Topological Analysis of the Electron Density in the N-Heterocyclic Carbene Triruthenium Cluster [Ru3(μ-H)2(μ3-MeImCH)(CO)9] (Me2Im = 1,3-dimethylimidazol-2-ylidene)

Synthetic, Electrochemical, DFT, and Synchrotron X-ray Charge-Density Studies on Oxo-centered Triruthenium Clusters Supported by Electron-Withdrawing Carboxylates

We herein report the synthesis, characterizations, and synchrotron X-ray charge-density studies of oxo-centered triruthenium(II,III,III) clusters [Ru3O(CHCl2COO)6(py)3] (1) and [Ru3O(CHCl2COO)6(CO)(py)2] (2) (py = pyridine). Dichloroacetate was chosen for its large scattering factor of the Cl atom, and its electron-withdrawing nature results in significant stabilization of the targeted lower-valent Ru3II,III,III state in the cluster framework. Multipole analysis revealed that the difference in electron populations between two crystallographically independent Ru centers is small for 1 (Δ = 0.30 e) but large for 2 (Δ = 1.46 e). Remarkable differences between 1 and 2 are also found in their static deformation density maps; substantial local charge depletion was found around the central μ3O atom for 1, which is less pronounced for 2. According to the topological characterization of Ru-μ3O bonds associated with the bond critical point, bcp, the electron density, ρbcp, is in the range of 0.79-0.89 e Å-3, and the total energy density, Hbcp, is in the range of -0.21 to -0.05 hartree Å-3. These findings represent the first charge-density distribution analysis of mixed-valence multinuclear Ru complexes including comparison between 3d and 4d transition-metal systems.

QTAIM analysis of the bonding in anionic group 6 carbonyl selenide clusters: [Se2M3(CO)10]2- (M=Cr, Mo, W)

CONTEXT

This research aims to offer a deeper understanding of the bonding interactions between M-Se and M-CO and how these interactions change across the group 6 transition metal series: [Se2M3(CO)10]2- (M = Cr, Mo, W). It also seeks to explore the impact of carbonyl groups on M-M interactions within the clusters. Seven criteria, which are based on QTAIM properties, have been considered and compared with the corresponding criteria in other transition metal clusters. The results confirm that no such bond critical points or bond baths occur between transition metals, which instead have 5c-7e bonding interactions delocalized over their five-membered M3(μ-Se)2 ring, as evidenced by the non-negligible nonbonding delocalization indices. The topological properties of three bond clusters, Cr-Se, Mo-Se, and W-Se, resemble those of "intermediate closed shell characters," which combine covalent and electrostatic properties. Source function calculations indicated that the bonded Se atom contributed the most to each Cr-Se and Mo-Se bcp. The OCO atoms and nonbonded Se atoms also contributed to some extent. However, metal atoms act as sinks rather than as sources of electron density. In contrast, the majority of the metal atoms, both bonded and nonbonded, contribute to Cr-W bcps. Analysis of the delocalization indices δ(M…O) in the three clusters indicates that CO significantly contributes to Cr π-back donation in cluster 1. In contrast, no π-back donation occurs from CO to Mo or W in clusters 2 or 3, respectively.

METHODS

The B3P86 hybrid functional was used for computations in the Gaussian 09 software. The LanL2DZ basis set was employed for Cr, Mo, and W, while the 6-31G (d, p) basis set was used for C, O, and Se atoms. We performed QTAIM analysis using the AIM2000 and Multiwfn packages, incorporating B3P86/WTBS for Cr, Mo, and W atoms. The 6-311++G(3df,3pd) basis set was used for C, O, and Se atoms. Additionally, we utilized the ELF and SF.

