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Chan IZW, Stevens M, Todd PA. pat‐geom
: A software package for the analysis of animal patterns. Methods Ecol Evol 2019. [DOI: 10.1111/2041-210x.13131] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ian Z. W. Chan
- Experimental Marine Ecology LaboratoryDepartment of Biological SciencesNational University of Singapore Singapore
| | - Martin Stevens
- Centre for Ecology and ConservationUniversity of Exeter Penryn Cornwall UK
| | - Peter A. Todd
- Experimental Marine Ecology LaboratoryDepartment of Biological SciencesNational University of Singapore Singapore
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Sitzia T, Dainese M, Krüsi BO, McCollin D. Landscape metrics as functional traits in plants: perspectives from a glacier foreland. PeerJ 2017; 5:e3552. [PMID: 28785514 PMCID: PMC5541930 DOI: 10.7717/peerj.3552] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2016] [Accepted: 06/16/2017] [Indexed: 11/20/2022] Open
Abstract
Spatial patterns of vegetation arise from an interplay of functional traits, environmental characteristics and chance. The retreat of glaciers offers exposed substrates which are colonised by plants forming distinct patchy patterns. The aim of this study was to unravel whether patch-level landscape metrics of plants can be treated as functional traits. We sampled 46 plots, each 1 m × 1 m, distributed along a restricted range of terrain age and topsoil texture on the foreland of the Nardis glacier, located in the South-Eastern Alps, Italy. Nine quantitative functional traits were selected for 16 of the plant species present, and seven landscape metrics were measured to describe the spatial arrangement of the plant species' patches on the study plots, at a resolution of 1 cm × 1 cm. We studied the relationships among plant communities, landscape metrics, terrain age and topsoil texture. RLQ-analysis was used to examine trait-spatial configuration relationships. To assess the effect of terrain age and topsoil texture variation on trait performance, we applied a partial-RLQ analysis approach. Finally, we used the fourth-corner statistic to quantify and test relationships between traits, landscape metrics and RLQ axes. Floristically-defined relevé clusters differed significantly with regard to several landscape metrics. Diversity in patch types and size increased and patch size decreased with increasing canopy height, leaf size and weight. Moreover, more compact patch shapes were correlated with an increased capacity for the conservation of nutrients in leaves. Neither plant species composition nor any of the landscape metrics were found to differ amongst the three classes of terrain age or topsoil texture. We conclude that patch-level landscape metrics of plants can be treated as species-specific functional traits. We recommend that existing databases of functional traits should incorporate these type of data.
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Affiliation(s)
- Tommaso Sitzia
- Department of Land, Environment, Agriculture and Forestry, Università degli Studi di Padova, Legnaro (PD), Italy.,Landscape & Biodiversity Research Group, The University of Northampton, Northampton, United Kingdom
| | - Matteo Dainese
- Department of Land, Environment, Agriculture and Forestry, Università degli Studi di Padova, Legnaro (PD), Italy.,Department of Animal Ecology and Tropical Biology, Universität Würzburg, Würzburg, Germany
| | - Bertil O Krüsi
- School of Life Sciences and Facility Management, Zürich University of Applied Science, Wädenswil, Switzerland
| | - Duncan McCollin
- Landscape & Biodiversity Research Group, The University of Northampton, Northampton, United Kingdom
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A New Health Assessment Index of Tunnel Lining Based on the Digital Inspection of Surface Cracks. APPLIED SCIENCES-BASEL 2017. [DOI: 10.3390/app7050507] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Ménard A, Marceau DJ. Exploration of Spatial Scale Sensitivity in Geographic Cellular Automata. ACTA ACUST UNITED AC 2016. [DOI: 10.1068/b31163] [Citation(s) in RCA: 62] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
Cellular automata (CA) are individual-based models in which states, time, and space are discrete. Spatiotemporal dynamics emerge from the simple and local interactions of the cells. When using CA in a geographic context, nontrivial questions have to be answered about the choice of spatial scale, namely cell size and neighbourhood configuration. However, the spatial scale decisions involved in the elaboration of geographic cellular automata (GCA) are often made arbitrarily or in relation to data availability. The objective of this study is to evaluate the sensitivity of GCA to spatial scale. A stochastic GCA was built to model land-cover change in the Maskoutains region (Quebec, Canada). The transition rules were empirically derived from two Landsat-TM (30 m resolution) images taken in 1999 and 2002 that have been resampled to four resolutions (100, 200, 500, 1000 m). Six different neighbourhood configurations were considered (Moore, Von Neumann, and circular approximations of 2, 3, 4, and 5 cell radii). Simulations were performed for each of the thirty spatial scale scenarios. Results show that spatial scale has a considerable impact on simulation dynamics in terms of both land-cover area and spatial structure. The spatial scale domains present in the results reveal the nonlinear relationships that link the spatial scale components to the simulation results.
