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Marks JH, Bai X, Nikolayev AA, Gong Q, Zhu C, Kleimeier NF, Turner AM, Singh SK, Wang J, Yang J, Pan Y, Yang T, Mebel AM, Kaiser RI. Methanetriol─Formation of an Impossible Molecule. J Am Chem Soc 2024; 146:12174-12184. [PMID: 38629886 DOI: 10.1021/jacs.4c02637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/02/2024]
Abstract
Orthocarboxylic acids─organic molecules carrying three hydroxyl groups at the same carbon atom─have been distinguished as vital reactive intermediates by the atmospheric science and physical (organic) chemistry communities as transients in the atmospheric aerosol cycle. Predicted short lifetimes and their tendency to dehydrate to a carboxylic acid, free orthocarboxylic acids, signify one of the most elusive classes of organic reactive intermediates, with even the simplest representative methanetriol (CH(OH)3)─historically known as orthoformic acid─not previously been detected experimentally. Here, we report the first synthesis of the previously elusive methanetriol molecule in low-temperature mixed methanol (CH3OH) and molecular oxygen (O2) ices subjected to energetic irradiation. Supported by electronic structure calculations, methanetriol was identified in the gas phase upon sublimation via isomer-selective photoionization reflectron time-of-flight mass spectrometry combined with isotopic substitution studies and the detection of photoionization fragments. The first synthesis and detection of methanetriol (CH(OH)3) reveals its gas-phase stability as supported by a significant barrier hindering unimolecular decomposition. These findings progress our fundamental understanding of the chemistry and chemical bonding of methanetriol, hydroxyperoxymethane (CH3OOOH), and hydroxyperoxymethanol (CH2(OH)OOH), which are all prototype molecules in the oxidation chemistry of the atmosphere.
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Affiliation(s)
- Joshua H Marks
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
| | - Xilin Bai
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai 200062, P. R. China
| | | | - Qi'ang Gong
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai 200062, P. R. China
| | - Cheng Zhu
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
| | - N Fabian Kleimeier
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
| | - Andrew M Turner
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
| | - Santosh K Singh
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
| | - Jia Wang
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
| | - Jiuzhong Yang
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, P. R. China
| | - Yang Pan
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, P. R. China
| | - Tao Yang
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai 200062, P. R. China
- Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, Shanxi 030006, P. R. China
| | - Alexander M Mebel
- Department of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, United States
| | - Ralf I Kaiser
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, Hawaii 96822, United States
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2
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Xue Q, Jiao Z, Pan W, Liu X, Fu J, Zhang A. Multiscale computational simulation of pollutant behavior at water interfaces. WATER RESEARCH 2024; 250:121043. [PMID: 38154340 DOI: 10.1016/j.watres.2023.121043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2023] [Revised: 12/12/2023] [Accepted: 12/18/2023] [Indexed: 12/30/2023]
Abstract
The investigation of pollutant behavior at water interfaces is critical to understand pollution in aquatic systems. Computational methods allow us to overcome the limitations of experimental analysis, delivering valuable insights into the chemical mechanisms and structural characteristics of pollutant behavior at interfaces across a range of scales, from microscopic to mesoscopic. Quantum mechanics, all-atom molecular dynamics simulations, coarse-grained molecular dynamics simulations, and dissipative particle dynamics simulations represent diverse molecular interaction calculation methods that can effectively model pollutant behavior at environmental interfaces from atomic to mesoscopic scales. These methods provide a rich variety of information on pollutant interactions with water surfaces. This review synthesizes the advancements in applying typical computational methods to the formation, adsorption, binding, and catalytic conversion of pollutants at water interfaces. By drawing on recent advancements, we critically examine the current challenges and offer our perspective on future directions. This review seeks to advance our understanding of computational techniques for elucidating pollutant behavior at water interfaces, a critical aspect of water research.
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Affiliation(s)
- Qiao Xue
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Zhiyue Jiao
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Wenxiao Pan
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Xian Liu
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Jianjie Fu
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; School of Environment, Hangzhou Institute for Advanced Study, UCAS, Hangzhou 310024, China; Institute of Environment and Health, Jianghan University, Wuhan 430056, China.
| | - Aiqian Zhang
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China; School of Environment, Hangzhou Institute for Advanced Study, UCAS, Hangzhou 310024, China; Institute of Environment and Health, Jianghan University, Wuhan 430056, China.
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3
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Nathanael JG, Yuan B, Hall CR, Smith TA, Wille U. Damage of amino acids by aliphatic peroxyl radicals: a kinetic and computational study. Org Biomol Chem 2023; 21:2390-2397. [PMID: 36857623 DOI: 10.1039/d2ob02302d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/24/2023]
Abstract
Absolute second-order rate coefficients for the reaction of the N- and C-protected amino acids tyrosine (Tyr), tryptophan (Trp), methionine (Met) and proline (Pro) with triethylamine-derived aliphatic peroxyl radical TEAOO˙, which was used as a model for lipid peroxyl radicals, were determined using laser flash photolysis. For Ac-Tyr-OMe a rate coefficient of 1.4 × 104 M-1 s-1 was obtained, whereas the reactions with Ac-Trp-OMe and Ac-Met-OMe were slower by a factor of 4 and 6, respectively. For the reaction with Ac-Pro-OMe only an upper value of 103 M-1 s-1 could be determined, suggesting that Pro residues are not effective traps for lipid peroxyl radicals. Density functional theory (DFT) calculations revealed that the reactions proceed via radical hydrogen atom transfer (HAT) from the Cα position, indicating that the rate is determined by the exothermicity of the reaction. In the case of Ac-Tyr-OMe, HAT from the phenolic OH group is the kinetically preferred pathway, which shuts down when hydrogen bonding with an amine occurs. In an alkaline environment, where the phenolic OH group is deprotonated, the reaction is predicted to occur preferably at Cβ, likely through a proton-coupled electron transfer (PCET) mechanism.
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Affiliation(s)
- Joses G Nathanael
- School of Chemistry, The University of Melbourne, Grattan Street, Parkville, Victoria 3010, Australia.
| | - Bing Yuan
- School of Chemistry, The University of Melbourne, Grattan Street, Parkville, Victoria 3010, Australia.
| | - Christopher R Hall
- School of Chemistry, The University of Melbourne, Grattan Street, Parkville, Victoria 3010, Australia.
| | - Trevor A Smith
- School of Chemistry, The University of Melbourne, Grattan Street, Parkville, Victoria 3010, Australia.
| | - Uta Wille
- School of Chemistry, The University of Melbourne, Grattan Street, Parkville, Victoria 3010, Australia.
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4
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Cho J, Mulvihill CR, Klippenstein SJ, Sivaramakrishnan R. Bimolecular Peroxy Radical (RO 2) Reactions and Their Relevance in Radical Initiated Oxidation of Hydrocarbons. J Phys Chem A 2023; 127:300-315. [PMID: 36562763 DOI: 10.1021/acs.jpca.2c06960] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
The kinetics of peroxy radical (RO2) reactions have been of long-standing interest in atmospheric and combustion chemistry. Nevertheless, the lack of kinetic studies at higher temperatures for their reactions with other radicals such as OH has precluded the inclusion of this class of reactions in detailed kinetics models developed for combustion applications. In this work, guided by the limited room-temperature experimental studies on selected alkyl-peroxy radicals and literature theoretical kinetics on the prototypical CH3O2 + OH system, we have performed parametric studies on the effect of uncertainties in the rate coefficients and branching ratios to potential product channels for RO2 + OH reactions at higher temperatures. Literature kinetics models were used to simulate autoignition delays, laminar flame speeds, and speciation profiles in flow and stirred reactors for a variety of common combustion-relevant fuels. Inclusion of RO2 + OH reactions was found to retard autoignition in fuel-lean (φ = 0.5) mixtures of ethane and dimethyl ether in air. The observed effects were noticeably more pronounced in ozone-enriched combustion of ethane and dimethyl ether. The simulations also examined the influence of ozone doping levels, pressures, and equivalence ratios for both ethane and dimethyl ether oxidation. Sensitivity and flux analyses revealed that the RO2 + OH reaction is a significant sink of RO2 radicals at the early stage of autoignition, affecting fuel oxidation through RO2 ↔ QOOH, RO2 ↔ alkene + HO2, or RO2 + HO2 ↔ ROOH + O2. Additionally, the kinetic stability of the trioxide formed from RO2 + OH reactions was investigated using master equation analyses. Last, we discuss other bimolecular reactions that are missing in literature kinetics models but are relevant to hydrocarbon oxidation initiated by external radical sources (plasma-enhanced, ozone-enriched combustion, etc.). The present simulations provide a strong motivation for better characterizing the bimolecular kinetics of peroxy radicals.
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Affiliation(s)
- Jaeyoung Cho
- Chemical Sciences & Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Clayton R Mulvihill
- Chemical Sciences & Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Stephen J Klippenstein
- Chemical Sciences & Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Raghu Sivaramakrishnan
- Chemical Sciences & Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
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5
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Wang S, Zhao Y, Chan AWH, Yao M, Chen Z, Abbatt JPD. Organic Peroxides in Aerosol: Key Reactive Intermediates for Multiphase Processes in the Atmosphere. Chem Rev 2023; 123:1635-1679. [PMID: 36630720 DOI: 10.1021/acs.chemrev.2c00430] [Citation(s) in RCA: 21] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Organic peroxides (POs) are organic molecules with one or more peroxide (-O-O-) functional groups. POs are commonly regarded as chemically labile termination products from gas-phase radical chemistry and therefore serve as temporary reservoirs for oxidative radicals (HOx and ROx) in the atmosphere. Owing to their ubiquity, active gas-particle partitioning behavior, and reactivity, POs are key reactive intermediates in atmospheric multiphase processes determining the life cycle (formation, growth, and aging), climate, and health impacts of aerosol. However, there remain substantial gaps in the origin, molecular diversity, and fate of POs due to their complex nature and dynamic behavior. Here, we summarize the current understanding on atmospheric POs, with a focus on their identification and quantification, state-of-the-art analytical developments, molecular-level formation mechanisms, multiphase chemical transformation pathways, as well as environmental and health impacts. We find that interactions with SO2 and transition metal ions are generally the fast PO transformation pathways in atmospheric liquid water, with lifetimes estimated to be minutes to hours, while hydrolysis is particularly important for α-substituted hydroperoxides. Meanwhile, photolysis and thermolysis are likely minor sinks for POs. These multiphase PO transformation pathways are distinctly different from their gas-phase fates, such as photolysis and reaction with OH radicals, which highlights the need to understand the multiphase partitioning of POs. By summarizing the current advances and remaining challenges for the investigation of POs, we propose future research priorities regarding their origin, fate, and impacts in the atmosphere.
