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For: Sharma AK, Sommerfeld K, Bullerjahn GS, Matteson AR, Wilhelm SW, Jezbera J, Brandt U, Doolittle WF, Hahn MW. Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria. ISME J 2009;3:726-37. [DOI: 10.1038/ismej.2009.13] [Citation(s) in RCA: 101] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Number Cited by Other Article(s)
1
Liu X, Pan B, Liu X, Han X, Zhu P, Li G, Li D. Trophic level plays an enhanced role in shaping microbiota structure and assembly in lakes with decreased salinity on the Qinghai-Tibet and Inner Mongolia Plateaus. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;923:171316. [PMID: 38423321 DOI: 10.1016/j.scitotenv.2024.171316] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Revised: 02/25/2024] [Accepted: 02/25/2024] [Indexed: 03/02/2024]
2
Zepernick BN, Chase EE, Denison ER, Gilbert NE, Truchon AR, Frenken T, Cody WR, Martin RM, Chaffin JD, Bullerjahn GS, McKay RML, Wilhelm SW. Declines in ice cover are accompanied by light limitation responses and community change in freshwater diatoms. THE ISME JOURNAL 2024;18:wrad015. [PMID: 38366077 PMCID: PMC10939406 DOI: 10.1093/ismejo/wrad015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Revised: 12/27/2023] [Accepted: 12/28/2023] [Indexed: 02/18/2024]
3
Chiriac MC, Haber M, Salcher MM. Adaptive genetic traits in pelagic freshwater microbes. Environ Microbiol 2023;25:606-641. [PMID: 36513610 DOI: 10.1111/1462-2920.16313] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2022] [Accepted: 12/12/2022] [Indexed: 12/15/2022]
4
He S, Linz AM, Stevens SLR, Tran PQ, Moya-Flores F, Oyserman BO, Dwulit-Smith JR, Forest KT, McMahon KD. Diversity, distribution, and expression of opsin genes in freshwater lakes. Mol Ecol 2023;32:2798-2817. [PMID: 36799010 DOI: 10.1111/mec.16891] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Revised: 01/28/2023] [Accepted: 02/14/2023] [Indexed: 02/18/2023]
5
Lang-Yona N, Alster A, Cummings D, Freiman Z, Kaplan-Levy R, Lupu A, Malinsky-Rushansky N, Ninio S, Sukenik A, Viner-Mozzini Y, Zohary T. Gloeotrichia pisum in Lake Kinneret: A successful epiphytic cyanobacterium. JOURNAL OF PHYCOLOGY 2023;59:97-110. [PMID: 36371652 DOI: 10.1111/jpy.13301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Accepted: 09/29/2022] [Indexed: 06/16/2023]
6
Selvaraj MK, Thakur A, Kumar M, Pinnaka AK, Suri CR, Siddhardha B, Elumalai SP. Ion-pumping microbial rhodopsin protein classification by machine learning approach. BMC Bioinformatics 2023;24:29. [PMID: 36707759 PMCID: PMC9881276 DOI: 10.1186/s12859-023-05138-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2022] [Accepted: 01/04/2023] [Indexed: 01/28/2023]  Open
7
Iniesto M, Moreira D, Benzerara K, Reboul G, Bertolino P, Tavera R, López‐García P. Planktonic microbial communities from microbialite-bearing lakes sampled along a salinity-alkalinity gradient. LIMNOLOGY AND OCEANOGRAPHY 2022;67:2718-2733. [PMID: 37064594 PMCID: PMC10087431 DOI: 10.1002/lno.12233] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/20/2022] [Revised: 07/12/2022] [Accepted: 09/04/2022] [Indexed: 06/19/2023]
8
Zufiaurre A, Felip M, Camarero L, Sala-Faig M, Juhanson J, Bonilla-Rosso G, Hallin S, Catalan J. Bacterioplankton seasonality in deep high-mountain lakes. Front Microbiol 2022;13:935378. [PMID: 36187988 PMCID: PMC9519062 DOI: 10.3389/fmicb.2022.935378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Accepted: 08/08/2022] [Indexed: 12/04/2022]  Open
9
Shi P, Wang H, Feng M, Cheng H, Yang Q, Yan Y, Xu J, Zhang M. Bacterial Metabolic Potential in Response to Climate Warming Alters the Decomposition Process of Aquatic Plant Litter-In Shallow Lake Mesocosms. Microorganisms 2022;10:1327. [PMID: 35889044 PMCID: PMC9316218 DOI: 10.3390/microorganisms10071327] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Revised: 06/28/2022] [Accepted: 06/28/2022] [Indexed: 02/04/2023]  Open
