Activation-tagged tobacco mutants that are tolerant to antimicrotubular herbicides are cross-resistant to chilling stress

A BTB-TAZ protein is required for gene activation by Cauliflower mosaic virus 35S multimerized enhancers

The Arabidopsis (Arabidopsis thaliana) BTB-TAZ DOMAIN PROTEIN 2 (BT2) contains an N-terminal BTB domain, a central TAZ zinc-finger protein-protein interaction domain, and a C-terminal calmodulin-binding domain. We previously demonstrated that BT2 regulates telomerase activity and mediates multiple responses to nutrients, hormones, and abiotic stresses in Arabidopsis. Here, we describe the essential role of BT2 in activation of genes by multimerized Cauliflower mosaic virus 35S (35S) enhancers. Loss of BT2 function in several well-characterized 35S enhancer activation-tagged lines resulted in suppression of the activation phenotypes. Suppression of the phenotypes was associated with decreased transcript abundance of the tagged genes. Nuclear run-on assays, mRNA decay studies, and bisulfite sequencing revealed that BT2 is required to maintain the transcriptionally active state of the multimerized 35S enhancers, and lack of BT2 leads to hypermethylation of the 35S enhancers. The TAZ domain and the Ca++/calmodulin-binding domain of BT2 are critical for its function and 35S enhancer activity. We further demonstrate that BT2 requires CULLIN3 and two bromodomain-containing Global Transcription factor group E proteins (GTE9 and GTE11), to regulate 35S enhancer activity. We propose that the BT2-CULLIN3 ubiquitin ligase, through interactions with GTE9 and GTE11, regulates 35S enhancer activity in Arabidopsis.

Tubulin marker line of grapevine suspension cells as a tool to follow early stress responses

Plant microtubules (MTs), in addition to their role in cell division and cell expansion, respond to various stress signals. To understand the biological function of this early response requires non-destructive strategies for visualization in cellular models that are highly responsive to stress signals. We have therefore generated a transgenic tubulin marker line for a cell line from the grapevine Vitis rupestris that readily responds to stress factors of defense-related and abiotic stresses based on a fusion of the green fluorescent protein with Arabidopsis β-tubulin 6. By a combination of spinning-disk confocal microscopy with quantitative image analysis, we could detect early and specific responses of MTs to defense-related and abiotic stress factors in vivo. We observed that Harpin Z (HrpZ), a bacterial elicitor that can trigger programmed cell death, rapidly eliminated radial MTs, followed by a slower depletion of the cortical array. Jasmonic acid (JA), in contrast, induced bundling of cortical MTs. Auxin reduced the thickness of cortical MTs. This effect followed a characteristic bell-shaped dose-dependency and could revert JA-induced bundling. Impeded cell expansion as a consequence of stress treatment or superoptimal auxin was linked with the appearance of intranuclear tubulin speckles. The early and stimulus-specific responses of MTs are discussed with respect to a function in processing or decoding of stress signals.

Microtubules, signalling and abiotic stress

Plant microtubules, in addition to their role in cell division and axial cell expansion, convey a sensory function that is relevant for the perception of mechanical membrane stress and its derivatives, such as osmotic or cold stress. During development, sensory microtubules participate in the mechanical integration of plant architecture, including the patterning of incipient organogenesis and the alignment with gravity-dependent load. The sensory function of microtubules depends on dynamic instability, and often involves a transient elimination of cortical microtubules followed by adaptive events accompanied by subsequent formation of stable microtubule bundles. It is proposed that microtubules, because of their relative rigidity in combination with their innate nonlinear dynamics, are pre-adapted for a function as mechanosensors and, in concert with the flexible actin filaments and the anisotropic cell wall, comprise a tensegral system that allows plant cells to sense geometry and to respond to fields of mechanical strains such that the load is minimized. Microtubules are proposed as elements of a sensory hub that decodes stress-related signal signatures, with phospholipase D as an important player.

