1
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Xin W, Zhong W, Shi Y, Shi Y, Jing J, Xu T, Guo J, Liu W, Li Y, Liang Z, Xin X, Cheng J, Hu W, Xu H, Liu Y. Low-Dimensional-Materials-Based Photodetectors for Next-Generation Polarized Detection and Imaging. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2024; 36:e2306772. [PMID: 37661841 DOI: 10.1002/adma.202306772] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Revised: 08/22/2023] [Indexed: 09/05/2023]
Abstract
The vector characteristics of light and the vectorial transformations during its transmission lay a foundation for polarized photodetection of objects, which broadens the applications of related detectors in complex environments. With the breakthrough of low-dimensional materials (LDMs) in optics and electronics over the past few years, the combination of these novel LDMs and traditional working modes is expected to bring new development opportunities in this field. Here, the state-of-the-art progress of LDMs, as polarization-sensitive components in polarized photodetection and even the imaging, is the main focus, with emphasis on the relationship between traditional working principle of polarized photodetectors (PPs) and photoresponse mechanisms of LDMs. Particularly, from the view of constitutive equations, the existing works are reorganized, reclassified, and reviewed. Perspectives on the opportunities and challenges are also discussed. It is hoped that this work can provide a more general overview in the use of LDMs in this field, sorting out the way of related devices for "more than Moore" or even the "beyond Moore" research.
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Affiliation(s)
- Wei Xin
- Key Laboratory of UV-Emitting Materials and Technology, Ministry of Education, Northeast Normal University, Changchun, Jilin, 130024, China
| | - Weiheng Zhong
- Key Laboratory of UV-Emitting Materials and Technology, Ministry of Education, Northeast Normal University, Changchun, Jilin, 130024, China
| | - Yujie Shi
- Key Laboratory of UV-Emitting Materials and Technology, Ministry of Education, Northeast Normal University, Changchun, Jilin, 130024, China
| | - Yimeng Shi
- Key Laboratory of UV-Emitting Materials and Technology, Ministry of Education, Northeast Normal University, Changchun, Jilin, 130024, China
| | - Jiawei Jing
- Key Laboratory of UV-Emitting Materials and Technology, Ministry of Education, Northeast Normal University, Changchun, Jilin, 130024, China
| | - Tengfei Xu
- State Key Laboratory of Infrared Physics, Shanghai Institute of Technical Physics, Chinese Academy of Sciences, Shanghai, 200083, China
| | - Jiaxiang Guo
- State Key Laboratory of Infrared Physics, Shanghai Institute of Technical Physics, Chinese Academy of Sciences, Shanghai, 200083, China
| | - Weizhen Liu
- Key Laboratory of UV-Emitting Materials and Technology, Ministry of Education, Northeast Normal University, Changchun, Jilin, 130024, China
| | - Yuanzheng Li
- Key Laboratory of UV-Emitting Materials and Technology, Ministry of Education, Northeast Normal University, Changchun, Jilin, 130024, China
| | - Zhongzhu Liang
- Key Laboratory of UV-Emitting Materials and Technology, Ministry of Education, Northeast Normal University, Changchun, Jilin, 130024, China
| | - Xing Xin
- Key Laboratory of UV-Emitting Materials and Technology, Ministry of Education, Northeast Normal University, Changchun, Jilin, 130024, China
| | - Jinluo Cheng
- GPL Photonics Laboratory, State Key Laboratory of Luminescence and Applications, Changchun Institute of Optics, Fine Mechanics and Physics, Chinese Academy of Sciences, Changchun, Jilin, 130033, China
| | - Weida Hu
- State Key Laboratory of Infrared Physics, Shanghai Institute of Technical Physics, Chinese Academy of Sciences, Shanghai, 200083, China
| | - Haiyang Xu
- Key Laboratory of UV-Emitting Materials and Technology, Ministry of Education, Northeast Normal University, Changchun, Jilin, 130024, China
| | - Yichun Liu
- Key Laboratory of UV-Emitting Materials and Technology, Ministry of Education, Northeast Normal University, Changchun, Jilin, 130024, China
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2
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Cronin TW, Porter ML, Bok MJ, Caldwell RL, Marshall J. Colour vision in stomatopod crustaceans. Philos Trans R Soc Lond B Biol Sci 2022; 377:20210278. [PMID: 36058241 PMCID: PMC9441230 DOI: 10.1098/rstb.2021.0278] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Accepted: 12/15/2021] [Indexed: 11/12/2022] Open
Abstract
The stomatopod crustaceans, or mantis shrimps, are colourful marine invertebrate predators. Their unusual compound eyes have dorsal and ventral regions resembling typical crustacean apposition designs separated by a unique region called the midband that consists of from two to six parallel rows of ommatidia. In species with six-row midbands, the dorsal four rows are themselves uniquely specialized for colour analysis. Rhabdoms of ommatidia in these rows are longitudinally divided into three distinct regions: an apical ultraviolet (UV) receptor, a shorter-wavelength middle tier receptor and a longer-wavelength proximal tier receptor. Each of the total of 12 photoreceptors has a different spectral sensitivity, potentially contributing to a colour-vision system with 12 channels. Mantis shrimps can discriminate both human-visible and UV colours, but with limited precision compared to other colour-vision systems. Here, we review the structure and function of stomatopod colour vision, examining the types of receptors present in a species, the spectral tuning of photoreceptors both within and across species, the neural analysis of colour and the genetics underlying the multiple visual pigments used for colour vision. Even today, after many decades of research into the colour vision of stomatopods, much of its operation and its use in nature remain a mystery. This article is part of the theme issue 'Understanding colour vision: molecular, physiological, neuronal and behavioural studies in arthropods'.
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Affiliation(s)
- Thomas W. Cronin
- Department of Biological Sciences, University of Maryland Baltimore County, Baltimore, MD 20250, USA
| | - Megan L. Porter
- Department of Biology, University of Hawai'i at Mānoa, Honolulu, HI 96822, USA
| | - Michael J. Bok
- Department of Biology, Lund Vision Group, Lund University, Lund 22362, Sweden
| | - Roy L. Caldwell
- Department of Integrative Biology, University of California, Berkeley, CA 94720, USA
| | - Justin Marshall
- Queensland Brain Institute, University of Queensland, Brisbane, Queensland 4072, Australia
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3
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Patel RN, Khil V, Abdurahmonova L, Driscoll H, Patel S, Pettyjohn-Robin O, Shah A, Goldwasser T, Sparklin B, Cronin TW. Mantis shrimp identify an object by its shape rather than its color during visual recognition. J Exp Biol 2021; 224:jeb.242256. [PMID: 33737389 PMCID: PMC8084571 DOI: 10.1242/jeb.242256] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2021] [Accepted: 03/04/2021] [Indexed: 11/20/2022]
Abstract
Mantis shrimp commonly inhabit seafloor environments with an abundance of visual features including conspecifics, predators, prey and landmarks used for navigation. Although these animals are capable of discriminating color and polarization, it is unknown what specific attributes of a visual object are important during recognition. Here, we show that mantis shrimp of the species Neogonodactylus oerstedii are able to learn the shape of a trained target. Further, when the shape and color of a target that they had been trained to identify were placed in conflict, N. oerstedii tended to choose the target of the trained shape over the target of the trained color. Thus, we conclude that the shape of the target was more salient than its color during recognition by N. oerstedii, suggesting that the shapes of objects, such as landmarks or other animals, are important for their identification by the species. Summary: Mantis shrimp can identify an object by its shape and seem to use the shape of an object over its color when recognizing it.
