Landscape burning facilitated Aboriginal migration into Lutruwita/Tasmania 41,600 years ago

The establishment of Tasmanian Palawa/Pakana communities ~40 thousand years ago (ka) was achieved by the earliest and farthest human migrations from Africa and necessitated migration into high-latitude Southern Hemisphere environments. The scarcity of high-resolution paleoecological records during this period, however, limits our understanding of the environmental effects of this pivotal event, particularly the importance of using fire as a tool for habitat modification. We use two paleoecological records from the Bass Strait islands to identify the initiation of anthropogenic landscape transformation associated with ancestral Palawa/Pakana land use. People were living on the Tasmanian/Lutruwitan peninsula by ~41.6 ka using fire to penetrate and manipulate forests, an approach possibly used in the first migrations across the last glacial landscape of Sahul.

Modulation of the northward penetration of Antarctica intermediate waters into the eastern equatorial Indian Ocean under glacial and interglacial conditions

The Indo-Pacific warm pool is the warmest and most dynamic ocean-atmosphere-climate system on Earth and was subject to significant climate changes during the Pleistocene glacial-interglacial transitions. This has been shown to significantly affected the strength of surface waters that redistribute heat from the tropics to the southern part of the Indian Ocean. Here we investigate the response of the oceanic circulation at intermediate depth (1200 m) of the eastern equatorial Indian Ocean (EEIO) with neodymium (Nd) isotopes in the context of the climatic oscillation of the last 500 ka. The most striking feature of our new dataset is the seesaw Nd record that mimics glacial-interglacial cycles. While the interglacial periods are characterized by a higher contribution of the less radiogenic neodymium (~ - 7εNd) Antarctic Intermediate Water (AAIW), the glacial periods are characterized by more radiogenic water mass of Pacific origin (~ - 5εNd). To explain the increase in the εNd signature toward a more radiogenic signature as the Indo-Pacific connection is reduced under the low sea level of the glacial periods, we show that under global cooling, the AAIW advances northward into the tropics, which is a consequence of the general slowdown of the thermohaline circulation. Therefore, oceanic mixing at intermediate depth in the eastern tropical Indian intermediate water is modulated by the production rate of the AAIW in the Southern Ocean. Our study provides new evidence for the role that changes in the deep oceanic conditions play in amplifying externally forced climate changes that ultimately lead to drier/moister atmospheric conditions and weaker/stronger monsoons during glacial/interglacial periods over eastern tropical Indian Ocean.

Seascape genomics of common dolphins (Delphinus delphis) reveals adaptive diversity linked to regional and local oceanography

Background

High levels of standing genomic variation in wide-ranging marine species may enhance prospects for their long-term persistence. Patterns of connectivity and adaptation in such species are often thought to be influenced by spatial factors, environmental heterogeneity, and oceanographic and geomorphological features. Population-level studies that analytically integrate genome-wide data with environmental information (i.e., seascape genomics) have the potential to inform the spatial distribution of adaptive diversity in wide-ranging marine species, such as many marine mammals. We assessed genotype-environment associations (GEAs) in 214 common dolphins (Delphinus delphis) along > 3000 km of the southern coast of Australia.

Results

We identified 747 candidate adaptive SNPs out of a filtered panel of 17,327 SNPs, and five putatively locally-adapted populations with high levels of standing genomic variation were disclosed along environmentally heterogeneous coasts. Current velocity, sea surface temperature, salinity, and primary productivity were the key environmental variables associated with genomic variation. These environmental variables are in turn related to three main oceanographic phenomena that are likely affecting the dispersal of common dolphins: (1) regional oceanographic circulation, (2) localised and seasonal upwellings, and (3) seasonal on-shelf circulation in protected coastal habitats. Signals of selection at exonic gene regions suggest that adaptive divergence is related to important metabolic traits.

Conclusion

To the best of our knowledge, this represents the first seascape genomics study for common dolphins (genus Delphinus). Information from the associations between populations and their environment can assist population management in forecasting the adaptive capacity of common dolphins to climate change and other anthropogenic impacts.