Two anti-microtubular drugs for two differential responses: a rice cell line resistant to EPC remains susceptible to oryzalin

Sensitivity to the two anti-microtubular drugs oryzalin and EPC (ethyl-N-phenylcarbamate) is shown to be uncoupled in the rice EPC-resistant ER31d cell line, derived from the corresponding ER31 mutant. The ER31d cell line grows in the presence of EPC but it remains susceptible to oryzalin. In the presence of concentrations of EPC up to 0.4 mM, ER31d cells remain viable maintaining cell anisotropy and detectable cortical microtubule array. The amount of α- and β-tubulin is also maintained high through a regulatory mechanism that operates at post-transcriptional level. In contrast, all these cellular and molecular parameters are heavily affected by the addition of 1 μM oryzalin. Also, the pattern of post-translationally modified α-tubulins changes in the ER31d cells compared to that of their Nihon-Masari wild type line of reference. The different response elicited by the two herbicides is discussed in relation to a possible differential sensitivity of the cortical MT array, that may in turn relate to their different tubulin-binding specificities and chemical structure.

Microtubules and the tax payer

Plant microtubules have evolved into a versatile tool to link environmental signals into flexible morphogenesis. Cortical microtubules define the axiality of cell expansion by control of cellulose orientation. Plant-specific microtubule structures such as preprophase band and phragmoplast determine symmetry and axiality of cell divisions. In addition, microtubules act as sensors and integrators for stimuli such as mechanic load, gravity, but also osmotic stress, cold and pathogen attack. Many of these functions are specific for plants and involve specific proteins or the recruitment of proteins to new functions. The review aims to ventilate the potential of microtubule-based strategies for biotechnological application by highlighting representative case studies. These include reorientation of cortical microtubules to increase lodging resistance, control of microtubule dynamics to alter the gravity-dependent orientation of leaves, the use of microtubules as sensitive thermometers to improve adaptive cold tolerance of chilling and freezing sensitive plants, the reduction of microtubule treadmilling to inhibit cell-to-cell transport of plant viruses, or the modulation of plant defence genes by pharmacological manipulation of microtubules. The specificity of these responses is controlled by a great variety of specific associated proteins opening a wide field for biotechnological manipulation of plant architecture and stress tolerance.

Activation tagging

Insertional mutagenesis is one of the most effective approaches to determine the function of plant genes. However, due to genetic redundancy, loss-of-function mutations often fail to reveal the function of a member of gene families. Activation tagging is a powerful gain-of-function approach to reveal the functions of genes, especially those with high sequence similarity recalcitrant to loss-of-function genetic analyses. Activation tagging randomly inserts a T-DNA fragment containing engineered four copies of enhancer element into a plant genome to activate transcription of flanking genes. We recently generated a new binary vector, pBASTA-AT2, which has been efficiently used to discover genes involved in BR biosynthesis, metabolism, and signal transduction. Compared to pSKI015, a commonly used activation tagging vector, pBASTA-AT2, contains a smaller size of T-DNA and a bigger number of unique restriction sites within the T-DNA region, making cloning of the flanking sequence a lot easier. Our analysis indicated that pBASTA-AT2 gives dramatically improved transformation efficiency relative to pSKI015. In this article, detailed information about this activation tagging vector and the protocol for its application are provided. Three recommended gene cloning approaches based on the use of pBASTA-AT2, including inverse PCR, thermal asymmetric interlaced PCR, and adaptor ligation-mediated PCR, are described to identify T-DNA insertion sites after selection of activation-tagged mutant plants.

Tobacco mutants with reduced microtubule dynamics are less susceptible to TMV

A panel of seven SR1 tobacco mutants (ATER1 to ATER7) derived via T-DNA activation tagging and screening for resistance to a microtubule assembly inhibitor, ethyl phenyl carbamate, were used to study the role of microtubules during infection and spread of tobacco mosaic virus (TMV). In one of these lines, ATER2, alpha-tubulin is shifted from the tyrosinylated into the detyrosinated form, and the microtubule plus-end marker GFP-EB1 moves significantly slower when expressed in the background of the ATER2 mutant as compared with the SR1 wild type. The efficiency of cell-to-cell movement of TMV encoding GFP-tagged movement protein (MP-GFP) is reduced in ATER2 accompanied by a reduced association of MP-GFP with plasmodesmata. This mutant is also more tolerant to viral infection as compared with the SR1 wild type, implying that reduced microtubule dynamics confer a comparative advantage in face of TMV infection.