10
Biological Microbial Interactions from Cooccurrence Networks in a High Mountain Lacustrine District. mSphere 2022;7:e0091821. [PMID: 35642514 PMCID: PMC9241510 DOI: 10.1128/msphere.00918-21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
11
Piwosz K, Villena-Alemany C, Mujakić I. Photoheterotrophy by aerobic anoxygenic bacteria modulates carbon fluxes in a freshwater lake. THE ISME JOURNAL 2022;16:1046-1054. [PMID: 34802055 PMCID: PMC8941148 DOI: 10.1038/s41396-021-01142-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Revised: 10/11/2021] [Accepted: 10/12/2021] [Indexed: 01/04/2023]
12
Hahn MW, Pitt A, Koll U, Schmidt J, Maresca JA, Neumann-Schaal M. Aurantimicrobium photophilum sp. nov., a non-photosynthetic bacterium adjusting its metabolism to the diurnal light cycle and reclassification of Cryobacterium mesophilum as Terrimesophilobacter mesophilus gen. nov., comb. nov. Int J Syst Evol Microbiol 2021;71. [PMID: 34431766 DOI: 10.1099/ijsem.0.004975] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
13
Pitt A, Schmidt J, Koll U, Hahn MW. Aquiluna borgnonia gen. nov., sp. nov., a member of a Microbacteriaceae lineage of freshwater bacteria with small genome sizes. Int J Syst Evol Microbiol 2021;71. [PMID: 33999796 DOI: 10.1099/ijsem.0.004825] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]  Open
14
Lipko IA, Belykh OI. Environmental Features of Freshwater Planktonic Actinobacteria. CONTEMP PROBL ECOL+ 2021. [DOI: 10.1134/s1995425521020074] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
15
Chuon K, Kim SY, Meas S, Shim JG, Cho SG, Kang KW, Kim JH, Cho HS, Jung KH. Assembly of Natively Synthesized Dual Chromophores Into Functional Actinorhodopsin. Front Microbiol 2021;12:652328. [PMID: 33995310 PMCID: PMC8113403 DOI: 10.3389/fmicb.2021.652328] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2021] [Accepted: 04/06/2021] [Indexed: 12/18/2022]  Open
16
Galachyants AD, Krasnopeev AY, Podlesnaya GV, Potapov SA, Sukhanova EV, Tikhonova IV, Zimens EA, Kabilov MR, Zhuchenko NA, Gorshkova AS, Suslova MY, Belykh OI. Diversity of Aerobic Anoxygenic Phototrophs and Rhodopsin-Containing Bacteria in the Surface Microlayer, Water Column and Epilithic Biofilms of Lake Baikal. Microorganisms 2021;9:842. [PMID: 33920057 PMCID: PMC8071047 DOI: 10.3390/microorganisms9040842] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Revised: 04/10/2021] [Accepted: 04/12/2021] [Indexed: 12/31/2022]  Open
17
Gweon HS, Bowes MJ, Moorhouse HL, Oliver AE, Bailey MJ, Acreman MC, Read DS. Contrasting community assembly processes structure lotic bacteria metacommunities along the river continuum. Environ Microbiol 2021;23:484-498. [PMID: 33258525 PMCID: PMC7898806 DOI: 10.1111/1462-2920.15337] [Citation(s) in RCA: 37] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Revised: 11/03/2020] [Accepted: 11/24/2020] [Indexed: 01/26/2023]
18
Genomes of the "Candidatus Actinomarinales" Order: Highly Streamlined Marine Epipelagic Actinobacteria. mSystems 2020;5:5/6/e01041-20. [PMID: 33323418 PMCID: PMC7771536 DOI: 10.1128/msystems.01041-20] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]  Open
19
Metabarcoding Analysis of Bacterial Communities Associated with Media Grow Bed Zones in an Aquaponic System. Int J Microbiol 2020;2020:8884070. [PMID: 33061984 PMCID: PMC7547338 DOI: 10.1155/2020/8884070] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Accepted: 09/21/2020] [Indexed: 12/14/2022]  Open
20
Jankowiak JG, Gobler CJ. The Composition and Function of Microbiomes Within Microcystis Colonies Are Significantly Different Than Native Bacterial Assemblages in Two North American Lakes. Front Microbiol 2020;11:1016. [PMID: 32547511 PMCID: PMC7270213 DOI: 10.3389/fmicb.2020.01016] [Citation(s) in RCA: 44] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Accepted: 04/24/2020] [Indexed: 11/21/2022]  Open
