ED Nijmegen, The Netherlands
| | - Jos Oomens
- Institute
for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, 6525ED Nijmegen, The Netherlands
| | - Giel Berden
- Institute
for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, 6525ED Nijmegen, The Netherlands
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4
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Affiliation(s)
- Martin Mayer
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie, Universität Leipzig, Linnéstraße 2, 04103 Leipzig, Germany
| | - Knut R. Asmis
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie, Universität Leipzig, Linnéstraße 2, 04103 Leipzig, Germany
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5
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Ting MYC, Yunker LPE, Chagunda IC, Hatlelid K, Vieweg M, McIndoe JS. A mechanistic investigation of the Suzuki polycondensation reaction using MS/MS methods. Catal Sci Technol 2021. [DOI: 10.1039/d1cy00743b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The Suzuki polycondensation can be studied in real time using MS/MS methods, even with the molecular weight of the reaction components changing with every turnover.
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Affiliation(s)
| | | | | | | | - Meghan Vieweg
- Department of Chemistry
- University of Victoria
- Victoria
- Canada
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6
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Jaklová Dytrtová J, Bělonožníková K, Jakl M, Ryšlavá H. Triazoles and aromatase: The impact of copper cocktails. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2020; 266:115201. [PMID: 32693302 DOI: 10.1016/j.envpol.2020.115201] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Revised: 06/30/2020] [Accepted: 07/05/2020] [Indexed: 06/11/2023]
Abstract
Triazoles are used as antifungal agents, they mostly inhibit two enzymes: 14α-demethylase and aromatase. These enzymes are utilised also in other species and therefore the affection in non-target species in the environment is expected as well. Besides, triazoles are often being applied in a mixture and they can also interact with other substances present. This study clarifies how three selected representative triazoles (tebuconazole, penconazole and cyproconazole) interact with each other (group effect) and in mixtures (cocktail effect) with copper, essential/toxic for all organisms. Within the experiments on electrospray and collision-induced dissociations (both ESI-MS), it has been found that the fragments correspond to typical triazole metabolites. For their formation, the presence of copper ions is crucial. The inhibitory effect of Cu cocktails on aromatase enzymatic activity has been studied. The presence of Cu ions together with triazole(s) significantly increases the inhibitory effect on aromatase activity. The highest inhibitory effect (more than 60%) on aromatase activity is produced by cocktails containing penconazole and Cu ions, namely by penconazole/Cu and penconazole/tebuconazole/Cu. The reactivity of triazoles in groups is not significantly affected by the interactions among them. Additionally, the role of triazoles in copper Fenton reaction regulation has been observed and described. These changes may be attributed to the formation and stabilization of the complexes with the central Cu ion, with usually one, two or three triazolic ligands, depending on the mixture. The study demonstrates that the interaction of triazoles and Cu ions is a complex process; their impact on metabolism seems to be rather extensive and must be evaluated in the context of biochemical reactions.
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Affiliation(s)
- Jana Jaklová Dytrtová
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo nám. 542/2, 166 10, Prague 6, Czech Republic; Charles University, Faculty of Physical Education and Sport, Department of Physiology and Biochemistry, José Martího 269/31, 162 52, Prague 6, Czech Republic.
| | - Kateřina Bělonožníková
- Charles University, Faculty of Science, Department of Biochemistry, Hlavova 2030, 128 43, Prague 2, Czech Republic
| | - Michal Jakl
- Czech University of Life Sciences Prague, Faculty of Agrobiology, Food and Natural Resources, Department of Agro-Environmental Chemistry and Plant Nutrition, Kamýcká 129, 165 00, Prague - Suchdol, Czech Republic
| | - Helena Ryšlavá
- Charles University, Faculty of Science, Department of Biochemistry, Hlavova 2030, 128 43, Prague 2, Czech Republic
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7
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Koessler K, Scherer H, Butschke B. Phenyl-Group Exchange in Triphenylphosphine Mediated by Cationic Gold-Platinum Complexes-A Gas-Phase Mimetic Approach. Inorg Chem 2020; 59:9496-9510. [PMID: 32124602 DOI: 10.1021/acs.inorgchem.9b03622] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
The PPh3 ligands in the heterodinuclear AuPt complex [(Ph3P)AuPt(PPh3)3][BAr4F] (BAr4F = tetrakis[3,5-bis(trifluoromethyl)phenyl]borate) exhibit a high fluxionality on the AuPt core. Fast intramolecular and slow intermolecular processes for the reversible exchange of the PPh3 ligands have been identified. When [(Ph3P)AuPt(PPh3)3][BAr4F] is heated in solution, the formation of benzene is observed, and a trinuclear, cationic AuPt2 complex is generated. This process is preceded by reversible phenyl-group exchange between the PPh3 ligands present in the reaction mixture as elucidated by deuterium-labeling studies. Both the elimination of benzene and the preceding reversible phenyl-group exchange have originally been observed in mass-spectrometry-based CID experiments (CID = Collision-Induced Dissociation). While CID of mass-selected [Au,Pt,(PPh3)4]+ results exclusively in the loss of PPh3, the resulting cation [Au,Pt,(PPh3)3]+ selectively eliminates C6H6. Thus, the dissociation of a PPh3 ligand from [Au,Pt,(PPh3)3]+ is energetically not able to compete with processes which result in C-H- and C-P-bond cleavage. In both media, the heterobimetallic nature of the employed complexes is the key for the observed reactivity. Only the intimate interplay of the gas-phase investigations, studies in solution, and thorough DFT computations allowed for the elucidation of the mechanistic details of the reactivity of [(Ph3P)AuPt(PPh3)3][BAr4F].
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Affiliation(s)
- Konstantin Koessler
- Albert-Ludwigs-Universität Freiburg, Institut für Anorganische und Analytische Chemie, Albertstr. 21, 79104 Freiburg, Germany
| | - Harald Scherer
- Albert-Ludwigs-Universität Freiburg, Institut für Anorganische und Analytische Chemie, Albertstr. 21, 79104 Freiburg, Germany
| | - Burkhard Butschke
- Albert-Ludwigs-Universität Freiburg, Institut für Anorganische und Analytische Chemie, Albertstr. 21, 79104 Freiburg, Germany
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8
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Kovač I, Jakl M, Fanfrlík J, Andrushchenko V, Jaklová Dytrtová J. Complexation and stability of the fungicide penconazole in the presence of zinc and copper ions. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2020; 34:e8714. [PMID: 31880851 DOI: 10.1002/rcm.8714] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2019] [Revised: 12/03/2019] [Accepted: 12/23/2019] [Indexed: 06/10/2023]
Abstract
RATIONALE For the risk assessment of penconazole in the environment and the evaluation of the possible consequences of its use, it is important to determine how its reactivity and degradation are influenced by metals commonly found in nature, such as copper and zinc. METHODS Changes in the reactivity of penconazole in the presence of zinc/copper ions were studied using electrospray ionisation mass spectrometry and density functional theory calculations. RESULTS Many penconazole complexes with copper and zinc ions were created; a comparison of the elements showed that a few complexes were formed analogously (doubly charged complexes with four penconazole molecules, singly charged complexes with chlorine as a counterion and singly charged complexes with deprotonated penconazole as a counterion). The metal complexes with different structures indicated different reactivity of penconazole with copper and zinc. CONCLUSIONS The experimental and computational approaches have revealed different changes in the structure of penconazole. In the Zn(II) complex, penconazole deprotonated to stabilise the bond to Zn(II). In the Cu(II) complex, it loses one chlorine atom, creates an additional ring between the triazole ring and the phenyl ring, and/or creates a double bond in the short aliphatic chain.
