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Han X, Wang F, Zheng S, Qiu H, Liu Y, Wang J, Menguy N, Leroy E, Bourgon J, Kappler A, Liu F, Pan Y, Li J. Morphological, Microstructural, and In Situ Chemical Characteristics of Siderite Produced by Iron-Reducing Bacteria. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024; 58:11016-11026. [PMID: 38743591 DOI: 10.1021/acs.est.3c10988] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2024]
Abstract
Dissimilatory iron-reducing bacteria (DIRB) oxidize organic matter or hydrogen and reduce ferric iron to form Fe(II)-bearing minerals, such as magnetite and siderite. However, compared with magnetite, which was extensively studied, the mineralization process and mechanisms of siderite remain unclear. Here, with the combination of advanced electron microscopy and synchrotron-based scanning transmission X-ray microscopy (STXM) approaches, we studied in detail the morphological, structural, and chemical features of biogenic siderite via a growth experiment with Shewanella oneidensis MR-4. Results showed that along with the growth of cells, Fe(II) ions were increasingly released into solution and reacted with CO32- to form micrometer-sized siderite minerals with spindle, rod, peanut, dumbbell, and sphere shapes. They are composed of many single-crystal siderite plates that are fanned out from the center of the particles. Additionally, STXM revealed Fh and organic molecules inside siderite. This suggests that the siderite crystals might assemble around a Fh-organic molecule core and then continue to grow radially. This study illustrates the biomineralization and assembly of siderite by a successive multistep growth process induced by DIRB, also provides evidences that the distinctive shapes and the presence of organic molecules inside might be morphological and chemical features for biogenic siderite.
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Affiliation(s)
- Xiaohua Han
- Key Laboratory of Earth and Planetary Physics, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing 100029, China
- Laboratory for Marine Geology, Qingdao Marine Science and Technology Center, Qingdao 266237, China
- Southern Marine Science and Engineering Guangdong Laboratory, Zhuhai 519082, China
- College of Earth and Planetary Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Fuxian Wang
- Key Laboratory of Earth and Planetary Physics, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing 100029, China
- Laboratory for Marine Geology, Qingdao Marine Science and Technology Center, Qingdao 266237, China
- Southern Marine Science and Engineering Guangdong Laboratory, Zhuhai 519082, China
- College of Earth and Planetary Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Shiling Zheng
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, Shandong 264003, China
| | - Hao Qiu
- Key Laboratory of Earth and Planetary Physics, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing 100029, China
- Laboratory for Marine Geology, Qingdao Marine Science and Technology Center, Qingdao 266237, China
- Southern Marine Science and Engineering Guangdong Laboratory, Zhuhai 519082, China
- College of Earth and Planetary Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yan Liu
- Key Laboratory of Earth and Planetary Physics, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing 100029, China
- Laboratory for Marine Geology, Qingdao Marine Science and Technology Center, Qingdao 266237, China
- Southern Marine Science and Engineering Guangdong Laboratory, Zhuhai 519082, China
- College of Earth and Planetary Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jian Wang
- Canadian Light Source Inc., University of Saskatchewan, Saskatoon, Saskatchewan S7N 2 V3, Canada
| | - Nicolas Menguy
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), Sorbonne Université, UMR 7590 CNRS, MNHN, IRD, 75252 Paris Cedex 5, France
| | - Eric Leroy
- Univ Paris Est Creteil, CNRS, ICMPE, UMR 7182, 2 Rue Henri Dunant, Thiais F-94320, France
| | - Julie Bourgon
- Univ Paris Est Creteil, CNRS, ICMPE, UMR 7182, 2 Rue Henri Dunant, Thiais F-94320, France
| | - Andreas Kappler
- Geomicrobiology, Department of Geosciences, University of Tübingen, Schnarrenbergstrasse 94-96, Tübingen 72076, Germany
| | - Fanghua Liu
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, Shandong 264003, China