High-throughput characterization of plant gene functions by using gain-of-function technology

Gain-of-function approaches have been used as an alternative or complementary method to loss-of-function approaches as well as to confer new functions to plants. Gain-of-function is achieved by increasing gene expression levels through the random activation of endogenous genes by transcriptional enhancers or the expression of individual transgenes by transformation. The advantages of gain-of-function approaches compared to loss-of-function approaches for the characterization of gene functions include the abilities to (a) analyze individual gene family members, (b) characterize the function of genes from nonmodel plants using a heterologous expression system, and (c) identify genes that confer stress tolerance to plants that result from the introduction of transgenes. In this review, we describe the current status of gain-of-function mutagenesis and provide several examples of how gene functions have been characterized via high-throughput screening using gain-of-function technology.

Genetic technologies for the identification of plant genes controlling environmental stress responses

Abiotic conditions such as light, temperature, water availability and soil parameters determine plant growth and development. The adaptation of plants to extreme environments or to sudden changes in their growth conditions is controlled by a well balanced, genetically determined signalling system, which is still far from being understood. The identification and characterisation of plant genes which control responses to environmental stresses is an essential step to elucidate the complex regulatory network, which determines stress tolerance. Here, we review the genetic approaches, which have been used with success to identify plant genes which control responses to different abiotic stress factors. We describe strategies and concepts for forward and reverse genetic screens, conventional and insertion mutagenesis, TILLING, gene tagging, promoter trapping, activation mutagenesis and cDNA library transfer. The utility of the various genetic approaches in plant stress research we review is illustrated by several published examples.

Activated expression of an Arabidopsis HD-START protein confers drought tolerance with improved root system and reduced stomatal density

Drought is one of the most important environmental constraints limiting plant growth and agricultural productivity. To understand the underlying mechanism of drought tolerance and to identify genes for improving this important trait, we conducted a gain-of-function genetic screen for improved drought tolerance in Arabidopsis thaliana. One mutant with improved drought tolerance was isolated and designated as enhanced drought tolerance1. The mutant has a more extensive root system than the wild type, with deeper roots and more lateral roots, and shows a reduced leaf stomatal density. The mutant had higher levels of abscisic acid and Pro than the wild type and demonstrated an increased resistance to oxidative stress and high levels of superoxide dismutase. Molecular genetic analysis and recapitulation experiments showed that the enhanced drought tolerance is caused by the activated expression of a T-DNA tagged gene that encodes a putative homeodomain-START transcription factor. Moreover, overexpressing the cDNA of the transcription factor in transgenic tobacco also conferred drought tolerance associated with improved root architecture and reduced leaf stomatal density. Therefore, we have revealed functions of the homeodomain-START factor that were gained upon altering its expression pattern by activation tagging and provide a key regulator that may be used to improve drought tolerance in plants.

A barley activation tagging system

Activation tagging, as the result of random genomic insertion of either promoter or enhancer sequences, can produce novel, dominant mutations by over-expression of endogenous genes. This powerful genomics tool has been used extensively in dicot species such as Arabidopsis, while rice is the only cereal for which an equivalent system exists. In this study we describe an activation tagging system in barley based upon the maize Ac/Ds transposable element system. A modified Ds element (UbiDs) containing two maize polyubiquitin promoters, transposed in families derived from multiple independent UbiDs transformants and generated new Ds insertion events at frequencies ranging from 0% to 52% per family. The majority of transposed UbiDs elements activated high levels of adjacent flanking sequence transcription. Transposon-mediated expression was detected in all barley cell and tissue types analysed suggesting that this system is applicable to all aspects of plant development and biogenesis. In addition to transcriptional activation, this system is also capable of generating insertional knockout mutants and a UbiDs inactivated allele of the granule bound starch synthase I gene (waxy) was recovered that lead to reduced amylose accumulation. The recovery and analysis of dominant over-expression phenotypes generated by this system will provide a novel approach to understanding gene function in large cereal genomes where gene redundancy may mask conventional loss-of-function mutations.