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Affiliation(s)
- Shunyao Wang
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai200240, China
- School of Environmental and Chemical Engineering, Shanghai University, Shanghai200444, China
- Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, OntarioM5S 3E5, Canada
| | - Yue Zhao
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai200240, China
| | - Arthur W H Chan
- Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, OntarioM5S 3E5, Canada
- School of the Environment, University of Toronto, Toronto, OntarioM5S 3E8, Canada
| | - Min Yao
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai200240, China
| | - Zhongming Chen
- State Key Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing100871, China
| | - Jonathan P D Abbatt
- Department of Chemistry, University of Toronto, Toronto, OntarioM5S 3H6, Canada
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6
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Smith Lewin C, Herbinet O, Battin-Leclerc F, Bourgalais J. Ozone-assisted oxidation of ethylene in a jet-stirred reactor: An experimental and modeling study. Chem Phys Lett 2022. [DOI: 10.1016/j.cplett.2022.139986] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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7
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Nathanael JG, Yuan B, Wille U. Oxidative Damage of Aliphatic Amino Acid Residues by the Environmental Pollutant NO 3·: Impact of Water on the Reactivity. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:7687-7695. [PMID: 35671332 DOI: 10.1021/acs.est.2c00863] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
The rate of oxidative damage of aliphatic amino acids and dipeptides by the environmental pollutant nitrate radical (NO3·) in an aqueous acidic environment was studied by laser flash photolysis. The reactivity dropped by a factor of about four for amino acid residues with secondary amide bonds and by a factor of up to nearly 20 for amino acid residues with tertiary amide bonds, compared with that in acetonitrile. According to density functional theory studies, the lower reactivity is due to protonation of the amide moiety, whereas in neutral water, hydrogen bonding with the amide should have little impact on the absolute reaction rate compared with that in acetonitrile. This finding can be rationalized by the high reactivity and broad reaction pattern of NO3·. Although hydrogen bonding involving the amide group raises the energies associated with some electron transfer processes, alternative low-energy pathways remain available so that the overall reaction rate is barely affected. The undiminished high reactivity of NO3· toward aliphatic amino acid residues in a neutral aqueous environment highlights the health-damaging potential of exposure to the combined air pollutants nitrogen dioxide (NO2·) and ozone (O3).
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Affiliation(s)
- Joses Grady Nathanael
- School of Chemistry, Bio21 Institute, The University of Melbourne, 30 Flemington Road, Parkville, Victoria 3010, Australia
| | - Bing Yuan
- School of Chemistry, Bio21 Institute, The University of Melbourne, 30 Flemington Road, Parkville, Victoria 3010, Australia
| | - Uta Wille
- School of Chemistry, Bio21 Institute, The University of Melbourne, 30 Flemington Road, Parkville, Victoria 3010, Australia
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8
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Berndt T, Chen J, Kjærgaard ER, Møller KH, Tilgner A, Hoffmann EH, Herrmann H, Crounse JD, Wennberg PO, Kjaergaard HG. Hydrotrioxide (ROOOH) formation in the atmosphere. Science 2022; 376:979-982. [PMID: 35617402 DOI: 10.1126/science.abn6012] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Organic hydrotrioxides (ROOOH) are known to be strong oxidants used in organic synthesis. Previously, it has been speculated that they are formed in the atmosphere through the gas-phase reaction of organic peroxy radicals (RO2) with hydroxyl radicals (OH). Here, we report direct observation of ROOOH formation from several atmospherically relevant RO2 radicals. Kinetic analysis confirmed rapid RO2 + OH reactions forming ROOOH, with rate coefficients close to the collision limit. For the OH-initiated degradation of isoprene, global modeling predicts molar hydrotrioxide formation yields of up to 1%, which represents an annual ROOOH formation of about 10 million metric tons. The atmospheric lifetime of ROOOH is estimated to be minutes to hours. Hydrotrioxides represent a previously omitted substance class in the atmosphere, the impact of which needs to be examined.
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Affiliation(s)
- Torsten Berndt
- Atmospheric Chemistry Department (ACD), Leibniz Institute for Tropospheric Research (TROPOS), 04318 Leipzig, Germany
| | - Jing Chen
- Department of Chemistry, University of Copenhagen, DK-2100 Copenhagen Ø, Denmark
| | - Eva R Kjærgaard
- Department of Chemistry, University of Copenhagen, DK-2100 Copenhagen Ø, Denmark
| | - Kristian H Møller
- Department of Chemistry, University of Copenhagen, DK-2100 Copenhagen Ø, Denmark
| | - Andreas Tilgner
- Atmospheric Chemistry Department (ACD), Leibniz Institute for Tropospheric Research (TROPOS), 04318 Leipzig, Germany
| | - Erik H Hoffmann
- Atmospheric Chemistry Department (ACD), Leibniz Institute for Tropospheric Research (TROPOS), 04318 Leipzig, Germany
| | - Hartmut Herrmann
- Atmospheric Chemistry Department (ACD), Leibniz Institute for Tropospheric Research (TROPOS), 04318 Leipzig, Germany
| | - John D Crounse
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125, USA
| | - Paul O Wennberg
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125, USA.,Division of Engineering and Applied Science, California Institute of Technology, Pasadena, CA 91125, USA
| | - Henrik G Kjaergaard
- Department of Chemistry, University of Copenhagen, DK-2100 Copenhagen Ø, Denmark
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9
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Watson PD, McKinley AJ, Wild DA. Photoelectron Spectroscopy and High-Level Ab Initio Calculations of the Iodide-Methylperoxy Radical Complex. J Phys Chem A 2022; 126:3072-3079. [PMID: 35549219 DOI: 10.1021/acs.jpca.2c00299] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Anion photoelectron spectroscopy has been used to investigate the structure and dynamics of CH3OOI- van der Waals complexes. Peaks within the photoelectron spectrum are attributed to photodetachment to the perturbed 2P3/2 state of I···CH3OO (3.46 eV) and the two 2P states of bare iodine. A broad feature at 1.7-2.4 eV is attributed to detachment to the excited singlet states from two O2-···CH3I complexes. This represents the first anion photoelectron spectroscopy of a halide-bound methylperoxy radical species. Complex structures have been optimized using MP2/aug-cc-pVQZ with single-point energies at W1w theory for ground-state complexes and NEVPT2 for photodetachment to excited O2. Interactions are dominated by electrostatics, with the anion species interacting with the methyl pocket of the solvating molecule, suggesting conversion via an SN2 mechanism, and excess energy leading to complex dissociation within the timescale of mass spectrometry. The calculated W1w Gibbs energies suggest that while an electron transfer (ET) pathway to conversion is available, it is comparatively unfavored.
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Affiliation(s)
- Peter D Watson
- School of Molecular Sciences, The University of Western Australia, Crawley, Western Australia 6009, Australia
| | - Allan J McKinley
- School of Molecular Sciences, The University of Western Australia, Crawley, Western Australia 6009, Australia
| | - Duncan A Wild
- School of Molecular Sciences, The University of Western Australia, Crawley, Western Australia 6009, Australia
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10
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Li J, Wang L, Wang L. Computational Study on the Reaction of β-Hydroxyethylperoxy Radical with HO 2 and Effects of Water Vapor. J Phys Chem A 2022; 126:2234-2243. [PMID: 35362984 DOI: 10.1021/acs.jpca.1c09009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The reaction of β-hydroxyethylperoxy radical (β-HEP) and HO2 with and without water was studied using quantum chemistry and kinetic calculations. The main products are HOCH2CH2OOH and 3O2 for the reaction with and without water, while all other reaction channels can be neglected. The rate coefficients of the reaction follow negative temperature dependence. The pseudo-second-order rate coefficients are 2-4 orders of magnitude smaller for the reaction with saturated water vapor, indicating the negligible contribution of water in this reaction. This is probably also true for other peroxy radicals (except for HO2), indicating that a large part of previous results on the water enhancement of reaction rate coefficients might have overestimated the influence of water.
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Affiliation(s)
- Junjie Li
- School of Chemistry & Chemical Engineering, South China University of Technology, Guangzhou 510640, China
| | - Lingyu Wang
- School of Chemistry & Chemical Engineering, South China University of Technology, Guangzhou 510640, China
| | - Liming Wang
- School of Chemistry & Chemical Engineering, South China University of Technology, Guangzhou 510640, China.,Guangdong Provincial Key Laboratory of Atmospheric Environment and Pollution Control, South China University of Technology, Guangzhou 510006, China
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11
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Nguyen TL, Perera A, Peeters J. High-accuracy first-principles-based rate coefficients for the reaction of OH and CH 3OOH. Phys Chem Chem Phys 2022; 24:26684-26691. [DOI: 10.1039/d2cp03919b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
The ˙OH-initiated oxidation of methyl hydroperoxide was theoretically characterized using high-accuracy composite amHEAT-345(Q) coupled-cluster calculations followed by a two-dimensional E,J resolved master equation analysis.
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Affiliation(s)
- Thanh Lam Nguyen
- Quantum Theory Project, Departments of Chemistry and Physics, University of Florida, Gainesville, FL, 32611, USA
| | - Ajith Perera
- Quantum Theory Project, Departments of Chemistry and Physics, University of Florida, Gainesville, FL, 32611, USA
| | - Jozef Peeters
- Department of Chemistry, University of Leuven, Celestijnenlaan 200F, B-3001 Leuven, Belgium
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12
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Klippenstein SJ. Spiers Memorial Lecture: theory of unimolecular reactions. Faraday Discuss 2022; 238:11-67. [DOI: 10.1039/d2fd00125j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
One hundred years ago, at an earlier Faraday Discussion meeting, Lindemann presented a mechanism that provides the foundation for contemplating the pressure dependence of unimolecular reactions. Since that time, our...
