Assessing temporal flux of plant hormones in stored processing potatoes using high definition accurate mass spectrometry

Can plant hormonomics be built on simple analysis? A review

The field of plant hormonomics focuses on the qualitative and quantitative analysis of the hormone complement in plant samples, akin to other omics sciences. Plant hormones, alongside primary and secondary metabolites, govern vital processes throughout a plant's lifecycle. While active hormones have received significant attention, studying all related compounds provides valuable insights into internal processes. Conventional single-class plant hormone analysis employs thorough sample purification, short analysis and triple quadrupole tandem mass spectrometry. Conversely, comprehensive hormonomics analysis necessitates minimal purification, robust and efficient separation and better-performing mass spectrometry instruments. This review summarizes the current status of plant hormone analysis methods, focusing on sample preparation, advances in chromatographic separation and mass spectrometric detection, including a discussion on internal standard selection and the potential of derivatization. Moreover, current approaches for assessing the spatiotemporal distribution are evaluated. The review touches on the legitimacy of the term plant hormonomics by exploring the current status of methods and outlining possible future trends.

Encapsulated plant growth regulators and associative microorganisms: Nature-based solutions to mitigate the effects of climate change on plants

Over the past decades, the atmospheric CO₂ concentration and global average temperature have been increasing, and this trend is projected to soon become more severe. This scenario of climate change intensifies abiotic stress factors (such as drought, flooding, salinity, and ultraviolet radiation) that threaten forest and associated ecosystems as well as crop production. These factors can negatively affect plant growth and development with a consequent reduction in plant biomass accumulation and yield, in addition to increasing plant susceptibility to biotic stresses. Recently, biostimulants have become a hotspot as an effective and sustainable alternative to alleviate the negative effects of stresses on plants. However, the majority of biostimulants have poor stability under environmental conditions, which leads to premature degradation, shortening their biological activity. To solve these bottlenecks, micro- and nano-based formulations containing biostimulant molecules and/or microorganisms are gaining attention, as they demonstrate several advantages over their conventional formulations. In this review, we focus on the encapsulation of plant growth regulators and plant associative microorganisms as a strategy to boost their application for plant protection against abiotic stresses. We also address the potential limitations and challenges faced for the implementation of this technology, as well as possibilities regarding future research.

Investigating the role of abscisic acid and its catabolites on senescence processes in green asparagus under controlled atmosphere (CA) storage regimes

Asparagus (Asparagus officinalis) is a highly perishable crop with a short postharvest life. Although some research has been done on the application of controlled atmosphere (CA), it has not been sufficiently explored and the underlying mechanisms controlling asparagus senescence processes are not well understood, restricting its potential for commercial application. The aim of this study was to investigate for the first time the link between abscisic acid (ABA) and ABA catabolites and senescence in asparagus stored under a range of different CA conditions. Two different set-ups were run in parallel; a traditional CA delivered by an International Controlled Atmosphere (ICA) system with continuous gas supply and LabPods™ fitted with sensors for real time monitoring of respiration rate (RR) and respiratory quotient (RQ) and able to retain established CA conditions with minimum gas supply requirements. The role of genetic variability was also studied by including two UK grown asparagus cultivars 'Gijnlim' and 'Jaleo' adapted for different climatic conditions. The results indicated that ABA and its catabolites were present in significantly higher concentrations in the air stored spears (control) compared to CA throughout storage, irrespective of cultivar, and were associated with accelerated senescence processes observed in control samples, such as textural changes indicative of spear toughening, discolouration, sugar depletion and asparagine accumulation. Furthermore, partial least squares regression (pls-r) applied for both cultivars, successfully differentiated samples based on O₂ and CO₂ concentrations and storage duration, both in cold storage and during shelf-life with the separation being driven primarily by ABA and its catabolites. Physiological and biochemical results indicated that all three CA conditions tested ([CA1] 2.5% O₂, 3% CO₂, [CA2] 2.5% O₂, 6% CO₂ and [CA3] 2.5% O₂, 10% CO₂) successfully retained quality parameters including texture, colour, moisture content and visual appearance longer compared to air (control); however, they did not completely suppress the development of 'tip-breakdown' (a physiological disorder also known as tip rot) towards the end of storage, which coincided with rising concentrations of phaseic acid indicating an activation of the abscisic biosynthetic and catabolic pathway. It can be concluded that CA conditions can delay senescence for at least 3-weeks (2 weeks cold storage and 1 week shelf-life), by lowering metabolic rate and respiratory quotient (RQ) within the spears compared to control, and through successfully regulating ABA biosynthetic and catabolic pathways.