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Affiliation(s)
- Rickesh N Patel
- University of Maryland, Baltimore County, UMBC Department of Biological Sciences, 1000 Hilltop Circle, Baltimore, MD 21250, USA
| | - Veniamin Khil
- University of Maryland, Baltimore County, UMBC Department of Biological Sciences, 1000 Hilltop Circle, Baltimore, MD 21250, USA
| | - Laylo Abdurahmonova
- University of Maryland, Baltimore County, UMBC Department of Biological Sciences, 1000 Hilltop Circle, Baltimore, MD 21250, USA
| | - Holland Driscoll
- University of Maryland, Baltimore County, UMBC Department of Biological Sciences, 1000 Hilltop Circle, Baltimore, MD 21250, USA
| | - Sarina Patel
- University of Maryland, Baltimore County, UMBC Department of Biological Sciences, 1000 Hilltop Circle, Baltimore, MD 21250, USA
| | - Olivia Pettyjohn-Robin
- University of Maryland, Baltimore County, UMBC Department of Biological Sciences, 1000 Hilltop Circle, Baltimore, MD 21250, USA
| | - Ahmad Shah
- University of Maryland, Baltimore County, UMBC Department of Biological Sciences, 1000 Hilltop Circle, Baltimore, MD 21250, USA
| | - Tamar Goldwasser
- University of Maryland, Baltimore County, UMBC Department of Biological Sciences, 1000 Hilltop Circle, Baltimore, MD 21250, USA
| | - Benjamin Sparklin
- University of Maryland, Baltimore County, UMBC Department of Biological Sciences, 1000 Hilltop Circle, Baltimore, MD 21250, USA
| | - Thomas W Cronin
- University of Maryland, Baltimore County, UMBC Department of Biological Sciences, 1000 Hilltop Circle, Baltimore, MD 21250, USA
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4
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Galeb HA, Wilkinson EL, Stowell AF, Lin H, Murphy ST, Martin‐Hirsch PL, Mort RL, Taylor AM, Hardy JG. Melanins as Sustainable Resources for Advanced Biotechnological Applications. GLOBAL CHALLENGES (HOBOKEN, NJ) 2021; 5:2000102. [PMID: 33552556 PMCID: PMC7857133 DOI: 10.1002/gch2.202000102] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Revised: 11/04/2020] [Indexed: 05/17/2023]
Abstract
Melanins are a class of biopolymers that are widespread in nature and have diverse origins, chemical compositions, and functions. Their chemical, electrical, optical, and paramagnetic properties offer opportunities for applications in materials science, particularly for medical and technical uses. This review focuses on the application of analytical techniques to study melanins in multidisciplinary contexts with a view to their use as sustainable resources for advanced biotechnological applications, and how these may facilitate the achievement of the United Nations Sustainable Development Goals.
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Affiliation(s)
- Hanaa A. Galeb
- Department of ChemistryLancaster UniversityLancasterLA1 4YBUK
- Department of ChemistryScience and Arts CollegeRabigh CampusKing Abdulaziz UniversityJeddah21577Saudi Arabia
| | - Emma L. Wilkinson
- Department of Biomedical and Life SciencesLancaster UniversityLancasterLA1 4YGUK
| | - Alison F. Stowell
- Department of Organisation, Work and TechnologyLancaster University Management SchoolLancaster UniversityLancasterLA1 4YXUK
| | - Hungyen Lin
- Department of EngineeringLancaster UniversityLancasterLA1 4YWUK
| | - Samuel T. Murphy
- Department of EngineeringLancaster UniversityLancasterLA1 4YWUK
- Materials Science InstituteLancaster UniversityLancasterLA1 4YBUK
| | - Pierre L. Martin‐Hirsch
- Lancashire Teaching Hospitals NHS TrustRoyal Preston HospitalSharoe Green LanePrestonPR2 9HTUK
| | - Richard L. Mort
- Department of Biomedical and Life SciencesLancaster UniversityLancasterLA1 4YGUK
| | - Adam M. Taylor
- Lancaster Medical SchoolLancaster UniversityLancasterLA1 4YWUK
| | - John G. Hardy
- Department of ChemistryLancaster UniversityLancasterLA1 4YBUK
- Materials Science InstituteLancaster UniversityLancasterLA1 4YBUK
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5
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Exceptional diversity of opsin expression patterns in Neogonodactylus oerstedii (Stomatopoda) retinas. Proc Natl Acad Sci U S A 2020; 117:8948-8957. [PMID: 32241889 DOI: 10.1073/pnas.1917303117] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
Abstract
Stomatopod crustaceans possess some of the most complex animal visual systems, including at least 16 spectrally distinct types of photoreceptive units (e.g., assemblages of photoreceptor cells). Here we fully characterize the set of opsin genes expressed in retinal tissues and determine expression patterns of each in the stomatopod Neogonodactylus oerstedii Using a combination of transcriptome and RACE sequencing, we identified 33 opsin transcripts expressed in each N. oerstedii eye, which are predicted to form 20 long-wavelength-sensitive, 10 middle-wavelength-sensitive, and three UV-sensitive visual pigments. Observed expression patterns of these 33 transcripts were highly unusual in five respects: 1) All long-wavelength and short/middle-wavelength photoreceptive units expressed multiple opsins, while UV photoreceptor cells expressed single opsins; 2) most of the long-wavelength photoreceptive units expressed at least one middle-wavelength-sensitive opsin transcript; 3) the photoreceptors involved in spatial, motion, and polarization vision expressed more transcripts than those involved in color vision; 4) there is a unique opsin transcript that is expressed in all eight of the photoreceptive units devoted to color vision; and 5) expression patterns in the peripheral hemispheres of the eyes suggest visual specializations not previously recognized in stomatopods. Elucidating the expression patterns of all opsin transcripts expressed in the N. oerstedii retina reveals the potential for previously undocumented functional diversity in the already complex stomatopod eye and is a first step toward understanding the functional significance of the unusual abundance of opsins found in many arthropod species' visual systems.
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6
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Optic lobe organization in stomatopod crustacean species possessing different degrees of retinal complexity. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2019; 206:247-258. [PMID: 31811397 DOI: 10.1007/s00359-019-01387-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2019] [Revised: 11/22/2019] [Accepted: 11/26/2019] [Indexed: 01/10/2023]
Abstract
Stomatopod crustaceans possess tripartite compound eyes; upper and lower hemispheres are separated by an equatorial midband of several ommatidial rows. The organization of stomatopod retinas is well established, but their optic lobes have been studied less. We used histological staining, immunolabeling, and fluorescent tracer injections to compare optic lobes in two 6-row midband species, Neogonodactylus oerstedii and Pseudosquilla ciliata, to those in two 2-row midband species, Squilla empusa and Alima pacifica. Compared to the 6-row species, we found structural differences in all optic neuropils in both 2-row species. Photoreceptor axons from 2-row midband ommatidia supply two sets of lamina cartridges; however, conspicuous spaces lacking lamina cartridges are observed in locations corresponding to where the cartridges of the upper four ommatidial rows of 6-row species would exist. The tripartite arrangement and enlarged projections containing fibers associated with the two rows of midband ommatidia can be traced throughout the entire optic lobe. However, 2-row species lack some features of medullar and lobular neuropils in 6-row species. Our results support the hypothesis that 2-row midband species are derived from a 6-row ancestor, and suggest specializations in the medulla and lobula found solely in 6-row species are important for color and polarization analysis.