21
Kwon SK, Jun SH, Kim JF. Omega Rhodopsins: A Versatile Class of Microbial Rhodopsins. J Microbiol Biotechnol 2020;30:633-641. [PMID: 32482928 PMCID: PMC9728251 DOI: 10.4014/jmb.1912.12010] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2019] [Accepted: 03/27/2020] [Indexed: 12/15/2022]
22
Maresca JA, Keffer JL, Hempel PP, Polson SW, Shevchenko O, Bhavsar J, Powell D, Miller KJ, Singh A, Hahn MW. Light Modulates the Physiology of Nonphototrophic Actinobacteria. J Bacteriol 2019;201:e00740-18. [PMID: 30692175 PMCID: PMC6482932 DOI: 10.1128/jb.00740-18] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2018] [Accepted: 01/09/2019] [Indexed: 11/20/2022]  Open
23
Culturing the ubiquitous freshwater actinobacterial acI lineage by supplying a biochemical 'helper' catalase. ISME JOURNAL 2019;13:2252-2263. [PMID: 31073214 DOI: 10.1038/s41396-019-0432-x] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2018] [Revised: 03/18/2019] [Accepted: 04/24/2019] [Indexed: 01/21/2023]
24
Dwulit-Smith JR, Hamilton JJ, Stevenson DM, He S, Oyserman BO, Moya-Flores F, Garcia SL, Amador-Noguez D, McMahon KD, Forest KT. acI Actinobacteria Assemble a Functional Actinorhodopsin with Natively Synthesized Retinal. Appl Environ Microbiol 2018;84:e01678-18. [PMID: 30315080 PMCID: PMC6275354 DOI: 10.1128/aem.01678-18] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2018] [Accepted: 10/08/2018] [Indexed: 01/08/2023]  Open
25
Maresca JA, Miller KJ, Keffer JL, Sabanayagam CR, Campbell BJ. Distribution and Diversity of Rhodopsin-Producing Microbes in the Chesapeake Bay. Appl Environ Microbiol 2018;84:e00137-18. [PMID: 29703736 PMCID: PMC6007120 DOI: 10.1128/aem.00137-18] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2018] [Accepted: 04/23/2018] [Indexed: 01/09/2023]  Open
26
Pushkarev A, Inoue K, Larom S, Flores-Uribe J, Singh M, Konno M, Tomida S, Ito S, Nakamura R, Tsunoda SP, Philosof A, Sharon I, Yutin N, Koonin EV, Kandori H, Béjà O. A distinct abundant group of microbial rhodopsins discovered using functional metagenomics. Nature 2018;558:595-599. [PMID: 29925949 PMCID: PMC11128463 DOI: 10.1038/s41586-018-0225-9] [Citation(s) in RCA: 149] [Impact Index Per Article: 24.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2018] [Accepted: 05/04/2018] [Indexed: 11/09/2022]
27
Pushkarev A, Hevroni G, Roitman S, Shim JG, Choi A, Jung KH, Béjà O. The Use of a Chimeric Rhodopsin Vector for the Detection of New Proteorhodopsins Based on Color. Front Microbiol 2018;9:439. [PMID: 29593685 PMCID: PMC5859045 DOI: 10.3389/fmicb.2018.00439] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2017] [Accepted: 02/26/2018] [Indexed: 11/20/2022]  Open
28
Zheng Q, Wang Y, Xie R, Lang AS, Liu Y, Lu J, Zhang X, Sun J, Suttle CA, Jiao N. Dynamics of Heterotrophic Bacterial Assemblages within Synechococcus Cultures. Appl Environ Microbiol 2018;84:e01517-17. [PMID: 29150500 PMCID: PMC5772231 DOI: 10.1128/aem.01517-17] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2017] [Accepted: 11/02/2017] [Indexed: 02/01/2023]  Open
29
Cabello-Yeves PJ, Zemskaya TI, Rosselli R, Coutinho FH, Zakharenko AS, Blinov VV, Rodriguez-Valera F. Genomes of Novel Microbial Lineages Assembled from the Sub-Ice Waters of Lake Baikal. Appl Environ Microbiol 2018;84:e02132-17. [PMID: 29079621 PMCID: PMC5734018 DOI: 10.1128/aem.02132-17] [Citation(s) in RCA: 57] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2017] [Accepted: 10/19/2017] [Indexed: 11/20/2022]  Open
30
Tahon G, Willems A. Isolation and characterization of aerobic anoxygenic phototrophs from exposed soils from the Sør Rondane Mountains, East Antarctica. Syst Appl Microbiol 2017;40:357-369. [DOI: 10.1016/j.syapm.2017.05.007] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2017] [Revised: 05/15/2017] [Accepted: 05/16/2017] [Indexed: 12/24/2022]