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Affiliation(s)
- Ishak Kovač
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic
- UNESCO Laboratory of Environmental Electrochemistry, Department of Analytical Chemistry, Faculty of Science, Charles University, Prague, Czech Republic
| | - Michal Jakl
- Department of Agro-Environmental Chemistry and Plant Nutrition, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Prague - Suchdol, Czech Republic
| | - Jindřich Fanfrlík
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic
| | - Valery Andrushchenko
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic
| | - Jana Jaklová Dytrtová
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic
- Department of Physiology and Biochemistry, Faculty of Physical Education and Sport, Charles University, Prague, Czech Republic
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9
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Paul M, Detmar E, Schlangen M, Breugst M, Neudörfl JM, Schwarz H, Berkessel A, Schäfer M. Intermediates of N-Heterocyclic Carbene (NHC) Dimerization Probed in the Gas Phase by Ion Mobility Mass Spectrometry: C-H⋅⋅⋅:C Hydrogen Bonding Versus Covalent Dimer Formation. Chemistry 2019; 25:2511-2518. [PMID: 30488654 DOI: 10.1002/chem.201803641] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2018] [Revised: 11/27/2018] [Indexed: 11/06/2022]
Abstract
N-Heterocyclic carbenes (NHCs, :C) can interact with azolium salts (C-H+ ) by either forming a hydrogen-bonded aggregate (CHC+ ) or a covalent C-C bond (CCH+ ). In this study, the intramolecular NHC-azolium salt interactions of aromatic imidazolin-2-ylidenes and saturated imidazolidin-2-ylidenes have been investigated in the gas phase by traveling wave ion mobility mass spectrometry (TW IMS) and DFT calculations. The TW IMS experiments provided evidence for the formation of these important intermediates in the gas phase, and they identified the predominant aggregation mode (hydrogen bond vs. covalent C-C) as a function of the nature of the interacting carbene-azolium pairs.
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Affiliation(s)
- Mathias Paul
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstrasse 4, 50939, Cologne, Germany
| | - Eric Detmar
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstrasse 4, 50939, Cologne, Germany
| | - Maria Schlangen
- Institute of Chemistry, Technical University Berlin, Straße des 17. Juni 115, 10623, Berlin, Germany
| | - Martin Breugst
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstrasse 4, 50939, Cologne, Germany
| | - Jörg-Martin Neudörfl
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstrasse 4, 50939, Cologne, Germany
| | - Helmut Schwarz
- Institute of Chemistry, Technical University Berlin, Straße des 17. Juni 115, 10623, Berlin, Germany
| | - Albrecht Berkessel
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstrasse 4, 50939, Cologne, Germany
| | - Mathias Schäfer
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstrasse 4, 50939, Cologne, Germany
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10
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Chen X, Li Q, Gong Y. Formation and Characterization of Zr 4+ Stabilized by Neutral Tridentate Ligands in the Gas Phase. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2018; 29:2327-2332. [PMID: 30141129 DOI: 10.1007/s13361-018-2057-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2018] [Revised: 08/07/2018] [Accepted: 08/09/2018] [Indexed: 06/08/2023]
Abstract
Ligated tetrapositive metal ions are rare gas-phase species which tend to form complexes with lower charges due to the high 4th ionization energies of metals. We report the observation of tetrapositive Zr(TMPDA)34+ and Zr(TMOGA)34+ complexes in the gas phase by electrospray ionization of Zr(ClO4)4/TMPDA and Zr(ClO4)4/TMOGA mixtures. The Zr4+ center in both complexes is coordinated by nine atoms from three neutral diamide ligands forming nine-coordinate twisted tricapped trigonal prismatic geometry on the basis of DFT calculations. Collision-induced dissociation of both complexes resulted in the loss of protonated ligands to form tripositive Zr(TMPDA)(TMPDA-H)3+ and Zr(TMOGA)(TMOGA-H)3+ products which retain the IV oxidation state of zirconium at the cost of charge reduction from 4+ to 3+ of the whole complexes. The very high 4th ionization energy of zirconium (34.34 eV) makes tetrapositive zirconium complex the most challenging tetracation to be stabilized against charge reduction in the gas phase to date. Graphical abstract ᅟ.
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Affiliation(s)
- Xiuting Chen
- Department of Radiochemistry, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Qingnuan Li
- Department of Radiochemistry, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, China
| | - Yu Gong
- Department of Radiochemistry, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, China.
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11
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Weske S, Schoop R, Koszinowski K. The Role of Ate Complexes in the Copper-Mediated Trifluoromethylation of Alkynes. Chemistry 2016; 22:11310-6. [PMID: 27385188 DOI: 10.1002/chem.201601261] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2016] [Indexed: 01/30/2023]
Abstract
Trifluoromethylation reactions have recently received increased attention because of the beneficial effect of the trifluoromethyl group on the pharmacological properties of numerous substances. A common method to introduce the trifluoromethyl group employs the Ruppert-Prakash reagent, that is, Si(CH3 )3 CF3 , together with a copper(I) halide. We have applied this method to the trifluoromethylation of aromatic alkynes and used electrospray-ionization mass spectrometry to investigate the mechanism of these reactions in tetrahydrofuran, dichloromethane, and acetonitrile as well as with and without added 1,10-phenanthroline. In the absence of the alkyne component, the homoleptic ate complexes [Cu(CF3 )2 ](-) and [Cu(CF3 )4 ](-) were observed. In the presence of the alkynes RH, the heteroleptic complexes [Cu(CF3 )3 R](-) were detected as well. Upon gas-phase fragmentation, these key intermediates released the cross-coupling products R-CF3 with perfect selectivity. Apparently, the [Cu(CF3 )3 R](-) complexes did not originate from homoleptic cuprate anions, but from unobservable neutral precursors. The present results moreover point to the involvement of oxygen as the oxidizing agent.