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7
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Thoen HH, Wolff GH, Marshall J, Sayre ME, Strausfeld NJ. The reniform body: An integrative lateral protocerebral neuropil complex of Eumalacostraca identified in Stomatopoda and Brachyura. J Comp Neurol 2019; 528:1079-1094. [PMID: 31621907 DOI: 10.1002/cne.24788] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2019] [Revised: 09/27/2019] [Accepted: 10/02/2019] [Indexed: 11/10/2022]
Abstract
Mantis shrimps (Stomatopoda) possess in common with other crustaceans, and with Hexapoda, specific neuroanatomical attributes of the protocerebrum, the most anterior part of the arthropod brain. These attributes include assemblages of interconnected centers called the central body complex and in the lateral protocerebra, situated in the eyestalks, paired mushroom bodies. The phenotypic homologues of these centers across Panarthropoda support the view that ancestral integrative circuits crucial to action selection and memory have persisted since the early Cambrian or late Ediacaran. However, the discovery of another prominent integrative neuropil in the stomatopod lateral protocerebrum raises the question whether it is unique to Stomatopoda or at least most developed in this lineage, which may have originated in the upper Ordovician or early Devonian. Here, we describe the neuroanatomical structure of this center, called the reniform body. Using confocal microscopy and classical silver staining, we demonstrate that the reniform body receives inputs from multiple sources, including the optic lobe's lobula. Although the mushroom body also receives projections from the lobula, it is entirely distinct from the reniform body, albeit connected to it by discrete tracts. We discuss the implications of their coexistence in Stomatopoda, the occurrence of the reniform body in another eumalacostracan lineage and what this may mean for our understanding of brain functionality in Pancrustacea.
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Affiliation(s)
- Hanne Halkinrud Thoen
- Sensory Neurobiology Group, Queensland Brain Institute, University of Queensland, Brisbane, Australia
| | | | - Justin Marshall
- Sensory Neurobiology Group, Queensland Brain Institute, University of Queensland, Brisbane, Australia
| | - Marcel E Sayre
- Lund Vision Group, Department of Biology, Lund University, Lund, Sweden
| | - Nicholas James Strausfeld
- Department of Neuroscience, School of Mind, Brain and Behavior, University of Arizona, Tucson, Arizona
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8
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Kingston ACN, Lucia RL, Havens LT, Cronin TW, Speiser DI. Vision in the snapping shrimp Alpheus heterochaelis. J Exp Biol 2019; 222:jeb.209015. [PMID: 31624099 DOI: 10.1242/jeb.209015] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2019] [Accepted: 10/07/2019] [Indexed: 11/20/2022]
Abstract
Snapping shrimp engage in heterospecific behavioral associations in which their partners, such as goby fish, help them avoid predators. It has been argued that snapping shrimp engage in these partnerships because their vision is impaired by their orbital hood, an extension of their carapace that covers their eyes. To examine this idea, we assessed the visual abilities of snapping shrimp. We found the big claw snapping shrimp, Alpheus heterochaelis, has spatial vision provided by compound eyes with reflecting superposition optics. These eyes view the world through an orbital hood that is 80-90% as transparent as seawater across visible wavelengths (400-700 nm). Through electroretinography and microspectrophotometry, we found the eyes of A. heterochaelis have a temporal sampling rate of >40 Hz and have at least two spectral classes of photoreceptors (λmax=500 and 519 nm). From the results of optomotor behavioral experiments, we estimate the eyes of A. heterochaelis provide spatial vision with an angular resolution of ∼8 deg. We conclude that snapping shrimp have competent visual systems, suggesting the function and evolution of their behavioral associations should be re-assessed and that these animals may communicate visually with conspecifics and heterospecific partners.
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Affiliation(s)
- Alexandra C N Kingston
- Department of Biological Sciences, University of South Carolina, Columbia, SC 29208, USA
| | - Rebecca L Lucia
- Department of Biological Sciences, University of South Carolina, Columbia, SC 29208, USA
| | - Luke T Havens
- Department of Biological Sciences, University of South Carolina, Columbia, SC 29208, USA.,Department of Biology, University of North Carolina, Chapel Hill, NC 27599, USA
| | - Thomas W Cronin
- Department of Biological Sciences, University of Maryland Baltimore County, Baltimore, MD 21250, USA
| | - Daniel I Speiser
- Department of Biological Sciences, University of South Carolina, Columbia, SC 29208, USA
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9
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Maia R, Gruson H, Endler JA, White TE. pavo
2: New tools for the spectral and spatial analysis of colour in
r. Methods Ecol Evol 2019. [DOI: 10.1111/2041-210x.13174] [Citation(s) in RCA: 193] [Impact Index Per Article: 38.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- Rafael Maia
- Department of Ecology, Evolution and Environmental Biology Columbia University New York NY
| | - Hugo Gruson
- CEFE, University Montpellier CNRS University Paul Valery Montpellier 3 EPHE IRD Montpellier France
| | - John A. Endler
- School of Life and Environmental Sciences Deakin University Waurn Ponds Campus Vic. Australia
| | - Thomas E. White
- School of Life and Environmental Sciences University of Sydney Sydney NSW Australia
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10
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Bok MJ, Roberts NW, Cronin TW. Behavioural evidence for polychromatic ultraviolet sensitivity in mantis shrimp. Proc Biol Sci 2018; 285:rspb.2018.1384. [PMID: 30068672 DOI: 10.1098/rspb.2018.1384] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2018] [Accepted: 07/10/2018] [Indexed: 11/12/2022] Open
Abstract
Stomatopod crustaceans are renowned for their elaborate visual systems. Their eyes contain a plethora of photoreceptors specialized for chromatic and polarization detection, including several that are sensitive to varying wavelength ranges and angles of polarization within the ultraviolet (UV) range (less than 400 nm). Behavioural experiments have previously suggested that UV photoreception plays a role in stomatopod communication, but these experiments have only manipulated the entire UV range. Here, using a behavioural approach, we examine UV vision in the stomatopod Haptosquilla trispinosa Using binary trained choice assays as well as innate burrow-choice experiments, we assessed the ability of H. trispinosa to detect and respond to narrow-band LED stimuli peaking near 314 nm (UVB) versus 379 nm (UVA) in wavelength. We find that H. trispinosa can discriminate these stimuli and appears to display an aversive reaction to UVB light, suggesting segregated behavioural responses to stimuli within the UV range. Furthermore, we find that H. trispinosa can discriminate stimuli peaking near 379 nm versus 351 nm in wavelength, suggesting that their wavelength discrimination in the UV is comparable to their performance in the human-visible range.
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Affiliation(s)
- Michael J Bok
- School of Biological Sciences, University of Bristol, Bristol BS8 1TQ, UK
| | - Nicholas W Roberts
- School of Biological Sciences, University of Bristol, Bristol BS8 1TQ, UK
| | - Thomas W Cronin
- Department of Biological Sciences, University of Maryland Baltimore County, Baltimore, MD 21250, USA
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11
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Abstract
The currently unsurpassed diversity of photoreceptors found in the eyes of stomatopods, or mantis shrimps, is achieved through a variety of opsin-based visual pigments and optical filters. However, the presence of extraocular photoreceptors in these crustaceans is undescribed. Opsins have been found in extraocular tissues across animal taxa, but their functions are often unknown. Here, we show that the mantis shrimp Neogonodactylus oerstedii has functional cerebral photoreceptors, which expands the suite of mechanisms by which mantis shrimp sense light. Illumination of extraocular photoreceptors elicits behaviors akin to common arthropod escape responses, which persist in blinded individuals. The anterior central nervous system, which is illuminated when a mantis shrimp's cephalothorax protrudes from its burrow to search for predators, prey, or mates, appears to be photosensitive and to feature two types of opsin-based, potentially histaminergic photoreceptors. A pigmented ventral eye that may be capable of color discrimination extends from the cerebral ganglion, or brain, against the transparent outer carapace, and exhibits a rapid electrical response when illuminated. Additionally, opsins and histamine are expressed in several locations of the eyestalks and cerebral ganglion, where any photoresponses could contribute to shelter-seeking behaviors and other functions.