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Affiliation(s)
- André Ménard
- Geocomputing Laboratory, Department of Geography, University of Montreal C.P. 6128, Succ. Centre-Ville, Montréal, Québec H3C 3J7, Canada
| | - Danielle J Marceau
- Geocomputing Laboratory, Department of Geography, University of Montreal C.P. 6128, Succ. Centre-Ville, Montréal, Québec H3C 3J7, Canada
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Juliani AW, Bies AJ, Boydston CR, Taylor RP, Sereno ME. Navigation performance in virtual environments varies with fractal dimension of landscape. JOURNAL OF ENVIRONMENTAL PSYCHOLOGY 2016; 47:155-165. [PMID: 27346905 PMCID: PMC4918639 DOI: 10.1016/j.jenvp.2016.05.011] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Fractal geometry has been used to describe natural and built environments, but has yet to be studied in navigational research. In order to establish a relationship between the fractal dimension (D) of a natural environment and humans' ability to navigate such spaces, we conducted two experiments using virtual environments that simulate the fractal properties of nature. In Experiment 1, participants completed a goal-driven search task either with or without a map in landscapes that varied in D. In Experiment 2, participants completed a map-reading and location-judgment task in separate sets of fractal landscapes. In both experiments, task performance was highest at the low-to-mid range of D, which was previously reported as most preferred and discriminable in studies of fractal aesthetics and discrimination, respectively, supporting a theory of visual fluency. The applicability of these findings to architecture, urban planning, and the general design of constructed spaces is discussed.
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Affiliation(s)
- Arthur W. Juliani
- Department of Psychology, University of Oregon, Eugene OR 97403, USA
| | - Alexander J. Bies
- Department of Psychology, University of Oregon, Eugene OR 97403, USA
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Huth G, Haegeman B, Pitard E, Munoz F. Long-Distance Rescue and Slow Extinction Dynamics Govern Multiscale Metapopulations. Am Nat 2015; 186:460-9. [DOI: 10.1086/682947] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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Perez L, Dragicevic S. Landscape-level simulation of forest insect disturbance: Coupling swarm intelligent agents with GIS-based cellular automata model. Ecol Modell 2012. [DOI: 10.1016/j.ecolmodel.2012.01.020] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Multifractal pattern and process during a recent period of forest expansion in a temperate mountainous region of China. ECOL INFORM 2011. [DOI: 10.1016/j.ecoinf.2011.08.005] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Tiraihi A, Tiraihi M, Tiraihi T. Self-organization of developing embryo using scale-invariant approach. Theor Biol Med Model 2011; 8:17. [PMID: 21635789 PMCID: PMC3126770 DOI: 10.1186/1742-4682-8-17] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2010] [Accepted: 06/03/2011] [Indexed: 01/26/2023] Open
Abstract
BACKGROUND Self-organization is a fundamental feature of living organisms at all hierarchical levels from molecule to organ. It has also been documented in developing embryos. METHODS In this study, a scale-invariant power law (SIPL) method has been used to study self-organization in developing embryos. The SIPL coefficient was calculated using a centro-axial skew symmetrical matrix (CSSM) generated by entering the components of the Cartesian coordinates; for each component, one CSSM was generated. A basic square matrix (BSM) was constructed and the determinant was calculated in order to estimate the SIPL coefficient. This was applied to developing C. elegans during early stages of embryogenesis. The power law property of the method was evaluated using the straight line and Koch curve and the results were consistent with fractal dimensions (fd). Diffusion-limited aggregation (DLA) was used to validate the SIPL method. RESULTS AND CONCLUSION The fractal dimensions of both the straight line and Koch curve showed consistency with the SIPL coefficients, which indicated the power law behavior of the SIPL method. The results showed that the ABp sublineage had a higher SIPL coefficient than EMS, indicating that ABp is more organized than EMS. The fd determined using DLA was higher in ABp than in EMS and its value was consistent with type 1 cluster formation, while that in EMS was consistent with type 2.