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Affiliation(s)
- Sebastian Weske
- Institut für Organische und Biomolekulare Chemie, Georg-August-Universität Göttingen, Tammanstraße 2, 37077, Göttingen, Germany
| | - Ramona Schoop
- Institut für Organische und Biomolekulare Chemie, Georg-August-Universität Göttingen, Tammanstraße 2, 37077, Göttingen, Germany
| | - Konrad Koszinowski
- Institut für Organische und Biomolekulare Chemie, Georg-August-Universität Göttingen, Tammanstraße 2, 37077, Göttingen, Germany.
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12
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Zavras A, Khairallah GN, Krstić M, Girod M, Daly S, Antoine R, Maitre P, Mulder RJ, Alexander SA, Bonačić-Koutecký V, Dugourd P, O'Hair RAJ. Ligand-induced substrate steering and reshaping of [Ag2(H)](+) scaffold for selective CO2 extrusion from formic acid. Nat Commun 2016; 7:11746. [PMID: 27265868 PMCID: PMC4897753 DOI: 10.1038/ncomms11746] [Citation(s) in RCA: 60] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2015] [Accepted: 04/26/2016] [Indexed: 12/02/2022] Open
Abstract
Metalloenzymes preorganize the reaction environment to steer substrate(s) along the required reaction coordinate. Here, we show that phosphine ligands selectively facilitate protonation of binuclear silver hydride cations, [LAg2(H)]+ by optimizing the geometry of the active site. This is a key step in the selective, catalysed extrusion of carbon dioxide from formic acid, HO2CH, with important applications (for example, hydrogen storage). Gas-phase ion-molecule reactions, collision-induced dissociation (CID), infrared and ultraviolet action spectroscopy and computational chemistry link structure to reactivity and mechanism. [Ag2(H)]+ and [Ph3PAg2(H)]+ react with formic acid yielding Lewis adducts, while [(Ph3P)2Ag2(H)]+ is unreactive. Using bis(diphenylphosphino)methane (dppm) reshapes the geometry of the binuclear Ag2(H)+ scaffold, triggering reactivity towards formic acid, to produce [dppmAg2(O2CH)]+ and H2. Decarboxylation of [dppmAg2(O2CH)]+ via CID regenerates [dppmAg2(H)]+. These gas-phase insights inspired variable temperature NMR studies that show CO2 and H2 production at 70 °C from solutions containing dppm, AgBF4, NaO2CH and HO2CH. Designing catalysts and understanding the influence of ligands for particular transformations remains a highly challenging task. Here, the authors show that bisphosphine ligands can alter the geometry of the active site in silver catalysts, driving protonation and ultimately extrusion of carbon dioxide from formic acid.
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Affiliation(s)
- Athanasios Zavras
- School of Chemistry and Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, 30 Flemington Road, Parkville, Victoria 3010, Australia.,ARC Centre of Excellence for Free Radical Chemistry and Biotechnology, 30 Flemington Road, Parkville, Victoria 3010, Australia
| | - George N Khairallah
- School of Chemistry and Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, 30 Flemington Road, Parkville, Victoria 3010, Australia.,ARC Centre of Excellence for Free Radical Chemistry and Biotechnology, 30 Flemington Road, Parkville, Victoria 3010, Australia
| | - Marjan Krstić
- Center of Excellence for Science and Technology - Integration of Mediterranean region (STIM) at Interdisciplinary Center for Advanced Science and Technology (ICAST), University of Split, Meštrovićevo šetalište 45, 21000 Split, Croatia
| | - Marion Girod
- Institut des Sciences Analytiques, Université de Lyon, Université Lyon 1-CNRS-ENS Lyon, 69100 Villeurbanne, France
| | - Steven Daly
- Institut Lumière Matière, Université Lyon 1-CNRS, Université de Lyon 69622 Villeurbanne Cedex, France
| | - Rodolphe Antoine
- Institut Lumière Matière, Université Lyon 1-CNRS, Université de Lyon 69622 Villeurbanne Cedex, France
| | - Philippe Maitre
- Laboratoire de Chimie Physique, Bâtiment 349, Université Paris-Sud, CNRS, Université Paris-Saclay, F-91405 Orsay, France
| | - Roger J Mulder
- CSIRO Manufacturing, Bayview Avenue, Clayton, Victoria 3168, Australia
| | - Stefanie-Ann Alexander
- School of Chemistry and Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, 30 Flemington Road, Parkville, Victoria 3010, Australia.,ARC Centre of Excellence for Free Radical Chemistry and Biotechnology, 30 Flemington Road, Parkville, Victoria 3010, Australia
| | - Vlasta Bonačić-Koutecký
- Center of Excellence for Science and Technology - Integration of Mediterranean region (STIM) at Interdisciplinary Center for Advanced Science and Technology (ICAST), University of Split, Meštrovićevo šetalište 45, 21000 Split, Croatia.,Humboldt-Universität Berlin, Institut für Chemie, 12489 Berlin, Germany
| | - Philippe Dugourd
- Institut Lumière Matière, Université Lyon 1-CNRS, Université de Lyon 69622 Villeurbanne Cedex, France
| | - Richard A J O'Hair
- School of Chemistry and Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, 30 Flemington Road, Parkville, Victoria 3010, Australia.,ARC Centre of Excellence for Free Radical Chemistry and Biotechnology, 30 Flemington Road, Parkville, Victoria 3010, Australia
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13
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Iacobucci C, Reale S, De Angelis F. Elusive Reaction Intermediates in Solution Explored by ESI-MS: Reverse Periscope for Mechanistic Investigations. Angew Chem Int Ed Engl 2016; 55:2980-93. [DOI: 10.1002/anie.201507088] [Citation(s) in RCA: 91] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2015] [Revised: 09/18/2015] [Indexed: 01/02/2023]
Affiliation(s)
- Claudio Iacobucci
- Dipartimento di Scienze Fisiche e Chimiche; Università dell'Aquila; Via Vetoio, Coppito 67100 L'Aquila Italy
| | - Samantha Reale
- Dipartimento di Scienze Fisiche e Chimiche; Università dell'Aquila; Via Vetoio, Coppito 67100 L'Aquila Italy
| | - Francesco De Angelis
- Dipartimento di Scienze Fisiche e Chimiche; Università dell'Aquila; Via Vetoio, Coppito 67100 L'Aquila Italy
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14
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Iacobucci C, Reale S, De Angelis F. Elektrospray-Massenspektrometrie: ein umgekehrtes Periskop zur Erforschung von Reaktionsmechanismen in Lösung. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201507088] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Claudio Iacobucci
- Dipartimento di Scienze Fisiche e Chimiche; Università dell'Aquila; Via Vetoio, Coppito 67100 L'Aquila Italien
| | - Samantha Reale
- Dipartimento di Scienze Fisiche e Chimiche; Università dell'Aquila; Via Vetoio, Coppito 67100 L'Aquila Italien
| | - Francesco De Angelis
- Dipartimento di Scienze Fisiche e Chimiche; Università dell'Aquila; Via Vetoio, Coppito 67100 L'Aquila Italien
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15
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Tsybizova A, Roithová J. Copper-catalyzed reactions: Research in the gas phase. MASS SPECTROMETRY REVIEWS 2016; 35:85-110. [PMID: 25975564 DOI: 10.1002/mas.21464] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2014] [Accepted: 12/19/2014] [Indexed: 06/04/2023]
Abstract
Electrospray ionization mass spectrometry (ESI-MS) is becoming an important tool for mechanistic studies in organic and organometallic chemistry. It allows investigation of reaction mixtures including monitoring of reactants, products, and intermediates, studying properties of the intermediates and their reactivity. Studying the reactive species in the gas phase can be advantageously combined with theoretical calculations. This review is focused on ESI-MS studies of copper-catalyzed reactions. Possible effects of the electrospray process on the transfer of the copper complexes to the gas phase are discussed. The plethora of mass spectrometric approaches is demonstrated on copper mediated C-H activations, cross coupling reactions, rearrangements, organocuprate chemistry, and other examples.