Dynamics of the Land–Sea Breeze System and the Surface Current Response in South-West Australia

The land–sea breeze (LSB) system, driven by the thermal contrast between the land and the adjacent ocean is a widely known atmospheric phenomenon, which occurs in coastal regions globally. South-west Australia experiences a persistent and one of the strongest LSB systems globally with maximum wind speeds associated with the LSB system often exceeding 15 ms−1. In this paper, using field measurements and numerical simulations, we examine: (1) the local winds associated with the land–sea breeze with an emphasis on the ocean; and, (2) the response of the surface currents to the diurnal wind forcing. The measurements indicated that the wind speeds decreased between midnight and 0400 and increased rapidly after 1100, reaching maxima >10 ms−1 around 1800) associated with the sea breeze and decreased to midnight. Wind directions were such that they were blowing from south-east (120°) in the morning and changed to almost southerly (~200°) in the afternoon. Decomposition of the wind record to the diurnal and synoptic components indicated that the diurnal component of winds (i.e., LSB) was oriented along the south-west to north-east axis. However, the stronger synoptic winds were from the south-east to south quadrant and in combination with the LSB, the winds consisted of a strong southerly component. We examined the evolution, horizontal extent, and propagation properties of sea breeze fronts for characteristic LSB cycles and the sea breeze cell propagating offshore and inland. The results indicated that the sea breeze cell was initiated in the morning in a small area, close to 33° S, 115.5° E, with a width of ~25 km and expanded onshore, offshore and alongshore. The sea breeze cell expanded faster (30 kmh−1) and farther (120 km) in the offshore direction than in the onshore direction (10 kmh−1 and 30–40 km). Winds during the LSB cycle followed a counterclockwise rotation that was also reflected in the surface currents. The winds and surface currents rotated anticlockwise with the surface currents responding almost instantaneously to changes in wind forcing but were modified by topography. The diurnal surface currents were enhanced due to the resonance between the LSB forcing and the inertial response.

High-Frequency Radar Observations of Surface Circulation Features along the South-Western Australian Coast

A new merged high-frequency radar (HFR) data set collected using SeaSonde and WERA (WEllen RAdar) systems was used to examine the ocean surface circulation at diurnal, seasonal and inter-annual time scales along the south-west coast of Australia (SWWA), between 29°–32° S. Merging was performed after resampling WERA data on the coarser SeaSonde HFR grid and averaging data from the two HFR systems in the area of common overlap. Direct comparisons between WERA and SeaSonde vectors in their overlapping areas provided scalar and vector correlation values in the range Ru = [0.24, 0.76]; Rv = [0.39, 0.83]; ρ = [0.44, 0.75], with mean bias between velocity components in the range [−0.02, 0.28] ms−1, [−0.16, 0.16] ms−1 for the U, V components, respectively. The lower agreement between vectors was obtained in general at the boundaries of the HFR domains, where the combined effects of the bearing errors, geometrical constraints, and the limited angular field of view were predominant. The combined data set allowed for a novel characterization of the dominant features in the region, such as the warmer poleward-flowing Leeuwin Current (LC), the colder Capes Current (CC) and its northward extensions, the presence of sub-mesoscale to mesoscale eddies and their generation and aggregation areas, along with the extent offshore of the inertial-diurnal signal. The contribution of tides was weak within the entire HFR domain (<10% total variance), whilst signatures of significant inertial- and diurnal-period currents were present due to diurnal–inertial resonance. A clear discontinuity in energy and variance distribution occurred at the shelf break, which separates the continental shelf and deeper offshore regions, and defined the core of the LC. Confined between the LC and the coastline, the narrower and colder CC current was a feature during the summer months. Persistent (lifespan greater than 1 day) sub-mesoscale eddies (Rossby number O (1)) were observed at two main regions, north and south of 31.5° S, offshore of the 200 m depth contour. The majority of these eddies had diameters in the range 10–20 km with 50% more counter clockwise rotating (CCW) eddies compared to clockwise (CW) rotating eddies. The northern region was dominated by CCW eddies that were present throughout the year whilst CW eddies were prevalent in the south with lower numbers during the summer months.