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Yongxin Pan
- Key Laboratory of Earth and Planetary Physics, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing 100029, China
- College of Earth and Planetary Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jinhua Li
- Key Laboratory of Earth and Planetary Physics, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing 100029, China
- Laboratory for Marine Geology, Qingdao Marine Science and Technology Center, Qingdao 266237, China
- College of Earth and Planetary Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
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Pasechnik LA, Skachkov VM, Bibanaeva SA, Medyankina IS, Bamburov VG. Composition and Properties of Iron Oxides in the Products of Hydrothermal Treatment of Red Mud and Bauxites. RUSS J INORG CHEM+ 2022. [DOI: 10.1134/s0036023622060183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Yıldız Yorgun N. Gamma-ray shielding parameters of Li2B4O7 glasses: undoped and doped with magnetite, siderite and Zinc-Borate minerals cases. RADIOCHIM ACTA 2019. [DOI: 10.1515/ract-2019-0014] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Designing new shielding materials and calculating their shielding parameters are important task to keep living in safe from hazardous effects of radiation. In this study, the lithium borate glasses with chemical formula (Li2B4O7)(100−x)Yx (x = 0, 10, 20, 30 and 40 wt % and Y = magnetite, siderite and zinc-borate) were fabricated via melt quenching technique. X-ray diffraction method was employed to confirm amorphous structure of fabricated glass samples. The glass sample’s shielding parameters such as mass attenuation coefficient, effective atomic number, and half value layer were measured experimentally by the narrow beam transmission method for 81, 276, 302, 356, and 383 keV of incident photon energies. Also, WinXCom software was used to calculate theoretical shielding parameters from 1 keV to 105 MeV photon energy. Moreover, Geometric Progression (G–P) method was used to calculate exposure buildup factor (EBF) values for incident photon energy 0.015 MeV–15 MeV up to penetration depths of 40 mfp (mean free path). Among the obtained results, while Li2B4O7 glass with magnetite 40 % has the highest mass attenuation and effective atomic number, it has the lowest half value layer and exposure buildup factor. The results show that the fabricated glass systems could be considered as a good candidate for radiation safety.
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Affiliation(s)
- Nergiz Yıldız Yorgun
- Van Yüzüncü Yıl University , Faculty of Science, Department of Physics , 65080 Van , Turkey
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Timing of the Brunhes-Matuyama transition constrained by U-series disequilibrium. Sci Rep 2019; 9:6039. [PMID: 30988519 PMCID: PMC6465598 DOI: 10.1038/s41598-019-42567-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2019] [Accepted: 04/03/2019] [Indexed: 12/02/2022] Open
Abstract
U-series disequilibrium measurements carried out on thermogenic travertine samples from a 12.6 m-long core and a 10 m-thick section from southeastern Morocco yielded finite ages ranging from 500 ka to the present-day, as well as two clusters determined to be older than 500 ka. The calculation of initial 234U/238U activity ratios in all samples younger than 500 ka shows high, reasonably constant values, with an average of 5.172 ± 0.520 (one standard deviation). Assuming that this value prevailed for periods older than 500 ka, we derived ages of up to approximately 1.2 Ma using the initial 234U excess decay. Our results indicate that the two older clusters have ages of 776 ± 14 ka for samples from between 8 and 10.1 m and 1173 ± 22 ka for deeper samples respectively. The palaeomagnetic record of the core shows normal polarity inclinations from the surface to around 9 m followed by reverse polarity inclination and antipodal declinations. The inversion is attributed to the Brunhes-Matuyama transition. 234U excess ages for the interval corresponding to the part of the core where the polarity inversion occurred are in the range of 735 ± 51 to 794 ± 54 ka, with an arithmetic mean value of 776 ± 14 ka for the B-M transition. This age is in good agreement with that determined previously using other dating methods.