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Affiliation(s)
- Alexandra Tsybizova
- Department of Organic Chemistry, Charles University in Prague, Faculty of Science; Hlavova 2030, 128 40 Prague 2, Czech Republic
| | - Jana Roithová
- Department of Organic Chemistry, Charles University in Prague, Faculty of Science; Hlavova 2030, 128 40 Prague 2, Czech Republic
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16
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Tsedilin AM, Fakhrutdinov AN, Eremin DB, Zalesskiy SS, Chizhov AO, Kolotyrkina NG, Ananikov VP. How sensitive and accurate are routine NMR and MS measurements? MENDELEEV COMMUNICATIONS 2015. [DOI: 10.1016/j.mencom.2015.11.019] [Citation(s) in RCA: 73] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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17
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Sun H, Chai Y, Jin Z, Sun C, Pan Y. Gas-phase intramolecular cyclization of argentinated N-allylbenzamides. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2015; 26:826-832. [PMID: 25707590 DOI: 10.1007/s13361-015-1079-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2014] [Revised: 12/20/2014] [Accepted: 01/13/2015] [Indexed: 06/04/2023]
Abstract
The fragmentations of argentinated N-allylbenzamides have been exhaustively studied through collision-induced dissociation and through deuterium labeling. The intriguing elimination of AgOH is certified as the consequence of intramolecular cyclization between terminal olefin and carbonyl carbon following proton transfer to carbonyl oxygen, rather than simple enolization of amide. Linear free energy correlations and density functional theory (DFT) calculations were performed to understand the competitive relationship between AgOH loss and AgH loss, which results from the 1,2-elimination of α-hydrogen (to the amido nitrogen) with the silver.
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Affiliation(s)
- Hezhi Sun
- Department of Chemistry, Zhejiang University, Hangzhou, 310027, Zhejiang, China
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18
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Sun H, Jin Z, Quan H, Sun C, Pan Y. Gas phase chemistry of N-benzylbenzamides with silver(i) cations: characterization of benzylsilver cation. Org Biomol Chem 2015; 13:2561-5. [DOI: 10.1039/c4ob02355b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Benzylsilver cations are synthesized in the gas phase from the collisional dissociation of argentinated N-benzylbenzamides, when the carbonyl oxygen nucleophilically attacks an α-hydrogen.
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Affiliation(s)
- Hezhi Sun
- Department of Chemistry
- Zhejiang University
- Hangzhou 310027
- China
| | - Zhe Jin
- Department of Chemistry
- Zhejiang University
- Hangzhou 310027
- China
| | - Hong Quan
- College of Pharmaceutical Sciences
- Zhejiang University
- Hangzhou 310058
- China
| | - Cuirong Sun
- College of Pharmaceutical Sciences
- Zhejiang University
- Hangzhou 310058
- China
| | - Yuanjiang Pan
- Department of Chemistry
- Zhejiang University
- Hangzhou 310027
- China
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19
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Eremin DB, Ananikov VP. Exceptional Behavior of Ni2O2 Species Revealed by ESI-MS and MS/MS Studies in Solution. Application of Superatomic Core To Facilitate New Chemical Transformations. Organometallics 2014. [DOI: 10.1021/om500637k] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Dmitry B. Eremin
- Zelinsky
Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Pr. 47, Moscow 119991, Russia
| | - Valentine P. Ananikov
- Zelinsky
Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Pr. 47, Moscow 119991, Russia
- Department
of Chemistry, Saint Petersburg State University, Stary Petergof, 198504, Russia
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20
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Vikse KL, Ahmadi Z, Scott McIndoe J. The application of electrospray ionization mass spectrometry to homogeneous catalysis. Coord Chem Rev 2014. [DOI: 10.1016/j.ccr.2014.06.012] [Citation(s) in RCA: 75] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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21
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Orlov NV, Chistyakov IV, Khemchyan LL, Ananikov VP, Beletskaya IP, Starikova ZA. Exclusive selectivity in the one-pot formation of C-C and C-Se bonds involving Ni-catalyzed alkyne hydroselenation: optimization of the synthetic procedure and a mechanistic study. J Org Chem 2014; 79:12111-21. [PMID: 25288369 DOI: 10.1021/jo501953f] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
A unique Ni-catalyzed transformation is reported for the one-pot highly selective synthesis of previously unknown monoseleno-substituted 1,3-dienes starting from easily available terminal alkynes and benzeneselenol. The combination of a readily available catalyst precursor, Ni(acac)2, and an appropriately tuned phosphine ligand, PPh2Cy, resulted in the exclusive assembly of the s-gauche diene skeleton via the selective formation of C-C and C-Se bonds. The unusual diene products were stable under regular experimental conditions, and the products maintained the s-gauche geometry both in the solid state and in solution, as confirmed by X-ray analysis and NMR spectroscopy. Thorough mechanistic studies using ESI-MS revealed the key Ni-containing species involved in the reaction.