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13
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Cui J, Nathanael JG, Wille U. Oxidative Damage of S‐Containing Amino Acids by the Environmental Radical NO
3
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: A Kinetic, Product and Computational Study. ChemistrySelect 2021. [DOI: 10.1002/slct.202101027] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Jiaxing Cui
- School of Chemistry Bio21 Institute The University of Melbourne 30 Flemington Road Parkville Victoria 3010 Australia
| | - Joses G. Nathanael
- School of Chemistry Bio21 Institute The University of Melbourne 30 Flemington Road Parkville Victoria 3010 Australia
| | - Uta Wille
- School of Chemistry Bio21 Institute The University of Melbourne 30 Flemington Road Parkville Victoria 3010 Australia
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14
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Leitão EFV, Angelo Fonseca de Souza M, do Monte SA, Ventura E. Competition between electron transfer and base-induced elimination mechanisms in the gas-phase reactions of superoxide with alkyl hydroperoxides. Phys Chem Chem Phys 2021; 23:5583-5595. [PMID: 33655284 DOI: 10.1039/d0cp05761d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Understanding the mechanism responsible for peroxides decomposition is essential to explain several biochemical processes. The mechanisms of the intrinsic reactions between the superoxide radical anion (O2˙-) and methyl, ethyl, and tert-butyl hydroperoxides (ROOH, with R = Me, Et, and t-Bu) have been characterized to understand the mechanism responsible for peroxides decomposition. The reaction energy diagrams suggest a competition between the spin-allowed and spin-forbidden electron transfer (ET), and base-induced elimination (ECO2) mechanisms. In all cases, the spin-allowed ET mechanism describes formation of the ozonide anion radical (O3˙-), either complexed with an alcohol molecule or separated. For the O2˙-/MeOOH(EtOOH) reactions, HCO2- (MeCO2-) + H2O + HO˙ and OH- + CH2O(MeCHO) + HO2˙ products are associated with the spin-forbidden ET and ECO2 channels, respectively. On the other hand, for the reaction between O2˙- and t-BuOOH, the spin-forbidden ET route describes formation of the MeCOCH2- enolate (either separated or hydrated) along with the methyl peroxyl (MeO2˙) radical. In addition, the regeneration of O2˙-via spin-forbidden ET and ECO2 channels was also characterized from the decomposition of ROOH, yielding diols (CH2(OH)2 and MeCH(OH)2), aldehydes (CH2O and MeCHO), and oxirane (cyc-CH2CMe2O).
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Affiliation(s)
- Ezequiel Fragoso Vieira Leitão
- Unidade Acadêmica de Ciências Exatas e da Natureza, Universidade Federal de Campina Grande, Cajazeiras, PB 58900-000, Brazil.
| | | | - Silmar Andrade do Monte
- Departamento de Química, CCEN, Universidade Federal da Paraíba, João Pessoa, PB 58-059-900, Brazil
| | - Elizete Ventura
- Departamento de Química, CCEN, Universidade Federal da Paraíba, João Pessoa, PB 58-059-900, Brazil
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15
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Kaipara R, Rajakumar B. Kinetic Studies on the Photo-oxidation Reactions of Methyl-2-methyl Butanoate and Methyl-3-methyl Butanoate with OH Radicals. J Phys Chem A 2020; 124:10923-10936. [DOI: 10.1021/acs.jpca.0c07715] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Revathy Kaipara
- Department of Chemistry, Indian Institute of Technology Madras, Chennai 600036, India
| | - Balla Rajakumar
- Department of Chemistry, Indian Institute of Technology Madras, Chennai 600036, India
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16
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Luo PL, Horng EC. Simultaneous determination of transient free radicals and reaction kinetics by high-resolution time-resolved dual-comb spectroscopy. Commun Chem 2020; 3:95. [PMID: 36703338 PMCID: PMC9814257 DOI: 10.1038/s42004-020-00353-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2020] [Accepted: 07/10/2020] [Indexed: 01/29/2023] Open
Abstract
Quantitative determination of multiple transient species is critical in investigating reaction mechanisms and kinetics under various conditions. Dual-comb spectroscopy, a comb-laser-based multi-heterodyne interferometric technique that enables simultaneous achievement of broadband, high-resolution, and rapid spectral acquisition, opens a new era of time-resolved spectroscopic measurements. Employing an electro-optic dual-comb spectrometer with central wavelength near 3 µm coupled with a Herriott multipass absorption cell, here we demonstrate simultaneous determination of multiple species, including methanol, formaldehyde, HO2 and OH radicals, and investigate the reaction kinetics. In addition to quantitative spectral analyses of high-resolution and tens of microsecond time-resolved spectra recorded upon flash photolysis of precursor mixtures, we determine a rate coefficient of the HO2 + NO reaction by directly detecting both HO2 and OH radicals. Our approach exhibits potential in discovering reactive intermediates and exploring complex reaction mechanisms, especially those of radical-radical reactions.
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Affiliation(s)
- Pei-Ling Luo
- Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei, 10617, Taiwan.
| | - Er-Chien Horng
- Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei, 10617, Taiwan
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17
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Travis KR, Heald CL, Allen HM, Apel EC, Arnold SR, Blake DR, Brune WH, Chen X, Commane R, Crounse JD, Daube BC, Diskin GS, Elkins JW, Evans MJ, Hall SR, Hintsa EJ, Hornbrook RS, Kasibhatla PS, Kim MJ, Luo G, McKain K, Millet DB, Moore FL, Peischl J, Ryerson TB, Sherwen T, Thames AB, Ullmann K, Wang X, Wennberg PO, Wolfe GM, Yu F. Constraining remote oxidation capacity with ATom observations. ATMOSPHERIC CHEMISTRY AND PHYSICS 2020; 20:7753-7781. [PMID: 33688335 PMCID: PMC7939060 DOI: 10.5194/acp-20-7753-2020] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
The global oxidation capacity, defined as the tropospheric mean concentration of the hydroxyl radical (OH), controls the lifetime of reactive trace gases in the atmosphere such as methane and carbon monoxide (CO). Models tend to underestimate the methane lifetime and CO concentrations throughout the troposphere, which is consistent with excessive OH. Approximately half of the oxidation of methane and non-methane volatile organic compounds (VOCs) is thought to occur over the oceans where oxidant chemistry has received little validation due to a lack of observational constraints. We use observations from the first two deployments of the NASA ATom aircraft campaign during July-August 2016 and January-February 2017 to evaluate the oxidation capacity over the remote oceans and its representation by the GEOS-Chem chemical transport model. The model successfully simulates the magnitude and vertical profile of remote OH within the measurement uncertainties. Comparisons against the drivers of OH production (water vapor, ozone, and NO y concentrations, ozone photolysis frequencies) also show minimal bias, with the exception of wintertime NO y . The severe model overestimate of NO y during this period may indicate insufficient wet scavenging and/or missing loss on sea-salt aerosols. Large uncertainties in these processes require further study to improve simulated NO y partitioning and removal in the troposphere, but preliminary tests suggest that their overall impact could marginally reduce the model bias in tropospheric OH. During the ATom-1 deployment, OH reactivity (OHR) below 3 km is significantly enhanced, and this is not captured by the sum of its measured components (cOHRobs) or by the model (cOHRmod). This enhancement could suggest missing reactive VOCs but cannot be explained by a comprehensive simulation of both biotic and abiotic ocean sources of VOCs. Additional sources of VOC reactivity in this region are difficult to reconcile with the full suite of ATom measurement constraints. The model generally reproduces the magnitude and seasonality of cOHRobs but underestimates the contribution of oxygenated VOCs, mainly acetaldehyde, which is severely underestimated throughout the troposphere despite its calculated lifetime of less than a day. Missing model acetaldehyde in previous studies was attributed to measurement uncertainties that have been largely resolved. Observations of peroxyacetic acid (PAA) provide new support for remote levels of acetaldehyde. The underestimate in both model acetaldehyde and PAA is present throughout the year in both hemispheres and peaks during Northern Hemisphere summer. The addition of ocean sources of VOCs in the model increases cOHRmod by 3% to 9% and improves model-measurement agreement for acetaldehyde, particularly in winter, but cannot resolve the model summertime bias. Doing so would require 100 Tg yr-1 of a long-lived unknown precursor throughout the year with significant additional emissions in the Northern Hemisphere summer. Improving the model bias for remote acetaldehyde and PAA is unlikely to fully resolve previously reported model global biases in OH and methane lifetime, suggesting that future work should examine the sources and sinks of OH over land.