Autonomous adaptation to climate-driven change in marine biodiversity in a global marine hotspot

While governments and natural resource managers grapple with how to respond to climatic changes, many marine-dependent individuals, organisations and user-groups in fast-changing regions of the world are already adjusting their behaviour to accommodate these. However, we have little information on the nature of these autonomous adaptations that are being initiated by resource user-groups. The east coast of Tasmania, Australia, is one of the world's fastest warming marine regions with extensive climate-driven changes in biodiversity already observed. We present and compare examples of autonomous adaptations from marine users of the region to provide insights into factors that may have constrained or facilitated the available range of autonomous adaptation options and discuss potential interactions with governmental planned adaptations. We aim to support effective adaptation by identifying the suite of changes that marine users are making largely without government or management intervention, i.e. autonomous adaptations, to better understand these and their potential interactions with formal adaptation strategies.

Oceanography promotes self-recruitment in a planktonic larval disperser

The application of high-resolution genetic data has revealed that oceanographic connectivity in marine species with planktonic larvae can be surprisingly limited, even in the absence of major barriers to dispersal. Australia's southern coast represents a particularly interesting system for studying planktonic larval dispersal, as the hydrodynamic regime of the wide continental shelf has potential to facilitate onshore retention of larvae. We used a seascape genetics approach (the joint analysis of genetic data and oceanographic connectivity simulations) to assess population genetic structure and self-recruitment in a broadcast-spawning marine gastropod that exists as a single meta-population throughout its temperate Australian range. Levels of self-recruitment were surprisingly high, and oceanographic connectivity simulations indicated that this was a result of low-velocity nearshore currents promoting the retention of planktonic larvae in the vicinity of natal sites. Even though the model applied here is comparatively simple and assumes that the dispersal of planktonic larvae is passive, we find that oceanography alone is sufficient to explain the high levels of genetic structure and self-recruitment. Our study contributes to growing evidence that sophisticated larval behaviour is not a prerequisite for larval retention in the nearshore region in planktonic-developing species.

Contrasting patterns of population connectivity between regions in a commercially important mollusc Haliotis rubra: integrating population genetics, genomics and marine LiDAR data

Estimating contemporary genetic structure and population connectivity in marine species is challenging, often compromised by genetic markers that lack adequate sensitivity, and unstructured sampling regimes. We show how these limitations can be overcome via the integration of modern genotyping methods and sampling designs guided by LiDAR and SONAR data sets. Here we explore patterns of gene flow and local genetic structure in a commercially harvested abalone species (Haliotis rubra) from southeastern Australia, where the viability of fishing stocks is believed to be dictated by recruitment from local sources. Using a panel of microsatellite and genomewide SNP markers, we compare allele frequencies across a replicated hierarchical sampling area guided by bathymetric LiDAR imagery. Results indicate high levels of gene flow and no significant genetic structure within or between benthic reef habitats across 1400 km of coastline. These findings differ to those reported for other regions of the fishery indicating that larval supply is likely to be spatially variable, with implications for management and long-term recovery from stock depletion. The study highlights the utility of suitably designed genetic markers and spatially informed sampling strategies for gaining insights into recruitment patterns in benthic marine species, assisting in conservation planning and sustainable management of fisheries.

Decadal-Scale Forecasting of Climate Drivers for Marine Applications

Climate influences marine ecosystems on a range of time scales, from weather-scale (days) through to climate-scale (hundreds of years). Understanding of interannual to decadal climate variability and impacts on marine industries has received less attention. Predictability up to 10 years ahead may come from large-scale climate modes in the ocean that can persist over these time scales. In Australia the key drivers of climate variability affecting the marine environment are the Southern Annular Mode, the Indian Ocean Dipole, the El Niño/Southern Oscillation, and the Interdecadal Pacific Oscillation, each has phases that are associated with different ocean circulation patterns and regional environmental variables. The roles of these drivers are illustrated with three case studies of extreme events-a marine heatwave in Western Australia, a coral bleaching of the Great Barrier Reef, and flooding in Queensland. Statistical and dynamical approaches are described to generate forecasts of climate drivers that can subsequently be translated to useful information for marine end users making decisions at these time scales. Considerable investment is still needed to support decadal forecasting including improvement of ocean-atmosphere models, enhancement of observing systems on all scales to support initiation of forecasting models, collection of important biological data, and integration of forecasts into decision support tools. Collaboration between forecast developers and marine resource sectors-fisheries, aquaculture, tourism, biodiversity management, infrastructure-is needed to support forecast-based tactical and strategic decisions that reduce environmental risk over annual to decadal time scales.

