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Krishnamoorthi A, Salom D, Wu A, Palczewski K, Rentzepis PM. Ultrafast transient absorption spectra and kinetics of human blue cone visual pigment at room temperature. Proc Natl Acad Sci U S A 2024; 121:e2414037121. [PMID: 39356673 PMCID: PMC11474067 DOI: 10.1073/pnas.2414037121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2024] [Accepted: 09/01/2024] [Indexed: 10/04/2024] Open
Abstract
The ultrafast photochemical reaction mechanism, transient spectra, and transition kinetics of the human blue cone visual pigment have been recorded at room temperature. Ultrafast time-resolved absorption spectroscopy revealed the progressive formation and decay of several metastable photo-intermediates, corresponding to the Batho to Meta-II photo-intermediates previously observed with bovine rhodopsin and human green cone opsin, on the picosecond to millisecond timescales following pulsed excitation. The experimental data reveal several interesting similarities and differences between the photobleaching sequences of bovine rhodopsin, human green cone opsin, and human blue cone opsin. While Meta-II formation kinetics are comparable between bovine rhodopsin and blue cone opsin, the transition kinetics of earlier photo-intermediates and qualitative characteristics of the Meta-I to Meta-II transition are more similar for blue cone opsin and green cone opsin. Additionally, the blue cone photo-intermediate spectra exhibit a high degree of overlap with uniquely small spectral shifts. The observed variation in Meta-II formation kinetics between rod and cone visual pigments is explained based on key structural differences.
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Affiliation(s)
- Arjun Krishnamoorthi
- Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX77843
| | - David Salom
- Department of Ophthalmology, Gavin Herbert Eye Institute, University of California Irvine, Irvine, CA92697
- Department of Ophthalmology, School of Medicine, University of California Irvine, Irvine, CA92697
| | - Arum Wu
- Department of Ophthalmology, Gavin Herbert Eye Institute, University of California Irvine, Irvine, CA92697
- Department of Ophthalmology, School of Medicine, University of California Irvine, Irvine, CA92697
| | - Krzysztof Palczewski
- Department of Ophthalmology, Gavin Herbert Eye Institute, University of California Irvine, Irvine, CA92697
- Department of Ophthalmology, School of Medicine, University of California Irvine, Irvine, CA92697
- Department of Chemistry, University of California Irvine, Irvine, CA92697
- Department of Physiology and Biophysics, University of California Irvine, Irvine, CA92697
- Department of Molecular Biology and Biochemistry, University of California Irvine, Irvine, CA92697
| | - Peter M. Rentzepis
- Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX77843
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Krishnamoorthi A, Khosh Abady K, Dhankhar D, Rentzepis PM. Ultrafast Transient Absorption Spectra and Kinetics of Rod and Cone Visual Pigments. Molecules 2023; 28:5829. [PMID: 37570798 PMCID: PMC10421382 DOI: 10.3390/molecules28155829] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Revised: 07/28/2023] [Accepted: 07/31/2023] [Indexed: 08/13/2023] Open
Abstract
Rods and cones are the photoreceptor cells containing the visual pigment proteins that initiate visual phototransduction following the absorption of a photon. Photon absorption induces the photochemical transformation of a visual pigment, which results in the sequential formation of distinct photo-intermediate species on the femtosecond to millisecond timescales, whereupon a visual electrical signal is generated and transmitted to the brain. Time-resolved spectroscopic studies of the rod and cone photo-intermediaries enable the detailed understanding of initial events in vision, namely the key differences that underlie the functionally distinct scotopic (rod) and photopic (cone) visual systems. In this paper, we review our recent ultrafast (picoseconds to milliseconds) transient absorption studies of rod and cone visual pigments with a detailed comparison of the transient molecular spectra and kinetics of their respective photo-intermediaries. Key results include the characterization of the porphyropsin (carp fish rhodopsin) and human green-cone opsin photobleaching sequences, which show significant spectral and kinetic differences when compared against that of bovine rhodopsin. These results altogether reveal a rather strong interplay between the visual pigment structure and its corresponding photobleaching sequence, and relevant outstanding questions that will be further investigated through a forthcoming study of the human blue-cone visual pigment are discussed.