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Affiliation(s)
- Katherine R. Travis
- Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Colette L. Heald
- Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Hannah M. Allen
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, USA
| | - Eric C. Apel
- Atmospheric Chemistry Observations & Modeling Laboratory, National Center for Atmospheric Research, Boulder, CO, USA
| | - Stephen R. Arnold
- Institute for Climate and Atmospheric Science, School of Earth and Environment, University of Leeds, Leeds, UK
| | - Donald R. Blake
- Department of Chemistry, University of California Irvine, Irvine, CA, USA
| | - William H. Brune
- Department of Meteorology, Pennsylvania State University, University Park, PA, USA
| | - Xin Chen
- University of Minnesota, Department of Soil, Water and Climate, St. Paul, MN, USA
| | - Róisín Commane
- Dept. of Earth & Environmental Sciences of Lamont-Doherty Earth Observatory and Columbia University, Palisades, NY, USA
| | - John D. Crounse
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, USA
| | - Bruce C. Daube
- Harvard John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, MA, USA
| | | | - James W. Elkins
- Global Monitoring Division, NOAA Earth System Research Laboratory, Boulder, CO, USA
| | - Mathew J. Evans
- Wolfson Atmospheric Chemistry Laboratories (WACL), Department of Chemistry, University of York, York, UK
- National Centre for Atmospheric Science (NCAS), University of York, York, UK
| | - Samuel R. Hall
- Atmospheric Chemistry Observations & Modeling Laboratory, National Center for Atmospheric Research, Boulder, CO, USA
| | - Eric J. Hintsa
- Global Monitoring Division, NOAA Earth System Research Laboratory, Boulder, CO, USA
- Cooperative Institute for Research in Environmental Science, University of Colorado, CO, USA
| | - Rebecca S. Hornbrook
- Atmospheric Chemistry Observations & Modeling Laboratory, National Center for Atmospheric Research, Boulder, CO, USA
| | | | - Michelle J. Kim
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, USA
- Division of Engineering and Applied Science, California Institute of Technology, Pasadena, CA, USA
| | - Gan Luo
- Atmospheric Sciences Research Center, University of Albany, Albany, NY, USA
| | - Kathryn McKain
- Global Monitoring Division, NOAA Earth System Research Laboratory, Boulder, CO, USA
- Cooperative Institute for Research in Environmental Science, University of Colorado, CO, USA
| | - Dylan B. Millet
- University of Minnesota, Department of Soil, Water and Climate, St. Paul, MN, USA
| | - Fred L. Moore
- Global Monitoring Division, NOAA Earth System Research Laboratory, Boulder, CO, USA
- Cooperative Institute for Research in Environmental Science, University of Colorado, CO, USA
| | - Jeffrey Peischl
- Cooperative Institute for Research in Environmental Science, University of Colorado, CO, USA
- Chemical Sciences Division, NOAA Earth System Research Laboratory, Boulder, CO, USA
| | - Thomas B. Ryerson
- Chemical Sciences Division, NOAA Earth System Research Laboratory, Boulder, CO, USA
| | - Tomás Sherwen
- Wolfson Atmospheric Chemistry Laboratories (WACL), Department of Chemistry, University of York, York, UK
- National Centre for Atmospheric Science (NCAS), University of York, York, UK
| | - Alexander B. Thames
- Department of Meteorology, Pennsylvania State University, University Park, PA, USA
| | - Kirk Ullmann
- Atmospheric Chemistry Observations & Modeling Laboratory, National Center for Atmospheric Research, Boulder, CO, USA
| | - Xuan Wang
- Harvard John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, MA, USA
- School of Energy and Environment, City University of Hong Kong, Hong Kong, China
| | - Paul O. Wennberg
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, USA
- Division of Engineering and Applied Science, California Institute of Technology, Pasadena, CA, USA
| | - Glenn M. Wolfe
- Atmospheric Chemistry and Dynamics Laboratory, NASA Goddard Space Flight Center, Greenbelt, MD, USA
| | - Fangqun Yu
- Atmospheric Sciences Research Center, University of Albany, Albany, NY, USA
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18
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Water Catalysis of the Reaction of Methanol with OH Radical in the Atmosphere is Negligible. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202001065] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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19
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Wu J, Gao LG, Varga Z, Xu X, Ren W, Truhlar DG. Water Catalysis of the Reaction of Methanol with OH Radical in the Atmosphere is Negligible. Angew Chem Int Ed Engl 2020; 59:10826-10830. [DOI: 10.1002/anie.202001065] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Revised: 02/23/2020] [Indexed: 11/07/2022]
Affiliation(s)
- Junjun Wu
- Department of Mechanical and Automation Engineering & Shenzhen Research Institute The Chinese University of Hong Kong New Territories Hong Kong SAR China
| | - Lu Gem Gao
- Center for Combustion Energy Department of Energy and Power Engineering Key Laboratory for Thermal Science and Power Engineering of Ministry of Education Tsinghua University Beijing China
| | - Zoltan Varga
- Department of Chemistry, Chemical Theory Center and Supercomputing Institute University of Minnesota Minneapolis USA
| | - Xuefei Xu
- Center for Combustion Energy Department of Energy and Power Engineering Key Laboratory for Thermal Science and Power Engineering of Ministry of Education Tsinghua University Beijing China
| | - Wei Ren
- Department of Mechanical and Automation Engineering & Shenzhen Research Institute The Chinese University of Hong Kong New Territories Hong Kong SAR China
| | - Donald G. Truhlar
- Department of Chemistry, Chemical Theory Center and Supercomputing Institute University of Minnesota Minneapolis USA
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20
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Weber I, Bouzidi H, Krumm B, Schoemaecker C, Tomas A, Fittschen C. Water does not catalyze the reaction of OH radicals with ethanol. Phys Chem Chem Phys 2020; 22:7165-7168. [DOI: 10.1039/d0cp00467g] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
H2O2 as an OH precursor in simulation chambers induces an increase in the apparent rate constant with an increase in the humidity.
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Affiliation(s)
- Isabelle Weber
- Univ. Lille
- CNRS
- UMR 8522 – PC2A – Physicochimie des Processus de Combustion et de l’Atmosphère
- F-59000 Lille
- France
| | - Hichem Bouzidi
- IMT Lille Douai
- Univ. Lille
- SAGE – Sciences de l’Atmosphère et Génie de l’Environnement
- 59500 Lille
- France
| | - Bianca Krumm
- Univ. Lille
- CNRS
- UMR 8522 – PC2A – Physicochimie des Processus de Combustion et de l’Atmosphère
- F-59000 Lille
- France
| | - Coralie Schoemaecker
- Univ. Lille
- CNRS
- UMR 8522 – PC2A – Physicochimie des Processus de Combustion et de l’Atmosphère
- F-59000 Lille
- France
| | - Alexandre Tomas
- IMT Lille Douai
- Univ. Lille
- SAGE – Sciences de l’Atmosphère et Génie de l’Environnement
- 59500 Lille
- France
| | - Christa Fittschen
- Univ. Lille
- CNRS
- UMR 8522 – PC2A – Physicochimie des Processus de Combustion et de l’Atmosphère
- F-59000 Lille
- France
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21
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Peng Z, Jimenez JL. Radical chemistry in oxidation flow reactors for atmospheric chemistry research. Chem Soc Rev 2020; 49:2570-2616. [DOI: 10.1039/c9cs00766k] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
We summarize the studies on the chemistry in oxidation flow reactor and discuss its atmospheric relevance.
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Affiliation(s)
- Zhe Peng
- Cooperative Institute for Research in Environmental Sciences and Department of Chemistry
- University of Colorado
- Boulder
- USA
| | - Jose L. Jimenez
- Cooperative Institute for Research in Environmental Sciences and Department of Chemistry
- University of Colorado
- Boulder
- USA
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22
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Yan C, Krasnoperov LN. Pressure-Dependent Kinetics of the Reaction between CH3O2 and OH: TRIOX Formation. J Phys Chem A 2019; 123:8349-8357. [DOI: 10.1021/acs.jpca.9b03861] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Chao Yan
- Department of Mechanical Aerospace Engineering, Princeton University, Princeton, New Jersey 08540, United States
| | - Lev N. Krasnoperov
- Department of Chemistry and Environmental Science, New Jersey Institute of Technology, University Heights, Newark, New Jersey 07102, United States
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23
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Zhang F, Huang C. Pressure-Dependent Kinetics of the Reaction between CH 3OO and OH Focusing on the Product Yield of Methyltrioxide (CH 3OOOH). J Phys Chem Lett 2019; 10:3598-3603. [PMID: 31192603 DOI: 10.1021/acs.jpclett.9b00781] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The reaction kinetics of methyl peroxy radical (CH3OO) and hydroxyl radical (OH) has attracted an increasing level of interest in the past decade, while the branching yields of various product channels are still under debate. In this work, a comprehensive theoretical effort was made to investigate the branching yield of the stabilized methyltrioxide (CH3OOOH, TRIOX) adduct, which has recently been a research focus. Our computed branching ratio of TRIOX at 298 K and 760 Torr is ∼0.04, in agreement with the result of multiplexed photoionization mass spectrometry. We show that the large branching yield obtained in an early theoretical study mainly originated from the collision-induced strong stabilization presented in their simulation. Our findings clarify the controversial product yield results for this important species in recent studies. The computed rate constants over wide temperature and pressure ranges allow better integration of this reaction into global atmospheric models and low-temperature combustion kinetic models.
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Affiliation(s)
- Feng Zhang
- National Synchrotron Radiation Laboratory , University of Science and Technology of China , Hefei , Anhui 230029 , P. R. China
| | - Can Huang
- National Synchrotron Radiation Laboratory , University of Science and Technology of China , Hefei , Anhui 230029 , P. R. China
- Center for Combustion Energy and Key Laboratory for Thermal Science and Power Engineering of MOE , Tsinghua University , Beijing 100084 , P. R. China
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24
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Chen X, Millet DB, Singh HB, Wisthaler A, Apel EC, Atlas EL, Blake DR, Bourgeois I, Brown SS, Crounse JD, de Gouw JA, Flocke FM, Fried A, Heikes BG, Hornbrook RS, Mikoviny T, Min KE, Müller M, Neuman JA, O'Sullivan DW, Peischl J, Pfister GG, Richter D, Roberts JM, Ryerson TB, Shertz SR, Thompson CR, Treadaway V, Veres PR, Walega J, Warneke C, Washenfelder RA, Weibring P, Yuan B. On the sources and sinks of atmospheric VOCs: an integrated analysis of recent aircraft campaigns over North America. ATMOSPHERIC CHEMISTRY AND PHYSICS 2019; 19:9097-9123. [PMID: 33688334 PMCID: PMC7939023 DOI: 10.5194/acp-19-9097-2019] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
We apply a high-resolution chemical transport model (GEOS-Chem CTM) with updated treatment of volatile organic compounds (VOCs) and a comprehensive suite of airborne datasets over North America to (i) characterize the VOC budget and (ii) test the ability of current models to capture the distribution and reactivity of atmospheric VOCs over this region. Biogenic emissions dominate the North American VOC budget in the model, accounting for 70 % and 95 % of annually emitted VOC carbon and reactivity, respectively. Based on current inventories anthropogenic emissions have declined to the point where biogenic emissions are the dominant summertime source of VOC reactivity even in most major North American cities. Methane oxidation is a 2x larger source of nonmethane VOCs (via production of formaldehyde and methyl hydroperoxide) over North America in the model than are anthropogenic emissions. However, anthropogenic VOCs account for over half of the ambient VOC loading over the majority of the region owing to their longer aggregate lifetime. Fires can be a significant VOC source episodically but are small on average. In the planetary boundary layer (PBL), the model exhibits skill in capturing observed variability in total VOC abundance (R 2 = 0:36) and reactivity (R 2 = 0:54). The same is not true in the free troposphere (FT), where skill is low and there is a persistent low model bias (~ 60 %), with most (27 of 34) model VOCs underestimated by more than a factor of 2. A comparison of PBL: FT concentration ratios over the southeastern US points to a misrepresentation of PBL ventilation as a contributor to these model FT biases. We also find that a relatively small number of VOCs (acetone, methanol, ethane, acetaldehyde, formaldehyde, isoprene C oxidation products, methyl hydroperoxide) drive a large fraction of total ambient VOC reactivity and associated model biases; research to improve understanding of their budgets is thus warranted. A source tracer analysis suggests a current overestimate of biogenic sources for hydroxyacetone, methyl ethyl ketone and glyoxal, an underestimate of biogenic formic acid sources, and an underestimate of peroxyacetic acid production across biogenic and anthropogenic precursors. Future work to improve model representations of vertical transport and to address the VOC biases discussed are needed to advance predictions of ozone and SOA formation.