Anions featuring an aluminium-silicon core with alumanyl silanide and aluminata-silene characteristics

Molecular species containing multiple bonds to aluminium have long been challenging synthetic targets. Despite recent landmark discoveries in this area, heterodinuclear Al-E multiple bonds (where E is a group-14 element) have remained rare and limited to highly polarized π-interactions (Al=E ↔ +Al-E-). Here we report the isolation of three alumanyl silanide anions that feature an Al-Si core stabilized by bulky substituents and a Si-Na interaction. Single-crystal X-ray diffraction studies, spectroscopic analysis and density functional theory calculations show that the Al-Si interaction possesses partial double bond character. Preliminary reactivity studies support this description of the compounds through two resonance structures: one that displays a predominant nucleophilic character of the sodium-coordinated silicon centre in the Al-Si core, as shown by silanide-like reactivity towards halosilane electrophiles and the CH-insertion of phenylacetylene. Moreover, we report an alumanyl silanide with a sequestered sodium cation. Cleavage of the Si-Na bond by [2.2.2]cryptand increases the double bond character of the Al-Si core to produce an anion with high aluminata-silene (-Al=Si) character.

Synthesis of (μ2,η3-allyl-η5-oxapentadienyl)diiron pentacarbonyl complexes, an unusual reaction product from η4-(vinylketene)Fe(CO)3 complexes: structure and electron density distribution analysis

The synthesis of a series of ferrocenylvinylketenes as stable η⁴-[Fe(CO)₃] complexes (3a-f) was successfully accomplished through the reaction of η²-[Fe(CO)₄] complexes under mild carbonylation conditions. The reactivity of 3a-f under thermal conditions afforded the unexpected formation of a novel family of (μ²,η³-allyl-η⁵-oxapentadienyl)diiron pentacarbonyl complexes 5a-f proposed to be formed by a sequence metathesis-haptotropic rearrangement between the starting η⁴-vinylketene iron(0) complex 3 and a η⁴-vinylcarbene iron(0) complex trapped in situ after a reversible carbonylation process favored by the thermal conditions. An electron density distribution analysis (EDD) of 5e using high-resolution X-ray diffraction data in combination with the DFT framework was performed to understand the electronic communication between the two iron fragments.

Synthesis, Crystallographic Structure, Theoretical Analysis, Molecular Docking Studies, and Biological Activity Evaluation of Binuclear Ru(II)-1-Naphthylhydrazine Complex

Ruthenium(II)-arene complexes have gained significant research interest due to their possible application in cancer therapy. In this contribution two new complexes are described, namely [{RuCl(η⁶-p-cymene)}₂(μ-Cl)(μ-1-N,N'-naphthyl)]X (X = Cl, 1; PF₆, 2), which were fully characterized by IR, NMR, and elemental microanalysis. Furthermore, the structure of 2 in the solid state was determined by a single crystal X-ray crystallographic study, confirming the composition of the crystals as 2·2MeOH. The Hirshfeld surface analysis was employed for the investigation of interactions that govern the crystal structure of 2·2MeOH. The structural data for 2 out of 2·2MeOH was used for the theoretical analysis of the cationic part [{RuCl(η⁶-p-cymene)}₂(μ-Cl)(μ-1-N,N'-naphthyl)]⁺ (2a) which is common to both 1 and 2. The density functional theory, at B3LYP/6-31+G(d,p) basis set for H, C, N, and Cl atoms and LanL2DZ for Ru ions, was used for the optimization of the 2a structure. The natural bond orbital and quantum theory of atoms in molecules analyses were employed to quantify the intramolecular interactions. The reproduction of experimental IR and NMR spectra proved the applicability of the chosen level of theory. The binding of 1 to bovine serum albumin was examined by spectrofluorimetry and molecular docking, with complementary results obtained. Compound 1 acted as a radical scavenger towards DPPH^• and HO^• radicals, along with high activity towards cancer prostate and colon cell lines.

Stannylenes based on pyrrole-phosphane and dipyrromethane-diphosphane scaffolds: syntheses and behavior as precursors to PSnP pincer palladium(II), palladium(0) and gold(I) complexes