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Affiliation(s)
- Nikolay V Orlov
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences , Leninsky Prospect 47, Moscow 119991, Russia
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22
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Rijs NJ, Yoshikai N, Nakamura E, O’Hair RAJ. Unraveling Organocuprate Complexity: Fundamental Insights into Intrinsic Group Transfer Selectivity in Alkylation Reactions. J Org Chem 2014; 79:1320-34. [DOI: 10.1021/jo4027325] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
| | - Naohiko Yoshikai
- Division
of Chemistry and Biological Chemistry, School of Physical and Mathematical
Sciences, Nanyang Technological University, Singapore 637371
| | - Eiichi Nakamura
- Department
of Chemistry, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan
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23
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Gas-Phase Ion Chemistry of Rare Earths and Actinides. ACTA ACUST UNITED AC 2014. [DOI: 10.1016/b978-0-444-63256-2.00263-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
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24
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Hývl J, Roithová J. Mass spectrometric studies of reductive elimination from Pd(IV) complexes. Org Lett 2013; 16:200-3. [PMID: 24313338 DOI: 10.1021/ol403190g] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
Reductive elimination of ethane from the palladium(IV) complex [PdMe3(bpy)I] (bpy = 2,2'-bipyridine) is studied by electrospray ionization mass spectrometry. Palladium(IV) complexes can be detected as binuclear clusters [Pd2Me6I(bpy)2](+) or as complexes [PdMe3(bpy)(L)](+) stabilized by an electron-donating ligand L. Fragmentation of all palladium(IV) complexes is dominated by elimination of ethane which corresponds to the reductive elimination coupling of the methyl groups. The associated energy demands for different complexes reveal that the mononuclear complexes with poorly electron-donating ligands provide the fastest reaction.
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Affiliation(s)
- Jakub Hývl
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic , Flemingovo náměstí 2, 16610 Prague 6, Czech Republic
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25
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Gong Y, Hu HS, Rao L, Li J, Gibson JK. Experimental and Theoretical Studies on the Fragmentation of Gas-Phase Uranyl–, Neptunyl–, and Plutonyl–Diglycolamide Complexes. J Phys Chem A 2013; 117:10544-50. [DOI: 10.1021/jp4076977] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Yu Gong
- Chemical
Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Han-Shi Hu
- Department of Chemistry & Laboratory of Organic Optoelectronics and Molecular Engineering of the Ministry of Education, Tsinghua University, Beijing 100084, China
| | - Linfeng Rao
- Chemical
Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Jun Li
- Department of Chemistry & Laboratory of Organic Optoelectronics and Molecular Engineering of the Ministry of Education, Tsinghua University, Beijing 100084, China
- William
R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - John K. Gibson
- Chemical
Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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26
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Guo L, Xu Y, Wang X, Liu W, Lu D. Investigation of the Mechanisms of Palladium-Catalyzed C–H Acetoxylation and Methoxylation by Electrospray Ionization Mass Spectrometry. Organometallics 2013. [DOI: 10.1021/om301195k] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Lijuan Guo
- Department of Chemistry
and Anhui Key Lab for Biomass Clean Energy, University of Science and Technology of China, Hefei,
230026, People’s Republic of China
| | - Yu Xu
- Department of Chemistry
and Anhui Key Lab for Biomass Clean Energy, University of Science and Technology of China, Hefei,
230026, People’s Republic of China
| | - Xiaojing Wang
- Department of Chemistry
and Anhui Key Lab for Biomass Clean Energy, University of Science and Technology of China, Hefei,
230026, People’s Republic of China
| | - Wenjing Liu
- Department of Chemistry
and Anhui Key Lab for Biomass Clean Energy, University of Science and Technology of China, Hefei,
230026, People’s Republic of China
| | - Dapeng Lu
- Department of Chemistry
and Anhui Key Lab for Biomass Clean Energy, University of Science and Technology of China, Hefei,
230026, People’s Republic of China
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27
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Kretschmer R, Schlangen M, Schwarz H. Thermal Activation of Ammonia by Transition-Metal Hydroxide Cations. Chempluschem 2013; 78:952-958. [DOI: 10.1002/cplu.201300138] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2013] [Indexed: 11/10/2022]
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28
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Zhu W, Wang H, Peng H, Liu G, Guo Y. Study of the Transient Reactive Pd(IV) Intermediate in the Pd(OAc)2-Catalyzed Oxidative Coupling Reaction System by Electrospray Ionization Tandem Mass Spectrometry. CHINESE J CHEM 2013. [DOI: 10.1002/cjoc.201201167] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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29
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Hyvl J, Agrawal D, Pohl R, Suri M, Glorius F, Schröder D. Electrospray Ionization Mass Spectrometry Reveals an Unexpected Coupling Product in the Copper-Promoted Synthesis of Pyrazoles. Organometallics 2013. [DOI: 10.1021/om3010417] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Jakub Hyvl
- Institute of Organic Chemistry
and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo Náměstí 2, 16610 Prague 6, Czech
Republic
| | - Divya Agrawal
- Institute of Organic Chemistry
and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo Náměstí 2, 16610 Prague 6, Czech
Republic
- Organic Chemistry and Biochemistry, Leibniz-Institut für Molekulare Pharmakologie (FMP), Robert-Roessle-Straße 10, 13125 Berlin, Germany
| | - Radek Pohl
- Institute of Organic Chemistry
and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo Náměstí 2, 16610 Prague 6, Czech
Republic
| | - Mamta Suri
- Organisch-Chemisches
Institut, International NRW Graduate School of Chemistry, Westfälische Wilhelms-Universität Münster, Corrensstraße 40, 48149 Münster, Germany
| | - Frank Glorius
- Organisch-Chemisches
Institut, International NRW Graduate School of Chemistry, Westfälische Wilhelms-Universität Münster, Corrensstraße 40, 48149 Münster, Germany
| | - Detlef Schröder
- Institute of Organic Chemistry
and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo Náměstí 2, 16610 Prague 6, Czech
Republic
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30
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Gong Y, Gibson JK. Formation and Characterization of the Uranyl–SO2 Complex, UO2(CH3SO2)(SO2)−. J Phys Chem A 2013; 117:783-7. [DOI: 10.1021/jp311034x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yu Gong
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United
States
| | - John K. Gibson
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United
States
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31
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Kretschmer R, Schlangen M, Schwarz H. C–N coupling in the gas-phase reactions of ammonia and [M(CH)]+ (M = Ni, Pd, Pt): a combined experimental/computational exercise. Dalton Trans 2013; 42:4153-62. [DOI: 10.1039/c3dt32596b] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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32
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Machado AHL, Milagre HMS, Eberlin LS, Sabino AA, Correia CRD, Eberlin MN. “Dba-free” palladium intermediates of the Heck–Matsuda reaction. Org Biomol Chem 2013; 11:3277-81. [DOI: 10.1039/c3ob40142a] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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33
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Efficient and eco-friendly synthesis of iodinated aromatic building blocks promoted by iodine and hydrogen peroxide in water: a mechanistic investigation by mass spectrometry. Tetrahedron Lett 2012. [DOI: 10.1016/j.tetlet.2012.07.102] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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34
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Zhu W, Yuan Y, Zhou P, Zeng L, Wang H, Tang L, Guo B, Chen B. The expanding role of electrospray ionization mass spectrometry for probing reactive intermediates in solution. Molecules 2012; 17:11507-37. [PMID: 23018925 PMCID: PMC6268401 DOI: 10.3390/molecules171011507] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2012] [Revised: 08/29/2012] [Accepted: 09/05/2012] [Indexed: 12/31/2022] Open
Abstract
Within the past decade, electrospray ionization mass spectrometry (ESI-MS) has rapidly occupied a prominent position for liquid-phase mechanistic studies due to its intrinsic advantages allowing for efficient "fishing" (rapid, sensitive, specific and simultaneous detection/identification) of multiple intermediates and products directly from a "real-world" solution. In this review we attempt to offer a comprehensive overview of the ESI-MS-based methodologies and strategies developed up to date to study reactive species in reaction solutions. A full description of general issues involved with probing reacting species from complex (bio)chemical reaction systems is briefly covered, including the potential sources of reactive intermediate (metabolite) generation, analytical aspects and challenges, basic rudiments of ESI-MS and the state-of-the-art technology. The main purpose of the present review is to highlight the utility of ESI-MS and its expanding role in probing reactive intermediates from various reactions in solution, with special focus on current progress in ESI-MS-based approaches for improving throughput, testing reality and real-time detection by using newly developed MS instruments and emerging ionization sources (such as ambient ESI techniques). In addition, the limitations of modern ESI-MS in detecting intermediates in organic reactions is also discussed.