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Affiliation(s)
- Xin Chen
- Department of Soil, Water, and Climate, University of Minnesota, Minneapolis-Saint Paul, MN, USA
| | - Dylan B. Millet
- Department of Soil, Water, and Climate, University of Minnesota, Minneapolis-Saint Paul, MN, USA
| | | | - Armin Wisthaler
- Institute for Ion Physics and Applied Physics, University of Innsbruck, 6020 Innsbruck, Austria
- Department of Chemistry, University of Oslo, Oslo, Norway
| | - Eric C. Apel
- Atmospheric Chemistry Observations & Modeling Laboratory, National Center for Atmospheric Research, Boulder, CO, USA
| | - Elliot L. Atlas
- Department of Atmospheric Sciences, Rosenstiel School of Marine and Atmospheric Science, University of Miami, Miami, FL, USA
| | - Donald R. Blake
- Department of Chemistry, University of California, Irvine, Irvine, CA, USA
| | - Ilann Bourgeois
- Chemical Sciences Division, NOAA Earth System Research Laboratory, Boulder, CO, USA
- Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO, USA
| | - Steven S. Brown
- Chemical Sciences Division, NOAA Earth System Research Laboratory, Boulder, CO, USA
| | - John D. Crounse
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, USA
| | - Joost A. de Gouw
- Chemical Sciences Division, NOAA Earth System Research Laboratory, Boulder, CO, USA
- Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO, USA
| | - Frank M. Flocke
- Atmospheric Chemistry Observations & Modeling Laboratory, National Center for Atmospheric Research, Boulder, CO, USA
| | - Alan Fried
- Institute of Arctic & Alpine Research, University of Colorado, Boulder, CO, USA
| | - Brian G. Heikes
- Graduate School of Oceanography, University of Rhode Island, Narragansett, RI, USA
| | - Rebecca S. Hornbrook
- Atmospheric Chemistry Observations & Modeling Laboratory, National Center for Atmospheric Research, Boulder, CO, USA
| | - Tomas Mikoviny
- Department of Chemistry, University of Oslo, Oslo, Norway
| | - Kyung-Eun Min
- School of Earth Science and Environmental Engineering, Gwangju Institute of Science and Technology, Gwangju, South Korea
| | - Markus Müller
- Institute for Ion Physics and Applied Physics, University of Innsbruck, 6020 Innsbruck, Austria
| | - J. Andrew Neuman
- Chemical Sciences Division, NOAA Earth System Research Laboratory, Boulder, CO, USA
- Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO, USA
| | | | - Jeff Peischl
- Chemical Sciences Division, NOAA Earth System Research Laboratory, Boulder, CO, USA
- Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO, USA
| | - Gabriele G. Pfister
- Atmospheric Chemistry Observations & Modeling Laboratory, National Center for Atmospheric Research, Boulder, CO, USA
| | - Dirk Richter
- Institute of Arctic & Alpine Research, University of Colorado, Boulder, CO, USA
| | - James M. Roberts
- Chemical Sciences Division, NOAA Earth System Research Laboratory, Boulder, CO, USA
| | - Thomas B. Ryerson
- Chemical Sciences Division, NOAA Earth System Research Laboratory, Boulder, CO, USA
| | - Stephen R. Shertz
- Atmospheric Chemistry Observations & Modeling Laboratory, National Center for Atmospheric Research, Boulder, CO, USA
| | - Chelsea R. Thompson
- Chemical Sciences Division, NOAA Earth System Research Laboratory, Boulder, CO, USA
- Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO, USA
| | - Victoria Treadaway
- Graduate School of Oceanography, University of Rhode Island, Narragansett, RI, USA
| | - Patrick R. Veres
- Chemical Sciences Division, NOAA Earth System Research Laboratory, Boulder, CO, USA
| | - James Walega
- Institute of Arctic & Alpine Research, University of Colorado, Boulder, CO, USA
| | - Carsten Warneke
- Chemical Sciences Division, NOAA Earth System Research Laboratory, Boulder, CO, USA
- Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO, USA
| | | | - Petter Weibring
- Institute of Arctic & Alpine Research, University of Colorado, Boulder, CO, USA
| | - Bin Yuan
- Institute for Environmental and Climate Research, Jinan University, Guangzhou, China
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25
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Welch BK, Dawes R, Bross DH, Ruscic B. An Automated Thermochemistry Protocol Based on Explicitly Correlated Coupled-Cluster Theory: The Methyl and Ethyl Peroxy Families. J Phys Chem A 2019; 123:5673-5682. [DOI: 10.1021/acs.jpca.9b04381] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Bradley K. Welch
- Department of Chemistry, Missouri University of Science and Technology, Rolla, Missouri 65409, United States
| | - Richard Dawes
- Department of Chemistry, Missouri University of Science and Technology, Rolla, Missouri 65409, United States
| | - David H. Bross
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Argonne, Illinois 60439, United States
| | - Branko Ruscic
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Argonne, Illinois 60439, United States
- Consortium for Advanced Science and Engineering, University of Chicago, Chicago, Illinois 60637, United States
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26
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27
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Iyer S, Rissanen MP, Kurtén T. Reaction between Peroxy and Alkoxy Radicals Can Form Stable Adducts. J Phys Chem Lett 2019; 10:2051-2057. [PMID: 30958011 PMCID: PMC6727596 DOI: 10.1021/acs.jpclett.9b00405] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2019] [Accepted: 04/08/2019] [Indexed: 05/03/2023]
Abstract
Peroxy (RO2) and alkoxy (RO) radicals are prototypical intermediates in any hydrocarbon oxidation. In this work, we use computational methods to (1) study the mechanism and kinetics of the RO2 + OH reaction for previously unexplored "R" structures (R = CH(O)CH2 and R = CH3C(O)) and (2) investigate a hitherto unaccounted channel of molecular growth, R'O2 + RO. On the singlet surface, these reactions rapidly form ROOOH and R'OOOR adducts, respectively. The former decomposes to RO + HO2 and R(O)OH + O2 products, while the main decomposition channel for the latter is back to the reactant radicals. Decomposition rates of R'OOOR adducts varied between 103 and 0.015 s-1 at 298 K and 1 atm. The most long-lived R'OOOR adducts likely account for some fraction of the elemental compositions detected in the atmosphere that are commonly assigned to stable covalently bound dimers.
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Affiliation(s)
- Siddharth Iyer
- Department of Chemistry and Institute
for Atmospheric and Earth System Research (INAR), University of Helsinki, P.O. Box 55, FI-00014 Helsinki, Finland
| | - Matti P. Rissanen
- Aerosol
Physics Laboratory, Physics Unit, Tampere
University, FI-33101 Tampere, Finland
- Department
of Physics and Institute for Atmospheric and Earth System Research
(INAR), University of Helsinki, P.O. Box 64, FI-00014 Helsinki, Finland
| | - Theo Kurtén
- Department of Chemistry and Institute
for Atmospheric and Earth System Research (INAR), University of Helsinki, P.O. Box 55, FI-00014 Helsinki, Finland
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28
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Chao W, Jr‐Min Lin J, Takahashi K, Tomas A, Yu L, Kajii Y, Batut S, Schoemaecker C, Fittschen C. Water Vapor Does Not Catalyze the Reaction between Methanol and OH Radicals. Angew Chem Int Ed Engl 2019; 58:5013-5017. [DOI: 10.1002/anie.201900711] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2019] [Indexed: 11/08/2022]
Affiliation(s)
- Wen Chao
- Institute of Atomic and Molecular SciencesAcademia Sinica Taipei 10617 Taiwan
| | - Jim Jr‐Min Lin
- Institute of Atomic and Molecular SciencesAcademia Sinica Taipei 10617 Taiwan
| | - Kaito Takahashi
- Institute of Atomic and Molecular SciencesAcademia Sinica Taipei 10617 Taiwan
| | - Alexandre Tomas
- Sciences de l'Atmosphère et Génie de l'Environnement SAGEIMT Lille Douai 941 Rue Charles Bourseul 59508 Douai France
| | - Lu Yu
- Atmospheric ChemistryDepartment of Natural SourcesUniversity of Kyoto Kyoto 606-8501 Japan
| | - Yoshizumi Kajii
- Atmospheric ChemistryDepartment of Natural SourcesUniversity of Kyoto Kyoto 606-8501 Japan
| | - Sébastien Batut
- Physical Chemistry of Combustion and Atmospheric ProcessesUniversity Lille/ CNRS UMR 8522 Cité Scientifique, Bât. C11 59655 Villeneuve d'Ascq France
| | - Coralie Schoemaecker
- Physical Chemistry of Combustion and Atmospheric ProcessesUniversity Lille/ CNRS UMR 8522 Cité Scientifique, Bât. C11 59655 Villeneuve d'Ascq France
| | - Christa Fittschen
- Physical Chemistry of Combustion and Atmospheric ProcessesUniversity Lille/ CNRS UMR 8522 Cité Scientifique, Bât. C11 59655 Villeneuve d'Ascq France
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29
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Nathanael JG, Wille U. Oxidative Damage in Aliphatic Amino Acids and Di- and Tripeptides by the Environmental Free Radical Oxidant NO 3•: The Role of the Amide Bond Revealed by Kinetic and Computational Studies. J Org Chem 2019; 84:3405-3418. [PMID: 30742433 DOI: 10.1021/acs.joc.8b03224] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Kinetic and computational data reveal a complex behavior of the important environmental free radical oxidant NO3• in its reactions with aliphatic amino acids and di- and tripeptides, suggesting that attack at the amide N-H bond in the peptide backbone is a highly viable pathway, which proceeds through a proton-coupled electron transfer (PCET) mechanism with a rate coefficient of about 1 × 106 M-1 s-1 in acetonitrile. Similar rate coefficients were determined for hydrogen abstraction from the α-carbon and from tertiary C-H bonds in the side chain. The obtained rate coefficients for the reaction of NO3• with aliphatic di- and tripeptides suggest that attack occurs at all of these sites in each individual amino acid residue, which makes aliphatic peptide sequences highly vulnerable to NO3•-induced oxidative damage. No evidence for amide neighboring group effects, which have previously been found to facilitate radical-induced side-chain damage in phenylalanine, was found for the reaction of NO3• with side chains in aliphatic peptides.