Continuous Exposure to Ethylene Differentially Affects Senescence in Receptacle and Achene Tissues in Strawberry Fruit

Strawberry shelf life is limited, and little is known about the postharvest regulation of senescence in different fruit tissues. Strawberry is classified as a non-climacteric fruit, yet it is known that ethylene affects strawberry ripening. Here the effects of continuous exogenous ethylene (50 µl l^-1) were investigated in cold stored strawberry (5°C). The physiological and biochemical responses of ripe strawberry were evaluated across 6 days, together with hormonal profiles of the whole fruit and individual tissues (achenes and receptacle). Continuous exposure to ethylene induced as a first response an accumulation of abscisic acid (ABA) in the receptacle tissue, followed by an increase in CO₂ production. Ethylene also elicited sucrose hydrolysis and malic acid catabolism, with the major effect seen after 4 days of ethylene exposure. Additionally, accumulation of phenolics (epicatechin and chlorogenic acid) were also observed in ethylene treated strawberry. Achenes did not exhibit a response to ethylene, yet catabolism of both ABA and auxins increased by two thirds during air storage. In contrast, ethylene induced ABA accumulation in the receptacle tissue without ABA catabolism being affected. This hormonal disequilibrium in response to ethylene between the two tissues was maintained during storage, and therefore might be the precursor for the following biochemical variations reported during storage.

Seasonal and temporal changes during storage affect quality attributes of green asparagus

Asparagus is a perennial crop with a short UK harvest season. Methods to extend the storage life of asparagus have proven difficult. To gain insight into the physiological (viz. colour, respiration rate, cutting energy, and stiffness measured using laser Doppler vibrometry), and biochemical (viz. sugars, ascorbic acid, and abscisic acid and its catabolites) changes throughout the UK season, two cultivars were harvested weekly and stored under shelf life conditions (7 °C). Results were compared to spears (plus one additional cultivar) cold stored (1 °C) for three weeks followed by one week of shelf life. Concentrations of sugar, abscisic acid (ABA) and catabolites at harvest were subject to seasonal variation, directly affecting storage potential. A generalised linear model with stepwise feature selection was applied to select the most important parameters for the prediction of total sugars and phaseic acid (PA). More favourable growing conditions at harvest increased sugars and lowered ABA content and catabolites, which coincided with better maintenance of spear quality during storage; including maintaining textural characteristics. Storage time had a negative impact on spear texture and sugar content, with cutting energy increasing and stiffness decreasing both during cold storage and subsequent shelf life. A partial shift in sugar biosynthesis occurred during shelf life increasing sucrose concentrations. Results suggest that the temporal flux in ABA and catabolites, and individual sugars could be used to model storage potential of asparagus spears.

Untargeted Metabolomics Analytical Strategy Based on Liquid Chromatography/Electrospray Ionization Linear Ion Trap Quadrupole/Orbitrap Mass Spectrometry for Discovering New Polyphenol Metabolites in Human Biofluids after Acute Ingestion of Vaccinium myrtillus Berry Supplement

In this work, liquid chromatography, coupled with an electrospray ionization hybrid linear ion trap quadrupole/Orbitrap mass spectrometry, has been used to accurately identify polyphenol metabolites in human serum and urine after acute ingestion of a V. myrtillus berry supplement. The supplement was obtained by cryo-milling of bilberries, which were freeze-dried within 1 week after their harvesting, to maintain the berry native composition. Thirty-six derivatives of benzoic acids, hydroxyhippuric acids, cinnamic acids, phenylpropionic acids, phenylvaleric acids, phenylpentenoic acids and abscisic acid, together with two berry-native anthocyanins, one flavonol metabolite and two catechol derivatives were putatively identified in the investigated biofluids. The annotated compounds included 13 metabolites, among glucuronides and sulphates of phenylvaleric and phenylpentenoic acids, which have been identified for the first time in human biofluids after ingestion of V. myrtillus berries. It should be emphasized that the presence of phenylvaleric and phenylpentenoic acid derivatives is in agreement with their origin from fruit native flavanol monomers and oligomers, which are widely distributed in Vaccinium berries, but usually overlooked in metabolomics studies regarding bilberry. The identification of these compounds confirmed the key-role of untargeted metabolomics approach in the discovery of new metabolites which could be biologically active. Graphical Abstract.