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Wang L, Hu S, Ma M, Wang X, Wang Q, Zhang Z, Shen J. Responses of magnetic properties to heavy metal pollution recorded by lacustrine sediments from the Lugu Lake, Southwest China. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2018; 25:26527-26538. [PMID: 29992412 DOI: 10.1007/s11356-018-2725-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2018] [Accepted: 07/05/2018] [Indexed: 06/08/2023]
Abstract
Environmental magnetism, which is rapid, sensitive, economical, and non-destructive, has been used to assess heavy metal pollution in lake sediments based on the relationships between magnetic properties and heavy metal concentrations. We conducted a systematic environmental magnetic and heavy metal study of the sediments of the core LGS from Lugu Lake in Southwest China. The results show that the concentration-related magnetic parameters (χ, χARM, and SIRM) in the core LGS showed an increasing trend from bottom to top. The results of rock magnetism indicated that the dominant magnetic particles were magnetite. Two sources of magnetic minerals can be distinguished by the correlations of χ vs. χfd% and χ vs. χARM/χ: the surrounding catchment and anthropogenic activities. In addition, Pearson correlation analysis and principal component analysis showed that the concentration-dependent magnetic parameters have significant correlations with heavy metal (Al, Ti, Fe, Cr, Ni, Cu, Zn, and Cd) concentrations as well as the Tomlinson pollution load index (PLI), indicating that there are essential linkages of sources, deposition, and migration between magnetic particles and heavy metals. Based on previously reported 137Cs and 210Pb data, the historical trends of heavy metal pollution in Lugu Lake were successfully reconstructed, and the causes of heavy metal pollution were mainly agricultural practices and atmospheric metal depositions from anthropogenic sources. The significant correlations between magnetic parameters, heavy metals, and the PLI indicate that magnetic parameters can potentially be used as an index of heavy metal pollution in lacustrine deposits.
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Affiliation(s)
- Longsheng Wang
- Coast Institute of Ludong University, Yantai, 264025, China.
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China.
| | - Shouyun Hu
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China.
| | - Mingming Ma
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Xiaohui Wang
- Coast Institute of Ludong University, Yantai, 264025, China
| | - Qing Wang
- Coast Institute of Ludong University, Yantai, 264025, China
| | - Zhenhua Zhang
- Coast Institute of Ludong University, Yantai, 264025, China
| | - Ji Shen
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China
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Civeira MS, Pinheiro RN, Gredilla A, de Vallejuelo SFO, Oliveira MLS, Ramos CG, Taffarel SR, Kautzmann RM, Madariaga JM, Silva LFO. The properties of the nano-minerals and hazardous elements: Potential environmental impacts of Brazilian coal waste fire. THE SCIENCE OF THE TOTAL ENVIRONMENT 2016; 544:892-900. [PMID: 26706762 DOI: 10.1016/j.scitotenv.2015.12.026] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2015] [Revised: 11/20/2015] [Accepted: 12/05/2015] [Indexed: 06/05/2023]
Abstract
Brazilian coal area (South Brazil) impacted the environment by means of a large number of coal waste piles emplaced over the old mine sites and the adjacent areas of the Criciúma, Urussanga, and Siderópolis cities. The area studied here was abandoned and after almost 30 years (smokeless visual) some companies use the actual minerals derived from burning coal cleaning rejects (BCCRs) complied in the mentioned area for industry tiles or refractory bricks. Mineralogical and geochemical similarities between the BCCRs and non-anthropogenic geological environments are outlined here. Although no visible flames were observed, this study revealed that auto-combustion existed in the studied area for many years. The presence of amorphous phases, mullite, hematite and other Fe-minerals formed by high temperature was found. There is also pyrite, Fe-sulphates (eg. jarosite) and unburnt coal present, which are useful for comparison purposes. Bad disposal of coal-dump wastes represents significant environmental concerns due to their potential influence on atmosphere, river sediments, soils and as well as on the surface and groundwater in the surroundings of these areas. The present study using advanced analytical techniques were performed to provide an improved understanding of the complex processes related with sulphide-rich coal waste oxidation, spontaneous combustion and mineral formation. It is reporting huge numbers of rare minerals with alunite, montmorillonite, szomolnokite, halotrichite, coquimbite and copiapite at the BCCRs. The data showed the presence of abundant amorphous Si-Al-Fe-Ti as (oxy-)hydroxides and Fe-hydro/oxides with goethite and hematite with various degrees of crystallinity, containing hazardous elements, such as Cu, Cr, Hf, Hg, Mo, Ni, Se, Pb, Th, U, Zr, and others. By Principal Component Analysis (PCA), the mineralogical composition was related with the range of elemental concentration of each sample. Most of the nano-minerals and ultra-fine particles found in the burned coal-dump wastes are the same as those commonly associated with coal cleaning rejects, in which oxidation of sulphides plays an important role to environment and human health.
