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Schott RK, Bell RC, Loew ER, Thomas KN, Gower DJ, Streicher JW, Fujita MK. Transcriptomic evidence for visual adaptation during the aquatic to terrestrial metamorphosis in leopard frogs. BMC Biol 2022; 20:138. [PMID: 35761245 PMCID: PMC9238225 DOI: 10.1186/s12915-022-01341-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Accepted: 05/30/2022] [Indexed: 12/29/2022] Open
Abstract
BACKGROUND Differences in morphology, ecology, and behavior through ontogeny can result in opposing selective pressures at different life stages. Most animals, however, transition through two or more distinct phenotypic phases, which is hypothesized to allow each life stage to adapt more freely to its ecological niche. How this applies to sensory systems, and in particular how sensory systems adapt across life stages at the molecular level, is not well understood. Here, we used whole-eye transcriptomes to investigate differences in gene expression between tadpole and juvenile southern leopard frogs (Lithobates sphenocephalus), which rely on vision in aquatic and terrestrial light environments, respectively. Because visual physiology changes with light levels, we also tested the effect of light and dark exposure. RESULTS We found 42% of genes were differentially expressed in the eyes of tadpoles versus juveniles and 5% for light/dark exposure. Analyses targeting a curated subset of visual genes revealed significant differential expression of genes that control aspects of visual function and development, including spectral sensitivity and lens composition. Finally, microspectrophotometry of photoreceptors confirmed shifts in spectral sensitivity predicted by the expression results, consistent with adaptation to distinct light environments. CONCLUSIONS Overall, we identified extensive expression-level differences in the eyes of tadpoles and juveniles related to observed morphological and physiological changes through metamorphosis and corresponding adaptive shifts to improve vision in the distinct aquatic and terrestrial light environments these frogs inhabit during their life cycle. More broadly, these results suggest that decoupling of gene expression can mediate the opposing selection pressures experienced by organisms with complex life cycles that inhabit different environmental conditions throughout ontogeny.
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Affiliation(s)
- Ryan K Schott
- Department of Biology, York University, Toronto, Ontario, Canada.
- Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington DC, USA.
| | - Rayna C Bell
- Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington DC, USA
- Department of Herpetology, California Academy of Sciences, San Francisco, CA, USA
| | - Ellis R Loew
- Department of Biomedical Sciences, Cornell University College of Veterinary Medicine, Ithaca, NY, USA
| | - Kate N Thomas
- Department of Life Sciences, The Natural History Museum, London, UK
| | - David J Gower
- Department of Life Sciences, The Natural History Museum, London, UK
| | | | - Matthew K Fujita
- Department of Biology, Amphibian and Reptile Diversity Research Center, The University of Texas at Arlington, Arlington, TX, USA
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Fouilloux CA, Yovanovich CAM, Rojas B. Tadpole Responses to Environments With Limited Visibility: What We (Don’t) Know and Perspectives for a Sharper Future. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2021.766725] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Amphibian larvae typically inhabit relatively shallow freshwater environments, and within these boundaries there is considerable diversity in the structure of the habitats exploited by different species. This diversity in habitat structure is usually taken into account in relation to aspects such as locomotion and feeding, and plays a fundamental role in the classification of tadpoles into ecomorphological guilds. However, its impact in shaping the sensory worlds of different species is rarely addressed, including the optical qualities of each of these types of water bodies and the challenges and limitations that they impose on the repertoire of visual abilities available for a typical vertebrate eye. In this Perspective article, we identify gaps in knowledge on (1) the role of turbidity and light-limited environments in shaping the larval visual system; and (2) the possible behavioral and phenotypic responses of larvae to such environments. We also identify relevant unaddressed study systems paying special attention to phytotelmata, whose small size allows for extensive quantification and manipulation providing a rich and relatively unexplored research model. Furthermore, we generate hypotheses ranging from proximate shifts (i.e., red-shifted spectral sensitivity peaks driven by deviations in chromophore ratios) to ultimate changes in tadpole behavior and phenotype, such as reduced foraging efficiency and the loss of antipredator signaling. Overall, amphibians provide an exciting opportunity to understand adaptations to visually limited environments, and this framework will provide novel experimental considerations and interpretations to kickstart future research based on understanding the evolution and diversity of strategies used to cope with limited visibility.
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Donner K, Yovanovich CAM. A frog's eye view: Foundational revelations and future promises. Semin Cell Dev Biol 2020; 106:72-85. [PMID: 32466970 DOI: 10.1016/j.semcdb.2020.05.011] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2020] [Revised: 05/13/2020] [Accepted: 05/13/2020] [Indexed: 12/16/2022]
Abstract
From the mid-19th century until the 1980's, frogs and toads provided important research models for many fundamental questions in visual neuroscience. In the present century, they have been largely neglected. Yet they are animals with highly developed vision, a complex retina built on the basic vertebrate plan, an accessible brain, and an experimentally useful behavioural repertoire. They also offer a rich diversity of species and life histories on a reasonably restricted physiological and evolutionary background. We suggest that important insights may be gained from revisiting classical questions in anurans with state-of-the-art methods. At the input to the system, this especially concerns the molecular evolution of visual pigments and photoreceptors, at the output, the relation between retinal signals, brain processing and behavioural decision-making.