Water deficit and abscisic acid treatments increase the expression of a glucomannan mannosyltransferase gene (GMMT) in Aloe vera Burm. F

The main polysaccharide of the gel present in the leaves of or Aloe vera Burm.F., (Aloe barbadensis Miller) a xerophytic crassulacean acid metabolism (CAM) plant, is an acetylated glucomannan named acemannan. This polysaccharide is responsible for the succulence of the plant, helping it to retain water. In this study we determined using polysaccharide analysis by carbohydrate gel electrophoresis (PACE) that the acemannan is a glucomannan without galactose side branches. We also investigated the expression of the gene responsible for acemannan backbone synthesis, encoding a glucomannan mannosyltransferase (GMMT, EC 2.4.1.32), since there are no previous reports on GMMT expression under water stress in general and specifically in Aloe vera. It was found by in silico analyses that the GMMT gene belongs to the cellulose synthase-like A type-9 (CSLA9) subfamily. Using RT-qPCR it was found that the expression of GMMT increased significantly in Aloe vera plants subjected to water stress. This expression correlates with an increase of endogenous ABA levels, suggesting that the gene expression could be regulated by ABA. To corroborate this hypothesis, exogenous ABA was applied to non-water-stressed plants, resulting in a significant increase of GMMT expression after 48 h of ABA treatment.

Electrochemical aptasensors for zeatin detection based on MoS2 nanosheets and enzymatic signal amplification

A simple and sensitive electrochemical aptasensor was constructed for zeatin detection, where MoS2 nanosheets were used as the immobilization matrix for gold nanoparticles (AuNPs), and AuNPs were employed as the immobilization matrix to probe DNA. After the aptamer DNA and assist DNA hybridized with probe DNA, Y-type DNA can be formed with two biotins at the terminals of aptamer DNA. Then, avidin modified alkaline phosphatase (Avidin-ALP) can be further modified on the electrode surface through the biotin and avidin interaction. Under the catalytic effect of ALP, p-nitrophenylphosphate disodium (PNPP) can be hydrolyzed to produce p-nitrophenol (PNP). However, in the presence of zeatin, the formed Y-type DNA can be destroyed due to the formation of the zeatin-aptamer conjugate, which further reduces the amount of PNP and leads to the decrease of the oxidation signal of PNP. Under the optimum conditions, the change of the oxidation peak current of PNP was inversely proportional to the logarithm value of zeatin concentration in the range of 50 pM-50 nM. The detection limit was calculated to be 16.6 pM. This electrochemical method also showed good detection selectivity and stability. The potential applicability of this method was proved by detecting zeatin in real samples.

Down-regulation of PvTRX1h increases nodule number and affects auxin, starch, and metabolic fingerprints in the common bean (Phaseolus vulgaris L.)

The legume-rhizobium symbiotic relationship has been widely studied and characterized. However, little information is available about the role of histone lysine methyltransferases in the legume-rhizobium interaction and in the formation of nitrogen-fixing nodules in the common bean. Thus, this study aimed to gain a better understanding of the epigenetic control of nodulation in the common bean. Specifically, we studied the role of PvTRX1h, a histone lysine methyltransferase coding gene, in nodule development and auxin biosynthesis. Through a reverse genetics approach, we generated common bean composite plants to knock-down PvTRX1h expression. Here we found that the down-regulation of PvTRX1h increased the number of nodules per plant, but reduced the number of colony-forming units recovered from nodules. Genes coding for enzymes involved in the synthesis of the indole-3-acetic acid were up-regulated, as was the concentration of this hormone. In addition, PvTRX1h down-regulation altered starch accumulation as determined by the number of amyloplasts per nodule. Metabolic fingerprinting by direct liquid introduction-electrospray ionization-mass spectrometry (DLI-ESI-MS) revealed that the root nodules were globally affected by PvTRX1h down-regulation. Therefore, PvTRX1h likely acts through chromatin histone modifications that alter the auxin signaling network to determine bacterial colonization, nodule number, starch accumulation, hormone levels, and cell proliferation.