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12
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Affiliation(s)
- Rafael Maia
- Department of Ecology, Evolution and Environmental Biology, Columbia University, New York, NY, USA
| | - Thomas E White
- School of Life and Environmental Sciences, University of Sydney, Camperdown, Sydney, NSW, Australia
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13
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Thoen HH, Sayre ME, Marshall J, Strausfeld NJ. Representation of the stomatopod's retinal midband in the optic lobes: Putative neural substrates for integrating chromatic, achromatic and polarization information. J Comp Neurol 2018; 526:1148-1165. [PMID: 29377111 DOI: 10.1002/cne.24398] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2017] [Revised: 01/18/2018] [Accepted: 01/18/2018] [Indexed: 02/05/2023]
Abstract
Stomatopods have an elaborate visual system served by a retina that is unique to this class of pancrustaceans. Its upper and lower eye hemispheres encode luminance and linear polarization while an equatorial band of photoreceptors termed the midband detects color, circularly polarized light and linear polarization in the ultraviolet. In common with many malacostracan crustaceans, stomatopods have stalked eyes, but they can move these independently within three degrees of rotational freedom. Both eyes separately use saccadic and scanning movements but they can also move in a coordinated fashion to track selected targets or maintain a forward eyestalk posture during swimming. Visual information is initially processed in the first two optic neuropils, the lamina and the medulla, where the eye's midband is represented by enlarged regions within each neuropil that contain populations of neurons, the axons of which are segregated from the neuropil regions subtending the hemispheres. Neuronal channels representing the midband extend from the medulla to the lobula where populations of putative inhibitory glutamic acid decarboxylase-positive neurons and tyrosine hydroxylase-positive neurons intrinsic to the lobula have specific associations with the midband. Here we investigate the organization of the midband representation in the medulla and the lobula in the context of their overall architecture. We discuss the implications of observed arrangements, in which midband inputs to the lobula send out collaterals that extend across the retinotopic mosaic pertaining to the hemispheres. This organization suggests an integrative design that diverges from the eumalacostracan ground pattern and, for the stomatopod, enables color and polarization information to be integrated with luminance information that presumably encodes shape and motion.
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Affiliation(s)
- Hanne Halkinrud Thoen
- Sensory Neurobiology Group, Queensland Brain Institute, University of Queensland, Brisbane, Australia
| | - Marcel E Sayre
- Department of Neuroscience, School of Mind, Brain and Behavior, University of Arizona, Tucson, Arizona
| | - Justin Marshall
- Sensory Neurobiology Group, Queensland Brain Institute, University of Queensland, Brisbane, Australia
| | - Nicholas James Strausfeld
- Department of Neuroscience, School of Mind, Brain and Behavior, University of Arizona, Tucson, Arizona
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14
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Cronin TW, Garcia M, Gruev V. Multichannel spectrometers in animals. BIOINSPIRATION & BIOMIMETICS 2018; 13:021001. [PMID: 29313524 DOI: 10.1088/1748-3190/aaa61b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Multispectral, hyperspectral, polarimetric, and other types of multichannel imaging spectrometers are coming into common use for a variety of applications, including remote sensing, material identification, forensics, and medical diagnosis. These instruments are often bulky and intolerant of field abuse, so designing compact, reliable, portable, and robust devices is a priority. In contrast to most engineering designs, animals have been building compact and robust multichannel imaging systems for millennia-their eyes. Biological sensors arise by evolution, of course, and are not designed 'for' a particular use; they exist because the creatures that were blessed with useful mutations were better able to survive and reproduce than their competitors. While this is an inefficient process for perfecting a sensor, it brings unexpected innovations and novel concepts into visual system design-concepts that may be useful in the inspiration of new engineered solutions to problematic challenges, like the ones mentioned above. Here, we review a diversity of multichannel visual systems from both vertebrate and invertebrate animals, considering the receptor molecules and cells, spectral sensitivity and its tuning, and some aspects of the higher-level processing systems used to shape spectral (and polarizational) channels in vision. The eyes of mantis shrimps are presented as potential models for biomimetic multichannel imaging systems. We end with a description of a bioinspired, newly developed multichannel spectral/polarimetric imaging system based on mantis shrimp vision that is highly adaptable to field application.
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Affiliation(s)
- Thomas W Cronin
- Department of Biological Sciences, University of Maryland Baltimore County, Baltimore, MD 21250, United States of America
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15
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Jacobs GH. Photopigments and the dimensionality of animal color vision. Neurosci Biobehav Rev 2017; 86:108-130. [PMID: 29224775 DOI: 10.1016/j.neubiorev.2017.12.006] [Citation(s) in RCA: 43] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2017] [Revised: 12/04/2017] [Accepted: 12/05/2017] [Indexed: 12/31/2022]
Abstract
Early color-matching studies established that normal human color vision is trichromatic. Subsequent research revealed a causal link between trichromacy and the presence in the retina of three classes of cone photopigments. Over the years, measurements of the photopigment complements of other species have expanded greatly and these are frequently used to predict the dimensionality of an animal's color vision. This review provides an account of how the linkage between the number of active photopigments and the dimensions of human color vision developed, summarizes the various mechanisms that can impact photopigment spectra and number, and provides an across-species survey to examine cases where the photopigment link to the dimensionality of color vision has been claimed. The literature reveals numerous instances where the human model fails to account for the ways in which the visual systems of other animals exploit information obtained from the presence of multiple photopigments in support of their behavior.
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Affiliation(s)
- Gerald H Jacobs
- Department of Psychological and Brain Science, University of California, Santa Barbara, CA 93106, USA.
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16
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Lin C, Cronin TW. Two visual systems in one eyestalk: The unusual optic lobe metamorphosis in the stomatopod Alima pacifica. Dev Neurobiol 2017; 78:3-14. [PMID: 29082670 DOI: 10.1002/dneu.22550] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2017] [Revised: 10/13/2017] [Accepted: 10/25/2017] [Indexed: 11/11/2022]
Abstract
The compound eyes of adult stomatopod crustaceans have two to six ommatidial rows at the equator, called the midband, that are often specialized for color and polarization vision. Beneath the retina, this midband specialization is represented as enlarged optic lobe lamina cartridges and a hernia-like expansion in the medulla. We studied how the optic lobe transforms from the larvae, which possess typical crustacean larval compound eyes without a specialized midband, through metamorphosis into the adults with the midband in a two midband-row species Alima pacifica. Using histological staining, immunolabeling, and 3D reconstruction, we show that the last-stage stomatopod larvae possess double-retina eyes, in which the developing adult visual system forms adjacent to, but separate from, the larval visual system. Beneath the two retinas, the optic lobe also contains two sets of optic neuropils, comprising of a larval lamina, medulla, and lobula, as well as an adult lamina, medulla, and lobula. The larval eye and all larval optic neuropils degenerate and disappear approximately a week after metamorphosis. In stomatopods, the unique adult visual system and all optic neuropils develop alongside the larval system in the eyestalk of last-stage larvae, where two visual systems and two independent visual processing pathways coexist. © 2017 Wiley Periodicals, Inc. Develop Neurobiol 78: 3-14, 2018.
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Affiliation(s)
- Chan Lin
- Department of Biological Sciences, University of Maryland Baltimore County, Baltimore, Maryland, 21250
| | - Thomas W Cronin
- Department of Biological Sciences, University of Maryland Baltimore County, Baltimore, Maryland, 21250
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17
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Thoen HH, Chiou TH, Marshall NJ. Intracellular Recordings of Spectral Sensitivities in Stomatopods: a Comparison across Species. Integr Comp Biol 2017; 57:1117-1129. [PMID: 28992286 DOI: 10.1093/icb/icx111] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Abstract
Stomatopods (mantis shrimps) possess one of the most complex eyes in the world with photoreceptors detecting up to 12 different colors. It is not yet understood why stomatopods have almost four times the number of spectral photoreceptors compared with most other animals. It has, however, been suggested that these seemingly redundant photoreceptors could encode color through a new mechanism. Here we compare the spectral sensitivities across five species of stomatopods within the superfamily Gonodactyloidea using intracellular electrophysiological recordings. The results show that the spectral sensitivities across species of stomatopods are remarkably similar apart from some variation in the long-wavelength receptors. We relate these results to spectral sensitivity estimates previously obtained using microspectrophotometry and discuss the variation in the spectral sensitivity maxima (λmax) of the long-wavelength receptors in regard to the previous findings that stomatopods are able to tune their spectral sensitivities according to their respective light environment. We further discuss the similarities of the spectral sensitivities across species of stomatopods in regard to how color information might be processed by their visual systems.