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Affiliation(s)
- Kristian Donner
- Molecular and Integrative Biosciences Research Program, Faculty of Biological and Environmental Sciences, University of Helsinki, Finland; PB 65 (Viikinkaari 1), 00014, University of Helsinki, Finland.
| | - Carola A M Yovanovich
- Department of Zoology, Institute of Biosciences, University of São Paulo, Brazil; Rua do Matão, Trav. 14, N°101, São Paulo, SP, 05508-090, Brazil.
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Temple SE, Plate EM, Ramsden S, Haimberger TJ, Roth WM, Hawryshyn CW. Seasonal cycle in vitamin A1/A2-based visual pigment composition during the life history of coho salmon (Oncorhynchus kisutch). J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2005; 192:301-13. [PMID: 16292551 DOI: 10.1007/s00359-005-0068-3] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2005] [Revised: 09/27/2005] [Accepted: 10/08/2005] [Indexed: 10/25/2022]
Abstract
Microspectrophotometry of rod photoreceptors was used to follow variations in visual pigment vitamin A1/A2 ratio at various life history stages in coho salmon. Coho parr shifted their A1/A2 ratio seasonally with A2 increasing during winter and decreasing in summer. The cyclical pattern was statistically examined by a least-squares cosine model, fit to the 12-month data sets collected from different populations. A1/A2 ratio varied with temperature and day length. In 1+ (>12 month old) parr the A2 to A1 shift in spring coincided with smoltification, a metamorphic transition preceding seaward migration in salmonids. The coincidence of the shift from A2 to A1 with both the spring increase in temperature and day length, and with the timing of seaward migration presented a challenge for interpretation. Our data show a shift in A1/A2 ratio correlated with season, in both 0+ (<12 months old) coho parr that remained in fresh water for another year and in oceanic juvenile coho. These findings support the hypothesis that the A1/A2 pigment pair system in coho is an adaptation to seasonal variations in environmental variables rather than to a change associated with migration or metamorphosis.
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Affiliation(s)
- S E Temple
- Department of Biology, University of Victoria, Victoria, BC, Canada
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Zeiger J, Goldsmith TH. Packaging of rhodopsin and porphyropsin in the compound eye of the crayfish. Vis Neurosci 1993; 10:193-202. [PMID: 8485084 DOI: 10.1017/s0952523800003606] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
The distribution of 3-dehydroretinal (Ral2) in dorsal, middle, and ventral slices of eyes of the crayfish Procambarus clarkii was examined by HPLC. No pronounced differences were found. Similar results were obtained when the eyes were cut into anterior, intermediate, and posterior portions. Dichroic difference spectra were measured in single halves of microvillar layers of isolated rhabdoms and the proportions of rhodopsin (P1) and porphyropsin (P2) estimated by comparison with computer-generated mixtures of these pigments, whose spectra are known from previous work. The fraction of visual pigment that is porphyropsin appears to be uniform throughout individual retinular cells and among the retinular cells of individual rhabdoms, but various substantially among different rhabdoms from the same eye. The interommatidial variation in the amount of P2 greatly exceeds the gross regional variation in Ral2. This means there is an intermingling of ommatidia with different levels of P2. The variability in P2 among ommatidia is not likely to have important implications for the vision of the crayfish but suggests that in the metabolism of retinoids, individual ommatidia are quasi-independent metabolic units. The results are compatible with a single opsin for both crayfish rhodopsin and porphyropsin.
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Affiliation(s)
- J Zeiger
- Department of Biology, Yale University, New Haven, CT 06511-8112
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Abstract
Outer segment membrane current was recorded from single rod photoreceptors of Taylor-Kollros State III and Stage XXIII tadpoles. Response-intensity relations and kinetics of the photocurrent were similar to those of audit amphibian photoreceptors, suggesting that phototransduction is quantitatively similar in developing rods and adult rods. Maximum response amplitude was about 1/3 that of adult rods, probably because of the shorter length of the outer segment in tadpoles (20 vs 50 micrometers).
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Makino M, Nagai K, Suzuki T. Seasonal variation of the vitamin A2-based visual pigment in the retina of adult bullfrog, Rana catesbeiana. Vision Res 1983; 23:199-204. [PMID: 6603056 DOI: 10.1016/0042-6989(83)90143-8] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
Visual pigment composition was determined by HPLC analysis over a one-year period in the adult bullfrog (Rana catesbeiana). In Japan, the vitamin A2-based pigment was only 5% of the total visual pigment from the middle of July to October. The vitamin A2-based pigment increased in November and reached a maximum of 32-36% between January and June. This seasonal variation may relate to the average of outdoor temperature rather than the daylight hours. The amount of vitamin A2-based pigment began to increase when the average temperature became lower than 20 degrees C and it decreased rapidly as the average temperature was higher than 20 degrees C.