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Affiliation(s)
- Ali Tiraihi
- College of Computer and Electrical Engineering, Shaheed Behshti University, Tehran, Iran
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Gallien L, Münkemüller T, Albert CH, Boulangeat I, Thuiller W. Predicting potential distributions of invasive species: where to go from here? DIVERS DISTRIB 2010. [DOI: 10.1111/j.1472-4642.2010.00652.x] [Citation(s) in RCA: 249] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
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Halley JD, Winkler DA. Critical-like self-organization and natural selection: Two facets of a single evolutionary process? Biosystems 2008; 92:148-58. [DOI: 10.1016/j.biosystems.2008.01.005] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2007] [Revised: 01/18/2008] [Accepted: 01/21/2008] [Indexed: 11/16/2022]
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Song W, Zheng H, Wang J, Ma J, Satoh K. Weather-driven model indicative of spatiotemporal power laws. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2007; 75:016109. [PMID: 17358226 DOI: 10.1103/physreve.75.016109] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2006] [Indexed: 05/14/2023]
Abstract
In the traditional Drossel-Schwabl forest fire model (DS model), the frequency distributions of fire size and fire interval follow a power law and an exponential law, respectively. However, it is found that the frequency-interval distribution of actual forest fires is not exponential, but a power law with periodical fluctuations which may be caused by the daily cycle of weather parameters. Therefore, a weather driven forest fire model (WD model) is built considering actual hourly weather records, with which the fire igniting probability is calculated. The simulation results indicate that the frequency-interval distribution of the WD model agrees with that of actual forest fire data and, at the same time, the frequency-size distributions of the WD and the DS models are in accordance with each other. In the further analysis of the temporal property of weather data, it is found that the change of weather data also exhibits a power-law relation with periodic fluctuations, implying that the external driving from weather parameters is the essential reason for the power-law distribution of fire intervals. The results suggest that natural systems may be coupled with each other and that the decoupling of systems is important to identifying system characteristics.
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Affiliation(s)
- Weiguo Song
- State Key Laboratory of Fire Science, University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China.
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Lischke H, Zimmermann NE, Bolliger J, Rickebusch S, Löffler TJ. TreeMig: A forest-landscape model for simulating spatio-temporal patterns from stand to landscape scale. Ecol Modell 2006. [DOI: 10.1016/j.ecolmodel.2005.11.046] [Citation(s) in RCA: 153] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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BECK JAN, KITCHING IANJ, LINSENMAIR KEDUARD. Wallace’s line revisited: has vicariance or dispersal shaped the distribution of Malesian hawkmoths (Lepidoptera: Sphingidae)? Biol J Linn Soc Lond 2006. [DOI: 10.1111/j.1095-8312.2006.00686.x] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Millington JDA, Perry GLW, Malamud BD. Models, data and mechanisms: quantifying wildfire regimes. ACTA ACUST UNITED AC 2006. [DOI: 10.1144/gsl.sp.2006.261.01.12] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
AbstractThe quantification of wildfire regimes, especially the relationship between the frequency with which events occur and their size, is of particular interest to both ecologists and wildfire managers. Recent studies in cellular automata (CA) and the fractal nature of the frequency-area relationship they produce has led some authors to ask whether the power-law frequency-area statistics seen in the CA might also be present in empirical wildfire data. Here, we outline the history of the debate regarding the statistical wildfire frequency-area models suggested by the CA and their confrontation with empirical data. In particular, the extent to which the utility of these approaches is dependent on being placed in the context of self-organized criticality (SOC) is examined. We also consider some of the other heavy-tailed statistical distributions used to describe these data. Taking a broadly ecological perspective we suggest that this debate needs to take more interest in the mechanisms underlying the observed power-law (or other) statistics. From this perspective, future studies utilizing the techniques associated with CA and statistical physics will be better able to contribute to the understanding of ecological processes and systems.