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Affiliation(s)
- Hanne H Thoen
- Sensory Neurobiology Group, Queensland Brain Institute, University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia
| | - Tsyr-Huei Chiou
- Department of Life Sciences, National Cheng Kung University, Tainan City 70101, Taiwan, ROC
| | - N Justin Marshall
- Sensory Neurobiology Group, Queensland Brain Institute, University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia
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18
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Thoen HH, Strausfeld NJ, Marshall J. Neural organization of afferent pathways from the stomatopod compound eye. J Comp Neurol 2017; 525:3010-3030. [PMID: 28577301 DOI: 10.1002/cne.24256] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2017] [Revised: 04/25/2017] [Accepted: 05/16/2017] [Indexed: 01/01/2023]
Abstract
Crustaceans and insects share many similarities of brain organization suggesting that their common ancestor possessed some components of those shared features. Stomatopods (mantis shrimps) are basal eumalacostracan crustaceans famous for their elaborate visual system, the most complex of which possesses 12 types of color photoreceptors and the ability to detect both linearly and circularly polarized light. Here, using a palette of histological methods we describe neurons and their neuropils most immediately associated with the stomatopod retina. We first provide a general overview of the major neuropil structures in the eyestalks lateral protocerebrum, with respect to the optical pathways originating from the six rows of specialized ommatidia in the stomatopod's eye, termed the midband. We then focus on the structure and neuronal types of the lamina, the first optic neuropil in the stomatopod visual system. Using Golgi impregnations to resolve single neurons we identify cells in different parts of the lamina corresponding to the three different regions of the stomatopod eye (midband and the upper and lower eye halves). While the optic cartridges relating to the spectral and polarization sensitive midband ommatidia show some specializations not found in the lamina serving the upper and lower eye halves, the general morphology of the midband lamina reflects cell types elsewhere in the lamina and cell types described for other species of Eumalacostraca.
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Affiliation(s)
- Hanne H Thoen
- Sensory Neurobiology Group, Queensland Brain Institute, University of Queensland, St Lucia, Brisbane, Queensland, 4072, Australia
| | - Nicholas J Strausfeld
- Department of Neuroscience, School of Mind, Brain and Behavior, University of Arizona, Tucson, Arizona, 85721
| | - Justin Marshall
- Sensory Neurobiology Group, Queensland Brain Institute, University of Queensland, St Lucia, Brisbane, Queensland, 4072, Australia
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19
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McCulloch KJ, Yuan F, Zhen Y, Aardema ML, Smith G, Llorente-Bousquets J, Andolfatto P, Briscoe AD. Sexual Dimorphism and Retinal Mosaic Diversification following the Evolution of a Violet Receptor in Butterflies. Mol Biol Evol 2017; 34:2271-2284. [DOI: 10.1093/molbev/msx163] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
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20
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Spitschan M, Lucas RJ, Brown TM. Chromatic clocks: Color opponency in non-image-forming visual function. Neurosci Biobehav Rev 2017; 78:24-33. [PMID: 28442402 DOI: 10.1016/j.neubiorev.2017.04.016] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2017] [Revised: 03/30/2017] [Accepted: 04/15/2017] [Indexed: 12/25/2022]
Abstract
During dusk and dawn, the ambient illumination undergoes drastic changes in irradiance (or intensity) and spectrum (or color). While the former is a well-studied factor in synchronizing behavior and physiology to the earth's 24-h rotation, color sensitivity in the regulation of circadian rhythms has not been systematically studied. Drawing on the concept of color opponency, a well-known property of image-forming vision in many vertebrates (including humans), we consider how the spectral shifts during twilight are encoded by a color-opponent sensory system for non-image-forming (NIF) visual functions, including phase shifting and melatonin suppression. We review electrophysiological evidence for color sensitivity in the pineal/parietal organs of fish, amphibians and reptiles, color coding in neurons in the circadian pacemaker in mice as well as sporadic evidence for color sensitivity in NIF visual functions in birds and mammals. Together, these studies suggest that color opponency may be an important modulator of light-driven physiological and behavioral responses.
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Affiliation(s)
- Manuel Spitschan
- Stanford University, Department of Psychiatry & Behavioral Sciences, Stanford, CA, USA; VA Palo Alto Health Care System, Mental Illness Research Education and Clinical Center, Palo Alto, CA, USA.
| | - Robert J Lucas
- University of Manchester, Faculty of Life Sciences, Manchester, United Kingdom
| | - Timothy M Brown
- University of Manchester, Faculty of Life Sciences, Manchester, United Kingdom
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21
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Thoen HH, Marshall J, Wolff GH, Strausfeld NJ. Insect-Like Organization of the Stomatopod Central Complex: Functional and Phylogenetic Implications. Front Behav Neurosci 2017; 11:12. [PMID: 28223924 PMCID: PMC5294995 DOI: 10.3389/fnbeh.2017.00012] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2016] [Accepted: 01/13/2017] [Indexed: 11/17/2022] Open
Abstract
One approach to investigating functional attributes of the central complex is to relate its various elaborations to pancrustacean phylogeny, to taxon-specific behavioral repertoires and ecological settings. Here we review morphological similarities between the central complex of stomatopod crustaceans and the central complex of dicondylic insects. We discuss whether their central complexes possess comparable functional properties, despite the phyletic distance separating these taxa, with mantis shrimp (Stomatopoda) belonging to the basal branch of Eumalacostraca. Stomatopods possess the most elaborate visual receptor system in nature and display a fascinating behavioral repertoire, including refined appendicular dexterity such as independently moving eyestalks. They are also unparalleled in their ability to maneuver during both swimming and substrate locomotion. Like other pancrustaceans, stomatopods possess a set of midline neuropils, called the central complex, which in dicondylic insects have been shown to mediate the selection of motor actions for a range of behaviors. As in dicondylic insects, the stomatopod central complex comprises a modular protocerebral bridge (PB) supplying decussating axons to a scalloped fan-shaped body (FB) and its accompanying ellipsoid body (EB), which is linked to a set of paired noduli and other recognized satellite regions. We consider the functional implications of these attributes in the context of stomatopod behaviors, particularly of their eyestalks that can move independently or conjointly depending on the visual scene.