2-Ditertbutylphosphanylmethylpyrrole (H₂pyrmP^tBu₂) and 2,2'-bis(diisopropylphosphanylmethyl)-5,5'-dimethyldipyrromethane ((HpyrmPⁱPr₂)₂CMe₂) have been used to synthesize new P-donor-stabilized stannylenes in which the Sn atom is attached to one, SnCl(HpyrmP^tBu₂) (1) and Sn{N(SiMe₃)₂}(HpyrmP^tBu₂) (2), or two pyrrolyl-phosphane scaffolds, Sn(HpyrmP^tBu₂)₂ (3), or to a dipyrromethane-diphosphane scaffold, Sn(pyrmPⁱPr₂)₂CMe₂ (4). It has been found that stannylenes 3 and 4 are excellent precursors to transition metal complexes containing PSnP pincer-type ligands. Their reactions with chlorido transition metal complexes have afforded [PdCl{κ³P,Sn,P-SnCl(HpyrmP^tBu₂)₂}] (6), [PdCl{κ³P,Sn,P-SnCl(pyrmPⁱPr₂)₂CMe₂}] (7) and [Au{κ³P,Sn,P-SnCl(HpyrmP^tBu₂)₂}] (8), which contain a PSnP pincer-type chloridostannyl ligand. While complexes 6 and 7 are square-planar palladium(II) complexes, compound 8 is an uncommon gold(I) complex having a T-shaped coordination geometry with a very long Sn-Au bond (3.120 Å). The T-shaped palladium(0) complex [Pd{κ³P,Sn,P-Sn(pyrmPⁱPr₂)₂CMe₂}] (9), which contains an unprecedented PSnP pincer-type stannylene that behaves as a Z-type (σ-acceptor) ligand, has been prepared from 4 and [Pd(η³-C₃H₅)(η⁵-C₅H₅)].

Metal-CO Bonding in Mononuclear Transition Metal Carbonyl Complexes

DFT calculations have been carried out for coordinatively saturated neutral and charged carbonyl complexes [M(CO) _n ] ^q where M is a metal atom of groups 2-10. The model compounds M(CO)₂ (M = Ca, Sr, Ba) and the experimentally observed [Ba(CO)]⁺ were also studied. The bonding situation has been analyzed with a variety of charge and energy partitioning approaches. It is shown that the Dewar-Chatt-Duncanson model in terms of M ← CO σ-donation and M → CO π-backdonation is a valid approach to explain the M-CO bonds and the trend of the CO stretching frequencies. The carbonyl ligands of the neutral complexes carry a negative charge, and the polarity of the M-CO bonds increases for the less electronegative metals, which is particularly strong for the group 4 and group 2 atoms. The NBO method delivers an unrealistic charge distribution in the carbonyl complexes, while the AIM approach gives physically reasonable partial charges that are consistent with the EDA-NOCV calculations and with the trend of the C-O stretching frequencies. The AdNDP method provides delocalized MOs which are very useful models for the carbonyl complexes. Deep insight into the nature of the metal-CO bonds and quantitative information about the strength of the [M] ← (CO)₈ σ-donation and [M(d)] → (CO)₈ π-backdonation visualized by the deformation densities are provided by the EDA-NOCV method. The large polarity of the M-CO π orbitals toward the CO end in the alkaline earth octacarbonyls M(CO)₈ (M = Ca, Sr, Ba) leads to small values for the delocalization indices δ(M-C) and δ(M···O) and significant overlap between adjacent CO groups, but the origin of the charge migration and the associated red-shift of the C-O stretching frequencies is the [M(d)] → (CO)₈ π-backdonation. The heavier alkaline earth metals calcium, strontium and barium use their s/d valence orbitals for covalent bonding. They are therefore to be assigned to the transition metals.

Origin of the Ir-Si bond shortening in Ir-NSiN complexes

The Ir-Si bond distances reported for Ir-(fac-κ3-NSiNOPy) and Ir-(fac-κ3-NSiN4MeOPy) species (NSiNOPy = bis(pyridine-2-yloxy)methylsilyl and NSiN4MeOPy = bis(4-methyl-pyridine-2-yloxy)methylsily) are in the range of 2.220-2.235 Å. These values are in the lowest limit of the Ir-Si bond distances found in the Cambridge Structural Database (CSD). To understand the origin of such remarkable shortening, a computational study of the bonding situation of representative examples of Ir-(fac-κ3-NSiN) species has been carried out. It is found that the Ir-Si bond can be described as an electron-sharing (i.e. covalent) bond. Despite that, this bond is highly polarized and as a result, the contribution of the electrostatic attractions to the bonding is rather significant. Indeed, there exists a linear relationship (R2 = 0.97) between the Ir-Si bond distance and the extent of the computed electrostatic interactions, which indicates that the ionic contribution to the bonding is mainly responsible for the observed Ir-Si bond shortening.

