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For: Hübschmann T, Börner T. Characterisation of transcript initiation sites in ribosome-deficient barley plastids. Plant Mol Biol 1998;36:493-6. [PMID: 9484490 DOI: 10.1023/a:1005924502336] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Number Cited by Other Article(s)
1
Park HS, Jeon JH, Cho W, Lee Y, Park JY, Kim J, Park YS, Koo HJ, Kang JH, Lee TJ, Kim SH, Kim JB, Kwon HY, Kim SH, Paek NC, Jang G, Suh JY, Yang TJ. High-throughput discovery of plastid genes causing albino phenotypes in ornamental chimeric plants. HORTICULTURE RESEARCH 2022;10:uhac246. [PMID: 36643742 PMCID: PMC9832966 DOI: 10.1093/hr/uhac246] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/10/2022] [Accepted: 10/26/2022] [Indexed: 06/17/2023]
2
Ortelt J, Link G. Plastid Gene Transcription: An Update on Promoters and RNA Polymerases. Methods Mol Biol 2021;2317:49-76. [PMID: 34028762 DOI: 10.1007/978-1-0716-1472-3_2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
3
Castandet B, Germain A, Hotto AM, Stern DB. Systematic sequencing of chloroplast transcript termini from Arabidopsis thaliana reveals >200 transcription initiation sites and the extensive imprints of RNA-binding proteins and secondary structures. Nucleic Acids Res 2020;47:11889-11905. [PMID: 31732725 PMCID: PMC7145512 DOI: 10.1093/nar/gkz1059] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Revised: 10/02/2019] [Accepted: 11/05/2019] [Indexed: 12/23/2022]  Open
4
Facella P, Carbone F, Placido A, Perrotta G. Cryptochrome 2 extensively regulates transcription of the chloroplast genome in tomato. FEBS Open Bio 2017;7:456-471. [PMID: 28396831 PMCID: PMC5377390 DOI: 10.1002/2211-5463.12082] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2016] [Revised: 04/26/2016] [Accepted: 05/03/2016] [Indexed: 11/07/2022]  Open
5
Wang L, Wang C, Wang Y, Niu M, Ren Y, Zhou K, Zhang H, Lin Q, Wu F, Cheng Z, Wang J, Zhang X, Guo X, Jiang L, Lei C, Wang J, Zhu S, Zhao Z, Wan J. WSL3, a component of the plastid-encoded plastid RNA polymerase, is essential for early chloroplast development in rice. PLANT MOLECULAR BIOLOGY 2016;92:581-595. [PMID: 27573887 DOI: 10.1007/s11103-016-0533-0] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2016] [Accepted: 08/22/2016] [Indexed: 06/06/2023]
6
Tarasenko VI, Katyshev AI, Yakovleva TV, Garnik EY, Chernikova VV, Konstantinov YM, Koulintchenko MV. RPOTmp, an Arabidopsis RNA polymerase with dual targeting, plays an important role in mitochondria, but not in chloroplasts. JOURNAL OF EXPERIMENTAL BOTANY 2016;67:5657-5669. [PMID: 27591433 DOI: 10.1093/jxb/erw327] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
7
Multifunctionality of plastid nucleoids as revealed by proteome analyses. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2016;1864:1016-38. [PMID: 26987276 DOI: 10.1016/j.bbapap.2016.03.009] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2015] [Revised: 02/25/2016] [Accepted: 03/09/2016] [Indexed: 01/08/2023]
8
Chevalier F, Ghulam MM, Rondet D, Pfannschmidt T, Merendino L, Lerbs-Mache S. Characterization of the psbH precursor RNAs reveals a precise endoribonuclease cleavage site in the psbT/psbH intergenic region that is dependent on psbN gene expression. PLANT MOLECULAR BIOLOGY 2015;88:357-67. [PMID: 26012647 DOI: 10.1007/s11103-015-0325-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2014] [Accepted: 04/23/2015] [Indexed: 05/15/2023]
9
Nagashima A, Hanaoka M, Motohashi R, Seki M, Shinozaki K, Kanamaru K, Takahashi H, Tanaka K. DNA Microarray Analysis of Plastid Gene Expression in anArabidopsisMutant Deficient in a Plastid Transcription Factor Sigma, SIG2. Biosci Biotechnol Biochem 2014;68:694-704. [PMID: 15056905 DOI: 10.1271/bbb.68.694] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
10
Ortelt J, Link G. Plastid gene transcription: promoters and RNA polymerases. Methods Mol Biol 2014;1132:47-72. [PMID: 24599846 DOI: 10.1007/978-1-62703-995-6_3] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
11