Putting the ‘Indo’ back into the Indo-Pacific: resolving marine phylogeographic gaps

The Indo-Pacific is an extremely large marine realm that unites two oceans via a restricted Coral Triangle corridor, which was historically subjected to lowered sea levels during global glaciation. Although a strong phylogeographic focus on the Central and West Pacific has produced a large body of research, the Indian Ocean has been largely neglected. This may have serious consequences, because the Indian Ocean hosts a large number of marine centres of endemism, yet a large number of nations rely on its marine resources. We examine reasons for this neglect and review what is known about this region and its connectivity to the Indo-West Pacific. We draw attention to the ‘Leeuwin Effect’, a phenomenon where the southward flow of the Leeuwin Current is responsible for transporting larval propagules from the Coral Triangle region down the coast of Western Australia, resulting in broader Indo-West Pacific rather than Indian Ocean affinities. Given challenges in accessing infrastructure and samples, collaboration will inevitably be key to resolving data gaps. We challenge the assumption that the peak of shallow-water marine biodiversity is solely centred in the Coral Triangle, and raise awareness of a seemingly forgotten hypothesis promoting a secondary peak of biodiversity in the western Indian Ocean.

IMOS National Reference Stations: a continental-wide physical, chemical and biological coastal observing system

Sustained observations allow for the tracking of change in oceanography and ecosystems, however, these are rare, particularly for the Southern Hemisphere. To address this in part, the Australian Integrated Marine Observing System (IMOS) implemented a network of nine National Reference Stations (NRS). The network builds on one long-term location, where monthly water sampling has been sustained since the 1940s and two others that commenced in the 1950s. In-situ continuously moored sensors and an enhanced monthly water sampling regime now collect more than 50 data streams. Building on sampling for temperature, salinity and nutrients, the network now observes dissolved oxygen, carbon, turbidity, currents, chlorophyll a and both phytoplankton and zooplankton. Additional parameters for studies of ocean acidification and bio-optics are collected at a sub-set of sites and all data is made freely and publically available. Our preliminary results demonstrate increased utility to observe extreme events, such as marine heat waves and coastal flooding; rare events, such as plankton blooms; and have, for the first time, allowed for consistent continental scale sampling and analysis of coastal zooplankton and phytoplankton communities. Independent water sampling allows for cross validation of the deployed sensors for quality control of data that now continuously tracks daily, seasonal and annual variation. The NRS will provide multi-decadal time series, against which more spatially replicated short-term studies can be referenced, models and remote sensing products validated, and improvements made to our understanding of how large-scale, long-term change and variability in the global ocean are affecting Australia's coastal seas and ecosystems. The NRS network provides an example of how a continental scaled observing systems can be developed to collect observations that integrate across physics, chemistry and biology.

Shared patterns of species turnover between seaweeds and seed plants break down at increasing distances from the sea

We tested for correlations in the degree of spatial similarity between algal and terrestrial plants communities along 5500 km of temperate Australian coastline and whether the strength of correlation weakens with increasing distance from the coast. We identified strong correlations between macroalgal and terrestrial plant communities within the first 100 km from shore, where the strength of these marine–terrestrial correlations indeed weakens with increasing distance inland. As such, our results suggest that marine-driven community homogenization processes decompose with increasing distance from the shore toward inland. We speculate that the proximity to the marine environment produces lower levels of community turnover on land, and this effect decreases progressively farther inland. Our analysis suggests underlying ecological and evolutionary processes that give rise to continental-scale biogeographic influence from sea to land.