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Affiliation(s)
- Hanne H Thoen
- Sensory Neurobiology Group, Queensland Brain Institute, University of Queensland, St. Lucia Brisbane, QLD, Australia
| | - Justin Marshall
- Sensory Neurobiology Group, Queensland Brain Institute, University of Queensland, St. Lucia Brisbane, QLD, Australia
| | | | - Nicholas J Strausfeld
- Department of Neuroscience, School of Mind, Brain and Behavior, University of Arizona Tucson, AZ, USA
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22
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McCulloch KJ, Osorio D, Briscoe AD. Sexual dimorphism in the compound eye of Heliconius erato: a nymphalid butterfly with at least five spectral classes of photoreceptor. J Exp Biol 2016; 219:2377-87. [DOI: 10.1242/jeb.136523] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2015] [Accepted: 05/23/2016] [Indexed: 11/20/2022]
Abstract
Most butterfly families expand the number of spectrally-distinct photoreceptors in their compound eye by opsin gene duplications together with lateral filter pigments, however most nymphalid genera have limited diversity, with only three or four spectral types of photoreceptor. Here we examine the spatial pattern of opsin expression and photoreceptor spectral sensitivities in Heliconius erato, a nymphalid with duplicate ultraviolet opsin genes, UVRh1 and UVRh2. We find that the H. erato compound eye is sexually dimorphic. Females express the two UV opsin proteins in separate photoreceptors, but males do not express UVRh1. Intracellular recordings confirmed that females have three short wavelength-sensitive photoreceptors (λmax=356 nm, ∼390 nm and 470 nm), while males have two (λmax=390 nm and ∼470 nm). We also found two long wavelength-sensitive photoreceptors (green, λmax ∼555 nm, and red, λmax ∼600 nm), which express the same LW opsin. The red cell's shifted sensitivity is probably due to perirhabdomal filtering pigments. Sexual dimorphism of the UV-absorbing rhodopsins may reflect the females' need to discriminate conspecifics from co-mimics. Red-green color vision may be used to detect differences in red coloration on Heliconius wings, or for host-plant identification. Among nymphalids so far investigated, only H. erato is known to possess five spectral classes of photoreceptor; sexual dimorphism of the eye via suppression of one class of opsin (here UVRh1 in males) has not—to our knowledge—been reported in any animal.
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Affiliation(s)
- Kyle J. McCulloch
- Department of Ecology and Evolutionary Biology, University of California, Irvine, 321 Steinhaus Hall, Irvine, CA 92697, USA
| | - Daniel Osorio
- School of Life Sciences, University of Sussex, Brighton, BN1 9QG, United Kingdom
| | - Adriana D. Briscoe
- Department of Ecology and Evolutionary Biology, University of California, Irvine, 321 Steinhaus Hall, Irvine, CA 92697, USA
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23
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Abstract
Vision is limited by the measurements taken by the cone photoreceptors. To provide useful perceptual representations, the brain must go beyond the measurements and make inferences about the scene being viewed. This article considers the first stages of spatiochromatic vision. We show how spatial and chromatic information become intertwined by the optics of the eye and because of the structure of the retinal cone mosaic, and we consider the consequent implications for perception. Because there is at most one cone at each retinal location, the standard treatment of human trichromacy does not apply at fine spatial scales. Rather, trichromacy results from a perceptual inference based on measurements from cones of different classes at different locations. Our treatment emphasizes linking physics, biology, and computation with the goal of providing a framework for a larger understanding of how the brain interprets photoreceptor excitations to see objects and their properties.
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Affiliation(s)
- David H Brainard
- Department of Psychology, University of Pennsylvania, Philadelphia, Pennsylvania 19104;
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24
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Abstract
Using two UV-sensitive visual pigments and the UV-filtering properties of four mycosporine-like amino acids, mantis shrimp create six spectrally distinct UV receptors. This is yet another example of the unique ways in which mantis shrimp have adapted to extract information from their visual world.
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Affiliation(s)
- Ellis R Loew
- Department of Biomedical Sciences, Cornell University, Ithaca, NY 14853, USA.
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25
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Dalton BE, Loew ER, Cronin TW, Carleton KL. Spectral tuning by opsin coexpression in retinal regions that view different parts of the visual field. Proc Biol Sci 2015; 281:rspb.2014.1980. [PMID: 25377457 DOI: 10.1098/rspb.2014.1980] [Citation(s) in RCA: 65] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
Vision frequently mediates critical behaviours, and photoreceptors must respond to the light available to accomplish these tasks. Most photoreceptors are thought to contain a single visual pigment, an opsin protein bound to a chromophore, which together determine spectral sensitivity. Mechanisms of spectral tuning include altering the opsin, changing the chromophore and incorporating pre-receptor filtering. A few exceptions to the use of a single visual pigment have been documented in which a single mature photoreceptor coexpresses opsins that form spectrally distinct visual pigments, and in these exceptions the functional significance of coexpression is unclear. Here we document for the first time photoreceptors coexpressing spectrally distinct opsin genes in a manner that tunes sensitivity to the light environment. Photoreceptors of the cichlid fish, Metriaclima zebra, mix different pairs of opsins in retinal regions that view distinct backgrounds. The mixing of visual pigments increases absorbance of the corresponding background, potentially aiding the detection of dark objects. Thus, opsin coexpression may be a novel mechanism of spectral tuning that could be useful for detecting prey, predators and mates. However, our calculations show that coexpression of some opsins can hinder colour discrimination, creating a trade-off between visual functions.
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Affiliation(s)
- Brian E Dalton
- Department of Biology, University of Maryland, Baltimore County, MD 21250, USA Department of Biology, University of Maryland, College Park, MD 20742, USA
| | - Ellis R Loew
- Department of Biomedical Sciences, Cornell University, Ithaca, NY 14853, USA
| | - Thomas W Cronin
- Department of Biology, University of Maryland, Baltimore County, MD 21250, USA
| | - Karen L Carleton
- Department of Biology, University of Maryland, College Park, MD 20742, USA
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26
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Evolution of color vision. Results Probl Cell Differ 2015; 37:135-49. [PMID: 25707073 DOI: 10.1007/978-3-540-45398-7_9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
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27
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Marshall J, Carleton KL, Cronin T. Colour vision in marine organisms. Curr Opin Neurobiol 2015; 34:86-94. [PMID: 25725325 DOI: 10.1016/j.conb.2015.02.002] [Citation(s) in RCA: 65] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2015] [Revised: 02/02/2015] [Accepted: 02/05/2015] [Indexed: 12/18/2022]
Abstract
Colour vision in the marine environment is on average simpler than in terrestrial environments with simple or no colour vision through monochromacy or dichromacy. Monochromacy is found in marine mammals and elasmobranchs, including whales and sharks, but not some rays. Conversely, there is also a greater diversity of colour vision in the ocean than on land, examples being the polyspectral stomatopods and the many colour vision solutions found among reef fish. Recent advances in sequencing reveal more opsin (visual pigment) types than functionally useful at any one time. This diversity arises through opsin duplication and conversion. Such mechanisms allow pick-and-mix adaptation that tunes colour vision on a variety of very short non-evolutionary timescales. At least some of the diversity in marine colour vision is best explained as unconventional colour vision or as neutral drift.
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Affiliation(s)
- Justin Marshall
- Queensland Brain Institute, University of Queensland, Brisbane, Queensland 4070, Australia.
| | - Karen L Carleton
- Department of Biology, University of Maryland, College Park, MD 20742, USA
| | - Thomas Cronin
- Department of Biological Sciences, University of Maryland Baltimore County, Baltimore, MD 21250, USA
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28
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Bok MJ, Porter ML, Cronin TW. Ultraviolet filters in stomatopod crustaceans: diversity, ecology, and evolution. J Exp Biol 2015; 218:2055-66. [DOI: 10.1242/jeb.122036] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2015] [Accepted: 04/27/2015] [Indexed: 11/20/2022]
Abstract
Stomatopod crustaceans employ unique ultraviolet (UV) optical filters in order to tune the spectral sensitivities of their UV-sensitive photoreceptors. In the stomatopod species Neogonodactylus oerstedii, we previously found four filter types, produced by five distinct mycosporine-like amino acid pigments in the crystalline cones of their specialized midband ommatidial facets. This UV-spectral tuning array produces receptors with at least six distinct spectral sensitivities, despite expressing only two visual pigments. Here we present a broad survey of these UV filters across the stomatopod order, examining their spectral absorption properties in twenty-one species from seven families in four superfamilies. We found that UV filters are present in three of the four superfamilies, and evolutionary character reconstruction implies that at least one class of UV filter was present in the ancestor of all modern stomatopods. Additionally, postlarval stomatopods were observed to produce the UV filters simultaneously alongside development of the adult eye. The absorbance properties of the filters are consistent within a species; however, between species we found a great deal of diversity, both in the number of filters, and in their spectral absorbance characteristics. This diversity correlates with the habitat depth ranges of these species, suggesting that species living in shallow, UV-rich environments may tune their UV spectral sensitivities more aggressively. We also found additional, previously unrecognized UV filter types in the crystalline cones of the peripheral eye regions of some species, indicating the possibility for even greater stomatopod visual complexity than previously thought.