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Affiliation(s)
- Matheus S Civeira
- Laboratory of Environmental Researches and Nanotechnology Development, Centro Universitário La Salle, Victor Barreto, 2288 Centro, 92010-000 Canoas, RS, Brazil
| | - Rafael N Pinheiro
- Laboratory of Environmental Researches and Nanotechnology Development, Centro Universitário La Salle, Victor Barreto, 2288 Centro, 92010-000 Canoas, RS, Brazil
| | - Ainara Gredilla
- University of the Basque Country (UPV/EHU), Faculty of Science and Technology, Department of Analytical Chemistry, P.O. Box 644, 48080 Bilbao, Spain
| | - Silvia Fdez Ortiz de Vallejuelo
- University of the Basque Country (UPV/EHU), Faculty of Science and Technology, Department of Analytical Chemistry, P.O. Box 644, 48080 Bilbao, Spain
| | - Marcos L S Oliveira
- Laboratory of Environmental Researches and Nanotechnology Development, Centro Universitário La Salle, Victor Barreto, 2288 Centro, 92010-000 Canoas, RS, Brazil
| | - Claudete G Ramos
- Laboratory of Environmental Researches and Nanotechnology Development, Centro Universitário La Salle, Victor Barreto, 2288 Centro, 92010-000 Canoas, RS, Brazil
| | - Silvio R Taffarel
- Laboratory of Environmental Researches and Nanotechnology Development, Centro Universitário La Salle, Victor Barreto, 2288 Centro, 92010-000 Canoas, RS, Brazil
| | - Rubens M Kautzmann
- Laboratory of Environmental Researches and Nanotechnology Development, Centro Universitário La Salle, Victor Barreto, 2288 Centro, 92010-000 Canoas, RS, Brazil
| | - Juan Manuel Madariaga
- University of the Basque Country (UPV/EHU), Faculty of Science and Technology, Department of Analytical Chemistry, P.O. Box 644, 48080 Bilbao, Spain
| | - Luis F O Silva
- Laboratory of Environmental Researches and Nanotechnology Development, Centro Universitário La Salle, Victor Barreto, 2288 Centro, 92010-000 Canoas, RS, Brazil.
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Emmerton S, Muxworthy AR, Sephton MA. Magnetic characterization of oil sands at Osmington Mills and Mupe Bay, Wessex Basin, UK. ACTA ACUST UNITED AC 2012. [DOI: 10.1144/sp371.6] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
AbstractThis study combines magnetic experimentation and geochemical analysis on oil sands from Osmington Mills and Mupe Bay, Wessex Basin, UK to investigate the possibility of a relationship between hydrocarbons and magnetic mineralogy. Removal of hydrocarbons by chemical extraction was conducted to allow comparison of (1) oil sands and (2) cleaned sands. Detailed magnetic analysis including low-temperature and high-temperature experimentation revealed that all but one sample was dominated by siderite, identified by the Néel transition at 37–38 K as well as containing large grains of multidomain magnetite (Verwey transition 110 K) and hematite (Morin transition 250 K). Scanning electron microscopy and energy dispersive x-ray analysis confirmed the presence of iron oxides, in particular framboids 500 nm–45 µm in diameter, probably magnetite. Hysteresis parameters showed distinct grouping of oil sands compared to their clean counterparts and a negative linear regression in log space was observed (R2=0.7) between the percentage of extractable organic matter and magnetic susceptibility. These results suggest a relationship exists between magnetic minerals and the alteration of oil due to biodegradation, which is not yet fully understood. Possible mechanisms are suggested to be due to anaerobic bacteria or the transportation of the oil as it migrates through the host rock.