Marine plastic pollution in waters around Australia: characteristics, concentrations, and pathways

Plastics represent the vast majority of human-made debris present in the oceans. However, their characteristics, accumulation zones, and transport pathways remain poorly assessed. We characterised and estimated the concentration of marine plastics in waters around Australia using surface net tows, and inferred their potential pathways using particle-tracking models and real drifter trajectories. The 839 marine plastics recorded were predominantly small fragments (“microplastics”, median length = 2.8 mm, mean length = 4.9 mm) resulting from the breakdown of larger objects made of polyethylene and polypropylene (e.g. packaging and fishing items). Mean sea surface plastic concentration was 4256.4 pieces km⁻², and after incorporating the effect of vertical wind mixing, this value increased to 8966.3 pieces km⁻². These plastics appear to be associated with a wide range of ocean currents that connect the sampled sites to their international and domestic sources, including populated areas of Australia's east coast. This study shows that plastic contamination levels in surface waters of Australia are similar to those in the Caribbean Sea and Gulf of Maine, but considerably lower than those found in the subtropical gyres and Mediterranean Sea. Microplastics such as the ones described here have the potential to affect organisms ranging from megafauna to small fish and zooplankton.

Ocean currents influence the genetic structure of an intertidal mollusc in southeastern Australia - implications for predicting the movement of passive dispersers across a marine biogeographic barrier

Major disjunctions among marine communities in southeastern Australia have been well documented, although explanations for biogeographic structuring remain uncertain. Converging ocean currents, environmental gradients, and habitat discontinuities have been hypothesized as likely drivers of structuring in many species, although the extent to which species are affected appears largely dependent on specific life histories and ecologies. Understanding these relationships is critical to the management of native and invasive species, and the preservation of evolutionary processes that shape biodiversity in this region. In this study we test the direct influence of ocean currents on the genetic structure of a passive disperser across a major biogeographic barrier. Donax deltoides (Veneroida: Donacidae) is an intertidal, soft-sediment mollusc and an ideal surrogate for testing this relationship, given its lack of habitat constraints in this region, and its immense dispersal potential driven by year-long spawning and long-lived planktonic larvae. We assessed allele frequencies at 10 polymorphic microsatellite loci across 11 sample locations spanning the barrier region and identified genetic structure consistent with the major ocean currents of southeastern Australia. Analysis of mitochondrial DNA sequence data indicated no evidence of genetic structuring, but signatures of a species range expansion corresponding with historical inundations of the Bassian Isthmus. Our results indicate that ocean currents are likely to be the most influential factor affecting the genetic structure of D. deltoides and a likely physical barrier for passive dispersing marine fauna generally in southeastern Australia.

Glacial oceanographic contrasts explain phylogeography of Australian bull kelp

The evolutionary effects of Southern Hemisphere Pleistocene oceanographic conditions - marked by fluctuations in sea levels and water temperatures, and redirected currents - are poorly understood. The southeastern tip of Australia presents an intriguing model system for studying the biological impacts of palaeoceanography. In particular, contrasting oceanographic conditions that existed on eastern vs. western sides of the Bassian Isthmus during Pleistocene glacial periods allow for natural comparisons between putative refugial vs. re-invading populations. Whereas many western Tasmanian marine taxa were likely eliminated by cold subantarctic water during the last glacial period, eastern Tasmanian populations would have persisted in relatively warm temperatures mediated by the ongoing influence of the East Australian Current (EAC). Here we test for the effects of contrasting palaeoceanographic conditions on endemic bull kelp, Durvillaea potatorum, using DNA sequence analysis (COI; rbcL) of more than 100 individuals from 14 localities in southeastern Australia. Phylogenetic reconstructions reveal a deep (maximum divergence 4.7%) genetic split within D. potatorum, corresponding to the 'eastern' and 'western' geographical regions delimited by the Bassian Isthmus, a vicariant barrier during low Pleistocene sea levels. Concordant with the western region's cold glacial conditions, samples from western Tasmania and western Victoria are genetically monomorphic, suggesting postglacial expansion from a mainland refugium. Eastern samples, in contrast, comprise distinct regional haplogroups, suggesting the species persisted in eastern Tasmania throughout recent glacial periods. The deep east-west divergence seems consistent with earlier reports of morphological differences between 'western' and 'eastern' D. potatorum, and it seems likely that these forms represent reproductively isolated species.