31
Lin G, Sun F, Wang C, Zhang L, Zhang X. Assessment of the effect of Enteromorpha prolifera on bacterial community structures in aquaculture environment. PLoS One 2017;12:e0179792. [PMID: 28742878 PMCID: PMC5526538 DOI: 10.1371/journal.pone.0179792] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2017] [Accepted: 06/05/2017] [Indexed: 11/18/2022]  Open
32
Pernthaler J. Competition and niche separation of pelagic bacteria in freshwater habitats. Environ Microbiol 2017;19:2133-2150. [PMID: 28370850 DOI: 10.1111/1462-2920.13742] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2016] [Revised: 03/19/2017] [Accepted: 03/23/2017] [Indexed: 11/29/2022]
33
Microbial communities of aquatic environments on Heard Island characterized by pyrotag sequencing and environmental data. Sci Rep 2017;7:44480. [PMID: 28290555 PMCID: PMC5349573 DOI: 10.1038/srep44480] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2016] [Accepted: 02/09/2017] [Indexed: 12/23/2022]  Open
34
Li Z, Lu L, Guo J, Yang J, Zhang J, He B, Xu L. Responses of spatial-temporal dynamics of bacterioplankton community to large-scale reservoir operation: a case study in the Three Gorges Reservoir, China. Sci Rep 2017;7:42469. [PMID: 28211884 PMCID: PMC5304162 DOI: 10.1038/srep42469] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2016] [Accepted: 01/11/2017] [Indexed: 02/01/2023]  Open
35
Kang I, Kim S, Islam MR, Cho JC. The first complete genome sequences of the acI lineage, the most abundant freshwater Actinobacteria, obtained by whole-genome-amplification of dilution-to-extinction cultures. Sci Rep 2017;7:42252. [PMID: 28186143 PMCID: PMC5301498 DOI: 10.1038/srep42252] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2016] [Accepted: 01/06/2017] [Indexed: 02/07/2023]  Open
36
Tahon G, Tytgat B, Willems A. Diversity of Phototrophic Genes Suggests Multiple Bacteria May Be Able to Exploit Sunlight in Exposed Soils from the Sør Rondane Mountains, East Antarctica. Front Microbiol 2016;7:2026. [PMID: 28066352 PMCID: PMC5165242 DOI: 10.3389/fmicb.2016.02026] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2016] [Accepted: 12/02/2016] [Indexed: 01/10/2023]  Open
37
Feldman TB, Smitienko OA, Shelaev IV, Gostev FE, Nekrasova OV, Dolgikh DA, Nadtochenko VA, Kirpichnikov MP, Ostrovsky MA. Femtosecond spectroscopic study of photochromic reactions of bacteriorhodopsin and visual rhodopsin. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY. B, BIOLOGY 2016;164:296-305. [PMID: 27723489 DOI: 10.1016/j.jphotobiol.2016.09.041] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2016] [Revised: 09/29/2016] [Accepted: 09/30/2016] [Indexed: 11/16/2022]
38
Okazaki Y, Nakano SI. Vertical partitioning of freshwater bacterioplankton community in a deep mesotrophic lake with a fully oxygenated hypolimnion (Lake Biwa, Japan). ENVIRONMENTAL MICROBIOLOGY REPORTS 2016;8:780-788. [PMID: 27402328 DOI: 10.1111/1758-2229.12439] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2016] [Accepted: 06/20/2016] [Indexed: 05/03/2023]
39
Nakamura S, Kikukawa T, Tamogami J, Kamiya M, Aizawa T, Hahn MW, Ihara K, Kamo N, Demura M. Photochemical characterization of actinorhodopsin and its functional existence in the natural host. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2016;1857:1900-1908. [PMID: 27659506 DOI: 10.1016/j.bbabio.2016.09.006] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 04/21/2016] [Revised: 09/13/2016] [Accepted: 09/17/2016] [Indexed: 11/29/2022]
40
Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology. Microbiol Mol Biol Rev 2016;80:929-54. [PMID: 27630250 DOI: 10.1128/mmbr.00003-16] [Citation(s) in RCA: 112] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