Activation tagging in plants—generation of novel, gain-of-function mutations

Activation tagging is a mutagenesis strategy that generates dominant, gain-of-function mutations as a consequence of gene over-expression. These mutations cause a class of mutant previously unobtainable by conventional mutagenesis. Unlike most mutant phenotypes, which are generally a consequence of gene inactivation, activation tagged phenotypes arise from excess functional gene product. Gene over-expression mutations are obtained by randomly inserting regulatory sequences throughout the genome, using either high-throughput plant transformation or mobile transposable elements to distribute these regulatory elements. Since the sequence of the regulatory element vector is known, it acts as a molecular tag, making isolation of the over-expressed gene a relatively straightforward process using standard molecular biological techniques. Activation tagged phenotypes have been generated by the over-expression of genes encoding a diverse range of protein and RNA products that are involved in all aspects of plant biogenesis. This mutation approach has been used extensively in Arabidopsis and to a lesser extent in several other species. In this review we summarise activation tagging in plants and suggest that the development of this mutagenesis strategy in more plants of agronomic significance is highly desirable.

Actin is bundled in activation-tagged tobacco mutants that tolerate aluminum

A panel of aluminum-tolerant (AlRes) mutants was isolated by protoplast-based T-DNA activation tagging in the tobacco cultivar SR1. The mutants fell into two phenotypic classes: a minority of the mutants were fertile and developed similarly to the wild type (type I), the majority was male-sterile and grew as semi-dwarfs (type II). These traits, along with the aluminum tolerance, were inherited in a monogenic dominant manner. Both types of mutants were characterized by excessive bundling of actin microfilaments and by a strongly increased abundance of actin, a phenotype that could be partially phenocopied in the wild type by treatment with aluminum chloride. The actin bundles could be dissociated into finer strands by addition of exogenous auxin in both types of mutants. However, actin microfilaments and leaf expansion were sensitive to blockers of actin assembly in the wild type and in the mutants of type I, whereas they were more tolerant in the mutants of type II. The mutants of type II displayed a hypertrophic development of vasculature, manifest in form of supernumerary leaf veins and extended xylem layers in stems and petioles. Whereas mutants of type I were characterized by a normal, but aluminum-tolerant polar auxin-transport, auxin-transport was strongly promoted in the mutants of type II. The phenotype of these mutants is discussed in terms of reduced endocytosis leading, concomitantly with aluminum tolerance, to changes in polar auxin transport.

Salt stress-induced programmed cell death in tobacco protoplasts is mediated by reactive oxygen species and mitochondrial permeability transition pore status

The status of mitochondrial permeability transition pore (PTP) and levels of reactive oxygen species (ROS) play key roles in regulating apoptosis in animal cells. To investigate if the PTP and cellular oxidation-reduction state are also involved in salt stress-induced programmed cell death (PCD) in tobacco (Nicotiana tabacum, cultivar BY-2) protoplasts, flow cytometry was used to simultaneously monitor ROS levels, PTP status and PCD. Increased ROS and decreased mitochondrial membrane potential (delta psi(m)) were observed before the appearance of PCD. Pre-treatment with an inhibitor of the PTP opening, cyclosporin A (CsA), effectively retarded the onset of PCD, the delta psi(m) decrease and the ROS content increase. Addition of ascorbic acid (AsA) during the salt stress significantly decreased the percentage of protoplasts undergoing PCD and ROS levels but increased delta psi(m). Hydrogen peroxide effectively induced the appearance of PCD and caused an increase in ROS and a decrease in delta psi(m). Pre-treatment of protoplasts with CsA weakened the effects of H2O2. All these results suggest that the open state of PTP and ROS are necessary elements for salt stress-induced PCD in tobacco protoplasts. The open states of PTP and ROS could promote each other suggesting that ROS could lead to a self-amplifying process. This positive feedback loop may act as an all-or-nothing switch, which is in good accordance with the hypothesis that PTP is an important coordinator and executioner of PCD in both animals and plants.