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Affiliation(s)
- Arjun Krishnamoorthi
- Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, USA
| | - Keyvan Khosh Abady
- Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, USA
| | - Dinesh Dhankhar
- Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, USA
- Thermo Fisher Scientific, Hillsboro, OR 97124, USA
| | - Peter M. Rentzepis
- Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, USA
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Dhankhar D, Nagpal A, Tachibanaki S, Li R, Cesario TC, Rentzepis PM. Comparison of Bovine and Carp Fish Visual Pigment Photo-Intermediates at Room Temperature. Photochem Photobiol 2022; 98:1303-1311. [PMID: 35313014 DOI: 10.1111/php.13621] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Accepted: 03/17/2022] [Indexed: 11/29/2022]
Abstract
This paper presents room temperature nanoseconds to milliseconds time-resolved spectra and kinetics of the intermediate states and species of bovine and carp fish rhodopsin visual pigments, which also contained ~5% cone pigments. The nanoseconds to milliseconds range cover all the major intermediates in the visual phototransduction process except the formation of bathorhodopsin intermediate which occurs at the femtosecond time scale. The dynamics of these visual pigment intermediates are initiated by excitation with a 532 nm nanosecond laser pulse. The recorded differences between bovine and carp rhodopsin time-resolved spectra of the formation and decay kinetics of their intermediates are presented and discussed. The data show that the carp samples batho intermediate decays faster, nearly by a factor of three, compared to the bovine samples. The formation and decay spectra and kinetics of rhodopsin outer segments and extracted rhodopsin inserted in buffer solution were found to be identical, with very small differences between them in the decay lifetimes of bathorhodopsin and formation of lumirhodopsin.
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Affiliation(s)
- Dinesh Dhankhar
- Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX, USA
| | - Anushka Nagpal
- Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX, USA
| | - Shuji Tachibanaki
- Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka, Japan
| | - Runze Li
- School of Physical Science and Technology, Shanghai Tech University, Shanghai, China
| | | | - Peter M Rentzepis
- Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX, USA
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Kliger DS, Lewis JW. Spectral and Kinetic Characterization of Visual Pigment Photointermediates. Isr J Chem 2013. [DOI: 10.1002/ijch.199500032] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Singh AK, Majumdar N. All-trans-N-retinylidenetryptamine Schiff base in surfactant solubilized water pools in heptane—a fluorescence study. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 1995. [DOI: 10.1016/1011-1344(95)07136-p] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Singh A, Aruna R. Fluorescence studies of tryptophan and tryptophan-retinal Schiff base in reverse micellar matrix. J Photochem Photobiol A Chem 1995. [DOI: 10.1016/1010-6030(95)04063-l] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Einterz CM, Hug SJ, Lewis JW, Kliger DS. Early photolysis intermediates of the artificial visual pigment 13-demethylrhodopsin. Biochemistry 1990; 29:1485-91. [PMID: 2334709 DOI: 10.1021/bi00458a020] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Nanosecond time-resolved absorption measurements are reported for the room temperature photolysis of a modified rhodopsin pigment, 13-demethylrhodopsin, which contains the chromophore 13-demethylretinal. The measurements are consistent with the formation of an equilibrium between a BA-THO-13-demethylrhodopsin species and a blue-shifted species (relative to the parent pigment), BSI-13-demethylrhodopsin. The results are compared to those acquired after photolysis of native bovine rhodopsin [Hug, S. J., Lewis, J. W., Einterz, C. M., Thorgeirsson, T. E., & Kliger, D. S. (1990) Biochemistry (preceding paper in this issue)] and to results obtained after photolysis of several modified isorhodopsin pigments in which the BSI species was first observed. It is concluded that in all of the pigments the results are consistent with the formation of an equilibrium between BATHO and BSI, which subsequently decays on a nanosecond time scale at room temperature to a lumirhodopsin intermediate.
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Affiliation(s)
- C M Einterz
- Chemistry Department, University of California, Santa Cruz 95064
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Holzwarth AR. Applications of ultrafast laser spectroscopy for the study of biological systems. Q Rev Biophys 1989; 22:239-326. [PMID: 2695961 DOI: 10.1017/s0033583500002985] [Citation(s) in RCA: 65] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
The discovery of mode-locked laser operation now nearly two decades ago has started a development which enables researchers to probe the dynamics of ultrafast physical and chemical processes at the molecular level on shorter and shorter time scales. Naturally the first applications were in the fields of photophysics and photochemistry where it was then possible for the first time to probe electronic and vibrational relaxation processes on a sub-nanosecond timescale. The development went from lasers producing pulses of many picoseconds to the shortest pulses which are at present just a few femtoseconds long. Soon after their discovery ultrashort pulses were applied also to biological systems which has revealed a wealth of information contributing to our understanding of a broadrange of biological processes on the molecular level.It is the aim of this review to discuss the recent advances and point out some future trends in the study of ultrafast processes in biological systems using laser techniques. The emphasis will be mainly on new results obtained during the last 5 or 6 years. The term ultrafast means that I shall restrict myself to sub-nanosecond processes with a few exceptions.