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Affiliation(s)
- Joses G Nathanael
- School of Chemistry, Bio21 Institute , The University of Melbourne , 30 Flemington Road , Parkville , Victoria 3010 , Australia
| | - Uta Wille
- School of Chemistry, Bio21 Institute , The University of Melbourne , 30 Flemington Road , Parkville , Victoria 3010 , Australia
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30
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Chao W, Jr‐Min Lin J, Takahashi K, Tomas A, Yu L, Kajii Y, Batut S, Schoemaecker C, Fittschen C. Water Vapor Does Not Catalyze the Reaction between Methanol and OH Radicals. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201900711] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Wen Chao
- Institute of Atomic and Molecular SciencesAcademia Sinica Taipei 10617 Taiwan
| | - Jim Jr‐Min Lin
- Institute of Atomic and Molecular SciencesAcademia Sinica Taipei 10617 Taiwan
| | - Kaito Takahashi
- Institute of Atomic and Molecular SciencesAcademia Sinica Taipei 10617 Taiwan
| | - Alexandre Tomas
- Sciences de l'Atmosphère et Génie de l'Environnement SAGEIMT Lille Douai 941 Rue Charles Bourseul 59508 Douai France
| | - Lu Yu
- Atmospheric ChemistryDepartment of Natural SourcesUniversity of Kyoto Kyoto 606-8501 Japan
| | - Yoshizumi Kajii
- Atmospheric ChemistryDepartment of Natural SourcesUniversity of Kyoto Kyoto 606-8501 Japan
| | - Sébastien Batut
- Physical Chemistry of Combustion and Atmospheric ProcessesUniversity Lille/ CNRS UMR 8522 Cité Scientifique, Bât. C11 59655 Villeneuve d'Ascq France
| | - Coralie Schoemaecker
- Physical Chemistry of Combustion and Atmospheric ProcessesUniversity Lille/ CNRS UMR 8522 Cité Scientifique, Bât. C11 59655 Villeneuve d'Ascq France
| | - Christa Fittschen
- Physical Chemistry of Combustion and Atmospheric ProcessesUniversity Lille/ CNRS UMR 8522 Cité Scientifique, Bât. C11 59655 Villeneuve d'Ascq France
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31
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Bianchi F, Kurtén T, Riva M, Mohr C, Rissanen MP, Roldin P, Berndt T, Crounse JD, Wennberg PO, Mentel TF, Wildt J, Junninen H, Jokinen T, Kulmala M, Worsnop DR, Thornton JA, Donahue N, Kjaergaard HG, Ehn M. Highly Oxygenated Organic Molecules (HOM) from Gas-Phase Autoxidation Involving Peroxy Radicals: A Key Contributor to Atmospheric Aerosol. Chem Rev 2019; 119:3472-3509. [PMID: 30799608 PMCID: PMC6439441 DOI: 10.1021/acs.chemrev.8b00395] [Citation(s) in RCA: 240] [Impact Index Per Article: 48.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
![]()
Highly
oxygenated organic molecules (HOM) are formed in the atmosphere
via autoxidation involving peroxy radicals arising from volatile organic
compounds (VOC). HOM condense on pre-existing particles and can be
involved in new particle formation. HOM thus contribute to the formation
of secondary organic aerosol (SOA), a significant and ubiquitous component
of atmospheric aerosol known to affect the Earth’s radiation
balance. HOM were discovered only very recently, but the interest
in these compounds has grown rapidly. In this Review, we define HOM
and describe the currently available techniques for their identification/quantification,
followed by a summary of the current knowledge on their formation
mechanisms and physicochemical properties. A main aim is to provide
a common frame for the currently quite fragmented literature on HOM
studies. Finally, we highlight the existing gaps in our understanding
and suggest directions for future HOM research.
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Affiliation(s)
- Federico Bianchi
- Institute for Atmospheric and Earth System Research, Faculty of Science , University of Helsinki , Helsinki 00014 , Finland.,Aerosol and Haze Laboratory , University of Chemical Technology , Beijing 100029 , P.R. China
| | - Theo Kurtén
- Institute for Atmospheric and Earth System Research, Faculty of Science , University of Helsinki , Helsinki 00014 , Finland
| | - Matthieu Riva
- IRCELYON, CNRS University of Lyon , Villeurbanne 69626 , France
| | - Claudia Mohr
- Department of Environmental Science and Analytical Chemistry , Stockholm University , Stockholm 11418 , Sweden
| | - Matti P Rissanen
- Institute for Atmospheric and Earth System Research, Faculty of Science , University of Helsinki , Helsinki 00014 , Finland
| | - Pontus Roldin
- Division of Nuclear Physics, Department of Physics , Lund University , Lund 22100 , Sweden
| | - Torsten Berndt
- Leibniz Institute for Tropospheric Research , Leipzig 04318 , Germany
| | - John D Crounse
- Division of Geological and Planetary Sciences , California Institute of Technology , Pasadena , California 91125 , United States
| | - Paul O Wennberg
- Division of Geological and Planetary Sciences , California Institute of Technology , Pasadena , California 91125 , United States
| | - Thomas F Mentel
- Institut für Energie und Klimaforschung, IEK-8 , Forschungszentrum Jülich GmbH , Jülich 52425 , Germany
| | - Jürgen Wildt
- Institut für Energie und Klimaforschung, IEK-8 , Forschungszentrum Jülich GmbH , Jülich 52425 , Germany
| | - Heikki Junninen
- Institute for Atmospheric and Earth System Research, Faculty of Science , University of Helsinki , Helsinki 00014 , Finland.,Institute of Physics , University of Tartu , Tartu 50090 , Estonia
| | - Tuija Jokinen
- Institute for Atmospheric and Earth System Research, Faculty of Science , University of Helsinki , Helsinki 00014 , Finland
| | - Markku Kulmala
- Institute for Atmospheric and Earth System Research, Faculty of Science , University of Helsinki , Helsinki 00014 , Finland.,Aerosol and Haze Laboratory , University of Chemical Technology , Beijing 100029 , P.R. China
| | - Douglas R Worsnop
- Institute for Atmospheric and Earth System Research, Faculty of Science , University of Helsinki , Helsinki 00014 , Finland.,Aerodyne Research Inc. , Billerica , Massachusetts 01821 , United States
| | - Joel A Thornton
- Department of Atmospheric Sciences , University of Washington , Seattle , Washington 98195 , United States
| | - Neil Donahue
- Center for Atmospheric Particle Studies , Carnegie Mellon University , Pittsburgh , Pennsylvania 15213 , United States
| | - Henrik G Kjaergaard
- Department of Chemistry , University of Cøpenhagen , Cøpenhagen 2100 , Denmark
| | - Mikael Ehn
- Institute for Atmospheric and Earth System Research, Faculty of Science , University of Helsinki , Helsinki 00014 , Finland
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32
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Lin X, Yang Z, Yu H, Gai Y, Zhang W. Mechanism and kinetics of the atmospheric reaction of 1,3,5-trimethylbenzene bicyclic peroxy radical with OH. RSC Adv 2019; 9:32594-32600. [PMID: 35529717 PMCID: PMC9073362 DOI: 10.1039/c9ra06562h] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2019] [Accepted: 10/07/2019] [Indexed: 01/03/2023] Open
Abstract
The bicyclic peroxy radical (BPR) is the key intermediate during atmospheric oxidation of aromatics. In this paper, the reaction mechanisms and kinetics of the atmospheric reaction of the 1,3,5-trimethylbenzene (1,3,5-TMB) BPR with the OH radical were studied by density functional theory (DFT) and conventional transition-state theory (CTST) calculations. The product channels of formation of the 1,3,5-TMB trioxide (ROOOH), OH-adducts and Criegee intermediate (CI) have been identified, and the geometries and energies of all the stationary points were calculated at the M08-HX/6-311 + g(2df,2p) level of theory. In addition, the rate constants for the individual reaction pathway at 298 K were calculated. The results showed that OH addition reactions including the formation of ROOOH and OH-adducts are the main pathways, whereas Criegee intermediate formation is of minor importance. The major pathways in the reaction of the 1,3,5-trimethylbenzene bicyclic peroxy radical with OH.![]()
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Affiliation(s)
- Xiaoxiao Lin
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics and Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Zhenli Yang
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics and Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Hui Yu
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics and Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Yanbo Gai
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics and Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | - Weijun Zhang
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics and Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
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33
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Rink WM, Thomas F. Decoration of Coiled-Coil Peptides with N-Cysteine Peptide Thioesters As Cyclic Peptide Precursors Using Copper-Catalyzed Azide-Alkyne Cycloaddition (CuAAC) Click Reaction. Org Lett 2018; 20:7493-7497. [PMID: 30407016 DOI: 10.1021/acs.orglett.8b03261] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The development of a copper-catalyzed azide-alkyne cycloaddition (CuAAC) protocol for the decoration of coiled coils with N-cysteine peptide thioesters as cyclic peptide precursors is presented. The reaction conditions include tert-butanol/PBS as the solvent and CuSO4/THPTA/ascorbate as the catalytic system. During these studies, partial formylation of N-terminal cysteine peptides is observed. Mechanistic analysis leads to identification of the formyl source and, hence, to the development of reaction conditions, under which the undesired side reaction was suppressed.