Zhelyazkova P, Sharma CM, Förstner KU, Liere K, Vogel J, Börner T. The primary transcriptome of barley chloroplasts: numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase. THE PLANT CELL 2012;24:123-36. [PMID: 22267485 PMCID: PMC3289561 DOI: 10.1105/tpc.111.089441] [Citation(s) in RCA: 160] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2011] [Revised: 12/09/2011] [Accepted: 01/02/2012] [Indexed: 05/18/2023]
12
Zubo YO, Kusnetsov VV, Börner T, Liere K. Reverse protection assay: a tool to analyze transcriptional rates from individual promoters. PLANT METHODS 2011;7:47. [PMID: 22185205 PMCID: PMC3259058 DOI: 10.1186/1746-4811-7-47] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2011] [Accepted: 12/20/2011] [Indexed: 05/08/2023]
13
Liere K, Weihe A, Börner T. The transcription machineries of plant mitochondria and chloroplasts: Composition, function, and regulation. JOURNAL OF PLANT PHYSIOLOGY 2011;168:1345-60. [PMID: 21316793 DOI: 10.1016/j.jplph.2011.01.005] [Citation(s) in RCA: 68] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2010] [Revised: 01/07/2011] [Accepted: 01/10/2011] [Indexed: 05/04/2023]
14
Hagemann R. The foundation of extranuclear inheritance: plastid and mitochondrial genetics. Mol Genet Genomics 2010;283:199-209. [PMID: 20140454 DOI: 10.1007/s00438-010-0521-z] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2009] [Accepted: 01/27/2010] [Indexed: 12/16/2022]
15
Intraplastidial trafficking of a phage-type RNA polymerase is mediated by a thylakoid RING-H2 protein. Proc Natl Acad Sci U S A 2008;105:9123-8. [PMID: 18567673 DOI: 10.1073/pnas.0800909105] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
16
Colombo N, Emanuel C, Lainez V, Maldonado S, Prina AR, Börner T. The barley plastome mutant CL2 affects expression of nuclear and chloroplast housekeeping genes in a cell-age dependent manner. Mol Genet Genomics 2008;279:403-14. [PMID: 18317810 DOI: 10.1007/s00438-008-0321-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2007] [Accepted: 01/09/2008] [Indexed: 10/22/2022]
17
Swiatecka-Hagenbruch M, Emanuel C, Hedtke B, Liere K, Börner T. Impaired function of the phage-type RNA polymerase RpoTp in transcription of chloroplast genes is compensated by a second phage-type RNA polymerase. Nucleic Acids Res 2007;36:785-92. [PMID: 18084023 PMCID: PMC2241911 DOI: 10.1093/nar/gkm1111] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
18
Courtois F, Merendino L, Demarsy E, Mache R, Lerbs-Mache S. Phage-type RNA polymerase RPOTmp transcribes the rrn operon from the PC promoter at early developmental stages in Arabidopsis. PLANT PHYSIOLOGY 2007;145:712-21. [PMID: 17885088 PMCID: PMC2048797 DOI: 10.1104/pp.107.103846] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2007] [Accepted: 09/07/2007] [Indexed: 05/17/2023]
19
Transcription and transcriptional regulation in plastids. CELL AND MOLECULAR BIOLOGY OF PLASTIDS 2007. [DOI: 10.1007/4735_2007_0232] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
20
Plastid RNA Polymerases. Mol Biol 2005. [DOI: 10.1007/s11008-005-0081-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
21
Shiina T, Tsunoyama Y, Nakahira Y, Khan MS. Plastid RNA polymerases, promoters, and transcription regulators in higher plants. INTERNATIONAL REVIEW OF CYTOLOGY 2005;244:1-68. [PMID: 16157177 DOI: 10.1016/s0074-7696(05)44001-2] [Citation(s) in RCA: 143] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
22
Emanuel C, Weihe A, Graner A, Hess WR, Börner T. Chloroplast development affects expression of phage-type RNA polymerases in barley leaves. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2004;38:460-72. [PMID: 15086795 DOI: 10.1111/j.0960-7412.2004.02060.x] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
23
Hirata N, Yonekura D, Yanagisawa S, Iba K. Possible involvement of the 5'-flanking region and the 5'UTR of plastid accD gene in NEP-dependent transcription. PLANT & CELL PHYSIOLOGY 2004;45:176-86. [PMID: 14988488 DOI: 10.1093/pcp/pch021] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
24