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Affiliation(s)
- Michael J. Bok
- Department of Biological Sciences, University of Maryland Baltimore County, 1000 Hilltop Circle, Baltimore, MD 21250, USA
| | - Megan L. Porter
- Department of Biological Sciences, University of Maryland Baltimore County, 1000 Hilltop Circle, Baltimore, MD 21250, USA
| | - Thomas W. Cronin
- Department of Biological Sciences, University of Maryland Baltimore County, 1000 Hilltop Circle, Baltimore, MD 21250, USA
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29
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Speiser DI, Pankey MS, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR, Patel NH, Porter ML, Protas ME, Rivera AS, Serb JM, Zigler KS, Crandall KA, Oakley TH. Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. BMC Bioinformatics 2014; 15:350. [PMID: 25407802 PMCID: PMC4255452 DOI: 10.1186/s12859-014-0350-x] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2014] [Accepted: 10/09/2014] [Indexed: 11/10/2022] Open
Abstract
Background Tools for high throughput sequencing and de novo assembly make the analysis of transcriptomes (i.e. the suite of genes expressed in a tissue) feasible for almost any organism. Yet a challenge for biologists is that it can be difficult to assign identities to gene sequences, especially from non-model organisms. Phylogenetic analyses are one useful method for assigning identities to these sequences, but such methods tend to be time-consuming because of the need to re-calculate trees for every gene of interest and each time a new data set is analyzed. In response, we employed existing tools for phylogenetic analysis to produce a computationally efficient, tree-based approach for annotating transcriptomes or new genomes that we term Phylogenetically-Informed Annotation (PIA), which places uncharacterized genes into pre-calculated phylogenies of gene families. Results We generated maximum likelihood trees for 109 genes from a Light Interaction Toolkit (LIT), a collection of genes that underlie the function or development of light-interacting structures in metazoans. To do so, we searched protein sequences predicted from 29 fully-sequenced genomes and built trees using tools for phylogenetic analysis in the Osiris package of Galaxy (an open-source workflow management system). Next, to rapidly annotate transcriptomes from organisms that lack sequenced genomes, we repurposed a maximum likelihood-based Evolutionary Placement Algorithm (implemented in RAxML) to place sequences of potential LIT genes on to our pre-calculated gene trees. Finally, we implemented PIA in Galaxy and used it to search for LIT genes in 28 newly-sequenced transcriptomes from the light-interacting tissues of a range of cephalopod mollusks, arthropods, and cubozoan cnidarians. Our new trees for LIT genes are available on the Bitbucket public repository (http://bitbucket.org/osiris_phylogenetics/pia/) and we demonstrate PIA on a publicly-accessible web server (http://galaxy-dev.cnsi.ucsb.edu/pia/). Conclusions Our new trees for LIT genes will be a valuable resource for researchers studying the evolution of eyes or other light-interacting structures. We also introduce PIA, a high throughput method for using phylogenetic relationships to identify LIT genes in transcriptomes from non-model organisms. With simple modifications, our methods may be used to search for different sets of genes or to annotate data sets from taxa outside of Metazoa. Electronic supplementary material The online version of this article (doi:10.1186/s12859-014-0350-x) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Daniel I Speiser
- Department of Ecology, Evolution, and Marine Biology, University of California Santa Barbara, Santa Barbara, CA, USA. .,Department of Biological Sciences, University of South Carolina, Columbia, SC, USA.
| | - M Sabrina Pankey
- Department of Ecology, Evolution, and Marine Biology, University of California Santa Barbara, Santa Barbara, CA, USA.
| | - Alexander K Zaharoff
- Department of Ecology, Evolution, and Marine Biology, University of California Santa Barbara, Santa Barbara, CA, USA.
| | - Barbara A Battelle
- The Whitney Laboratory for Marine Bioscience, University of Florida, St. Augustine, FL, USA.
| | - Heather D Bracken-Grissom
- Department of Biological Sciences, Florida International University-Biscayne Bay Campus, North Miami, FL, USA.
| | - Jesse W Breinholt
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA.
| | - Seth M Bybee
- Department of Biology, Brigham Young University, Provo, UT, USA.
| | - Thomas W Cronin
- Department of Biological Sciences, University of Maryland Baltimore County, Baltimore, MD, USA.
| | - Anders Garm
- Department of Biology, Marine Biological Section, University of Copenhagen, Copenhagen, Denmark.
| | - Annie R Lindgren
- Department of Biology, Portland State University, Portland, OR, USA.
| | - Nipam H Patel
- Department of Molecular and Cell Biology & Department of Integrative Biology, University of California, Berkeley, CA, USA.
| | - Megan L Porter
- Department of Biology, University of South Dakota, Vermillion, SD, USA.
| | - Meredith E Protas
- Department of Natural Sciences and Mathematics, Dominican University of California, San Rafael, CA, USA.
| | - Ajna S Rivera
- Department of Biology, University of the Pacific, Stockton, CA, USA.
| | - Jeanne M Serb
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA, USA.
| | - Kirk S Zigler
- Department of Biology, Sewanee: The University of the South, Sewanee, TN, USA.
| | - Keith A Crandall
- Computational Biology Institute, George Washington University, Ashburn, VA, USA. .,Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA.
| | - Todd H Oakley
- Department of Ecology, Evolution, and Marine Biology, University of California Santa Barbara, Santa Barbara, CA, USA.
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30
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Zaidi Q, Marshall J, Thoen H, Conway BR. Evolution of neural computations: Mantis shrimp and human color decoding. Iperception 2014; 5:492-6. [PMID: 26034560 PMCID: PMC4441025 DOI: 10.1068/i0662sas] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2014] [Revised: 08/14/2014] [Indexed: 11/08/2022] Open
Abstract
Mantis shrimp and primates both possess good color vision, but the neural implementation in the two species is very different, a reflection of the largely unrelated evolutionary lineages of these creatures. Mantis shrimp have scanning compound eyes with 12 classes of photoreceptors, and have evolved a system to decode color information at the front-end of the sensory stream. Primates have image-focusing eyes with three classes of cones, and decode color further along the visual-processing hierarchy. Despite these differences, we report a fascinating parallel between the computational strategies at the color-decoding stage in the brains of stomatopods and primates. Both species appear to use narrowly tuned cells that support interval decoding color identification.
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Affiliation(s)
- Qasim Zaidi
- Graduate Center for Vision Research, State University of New York, New York; e-mail:
| | - Justin Marshall
- Queensland Brain Institute, The University of Queensland, Brisbane, Queensland 4072, Australia; e-mail:
| | - Hanne Thoen
- Queensland Brain Institute, The University of Queensland, Brisbane, Queensland 4072, Australia; e-mail:
| | - Bevil R Conway
- Neuroscience Program, Wellesley College, Wellesley, Massachusetts; e-mail:
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31
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Jellies J. Which way is up? Asymmetric spectral input along the dorsal-ventral axis influences postural responses in an amphibious annelid. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2014; 200:923-38. [PMID: 25152938 DOI: 10.1007/s00359-014-0935-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2014] [Accepted: 08/14/2014] [Indexed: 11/24/2022]
Abstract
Medicinal leeches are predatory annelids that exhibit countershading and reside in aquatic environments where light levels might be variable. They also leave the water and must contend with terrestrial environments. Yet, leeches generally maintain a dorsal upward position despite lacking statocysts. Leeches respond visually to both green and near-ultraviolet (UV) light. I used LEDs to test the hypothesis that ventral, but not dorsal UV would evoke compensatory movements to orient the body. Untethered leeches were tested using LEDs emitting at red (632 nm), green (513 nm), blue (455 nm) and UV (372 nm). UV light evoked responses in 100 % of trials and the leeches often rotated the ventral surface away from it. Visible light evoked no or modest responses (12-15 % of trials) and no body rotation. Electrophysiological recordings showed that ventral sensilla responded best to UV, dorsal sensilla to green. Additionally, a higher order interneuron that is engaged in a variety of parallel networks responded vigorously to UV presented ventrally, and both the visible and UV responses exhibited pronounced light adaptation. These results strongly support the suggestion that a dorsal light reflex in the leech uses spectral comparisons across the dorsal-ventral axis rather than, or in addition to, luminance.