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Tsin AT, Beatty DD. Scotopic visual pigment composition in the retinas and vitamins A in the pigment epithelium of the goldfish. Exp Eye Res 1979; 29:15-26. [PMID: 510424 DOI: 10.1016/0014-4835(79)90163-5] [Citation(s) in RCA: 40] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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Bridges CD, Hollyfield JG, Besharse JC, Rayborn ME. Visual pigment loss after light-induced shedding of rod outer segments. Exp Eye Res 1976; 23:637-41. [PMID: 1087246 DOI: 10.1016/0014-4835(76)90222-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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Bridges CD. Storage, distribution and utilization of vitamins A in the eyes of adult amphibians and their tadpoles. Vision Res 1975; 15:1311-23. [PMID: 1210015 DOI: 10.1016/0042-6989(75)90183-2] [Citation(s) in RCA: 62] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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Crim JW. Prolactin-thyroxine antagonism and the metamorphosis of visual pigments in Rana catesbeiana tadpoles. THE JOURNAL OF EXPERIMENTAL ZOOLOGY 1975; 192:355-62. [PMID: 1079855 DOI: 10.1002/jez.1401920309] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
The relationship between prolactin-thyroxin antagonism and the metamorphosis of visual pigments in larval amphibians has been investigated using bullfrog (Rana catesbeiana) tadpoles. Althought prolactin-thyroxine antagonism is demonstrable by morphological criteria, ovineprolactin does not appear to anatagonize thyroxine-induced rhodopsin synthesis. The hypothesisis offered that prolactin-thyroxine antagonism is the result of differential gene activities which are opposite in their physiological effects.
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Bridges CD. Spectral sensitivity of the system controlling visual pigment composition in tadpole eyes. Vision Res 1974; 14:929-35. [PMID: 4432390 DOI: 10.1016/0042-6989(74)90159-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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Abstract
Visual pigments are embedded in the disc membranes of the outer segments of vertebrate rods and cones and in the microvilli of invertebrate visual cells. The pigment molecule in both is a most fascinating aggregate of known (the ubiquitous II-cisisomer of vitamin A1or A2-aldehyde = retinal1or2; Hubbard & Wald, 1952) covalently bonded to the unknown (a protein termed opsin) (Anderson, Hoffman & Hall, 1971). This conjugated molecule is called rhodopsin or dehydrorhodopsin (porphryopsin) when the prosthetic portion is retinall or 2 respectively. So sensitive is this sterically hindered, bent and twisted molecule to light that absorption of one photon can initiate its isomerization to the alltransform. This conformational change is but one (but the best known) of the factors leading to receptor membrane changes ushering in the visual impulse.
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Crescitelli F. The Visual Cells and Visual Pigments of the Vertebrate Eye. PHOTOCHEMISTRY OF VISION 1972. [DOI: 10.1007/978-3-642-65066-6_8] [Citation(s) in RCA: 51] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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Abstract
Though it had been supposed earlier that the bullfrog undergoes a virtually complete metamorphosis of visual systems from vitamin A(2) and porphyropsin in the tadpole to vitamin A(1) and rhodopsin in the adult, the present observations show that the retina of the adult frog may contain as much as 30-40% porphyropsin, all of it segregated in the dorsal zone. The most dorsal quarter of the adult retina may contain 81-89% porphyropsin mixed with a minor amount of rhodopsin; the ventral half contains only rhodopsin. Further, the dorsal zone contains a two to three times higher concentration of visual pigments than the ventral retina. The pigment epithelium underlying the retina contains a corresponding distribution of vitamins A(1) and A(2), predominantly vitamin A(2) in the dorsal pigment epithelium, exclusively vitamin A(1) in the ventral zone. The retina accepts whatever vitamin A the pigment epithelium provides it with, and turns it into the corresponding visual pigment. Thus, a piece of light-adapted dorsal retina laid back on ventral pigment epithelium regenerates rhodopsin, whereas a piece of light-adapted ventral retina laid back on dorsal pigment epithelium regenerates predominantly porphyropsin. Vitamin A(2) must be made from vitamin A(1), by dehydrogenation at the 3,4-bond in the ring. This conversion must occur in the pigment epithelium, presumably through the action of a vitamin A-3,4-dehydrogenase. The essential change at metamorphosis is to make much less of this dehydrogenase, and to sequester it in the dorsal pigment epithelium. Some adult bullfrogs, perhaps characteristically taken in the summer, contain very little porphyropsin-only perhaps 5%-still sequestered in the dorsal retina. The gradient of light over the retinal surface has little if any effect on this distribution. The greater density of visual pigments in the dorsal retina, and perhaps also-although this is less clear-the presence of porphyropsin in this zone, has some ecological importance in increasing the retinal sensitivity to the dimmer and, on occasion, redder light received from below.
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Bridges CD, Yoshikami S. The rhodopsin-porphyropsin system in freshwater fishes. 1. Effects of age and photic environment. Vision Res 1970; 10:1315-32. [PMID: 5516534 DOI: 10.1016/0042-6989(70)90084-2] [Citation(s) in RCA: 50] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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