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Affiliation(s)
- Weitao Zhu
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China), Hunan Normal University, 36 Lushan Road, Changsha 410081, China; (W.Z.); (P.Z.); (L.Z.); (H.W.); (L.T.); (B.C.)
| | - Yu Yuan
- School of Pharmaceutical Sciences, Central South University, 172 Tongzipo Road, Changsha 410013, China;
| | - Peng Zhou
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China), Hunan Normal University, 36 Lushan Road, Changsha 410081, China; (W.Z.); (P.Z.); (L.Z.); (H.W.); (L.T.); (B.C.)
| | - Le Zeng
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China), Hunan Normal University, 36 Lushan Road, Changsha 410081, China; (W.Z.); (P.Z.); (L.Z.); (H.W.); (L.T.); (B.C.)
| | - Hua Wang
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China), Hunan Normal University, 36 Lushan Road, Changsha 410081, China; (W.Z.); (P.Z.); (L.Z.); (H.W.); (L.T.); (B.C.)
| | - Ling Tang
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China), Hunan Normal University, 36 Lushan Road, Changsha 410081, China; (W.Z.); (P.Z.); (L.Z.); (H.W.); (L.T.); (B.C.)
| | - Bin Guo
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China), Hunan Normal University, 36 Lushan Road, Changsha 410081, China; (W.Z.); (P.Z.); (L.Z.); (H.W.); (L.T.); (B.C.)
| | - Bo Chen
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China), Hunan Normal University, 36 Lushan Road, Changsha 410081, China; (W.Z.); (P.Z.); (L.Z.); (H.W.); (L.T.); (B.C.)
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35
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Schröder D. Applications of electrospray ionization mass spectrometry in mechanistic studies and catalysis research. Acc Chem Res 2012; 45:1521-32. [PMID: 22702223 DOI: 10.1021/ar3000426] [Citation(s) in RCA: 150] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Mechanistic studies form the basis for a better understanding of chemical processes, helping researchers develop more sustainable reactions by increasing the yields of the desired products, reducing waste production, and lowering the consumption of resources and energy overall. Conventional methods for the investigation of reaction mechanisms in solution include kinetic studies, isotope labeling, trapping of reactive intermediates, and advanced spectroscopic techniques. Within the past decade, electrospray ionization mass spectrometry (ESI-MS) has provided an additional tool for mechanistic studies because researchers can directly probe liquid samples by mass spectrometry under gentle conditions. Specifically, ESI-MS allows researchers to identify the molecular entities present in solution over the course of a chemical transformation. ESI-MS is particularly useful for investigations of organic reactions or metal catalysis that involve ionic intermediates. Accordingly, researchers are increasingly using ESI-MS in mechanistic studies and catalyst development. However, a further understanding of the ESI process and how it can facilitate mechanistic studies has not accompanied this increased use of the technique. Therefore, at least in part the ESI-MS method not only has offered great promise for the elucidation of reaction mechanisms but also became a black box with the occasional risk of misinterpretation. In this Account, we summarize applications of ESI-MS for synthetic and mechanistic research. Recently researchers have established direct linkages between gas-phase data obtained via ESI-MS and processes occurring in solution, and these results reveal qualitative and quantitative correlations between ESI-MS measurements and solution properties. In this context, time dependences, concentration series, and counterion effects can serve as criteria that allow researchers assess if the gas-phase measurements correlate with the situation in the solution. Furthermore, we report developments that bridge the gap between gas-phase and solution-phase studies. We also describe predictions derived from ESI-MS that have been verified with solution-phase chemistry experiments.
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Affiliation(s)
- Detlef Schröder
- Institute of Organic Chemistry and Biochemistry, Flemingovo nám. 2, 16610 Prague 6, Czech Republic
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36
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Effects of Ligands, Cluster Size, and Charge State in Gas-Phase Catalysis: A Happy Marriage of Experimental and Computational Studies. Catal Letters 2012. [DOI: 10.1007/s10562-012-0892-3] [Citation(s) in RCA: 98] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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37
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Parera M, Dachs A, Solà M, Pla-Quintana A, Roglans A. Direct Detection of Key Intermediates in Rhodium(I)-Catalyzed [2+2+2] Cycloadditions of Alkynes by ESI-MS. Chemistry 2012; 18:13097-107. [DOI: 10.1002/chem.201200880] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2012] [Revised: 07/03/2012] [Indexed: 11/10/2022]
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38
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Madeira PJA, Morais TS, Silva TJL, Florindo P, Garcia MH. Gas-phase behaviour of Ru(II) cyclopentadienyl-derived complexes with N-coordinated ligands by electrospray ionization mass spectrometry: fragmentation pathways and energetics. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2012; 26:1675-1686. [PMID: 22730088 DOI: 10.1002/rcm.6276] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
RATIONALE The gas-phase behaviour of six Ru(II) cyclopentadienyl-derived complexes with N-coordinated ligands, compounds with antitumor activities against several cancer lines, was studied. This was performed with the intent of establishing fragmentation pathways and to determine the Ru-L(N) and Ru-L(P) ligand bond dissociation energies. Such knowledge can be an important tool for the postulation of the mechanisms of action of these anticancer drugs. METHODS Two types of instruments equipped with electrospray ionisation were used (ion trap and a Fourier transform ion cyclotron resonance (FTICR) mass spectrometer). The dissociation energies were determined using energy-variable collision-induced dissociation measurements in the ion trap. The FTICR instrument was used to perform MS(n) experiments on one of the compounds and to obtain accurate mass measurements. Theoretical calculations were performed at the density functional theory (DFT) level using two different functionals (B3LYP and M06L) to estimate the dissociation energies of the complexes under study. RESULTS The influence of the L(N) on the bond dissociation energy (D) of RuCp compounds with different nitrogen ligands was studied. The lability order of L(N) was: imidazole<1-butylimidazole<5-phenyl-1H-tetrazole<1-benzylimidazole. Both the functionals used gave the following ligand lability order: imidazole<1-benzylimidazole<5-phenyl-1H-tetrazole<1-butylimidazole. It is clear that there is an inversion between 1-benzylimidazole and 1-butylimidazole for the experimental and theoretical lability orders. The M06L functional afforded values of D closer to the experimental values. The type of phosphane (L(P) ) influenced the dissociation energies, with values of D being higher for Ru-L(N) with 1-butylimidazole when the phosphane was 1,2-bis(diphenylphosphino)ethane. The Ru-L(P) bond dissociation energy for triphenylphosphane was independent of the type of complex. CONCLUSIONS The D values of Ru-L(N) and Ru-L(P) were determined for all six compounds and compared with the values calculated by the DFT method. For the imidazole-derived ligands the energy trend was rationalized in terms of the increasing extension of the σ-donation/π-backdonation effect. The bond dissociation energy of Ru-PPh(3) was independent of the fragmentations.