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Affiliation(s)
- W Mathis Rink
- Institute of Organic and Biomolecular Chemistry, Georg-August Universität Göttingen , Tammannstraße 2 , 37077 Göttingen , Germany
| | - Franziska Thomas
- Institute of Organic and Biomolecular Chemistry, Georg-August Universität Göttingen , Tammannstraße 2 , 37077 Göttingen , Germany.,Center for Biostructural Imaging of Neurodegeneration , von-Siebold-Straße 3a , 37075 Göttingen , Germany
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34
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Anglada JM, Solé A. Tropospheric oxidation of methyl hydrotrioxide (CH 3OOOH) by hydroxyl radical. Phys Chem Chem Phys 2018; 20:27406-27417. [PMID: 30357171 DOI: 10.1039/c8cp04486d] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We have employed high level theoretical methods to investigate the oxidation of methyl hydrotrioxide by hydroxyl radical, which is of interest in atmospheric chemistry research. The reaction can proceed by abstraction of either the terminal hydrogen atom of OOH group producing CH3O, O2 and H2O, or one hydrogen atom of the CH3 group forming H2CO, HO2 and H2O. The rate constants for both reactions at 298 K are computed to be 4.7 × 10-11 and 2.1 × 10-12 cm3 molecule-1 s-1, respectively, that is, the abstraction of terminal hydrogen atom of the OOH group is about 22 times faster than that of a hydrogen atom of the CH3 group. The rate constant for the overall CH3OOOH + OH reaction is computed to be 4.9 × 10-11 cm3 molecule-1 s-1. Our calculations predict branching ratios between 99.0 and 93.9% for the formation of methoxy radical plus molecular oxygen and water, and between 1.0 and 6.1% for the formation of formaldehyde plus hydroperoxyl radical and water, in the 225-325 K temperature range. The lifetime of CH3OOOH in the troposphere is predicted to range from of 1.8 hours at 225 K, up to 3.9 hours at 275 K and decreasing to 0.2 hours at 310 K. CH3OOO and CH2OOOH radicals have been also investigated.
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Affiliation(s)
- Josep M Anglada
- Departament de Química Biològica, (IQAC - CSIC), Jordi Girona, 18-26, E-08034 Barcelona, Spain.
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35
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Caravan RL, Khan MAH, Zádor J, Sheps L, Antonov IO, Rotavera B, Ramasesha K, Au K, Chen MW, Rösch D, Osborn DL, Fittschen C, Schoemaecker C, Duncianu M, Grira A, Dusanter S, Tomas A, Percival CJ, Shallcross DE, Taatjes CA. The reaction of hydroxyl and methylperoxy radicals is not a major source of atmospheric methanol. Nat Commun 2018; 9:4343. [PMID: 30341291 PMCID: PMC6195545 DOI: 10.1038/s41467-018-06716-x] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2018] [Accepted: 08/05/2018] [Indexed: 11/18/2022] Open
Abstract
Methanol is a benchmark for understanding tropospheric oxidation, but is underpredicted by up to 100% in atmospheric models. Recent work has suggested this discrepancy can be reconciled by the rapid reaction of hydroxyl and methylperoxy radicals with a methanol branching fraction of 30%. However, for fractions below 15%, methanol underprediction is exacerbated. Theoretical investigations of this reaction are challenging because of intersystem crossing between singlet and triplet surfaces - ∼45% of reaction products are obtained via intersystem crossing of a pre-product complex - which demands experimental determinations of product branching. Here we report direct measurements of methanol from this reaction. A branching fraction below 15% is established, consequently highlighting a large gap in the understanding of global methanol sources. These results support the recent high-level theoretical work and substantially reduce its uncertainties.
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Affiliation(s)
- Rebecca L Caravan
- Combustion Research Facility, Mailstop 9055, Sandia National Laboratories, Livermore, CA, 94551, USA.
| | - M Anwar H Khan
- School of Chemistry, Cantock's Close, University of Bristol, Bristol, BS8 1TS, UK
| | - Judit Zádor
- Combustion Research Facility, Mailstop 9055, Sandia National Laboratories, Livermore, CA, 94551, USA
| | - Leonid Sheps
- Combustion Research Facility, Mailstop 9055, Sandia National Laboratories, Livermore, CA, 94551, USA
| | - Ivan O Antonov
- Combustion Research Facility, Mailstop 9055, Sandia National Laboratories, Livermore, CA, 94551, USA
| | - Brandon Rotavera
- Combustion Research Facility, Mailstop 9055, Sandia National Laboratories, Livermore, CA, 94551, USA
| | - Krupa Ramasesha
- Combustion Research Facility, Mailstop 9055, Sandia National Laboratories, Livermore, CA, 94551, USA
| | - Kendrew Au
- Combustion Research Facility, Mailstop 9055, Sandia National Laboratories, Livermore, CA, 94551, USA
| | - Ming-Wei Chen
- Combustion Research Facility, Mailstop 9055, Sandia National Laboratories, Livermore, CA, 94551, USA
| | - Daniel Rösch
- Combustion Research Facility, Mailstop 9055, Sandia National Laboratories, Livermore, CA, 94551, USA
| | - David L Osborn
- Combustion Research Facility, Mailstop 9055, Sandia National Laboratories, Livermore, CA, 94551, USA
| | - Christa Fittschen
- Université Lille, CNRS, UMR 8522-PC2A-Physicochimie des Processus de Combustion et de l'Atmosphère, 59000, Lille, France
| | - Coralie Schoemaecker
- Université Lille, CNRS, UMR 8522-PC2A-Physicochimie des Processus de Combustion et de l'Atmosphère, 59000, Lille, France
| | - Marius Duncianu
- IMT Lille Douai, Université Lille, Département Sciences de l'Atmosphère et Génie de l'Environnement (SAGE), 59000, Lille, France
| | - Asma Grira
- IMT Lille Douai, Université Lille, Département Sciences de l'Atmosphère et Génie de l'Environnement (SAGE), 59000, Lille, France
| | - Sebastien Dusanter
- IMT Lille Douai, Université Lille, Département Sciences de l'Atmosphère et Génie de l'Environnement (SAGE), 59000, Lille, France
| | - Alexandre Tomas
- IMT Lille Douai, Université Lille, Département Sciences de l'Atmosphère et Génie de l'Environnement (SAGE), 59000, Lille, France
| | - Carl J Percival
- Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Drive, Pasadena, CA, 91109, USA
| | - Dudley E Shallcross
- School of Chemistry, Cantock's Close, University of Bristol, Bristol, BS8 1TS, UK.
| | - Craig A Taatjes
- Combustion Research Facility, Mailstop 9055, Sandia National Laboratories, Livermore, CA, 94551, USA.
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36
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Assaf E, Schoemaecker C, Vereecken L, Fittschen C. Experimental and theoretical investigation of the reaction of RO2radicals with OH radicals: Dependence of the HO2yield on the size of the alkyl group. INT J CHEM KINET 2018. [DOI: 10.1002/kin.21191] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Emmanuel Assaf
- Université Lille; CNRS; UMR 8522, PC2A - Physicochimie des Processus de Combustion et de l'Atmosphère; Lille France
| | - Coralie Schoemaecker
- Université Lille; CNRS; UMR 8522, PC2A - Physicochimie des Processus de Combustion et de l'Atmosphère; Lille France
| | - Luc Vereecken
- Institut für Energie und Klimaforschung; Forschungszentrum Jülich GmbH; Jülich Germany
| | - Christa Fittschen
- Université Lille; CNRS; UMR 8522, PC2A - Physicochimie des Processus de Combustion et de l'Atmosphère; Lille France
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37
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Zhao Z, Song J, Su B, Wang X, Li Z. Mechanistic Study of the Reactions of Methyl Peroxy Radical with Methanol or Hydroxyl Methyl Radical. J Phys Chem A 2018; 122:5078-5088. [DOI: 10.1021/acs.jpca.7b09988] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Zhongrui Zhao
- State Key Laboratory of Engines, Tianjin University, Tianjin, China 300072
| | - Jinou Song
- State Key Laboratory of Engines, Tianjin University, Tianjin, China 300072
| | - Boyang Su
- State Key Laboratory of Engines, Tianjin University, Tianjin, China 300072
| | - Xiaowen Wang
- State Key Laboratory of Engines, Tianjin University, Tianjin, China 300072
| | - Zhijun Li
- State Key Laboratory of Engines, Tianjin University, Tianjin, China 300072
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38
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Assaf E, Schoemaecker C, Vereecken L, Fittschen C. The reaction of fluorine atoms with methanol: yield of CH3O/CH2OH and rate constant of the reactions CH3O + CH3O and CH3O + HO2. Phys Chem Chem Phys 2018; 20:10660-10670. [DOI: 10.1039/c7cp05770a] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Measurement and theory of CH3O + HO2 and CH3O + CH3O reactions, product yields for F + CH3OH.
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Affiliation(s)
- Emmanuel Assaf
- Université Lille
- CNRS
- UMR 8522 – PC2A – Physicochimie des Processus de Combustion et de l’Atmosphère
- F-59000 Lille
- France
| | - Coralie Schoemaecker
- Université Lille
- CNRS
- UMR 8522 – PC2A – Physicochimie des Processus de Combustion et de l’Atmosphère
- F-59000 Lille
- France
| | - Luc Vereecken
- Institut für Energie und Klimaforschung
- Forschungszentrum Jülich GmbH
- D-52428 Jülich
- Germany
| | - Christa Fittschen
- Université Lille
- CNRS
- UMR 8522 – PC2A – Physicochimie des Processus de Combustion et de l’Atmosphère
- F-59000 Lille
- France
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39
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Zhang Y, Song R, Sun Y, Sun J, Tang Y, Liu YG, Wang R. Mechanistic and kinetic study on the reaction of methylperoxyl radical with atomic hydrogen. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2017.09.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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40
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Anderson DC, Nicely JM, Wolfe GM, Hanisco TF, Salawitch RJ, Canty TP, Dickerson RR, Apel EC, Baidar S, Bannan TJ, Blake NJ, Chen D, Dix B, Fernandez RP, Hall SR, Hornbrook RS, Huey LG, Josse B, Jöckel P, Kinnison DE, Koenig TK, LeBreton M, Marécal V, Morgenstern O, Oman LD, Pan LL, Percival C, Plummer D, Revell LE, Rozanov E, Saiz-Lopez A, Stenke A, Sudo K, Tilmes S, Ullmann K, Volkamer R, Weinheimer AJ, Zeng G. Formaldehyde in the Tropical Western Pacific: Chemical sources and sinks, convective transport, and representation in CAM-Chem and the CCMI models. JOURNAL OF GEOPHYSICAL RESEARCH. ATMOSPHERES : JGR 2017. [PMID: 29527424 DOI: 10.1002/2017ja024474] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Formaldehyde (HCHO) directly affects the atmospheric oxidative capacity through its effects on HOx. In remote marine environments, such as the Tropical Western Pacific (TWP), it is particularly important to understand the processes controlling the abundance of HCHO because model output from these regions is used to correct satellite retrievals of HCHO. Here, we have used observations from the CONTRAST field campaign, conducted during January and February 2014, to evaluate our understanding of the processes controlling the distribution of HCHO in the TWP as well as its representation in chemical transport/climate models. Observed HCHO mixing ratios varied from ~500 pptv near the surface to ~75 pptv in the upper troposphere. Recent convective transport of near surface HCHO and its precursors, acetaldehyde and possibly methyl hydroperoxide, increased upper tropospheric HCHO mixing ratios by ~33% (22 pptv); this air contained roughly 60% less NO than more aged air. Output from the CAM-Chem chemistry transport model (2014 meteorology) as well as nine chemistry climate models from the Chemistry-Climate Model Initiative (free-running meteorology) are found to uniformly underestimate HCHO columns derived from in situ observations by between 4 and 50%. This underestimate of HCHO likely results from a near factor of two underestimate of NO in most models, which strongly suggests errors in NOx emissions inventories and/or in the model chemical mechanisms. Likewise, the lack of oceanic acetaldehyde emissions and potential errors in the model acetaldehyde chemistry lead to additional underestimates in modeled HCHO of up to 75 pptv (~15%) in the lower troposphere.