Silylated silicon-carbonyl complexes as mimics of ubiquitous transition-metal carbonyls

Transition-metal-carbonyl complexes are common organometallic reagents that feature metal-CO bonds. These complexes have proven to be powerful catalysts for various applications. By contrast, silicon-carbonyl complexes, organosilicon reagents poised to be eco-friendly alternatives for transition-metal carbonyls, have remained largely elusive. They have mostly been explored theoretically and/or through low-temperature matrix isolation studies, but their instability had typically precluded isolation under ambient conditions. Here we present the synthesis, isolation and full characterization of stable silyl-substituted silicon-carbonyl complexes, along with bonding analysis. Initial reactivity investigations showed examples of CO liberation, which could be induced either thermally or photochemically, as well as substitution and functionalization of the CO moiety. Importantly, the complexes exhibit strong Si-CO bonding, with CO→Si σ-donation and Si→CO π-backbonding, which is reminiscent of transition-metal carbonyls. This similarity between the abundant semi-metal silicon and rare transition metals may provide new opportunities for the development of silicon-based catalysis.

The X-ray constrained wavefunction of the [Mn(CO)4{(C6H5)2P-S-C(Br2)-P(C6H5)2}]Br complex: a theoretical and experimental study of dihalogen bonds and other noncovalent interactions

The synthesis and X-ray structure determination of the [Mn(CO)₄{(C₆H₅)₂P-S-C(Br₂)-P(C₆H₅)₂}]Br complex (1) are described. The C-Br...Br dihalogen bond present in 1 has been characterized by means of topological studies of the electron density. Both the quantum theory of atoms in molecules and the electron localization function approaches have been applied to several theoretically calculated wavefunctions as well as to an X-ray constrained wavefunction. In addition, a number of theoretical techniques, such as the source function, the reduced density gradient method and the interacting quantum atoms approach, among others, have been used to analyse the dihalogen bond as well as several intramolecular interactions of the type C-H...Br-C which have also been detected in 1. The results show clearly that while bonding in the latter interactions are dominated by electrostatic components, the former has a high degree of covalency.

A dipyrromethane-based diphosphane–germylene as precursor to tetrahedral copper(i) and T-shaped silver(i) and gold(i) PGeP pincer complexes

A dipyrromethane-based PGeP germylene has allowed the synthesis of unusual tetrahedral copper(i) and T-shaped silver(i) and gold(i) germyl complexes.

Octahedral manganese(i) and ruthenium(ii) complexes containing 2-(methylamido)pyridine–borane as a tripod κ3N,H,H-ligand

The borane adduct of the 2-(methylamido)pyridine anion has been incorporated into octahedral metal (Mn, Ru) complexes and their bonding has been studied by theoretical methods (DFT, QTAIM).

An Entry to Stable Mixed Phosphine-Osmium-NHC Polyhydrides

An entry to mixed phosphine-osmium-NHC polyhydride complexes is described, starting from the five-coordinate hydrido-alkylidyne compounds [OsHCl(≡CPh)(IPr)(PR3)]OTf (IPr = 1,3-bis(2,6-disopropylphenyl)imidazolylidene; OTf = CF3SO3; PR3 = P(i)Pr3 (1), PPh3 (2)). The experimental procedure involves the borylation of the Os-C triple bond of 1 and 2 with NaBH4 and the subsequent alcoholysis of the borylation products OsH2Cl(η(2)-H-BCH2Ph)(IPr)(PR3) (PR3 = P(i)Pr3 (3), PPh3 (4)) or OsH2(η(2):η(2):H2BCH2Ph)(IPr)(P(i)Pr3) (5). Stirring of 3 in 2-propanol affords the five coordinate chloride-trihydride OsH3Cl(IPr)(P(i)Pr3)2 (6), which reacts with NaBH4 to give OsH3(κ(2)-H2BH2)(IPr)(P(i)Pr3) (7). This trihydride-tetrahydrideborate derivative and its PPh3 counterpart OsH3(κ(2)-H2BH2)(IPr)(PPh3) (8) can be also obtained in a one-pot procedure, starting from 1 and 2 and using methanol at -60 °C instead of 2-propanol as alcoholysis agent. The bonding situation in 7 and 8, analyzed by DFT calculations using AIM and NBO methods, resembles that found in B2H6 and contrasts with the bonding situation in the bis-σ-borane derivative 5. Stirring of 7 and 8 in 2-propanol leads to the corresponding d(2)-hexahydride derivatives OsH6(IPr)(PR3) (PR3 = P(i)Pr3 (9), PPh3 (10)), which reduce the C≡N triple bond of benzonitrile and promote the subsequent chelate-assisted ortho-CH bond activation of the resulting phenylmethanimine, to form the trihydride compounds OsH3{κ(2)-N,C-(NH═CH-C6H4)}(IPr)(PR3)2 (PR3 = P(i)Pr3 (11), PPh3 (12)), containing a stabilized orthometalated aldimine.