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Affiliation(s)
- Paulo J Amorim Madeira
- Centro de Química e Bioquímica, Departamento de Química e Bioquímica, Faculdade de Ciências da Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal.
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Mas-Ballesté R, McDonald AR, Reed D, Usharani D, Schyman P, Milko P, Shaik S, Que L. Intramolecular gas-phase reactions of synthetic nonheme oxoiron(IV) ions: proximity and spin-state reactivity rules. Chemistry 2012; 18:11747-60. [PMID: 22837063 DOI: 10.1002/chem.201200105] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2012] [Revised: 03/16/2012] [Indexed: 11/11/2022]
Abstract
The intramolecular gas-phase reactivity of four oxoiron(IV) complexes supported by tetradentate N(4) ligands (L) has been studied by means of tandem mass spectrometry measurements in which the gas-phase ions [Fe(IV)(O)(L)(OTf)](+) (OTf = trifluoromethanesulfonate) and [Fe(IV) (O)(L)](2+) were isolated and then allowed to fragment by collision-induced decay (CID). CID fragmentation of cations derived from oxoiron(IV) complexes of 1,4,8,11-tetramethyl-1,4,8,11-tetraazacyclotetradecane (tmc) and N,N'-bis(2-pyridylmethyl)-1,5-diazacyclooctane (L(8)Py(2)) afforded the same predominant products irrespective of whether they were hexacoordinate or pentacoordinate. These products resulted from the loss of water by dehydrogenation of ethylene or propylene linkers on the tetradentate ligand. In contrast, CID fragmentation of ions derived from oxoiron(IV) complexes of linear tetradentate ligands N,N'-bis(2-pyridylmethyl)-1,2-diaminoethane (bpmen) and N,N'-bis(2-pyridylmethyl)-1,3-diaminopropane (bpmpn) showed predominant oxidative N-dealkylation for the hexacoordinate [Fe(IV)(O)(L)(OTf)](+) cations and predominant dehydrogenation of the diaminoethane/propane backbone for the pentacoordinate [Fe(IV)(O)(L)](2+) cations. DFT calculations on [Fe(IV)(O)(bpmen)] ions showed that the experimentally observed preference for oxidative N-dealkylation versus dehydrogenation of the diaminoethane linker for the hexa- and pentacoordinate ions, respectively, is dictated by the proximity of the target C-H bond to the oxoiron(IV) moiety and the reactive spin state. Therefore, there must be a difference in ligand topology between the two ions. More importantly, despite the constraints on the geometries of the TS that prohibit the usual upright σ trajectory and prevent optimal σ(CH)-σ*(z2) overlap, all the reactions still proceed preferentially on the quintet (S = 2) state surface, which increases the number of exchange interactions in the d block of iron and leads thereby to exchange enhanced reactivity (EER). As such, EER is responsible for the dominance of the S = 2 reactions for both hexa- and pentacoordinate complexes.
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Affiliation(s)
- Rubén Mas-Ballesté
- Department of Chemistry and Center for Metals in Biocatalysis, University of Minnesota, Minneapolis, MN 55455, USA
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Ananikov VP, Ivanova JV, Khemchyan LL, Beletskaya IP. Unusual Control of Reaction Selectivity through a Subtle Change in the Ligand: Proof of Concept and Application in Pd-Catalyzed C-P Bond Formation. European J Org Chem 2012. [DOI: 10.1002/ejoc.201200342] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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41
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He X, Zhang S, Guo Y, Wang H, Lin G. Mechanistic Investigations of a Palladium-Diene Catalyzed Suzuki–Miyaura Cross-Coupling Reaction. Organometallics 2012. [DOI: 10.1021/om300115x] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Xiaoshuang He
- Shanghai Institute of Organic Chemistry, Chinese Academy
of Sciences, 345 Lingling Road, Shanghai 200032,
People's Republic of China
| | - Shusheng Zhang
- Shanghai Institute of Organic Chemistry, Chinese Academy
of Sciences, 345 Lingling Road, Shanghai 200032,
People's Republic of China
| | - Yinlong Guo
- Shanghai Institute of Organic Chemistry, Chinese Academy
of Sciences, 345 Lingling Road, Shanghai 200032,
People's Republic of China
| | - Haoyang Wang
- Shanghai Institute of Organic Chemistry, Chinese Academy
of Sciences, 345 Lingling Road, Shanghai 200032,
People's Republic of China
| | - Guoqiang Lin
- Shanghai Institute of Organic Chemistry, Chinese Academy
of Sciences, 345 Lingling Road, Shanghai 200032,
People's Republic of China
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Kretschmer R, Schlangen M, Kaupp M, Schwarz H. Neutral Metal Atoms Acting as a Leaving Group in Gas-Phase SN2 Reactions: M(CH3)+ + NH3 → CH3NH3+ + M (M = Zn, Cd, Hg). Organometallics 2012. [DOI: 10.1021/om300116c] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Robert Kretschmer
- Institut für Chemie, Technische Universität Berlin, Straße des 17. Juni
135, 10623 Berlin
| | - Maria Schlangen
- Institut für Chemie, Technische Universität Berlin, Straße des 17. Juni
135, 10623 Berlin
| | - Martin Kaupp
- Institut für Chemie, Technische Universität Berlin, Straße des 17. Juni
135, 10623 Berlin
| | - Helmut Schwarz
- Institut für Chemie, Technische Universität Berlin, Straße des 17. Juni
135, 10623 Berlin
- Chemistry Department, Faculty
of Science, King Abdulaziz University,
Jeddah 21589, Saudi Arabia
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Kretschmer R, Schlangen M, Schwarz H. Thermal Ammonia Activation by Cationic Transition-Metal Hydrides of the First Row - Small but Mighty. Chem Asian J 2012; 7:1214-20. [DOI: 10.1002/asia.201101045] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2011] [Indexed: 11/09/2022]
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Rijs NJ, Yoshikai N, Nakamura E, O’Hair RAJ. Gas-Phase Reactivity of Group 11 Dimethylmetallates with Allyl Iodide. J Am Chem Soc 2012; 134:2569-80. [DOI: 10.1021/ja2069032] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Nicole J. Rijs
- ARC Centre of Excellence for Free Radical Chemistry and Biotechnology
| | - Naohiko Yoshikai
- Division of Chemistry and Biological
Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, Singapore 637371
| | - Eiichi Nakamura