41
Eronen-Rasimus E, Piiparinen J, Karkman A, Lyra C, Gerland S, Kaartokallio H. Bacterial communities in Arctic first-year drift ice during the winter/spring transition. ENVIRONMENTAL MICROBIOLOGY REPORTS 2016;8:527-535. [PMID: 27264318 DOI: 10.1111/1758-2229.12428] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
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Brindefalk B, Ekman M, Ininbergs K, Dupont CL, Yooseph S, Pinhassi J, Bergman B. Distribution and expression of microbial rhodopsins in the Baltic Sea and adjacent waters. Environ Microbiol 2016;18:4442-4455. [DOI: 10.1111/1462-2920.13407] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2016] [Accepted: 06/06/2016] [Indexed: 12/27/2022]
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Complete Genome Sequence of Aurantimicrobium minutum Type Strain KNCT, a Planktonic Ultramicrobacterium Isolated from River Water. GENOME ANNOUNCEMENTS 2016;4:4/3/e00616-16. [PMID: 27365350 PMCID: PMC4929513 DOI: 10.1128/genomea.00616-16] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Albarracín VH, Kraiselburd I, Bamann C, Wood PG, Bamberg E, Farias ME, Gärtner W. Functional Green-Tuned Proteorhodopsin from Modern Stromatolites. PLoS One 2016;11:e0154962. [PMID: 27187791 PMCID: PMC4871484 DOI: 10.1371/journal.pone.0154962] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2016] [Accepted: 04/21/2016] [Indexed: 11/18/2022]  Open
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Maresca JA, Keffer JL, Miller KJ. Biochemical Analysis of Microbial Rhodopsins. ACTA ACUST UNITED AC 2016;41:1F.4.1-1F.4.18. [PMID: 27153387 DOI: 10.1002/cpmc.5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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Ye Q, Liu J, Du J, Zhang J. Bacterial Diversity in Submarine Groundwater along the Coasts of the Yellow Sea. Front Microbiol 2016;6:1519. [PMID: 26779172 PMCID: PMC4705239 DOI: 10.3389/fmicb.2015.01519] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2015] [Accepted: 12/17/2015] [Indexed: 01/17/2023]  Open
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Ricão Canelhas M, Eiler A, Bertilsson S. Are freshwater bacterioplankton indifferent to variable types of amino acid substrates? FEMS Microbiol Ecol 2016;92:fiw005. [PMID: 26738554 DOI: 10.1093/femsec/fiw005] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/04/2016] [Indexed: 11/13/2022]  Open
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Hsu MF, Fu HY, Cai CJ, Yi HP, Yang CS, Wang AHJ. Structural and Functional Studies of a Newly Grouped Haloquadratum walsbyi Bacteriorhodopsin Reveal the Acid-resistant Light-driven Proton Pumping Activity. J Biol Chem 2015;290:29567-77. [PMID: 26483542 PMCID: PMC4705956 DOI: 10.1074/jbc.m115.685065] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2015] [Indexed: 11/23/2022]  Open
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Boeuf D, Audic S, Brillet-Guéguen L, Caron C, Jeanthon C. MicRhoDE: a curated database for the analysis of microbial rhodopsin diversity and evolution. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 2015;2015:bav080. [PMID: 26286928 PMCID: PMC4539915 DOI: 10.1093/database/bav080] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/16/2015] [Accepted: 07/25/2015] [Indexed: 11/12/2022]
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Harris A, Ljumovic M, Bondar AN, Shibata Y, Ito S, Inoue K, Kandori H, Brown LS. A new group of eubacterial light-driven retinal-binding proton pumps with an unusual cytoplasmic proton donor. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2015;1847:1518-29. [PMID: 26260121 DOI: 10.1016/j.bbabio.2015.08.003] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2015] [Revised: 08/05/2015] [Accepted: 08/05/2015] [Indexed: 10/23/2022]
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