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Affiliation(s)
- A R Holzwarth
- Max-Planck-Institut für Strahlenchemie, Mülheim/Ruhr, FRG
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Einterz CM, Lewis JW, Kliger DS. Spectral and kinetic evidence for the existence of two forms of bathorhodopsin. Proc Natl Acad Sci U S A 1987; 84:3699-703. [PMID: 3473477 PMCID: PMC304943 DOI: 10.1073/pnas.84.11.3699] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Abstract
Transient-absorption difference spectra from 320 nm to 700 nm were obtained at times ranging from 30 ns to 1200 ns after 532-nm photolysis of rhodopsin at room temperature. Kinetics on this time scale at various wavelengths are also presented. The isosbestic points between spectra acquired at successive times after photolysis shift from 510 nm to 530 nm. This shift is inconsistent with a simple process of one bathorhodopsin (BathoR) intermediate being transformed into one lumirhodopsin (LumiR) intermediate on this time scale. The kinetics at 425 nm, 515 nm, and 575 nm could not be fit well to a single-exponential expression. The data are consistent with the existence of two forms of BathoR (BathoR1 and BathoR2) that exhibit different spectra and decay kinetics. The BathoR1 absorption maximum lies near 565 nm, and the BathoR1/LumiR1 isosbestic point is near 430 nm. The BathoR2 absorption maximum lies near 535 nm, and the BathoR2/LumiR2 isosbestic point is near 480 nm. The kinetics at the isosbestic wavelengths were fit to single-exponential expressions corresponding to BathoR1 and BathoR2 lifetimes of 170 +/- 20 ns and 36 +/- 15 ns, respectively.
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Gupta B, Goyal I. Absorption of light by visual pigments: a review of theoretical analyses. ACTA ACUST UNITED AC 1985. [DOI: 10.1016/0047-2670(85)85024-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Horwitz JS, Lewis JW, Powers MA, Kliger DS. Nanosecond laser photolysis of rhodopsin and isorhodopsin. Photochem Photobiol 1983; 37:181-8. [PMID: 6844421 DOI: 10.1111/j.1751-1097.1983.tb04456.x] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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Johnston DS, Clark AD, Kemp CM, Chapman D. An evaluation of the charge-transfer model for the chromophores of the retinal-containing proteins, rhodopsin and bacteriorhodopsin. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1982. [DOI: 10.1016/0005-2728(82)90160-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Trissl HW. On the rise time of the R1-component of the "early receptor potential": evidence for a fast light-induced charge separation in rhodopsin. BIOPHYSICS OF STRUCTURE AND MECHANISM 1982; 8:213-30. [PMID: 7093432 DOI: 10.1007/bf00535460] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
The rising phase of the R1-component of the early receptor potential from isolated cattle retinas was measured with high time resolution. When the measuring capacitance was 133 pF, a latency of about 200 ns was observed. A rise time of about 0.8 mus at 0 degrees C and 1.6 mus at 37 degrees C (extrapolated to ideal measuring conditions) was found. The negative temperature dependence indicates that the rise is not directly related to the production and decay of photolysis products of rhodopsin since the latter have positive temperature coefficients. An increase of the external measuring capacitance caused a slower rise time. The analysis of this effect allowed the determination of the source impedance of the R1-component. The experimental results can be described with a model in which it is assumed that a fast charge separation (ns or ps) takes place in the outer segment of a photoreceptor cell, and spreads passively to the inner segment via the resistance of the interconnecting cilium. The "inner" relaxation could be circumvented by using isolated rod outer segments which lack the passive inner segments, i.e., a rise time of 90 ns could be measured when isolated rod outer segments were attached to Millipore filters. The results suggest that the molecular event leading to the R1-component is an early charge separation which may be as fast as the cis-trans isomerization of the retinal chromophore.
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Sundstrom V, Rentzepis PM, Peters K, Applebury ML. Kinetics of rhodopsin at room temperature measured by picosecond spectroscopy. Nature 1977; 267:645-6. [PMID: 559949 DOI: 10.1038/267645a0] [Citation(s) in RCA: 46] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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METZLER DAVIDE. Light in Biology. Biochemistry 1977. [DOI: 10.1016/b978-0-12-492550-2.50018-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Goldschmidt CR, Ottolenghi M, Rosenfeld T. Primary processes in photochemistry of rhodopsin at room temperature. Nature 1976; 263:169-71. [PMID: 967257 DOI: 10.1038/263169a0] [Citation(s) in RCA: 30] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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