Activation tagging approach in a model legume, Lotus japonicus

We constructed T-DNA insertional lines of a model legume, Lotus japonicus, using a multifunctional vector for gene and exon activation tagging. The vector had the CaMV 35S promoter together with two additional enhancer elements, the start codon, and splice donor and acceptor sites facing the left border, in anticipation of the activation of T-DNA flanking genes and forced expression of flanking exons. The improved transformation technique yielded more than 3,500 lines, including 45 dominant mutant candidates with abnormal phenotypes with respect to aerial parts, nodules, and roots. Among the 44 selected lines, one copy of T-DNA was inserted into the genome of 37 lines (84%). The T-DNA flanking regions of seven lines were isolated by thermal asymmetric interlaced (TAIL)-PCR or reverse transcription (RT)-PCR, and the corresponding genomic clones were analyzed. The transcripts of four genes adjacent to T-DNA out of 11 genes tested were increased in the T(1) generation, demonstrating that gene and exon activation effects by the newly developed tagging vector are heritable. The T-DNA insertional population of L. japonicus will provide legume-specific dominant mutants.

Genetic transformation: a powerful tool for dissection of adaptive traits in trees

Plant transformation and regeneration systems have become indispensable parts of gene discovery and functional characterization over the last two decades. Adoption of transformation methods in studies of plant adaptation to natural environments has been slow. This is a result of poor genomic knowledge and inefficient transformation systems for species dominating terrestrial ecosystems, and logistical difficulties in conducting field tests of genetically engineered organisms. In trees, where long generation cycles, high background polymorphism, large sizes and outcrossing systems of mating make production of near-isogenic lines and large experiments difficult, transformation is an attractive alternative for establishing direct linkages between genes and adaptively significant phenotypes. Here, we outline the capabilities, challenges, and prospects for transformation to become a significant tool for studying the ecophysiological adaptation of trees to the environment. Focusing on poplars (genus Populus) as model system, we describe how transformation-based approaches can provide insights into the genes that control adaptive traits. The availability of the poplar genome sequence, along with its large expressed sequences tag (EST) databanks, facile transformation and rapid growth, enable reverse genetic approaches to be used to test virtually any hypothesis of gene function.

Predictable activation of tissue-specific expression from a single gene locus using the pOp/LhG4 transactivation system in Arabidopsis

The pOp/LhG4 transcription factor system was used to determine whether the synthetic pOp promoter, integrated at one position in the Arabidopsis genome, could be efficiently and faithfully activated by the heterologous transcription factor, LhG4, expressed in a variety of different patterns. This is a precondition for the development and exploitation of large collections of LhG4 activation lines that direct predictable tissue-specific expression of transgenes. We selected a pOp-GUS reporter insertion that was efficiently activated after crossing to an activator line that expressed the synthetic transcription factor LhG4 from the Cauliflower Mosaic Virus 35S promoter. This reporter line, pOp-GUS(g2), was then combined with activator loci that expressed LhG4 from one of seven different promoters, each with a different tissue specificity. pOp-GUS(g2) was activated faithfully in combination with six of these seven activator constructs, but generated an unexpected expression pattern in combination with the seventh construct, a fusion to a cyclin promoter (CYC-LhG4). The aberrant expression pattern could be attributed to the pOp-GUS(g2) insertion site, as the CYC-LhG4 activator lines directed the expected pattern of expression from a second pOp-GUS insertion. These results show that it is feasible to construct an activator collection in which LhG4 is expressed from diverse promoters or enhancer traps, but that individual pOp reporter loci can vary in their competence to respond to certain activator patterns. We discuss the implications for the design and use of mis-expression technology in Arabidopsis.