The nature of the bonding in symmetrical pincer palladacycles

The accuracy of DFT-optimised geometries of the symmetrical pincer palladacycles PdNCN and PdSCS, [ClPd{2,6-(Me2NCH2)2C6H3}] and [ClPd{2,6-(MeSCH2)2C6H3}] respectively, has been evaluated by investigating the performance of eight commonly used density functionals with four combinations of basis set, in reproducing their X-ray crystal structures. It was found that whilst the ωB97XD functional performed best over all, the PBE and TPSS functionals performed best when considering the palladium coordination geometry. The role of the donor atom in the stability and reactivity of the symmetric palladacycles, PdYCY, Y = N, S, or P, has been determined using Bader's Atoms in Molecules method to elucidate the nature of the bonding, and using a model formation reaction, which involves the C-H activation of the pincer ligand YCY by PdCl2. The calculations reveal distinct differences in the bond strength and nature of the interaction of Pd with the donor atoms Y, which support differences in the thermodynamic stability of the palladacycles.

Bonding between strongly repulsive metal atoms: an oxymoron made real in a confined space of endohedral metallofullerenes

Endohedral metallofullerenes (EMFs) are able to encapsulate up to four metal atoms. In EMFs, metal atoms are positively charged because of the electron transfer from the endohedral metal atoms to the carbon cage. It results in the strong Coulomb repulsion between the positively charged ions trapped in the confined inner space of the fullerene. At the same time, in many EMFs, such as Lu(2)@C(76), Y(2)@C(79)N, M(2)@C(82) (M = Sc, Y, Lu, etc.), Y(3)@C(80), or Sc(4)O(2)@C(80), metals do not adopt their highest oxidation states, thus yielding a possibility of the covalent metal-metal bonding. In some other EMFs (e.g., La(2)@C(80)), metal-metal bonding evolves as the result of the electrochemical or chemical reduction, which leads to the population of the metal-based LUMO with pronounced metal-metal bonding character. This article highlights different aspects of the metal-metal bonding in EMFs. It is concluded that the valence state of the metal atoms in dimetallofullerenes is not dependent on their third ionization potential, but is determined by their ns(2)(n- 1)d(1)→ns(1)(n- 1)d(2) excitation energies. Peculiarities of the metal-metal bonding in EMFs are described in terms of molecular orbital analysis as well as topological approaches such as Quantum Theory of Atoms in Molecules and Electron Localization Function. Interplay of Coulomb repulsion and covalent bonding is analyzed in the framework of the Interacting Quantum Atom approach.

Neutral noble gas compounds exhibiting a Xe-Xe bond: structure, stability and bonding situation

The structure and stability towards decomposition of eight novel noble gas compounds having a Xe-Xe bond, which have not been experimentally observed so far, have been studied computationally. In addition, the nature of the Xe-Xe interaction has been analysed by a combination of the most popular methods to study the bonding situation of molecules, i.e. Natural Bond Orbital, Atom in Molecules and Energy Decomposition Analysis methods. Two related series of compounds have been considered: HXeXeX (X = F to I) and RXeXeR' (R = halogen atom). Our calculations indicate that the replacement of the fluorine atom by a heavier group 17 congener in the HXeXeX series leads to a less stable compound, thus making more difficult its experimental observation. The same effect occurs in the RXeXeR' series, but these species are more kinetically protected against the decomposition reaction and therefore, their experimental detection is more likely.