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Affiliation(s)
- John Jellies
- Department of Biological Sciences, Western Michigan University, Kalamazoo, MI, 49008, USA,
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Bok M, Porter M, Place A, Cronin T. Biological Sunscreens Tune Polychromatic Ultraviolet Vision in Mantis Shrimp. Curr Biol 2014; 24:1636-1642. [DOI: 10.1016/j.cub.2014.05.071] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2014] [Revised: 05/27/2014] [Accepted: 05/28/2014] [Indexed: 10/25/2022]
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Cronin TW, Bok MJ, Marshall NJ, Caldwell RL. Filtering and polychromatic vision in mantis shrimps: themes in visible and ultraviolet vision. Philos Trans R Soc Lond B Biol Sci 2014; 369:20130032. [PMID: 24395960 DOI: 10.1098/rstb.2013.0032] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Abstract
Stomatopod crustaceans have the most complex and diverse assortment of retinal photoreceptors of any animals, with 16 functional classes. The receptor classes are subdivided into sets responsible for ultraviolet vision, spatial vision, colour vision and polarization vision. Many of these receptor classes are spectrally tuned by filtering pigments located in photoreceptors or overlying optical elements. At visible wavelengths, carotenoproteins or similar substances are packed into vesicles used either as serial, intrarhabdomal filters or lateral filters. A single retina may contain a diversity of these filtering pigments paired with specific photoreceptors, and the pigments used vary between and within species both taxonomically and ecologically. Ultraviolet-filtering pigments in the crystalline cones serve to tune ultraviolet vision in these animals as well, and some ultraviolet receptors themselves act as birefringent filters to enable circular polarization vision. Stomatopods have reached an evolutionary extreme in their use of filter mechanisms to tune photoreception to habitat and behaviour, allowing them to extend the spectral range of their vision both deeper into the ultraviolet and further into the red.
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Affiliation(s)
- Thomas W Cronin
- Department of Biological Sciences, University of Maryland Baltimore County, , Baltimore, MD 21250, USA
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Porter ML, Speiser DI, Zaharoff AK, Caldwell RL, Cronin TW, Oakley TH. The evolution of complexity in the visual systems of stomatopods: insights from transcriptomics. Integr Comp Biol 2013; 53:39-49. [PMID: 23727979 DOI: 10.1093/icb/ict060] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
Stomatopod crustaceans have complex visual systems containing up to 16 different spectral classes of photoreceptors, more than described for any other animal. A previous molecular study of this visual system focusing on the expression of opsin genes found many more transcripts than predicted on the basis of physiology, but was unable to fully document the expressed opsin genes responsible for this diversity. Furthermore, questions remain about how other components of phototransduction cascades are involved. This study continues prior investigations by examining the molecular function of stomatopods' visual systems using new whole eye 454 transcriptome datasets from two species, Hemisquilla californiensis and Pseudosquilla ciliata. These two species represent taxonomic diversity within the order Stomatopoda, as well as variations in the anatomy and physiology of the visual system. Using an evolutionary placement algorithm to annotate the transcriptome, we identified the presence of nine components of the stomatopods' G-protein-coupled receptor (GPCR) phototransduction cascade, including two visual arrestins, subunits of the heterotrimeric G-protein, phospholipase C, transient receptor potential channels, and opsin transcripts. The set of expressed transduction genes suggests that stomatopods utilize a Gq-mediated GPCR-signaling cascade. The most notable difference in expression between the phototransduction cascades of the two species was the number of opsin contigs recovered, with 18 contigs found in retinas of H. californiensis, and 49 contigs in those of P. ciliata. Based on phylogenetic placement and fragment overlap, these contigs were estimated to represent 14 and 33 expressed transcripts, respectively. These data expand the known opsin diversity in stomatopods to clades of arthropod opsins that are sensitive to short wavelengths and ultraviolet wavelengths and confirm the results of previous studies recovering more opsin transcripts than spectrally distinct types of photoreceptors. Many of the recovered transcripts were phylogenetically placed in an evolutionary clade of crustacean opsin sequences that is rapidly expanding as the visual systems from more species are investigated. We discuss these results in relation to the emerging pattern, particularly in crustacean visual systems, of the expression of multiple opsin transcripts in photoreceptors of the same spectral class, and even in single photoreceptor cells.
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Affiliation(s)
- Megan L Porter
- Department of Biology, University of South Dakota, Vermillion, SD 57069, USA.
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Sabbah S, Troje NF, Gray SM, Hawryshyn CW. High complexity of aquatic irradiance may have driven the evolution of four-dimensional colour vision in shallow-water fish. J Exp Biol 2013; 216:1670-82. [DOI: 10.1242/jeb.079558] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Summary
Humans use three cone photoreceptor classes for colour vision, yet many birds, reptiles and shallow-water fish are tetrachromatic and use four cone classes. Screening pigments, that narrow the spectrum of photoreceptors in birds and diurnal reptiles, render visual systems with four cone classes more efficient. To date, however, the question of tetrachromacy in shallow-water fish, that, like humans, lack screening pigments, is still unsolved. We raise the possibility that tetrachromacy in fish has evolved in response to higher spectral complexity of underwater light. We compared the dimensionality of colour vision in humans and fish by examining the spectral complexity of the colour-signal reflected from objects into their eyes. Here we show that fish require four to six cone classes to reconstruct the colour-signal of aquatic objects at the accuracy level achieved by humans viewing terrestrial objects. This is because environmental light, which alters the colour-signals, is more complex and contains more spectral fluctuations underwater than on land. We further show that fish cones are better suited than human cones to detect these spectral fluctuations, suggesting that the capability of fish cones to detect high-frequency fluctuations in the colour-signal confers an advantage. Taken together, we propose that tetrachromacy in fish has evolved to enhance the reconstruction of complex colour-signals in shallow aquatic environments. Of course, shallow-water fish might possess less than four cone classes; however, this would come with the inevitable loss in accuracy of signal reconstruction.
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Weaver JC, Milliron GW, Miserez A, Evans-Lutterodt K, Herrera S, Gallana I, Mershon WJ, Swanson B, Zavattieri P, DiMasi E, Kisailus D. The Stomatopod Dactyl Club: A Formidable Damage-Tolerant Biological Hammer. Science 2012; 336:1275-80. [DOI: 10.1126/science.1218764] [Citation(s) in RCA: 521] [Impact Index Per Article: 43.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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Abstract
AbstractDifferent explanations of color vision favor different philosophical positions: Computational vision is more compatible with objectivism (the color is in the object), psychophysics and neurophysiology with subjectivism (the color is in the head). Comparative research suggests that an explanation of color must be both experientialist (unlike objectivism) and ecological (unlike subjectivism). Computational vision's emphasis on optimally “recovering” prespecified features of the environment (i.e., distal properties, independent of the sensory-motor capacities of the animal) is unsatisfactory. Conceiving of visual perception instead as the visual guidance of activity in an environment that is determined largely by that very activity suggests new directions for research.
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