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Affiliation(s)
- James D. A. Millington
- Environmental Monitoring and Modelling Research Group, Department of Geography
King’s College London, Strand, London WC2R 2LS, UK
| | - George L. W. Perry
- School of Geography and Environmental Science, University of Auckland
Private Bag 92019, Auckland, New Zealand
| | - Bruce D. Malamud
- Environmental Monitoring and Modelling Research Group, Department of Geography
King’s College London, Strand, London WC2R 2LS, UK
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Modeling tree species migration in the Alps during the Holocene: What creates complexity? ECOLOGICAL COMPLEXITY 2005. [DOI: 10.1016/j.ecocom.2004.11.009] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Bolliger J, Lischke H, Green DG. Simulating the spatial and temporal dynamics of landscapes using generic and complex models. ECOLOGICAL COMPLEXITY 2005. [DOI: 10.1016/j.ecocom.2004.11.005] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Bolliger J. Simulating complex landscapes with a generic model: Sensitivity to qualitative and quantitative classifications. ECOLOGICAL COMPLEXITY 2005. [DOI: 10.1016/j.ecocom.2004.11.008] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Malamud BD, Millington JDA, Perry GLW. Characterizing wildfire regimes in the United States. Proc Natl Acad Sci U S A 2005; 102:4694-9. [PMID: 15781868 PMCID: PMC555719 DOI: 10.1073/pnas.0500880102] [Citation(s) in RCA: 180] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Wildfires statistics for the conterminous United States (U.S.) are examined in a spatially and temporally explicit manner. We use a high-resolution data set consisting of 88,916 U.S. Department of Agriculture Forest Service wildfires over the time period 1970-2000 and consider wildfire occurrence as a function of ecoregion (land units classified by climate, vegetation, and topography), ignition source (anthropogenic vs. lightning), and decade. For the conterminous U.S., we (i) find that wildfires exhibit robust frequency-area power-law behavior in 18 different ecoregions; (ii) use normalized power-law exponents to compare the scaling of wildfire-burned areas between ecoregions, finding a systematic change from east to west; (iii) find that wildfires in the eastern third of the U.S. have higher power-law exponents for anthropogenic vs. lightning ignition sources; and (iv) calculate recurrence intervals for wildfires of a given burned area or larger for each ecoregion, allowing for the classification of wildfire regimes for probabilistic hazard estimation in the same vein as is now used for earthquakes.
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Affiliation(s)
- Bruce D Malamud
- Environmental Monitoring and Modelling Research Group, Department of Geography, King's College London, Strand, London WC2R 2LS, UK.
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With KA, King AW. The effect of landscape structure on community self-organization and critical biodiversity. Ecol Modell 2004. [DOI: 10.1016/j.ecolmodel.2004.05.014] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Jenerette GD, Wu J. Interactions of ecosystem processes with spatial heterogeneity in the puzzle of nitrogen limitation. OIKOS 2004. [DOI: 10.1111/j.0030-1299.2004.13325.x] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Somodi I, Virágh K, Aszalós R. The effect of the abandonment of grazing on the mosaic of vegetation patches in a temperate grassland area in Hungary. ECOLOGICAL COMPLEXITY 2004. [DOI: 10.1016/j.ecocom.2004.03.001] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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