Legen J, Kemp S, Krause K, Profanter B, Herrmann RG, Maier RM. Comparative analysis of plastid transcription profiles of entire plastid chromosomes from tobacco attributed to wild-type and PEP-deficient transcription machineries. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2002;31:171-88. [PMID: 12121447 DOI: 10.1046/j.1365-313x.2002.01349.x] [Citation(s) in RCA: 102] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
25
Hedtke B, Legen J, Weihe A, Herrmann RG, Börner T. Six active phage-type RNA polymerase genes in Nicotiana tabacum. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2002;30:625-37. [PMID: 12061895 DOI: 10.1046/j.1365-313x.2002.01318.x] [Citation(s) in RCA: 58] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
26
Hagemann R. Milestones in Plastid Genetics of Higher Plants. PROGRESS IN BOTANY 2002. [DOI: 10.1007/978-3-642-56276-1_1] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
27
Heifetz PB. Genetic engineering of the chloroplast. Biochimie 2000;82:655-66. [PMID: 10946114 DOI: 10.1016/s0300-9084(00)00608-8] [Citation(s) in RCA: 45] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
28
Bligny M, Courtois F, Thaminy S, Chang CC, Lagrange T, Baruah-Wolff J, Stern D, Lerbs-Mache S. Regulation of plastid rDNA transcription by interaction of CDF2 with two different RNA polymerases. EMBO J 2000;19:1851-60. [PMID: 10775269 PMCID: PMC302015 DOI: 10.1093/emboj/19.8.1851] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
29
Somanchi A, Mayfield SP. Nuclear-chloroplast signalling. CURRENT OPINION IN PLANT BIOLOGY 1999;2:404-409. [PMID: 10508759 DOI: 10.1016/s1369-5266(99)00013-8] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
30
De Santis-MacIossek G, Kofer W, Bock A, Schoch S, Maier RM, Wanner G, Rüdiger W, Koop HU, Herrmann RG. Targeted disruption of the plastid RNA polymerase genes rpoA, B and C1: molecular biology, biochemistry and ultrastructure. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 1999;18:477-89. [PMID: 10417698 DOI: 10.1046/j.1365-313x.1999.00473.x] [Citation(s) in RCA: 106] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
31
Hess WR, Börner T. Organellar RNA polymerases of higher plants. INTERNATIONAL REVIEW OF CYTOLOGY 1999;190:1-59. [PMID: 10331238 DOI: 10.1016/s0074-7696(08)62145-2] [Citation(s) in RCA: 164] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
32
Weihe A, Börner T. Transcription and the architecture of promoters in chloroplasts. TRENDS IN PLANT SCIENCE 1999;4:169-170. [PMID: 10322555 DOI: 10.1016/s1360-1385(99)01407-7] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
33
Dombrowski S, Hoffmann M, Guha C, Binder S. Continuous primary sequence requirements in the 18-nucleotide promoter of dicot plant mitochondria. J Biol Chem 1999;274:10094-9. [PMID: 10187790 DOI: 10.1074/jbc.274.15.10094] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
34
Lahiri SD, Yao J, McCumbers C, Allison LA. Tissue-specific and light-dependent expression within a family of nuclear-encoded sigma-like factors from Zea mays. MOLECULAR CELL BIOLOGY RESEARCH COMMUNICATIONS : MCBRC 1999;1:14-20. [PMID: 10329472 DOI: 10.1006/mcbr.1999.0102] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
35
Kim M, Thum KE, Morishige DT, Mullet JE. Detailed architecture of the barley chloroplast psbD-psbC blue light-responsive promoter. J Biol Chem 1999;274:4684-92. [PMID: 9988705 DOI: 10.1074/jbc.274.8.4684] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
36
Liere K, Maliga P. In vitro characterization of the tobacco rpoB promoter reveals a core sequence motif conserved between phage-type plastid and plant mitochondrial promoters. EMBO J 1999;18:249-57. [PMID: 9878067 PMCID: PMC1171119 DOI: 10.1093/emboj/18.1.249] [Citation(s) in RCA: 92] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
37
Serino G, Maliga P. RNA polymerase subunits encoded by the plastid rpo genes are not shared with the nucleus-encoded plastid enzyme. PLANT PHYSIOLOGY 1998;117:1165-70. [PMID: 9701572 PMCID: PMC34880 DOI: 10.1104/pp.117.4.1165] [Citation(s) in RCA: 79] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/1998] [Accepted: 05/05/1998] [Indexed: 05/20/2023]
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