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Affiliation(s)
- Stacey Emmerton
- Department of Earth Science and Engineering, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK
| | - Adrian R. Muxworthy
- Department of Earth Science and Engineering, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK
| | - Mark A Sephton
- Department of Earth Science and Engineering, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK
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Wang L, Pan Y, Li J, Qin H. Magnetic properties related to thermal treatment of pyrite. ACTA ACUST UNITED AC 2008. [DOI: 10.1007/s11430-008-0083-7] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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9
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Rock magnetism and magnetic anisotropy in folded sills and basaltic flows: A case study of volcanics from the Taimyr Peninsula, Northern Russia. CHINESE SCIENCE BULLETIN-CHINESE 2008. [DOI: 10.1007/s11434-008-0069-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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10
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Madsen MB, Bertelsen P, Goetz W, Binau CS, Olsen M, Folkmann F, Gunnlaugsson HP, Kinch KM, Knudsen JM, Merrison J, Nørnberg P, Squyres SW, Yen AS, Rademacher JD, Gorevan S, Myrick T, Bartlett P. Magnetic Properties Experiments on the Mars Exploration Rover mission. ACTA ACUST UNITED AC 2003. [DOI: 10.1029/2002je002029] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- M. B. Madsen
- Center for Planetary Science, Niels Bohr Institute for Astronomy, Physics and Geophysics; University of Copenhagen; Copenhagen Denmark
| | - P. Bertelsen
- Center for Planetary Science, Niels Bohr Institute for Astronomy, Physics and Geophysics; University of Copenhagen; Copenhagen Denmark
| | - W. Goetz
- Center for Planetary Science, Niels Bohr Institute for Astronomy, Physics and Geophysics; University of Copenhagen; Copenhagen Denmark
| | - C. S. Binau
- Center for Planetary Science, Niels Bohr Institute for Astronomy, Physics and Geophysics; University of Copenhagen; Copenhagen Denmark
| | - M. Olsen
- Center for Planetary Science, Niels Bohr Institute for Astronomy, Physics and Geophysics; University of Copenhagen; Copenhagen Denmark
| | - F. Folkmann
- Department of Physics and Astronomy; University of Århus; Århus Denmark
| | | | - K. M. Kinch
- Department of Physics and Astronomy; University of Århus; Århus Denmark
| | - J. M. Knudsen
- Department of Physics and Astronomy; University of Århus; Århus Denmark
| | - J. Merrison
- Department of Physics and Astronomy; University of Århus; Århus Denmark
| | - P. Nørnberg
- Department of Earth Sciences; University of Århus; Århus Denmark
| | - S. W. Squyres
- Center for Radiophysics and Space Research, Astronomy Department; Cornell University; Ithaca USA
| | - A. S. Yen
- Jet Propulsion Laboratory; California Institute of Technology; Pasadena California USA
| | - J. D. Rademacher
- Jet Propulsion Laboratory; California Institute of Technology; Pasadena California USA
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Isambert A, Valet JP, Gloter A, Guyot F. Stable Mn-magnetite derived from Mn-siderite by heating in air. ACTA ACUST UNITED AC 2003. [DOI: 10.1029/2002jb002099] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- A. Isambert
- Laboratoire de Paléomagnétisme; Institut de Physique du Globe de Paris; Paris France
| | - J.-P. Valet
- Laboratoire de Paléomagnétisme; Institut de Physique du Globe de Paris; Paris France
| | - A. Gloter
- Laboratoire de Physique des Solides; Université Paris Sud; Orsay France
| | - F. Guyot
- Laboratoire de Minéralogie et de Cristallographie de Paris; Institut de Physique du Globe de Paris; Paris France
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Pan Y, Zhu R, John S, Zhou Y. Magnetic polarity ages of the fossil-bearing strata at the Si-hetun section, West Liaoning: A preliminary result. ACTA ACUST UNITED AC 2001. [DOI: 10.1007/bf03187035] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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