- Department of Chemistry, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033,
Japan
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Mehrotra R, Shukla SN, Gaur P. Spectroscopic characterization of Schiff base coordinating monomolecular trinuclear complexes prepared through tailored synthesis. J COORD CHEM 2012. [DOI: 10.1080/00958972.2011.645814] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
Affiliation(s)
- Ripul Mehrotra
- a Department of Engineering Chemistry , ITM University , Gwalior , MP , India
| | - Satyendra N. Shukla
- b Coordination Chemistry Research Lab, Department of Chemistry , Government Model Science College , Jabalpur , MP 482001 , India
| | - Pratiksha Gaur
- b Coordination Chemistry Research Lab, Department of Chemistry , Government Model Science College , Jabalpur , MP 482001 , India
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Putau A, Brand H, Koszinowski K. Tetraalkylcuprates(III): formation, association, and intrinsic reactivity. J Am Chem Soc 2011; 134:613-22. [PMID: 22129347 DOI: 10.1021/ja209433j] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Tetraalkylcuprates are prototypical examples of organocopper(III) species, which remained elusive until their recent detection by NMR spectroscopy. In agreement with the NMR studies, the present electrospray ionization mass spectrometric experiments, as well as supporting electrical conductivity measurements, indicate that LiCuMe(2)·LiCN reacts with a series of alkyl halides RX. The resulting Li(+)Me(2)CuR(CN)(-) intermediates then afford the observable Me(3)CuR(-) tetraalkylcuprate anions upon Me/CN exchanges with added MeLi. In contrast, the reactions of LiCuMe(2)·LiCN with neopentyl iodide and various aryl halides give rise to halogen-copper exchanges. Concentration- and solvent-dependent studies suggest that lithium tetraalkylcuprates are not fully dissociated in ethereal solvents, but partly form Li(+)Me(3)CuR(-) contact ion pairs and presumably also triple ions LiMe(6)Cu(2)R(2)(-). According to theoretical calculations, these triple ions consist of two square-planar Me(3)CuR(-) subunits binding to a central Li(+) ion. Upon fragmentation in the gas phase, the mass-selected Me(3)CuR(-) anions undergo reductive elimination, yielding both the cross-coupling products MeR and the homocoupling product Me(2). The branching between these two fragmentation channels markedly depends on the nature of the alkyl substituent R. The triple ions LiMe(6)Cu(2)R(2)(-) (as well as their mixed analogues LiMe(6)Cu(2)R(R')(-)) also afford both cross-coupling and homocoupling products upon fragmentation, but strongly favor the former. On the basis of theoretical calculations, we rationalize this prevalence of cross-coupling by the preferential interaction of the central Li(+) ion of the triple ions with two Me groups of each Me(3)CuR(-) subunit, which thereby effectively blocks the homocoupling channel. Our results thus show how a Li(+) counterion can alter the reactivity of an organocopper species at the molecular level.
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Affiliation(s)
- Aliaksei Putau
- Department Chemie, Ludwig-Maximilians-Universität München, Butenandtstrasse 5-13, 81377 München, Germany
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Kretschmer R, Schlangen M, Schwarz H. Mechanistic Aspects and Elementary Steps of NH Bond Activation of Ammonia and CN Coupling Induced by Gas-Phase Ions: A Combined Experimental/Computational Exercise. Chemistry 2011; 18:40-9. [DOI: 10.1002/chem.201102494] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2011] [Indexed: 01/07/2023]
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Zhao ZX, Wang HY, Guo YL. Studies on CH3CN-assisted decomposition of 1st Grubbs catalyst by electrospray ionization tandem mass spectrometry. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2011; 25:3401-3410. [PMID: 22002693 DOI: 10.1002/rcm.5240] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
The CH(3)CN-assisted decomposition reaction of the 1(st) Grubbs catalyst (1) was studied using electrospray ionization tandem mass spectrometry (ESI-MS/MS). We detected a series of Ru-intermediates and decomposition products by off-line and on-line ESI-MS(/MS) monitoring of the decomposition process. In particular, an on-line microreactor method was applied with ESI-MS/MS to profile the change and relationship of various Ru-intermediates by controlling the reaction within the first 30 s of its time scale. The main fast decomposition mechanism of Ru-catalyst 1 in the presence of CH(3)CN was similar to that proposed by Grubbs, and this was confirmed by detecting the (PhCH(2)PCy(3))(+) ion at m/z 371 as the major decomposition products with ESI-MS. We also studied the time evolution of the transient reactive Ru-intermediate ions step by step with ESI-MS/MS and detected the C-H bond activation products of toluene--dehydrogenated PCy(3), such as P(Cy)(2)(C(6)H(9)), P(Cy)(2)Ph--by analyzing the decomposition reaction solution by gas chromatography (GC)/MS. The mechanism of another minor decomposition pathway involving the phosphine activation of catalyst 1 was proposed on the basis of the ESI-MS(/MS) interception and characterization of the transient reactive Ru-species in the decomposition reaction solution. Finally the coordination effect of the CH(3)CN in assisting the decomposition and stabilizing the transient Ru-complexes is discussed.
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Affiliation(s)
- Zhi-Xiong Zhao
- Shanghai Mass Spectrometry Center, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai, 200032, PR China
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Putau A, Koszinowski K. Association and Dissociation of Lithium Cyanocuprates in Ethereal Solvents. Organometallics 2011. [DOI: 10.1021/om200625z] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Aliaksei Putau
- Department Chemie, Ludwig-Maximilians-Universität München, Butenandtstr. 5-13, 81377 München, Germany
| | - Konrad Koszinowski
- Department Chemie, Ludwig-Maximilians-Universität München, Butenandtstr. 5-13, 81377 München, Germany
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