Assuring Potato Tuber Quality during Storage: A Future Perspective

Potatoes represent an important staple food crop across the planet. Yet, to maintain tuber quality and extend availability, there is a necessity to store tubers for long periods often using industrial-scale facilities. In this context, preserving potato quality is pivotal for the seed, fresh and processing sectors. The industry has always innovated and invested in improved post-harvest storage. However, the pace of technological change has and will continue to increase. For instance, more stringent legislation and changing consumer attitudes have driven renewed interest in creating alternative or complementary post-harvest treatments to traditional chemically reliant sprout suppression and disease control. Herein, the current knowledge on biochemical factors governing dormancy, the use of chlorpropham (CIPC) as well as existing and chemical alternatives, and the effects of pre- and post-harvest factors to assure potato tuber quality is reviewed. Additionally, the role of genomics as a future approach to potato quality improvement is discussed. Critically, and through a more industry targeted research, a better mechanistic understanding of how the pre-harvest environment influences tuber quality and the factors which govern dormancy transition should lead to a paradigm shift in how sustainable storage can be achieved.

Morphological Characteristics, Anatomical Structure, and Gene Expression: Novel Insights into Cytokinin Accumulation during Carrot Growth and Development

Cytokinins have been implicated in normal plant growth and development. These bioactive molecules are essential for cell production and expansion in higher plants. Carrot is an Apiaceae vegetable with great value and undergoes significant size changes over the process of plant growth. However, cytokinin accumulation and its potential roles in carrot growth have not been elucidated. To address this problem, carrot plants at five stages were collected, and morphological and anatomical characteristics and expression profiles of cytokinin-related genes were determined. During carrot growth and development, cytokinin levels were the highest at the second stage in the roots, whereas relatively stable levels were observed in the petioles and leaves. DcCYP735A2 showed high expression at stage 2 in the roots, which may contribute largely to the higher cytokinin level at this stage. However, expression of most metabolic genes did not follow a pattern similar to that of cytokinin accumulation, indicating that cytokinin biosynthesis was regulated through a complex network. Genes involved in cytokinin signal perception and transduction were also integrated to normal plant growth and development. The results from the present work suggested that cytokinins may regulate plant growth in a stage-dependent manner. Our work would shed novel insights into cytokinin accumulation and its potential roles during carrot growth. Further studies regarding carrot cytokinins may be achieved by modification of the genes involved in cytokinin biosynthesis, inactivation, and perception.

Morphological characteristics, anatomical structure, and gene expression: novel insights into gibberellin biosynthesis and perception during carrot growth and development

Gibberellins (GAs) are considered potentially important regulators of cell elongation and expansion in plants. Carrot undergoes significant alteration in organ size during its growth and development. However, the molecular mechanisms underlying gibberellin accumulation and perception during carrot growth and development remain unclear. In this study, five stages of carrot growth and development were investigated using morphological and anatomical structural techniques. Gibberellin levels in leaf, petiole, and taproot tissues were also investigated for all five stages. Gibberellin levels in the roots initially increased and then decreased, but these levels were lower than those in the petioles and leaves. Genes involved in gibberellin biosynthesis and signaling were identified from the carrotDB, and their expression was analyzed. All of the genes were evidently responsive to carrot growth and development, and some of them showed tissue-specific expression. The results suggested that gibberellin level may play a vital role in carrot elongation and expansion. The relative transcription levels of gibberellin pathway-related genes may be the main cause of the different bioactive GAs levels, thus exerting influences on gibberellin perception and signals. Carrot growth and development may be regulated by modification of the genes involved in gibberellin biosynthesis, catabolism, and perception.