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Affiliation(s)
- Daniel C Anderson
- Department of Atmospheric and Oceanic Science, University of Maryland, College Park, Maryland, USA
| | - Julie M Nicely
- Atmospheric Chemistry and Dynamics Laboratory, NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
- Universities Space Research Association, Columbia, Maryland, USA
| | - Glenn M Wolfe
- Atmospheric Chemistry and Dynamics Laboratory, NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
- Joint Center for Earth Systems Technology, University of Maryland Baltimore County, Baltimore, Maryland, USA
| | - Thomas F Hanisco
- Atmospheric Chemistry and Dynamics Laboratory, NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
| | - Ross J Salawitch
- Department of Atmospheric and Oceanic Science, University of Maryland, College Park, Maryland, USA
- Earth System Science Interdisciplinary Center, University of Maryland, College Park, Maryland, USA
- Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland, USA
| | - Timothy P Canty
- Department of Atmospheric and Oceanic Science, University of Maryland, College Park, Maryland, USA
| | - Russell R Dickerson
- Department of Atmospheric and Oceanic Science, University of Maryland, College Park, Maryland, USA
| | - Eric C Apel
- National Center for Atmospheric Research, Boulder, Colorado, USA
| | - Sunil Baidar
- Department of Chemistry, University of Colorado, Boulder, Colorado, USA
- Cooperative Institute for Research in Environmental Sciences, Boulder, Colorado, USA
| | | | - Nicola J Blake
- Department of Chemistry, University of California, Irvine, California, USA
| | - Dexian Chen
- School of Earth & Atmospheric Sciences, Georgia Institute of Technology, Atlanta, Georgia, USA
| | - Barbara Dix
- Department of Chemistry, University of Colorado, Boulder, Colorado, USA
| | - Rafael P Fernandez
- Department of Atmospheric Chemistry and Climate, Institute of Physical Chemistry Rocasolano, CSIC, Madrid, Spain
- Department of Natural Science, National Research Council (CONICET), FCEN-UNCuyo, Mendoza, Argentina
| | - Samuel R Hall
- National Center for Atmospheric Research, Boulder, Colorado, USA
| | | | - L Gregory Huey
- School of Earth & Atmospheric Sciences, Georgia Institute of Technology, Atlanta, Georgia, USA
| | - Beatrice Josse
- Centre National de Recherche Météorologique, UMR3589, Méteo-France-CNRS, Toulouse, France
| | - Patrick Jöckel
- Deutsches Zentrum für Luft- und Raumfahrt (DLR), Institut für Physik der Atmosphäre, Oberpfaffenhofen, Germany
| | | | - Theodore K Koenig
- Department of Chemistry, University of Colorado, Boulder, Colorado, USA
- Cooperative Institute for Research in Environmental Sciences, Boulder, Colorado, USA
| | - Michael LeBreton
- Department of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden
| | - Virginie Marécal
- Centre National de Recherche Météorologique, UMR3589, Méteo-France-CNRS, Toulouse, France
| | - Olaf Morgenstern
- National Institute of Water and Atmospheric Research, Wellington, New Zealand
| | - Luke D Oman
- Atmospheric Chemistry and Dynamics Laboratory, NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
| | - Laura L Pan
- National Center for Atmospheric Research, Boulder, Colorado, USA
| | - Carl Percival
- Department of Chemistry, University of Manchester, UK
| | - David Plummer
- Canadian Centre for Climate Modeling and Analysis, Environment Canada, Victoria, British Columbia, Canada
| | - Laura E Revell
- Bodeker Scientific, Alexandra, New Zealand
- ETH Zürich, Institute for Atmospheric and Climate Science, Zürich, Switzerland
| | - Eugene Rozanov
- ETH Zürich, Institute for Atmospheric and Climate Science, Zürich, Switzerland
- Physikalisch-Meteorologisches Observatorium Davos World Radiation Centre, Davos Dorf, Switzerland
| | - Alfonso Saiz-Lopez
- Department of Atmospheric Chemistry and Climate, Institute of Physical Chemistry Rocasolano, CSIC, Madrid, Spain
| | - Andrea Stenke
- ETH Zürich, Institute for Atmospheric and Climate Science, Zürich, Switzerland
| | - Kengo Sudo
- Nagoya University, Graduate School of Environmental Studies, Nagoya, Japan
- Japan Marine-Earth Science and Technology, Yokohama, Japan
| | - Simone Tilmes
- National Center for Atmospheric Research, Boulder, Colorado, USA
| | - Kirk Ullmann
- National Center for Atmospheric Research, Boulder, Colorado, USA
| | - Rainer Volkamer
- Department of Chemistry, University of Colorado, Boulder, Colorado, USA
- Cooperative Institute for Research in Environmental Sciences, Boulder, Colorado, USA
| | | | - Guang Zeng
- National Institute of Water and Atmospheric Research, Wellington, New Zealand
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41
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Anderson DC, Nicely JM, Wolfe GM, Hanisco TF, Salawitch RJ, Canty TP, Dickerson RR, Apel EC, Baidar S, Bannan TJ, Blake NJ, Chen D, Dix B, Fernandez RP, Hall SR, Hornbrook RS, Huey LG, Josse B, Jöckel P, Kinnison DE, Koenig TK, LeBreton M, Marécal V, Morgenstern O, Oman LD, Pan LL, Percival C, Plummer D, Revell LE, Rozanov E, Saiz-Lopez A, Stenke A, Sudo K, Tilmes S, Ullmann K, Volkamer R, Weinheimer AJ, Zeng G. Formaldehyde in the Tropical Western Pacific: Chemical sources and sinks, convective transport, and representation in CAM-Chem and the CCMI models. JOURNAL OF GEOPHYSICAL RESEARCH. ATMOSPHERES : JGR 2017; 122:11201-11226. [PMID: 29527424 PMCID: PMC5839129 DOI: 10.1002/2016jd026121] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Formaldehyde (HCHO) directly affects the atmospheric oxidative capacity through its effects on HOx. In remote marine environments, such as the Tropical Western Pacific (TWP), it is particularly important to understand the processes controlling the abundance of HCHO because model output from these regions is used to correct satellite retrievals of HCHO. Here, we have used observations from the CONTRAST field campaign, conducted during January and February 2014, to evaluate our understanding of the processes controlling the distribution of HCHO in the TWP as well as its representation in chemical transport/climate models. Observed HCHO mixing ratios varied from ~500 pptv near the surface to ~75 pptv in the upper troposphere. Recent convective transport of near surface HCHO and its precursors, acetaldehyde and possibly methyl hydroperoxide, increased upper tropospheric HCHO mixing ratios by ~33% (22 pptv); this air contained roughly 60% less NO than more aged air. Output from the CAM-Chem chemistry transport model (2014 meteorology) as well as nine chemistry climate models from the Chemistry-Climate Model Initiative (free-running meteorology) are found to uniformly underestimate HCHO columns derived from in situ observations by between 4 and 50%. This underestimate of HCHO likely results from a near factor of two underestimate of NO in most models, which strongly suggests errors in NOx emissions inventories and/or in the model chemical mechanisms. Likewise, the lack of oceanic acetaldehyde emissions and potential errors in the model acetaldehyde chemistry lead to additional underestimates in modeled HCHO of up to 75 pptv (~15%) in the lower troposphere.
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Affiliation(s)
- Daniel C Anderson
- Department of Atmospheric and Oceanic Science, University of Maryland, College Park, Maryland, USA
| | - Julie M Nicely
- Atmospheric Chemistry and Dynamics Laboratory, NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
- Universities Space Research Association, Columbia, Maryland, USA
| | - Glenn M Wolfe
- Atmospheric Chemistry and Dynamics Laboratory, NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
- Joint Center for Earth Systems Technology, University of Maryland Baltimore County, Baltimore, Maryland, USA
| | - Thomas F Hanisco
- Atmospheric Chemistry and Dynamics Laboratory, NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
| | - Ross J Salawitch
- Department of Atmospheric and Oceanic Science, University of Maryland, College Park, Maryland, USA
- Earth System Science Interdisciplinary Center, University of Maryland, College Park, Maryland, USA
- Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland, USA
| | - Timothy P Canty
- Department of Atmospheric and Oceanic Science, University of Maryland, College Park, Maryland, USA
| | - Russell R Dickerson
- Department of Atmospheric and Oceanic Science, University of Maryland, College Park, Maryland, USA
| | - Eric C Apel
- National Center for Atmospheric Research, Boulder, Colorado, USA
| | - Sunil Baidar
- Department of Chemistry, University of Colorado, Boulder, Colorado, USA
- Cooperative Institute for Research in Environmental Sciences, Boulder, Colorado, USA
| | | | - Nicola J Blake
- Department of Chemistry, University of California, Irvine, California, USA
| | - Dexian Chen
- School of Earth & Atmospheric Sciences, Georgia Institute of Technology, Atlanta, Georgia, USA
| | - Barbara Dix
- Department of Chemistry, University of Colorado, Boulder, Colorado, USA
| | - Rafael P Fernandez
- Department of Atmospheric Chemistry and Climate, Institute of Physical Chemistry Rocasolano, CSIC, Madrid, Spain
- Department of Natural Science, National Research Council (CONICET), FCEN-UNCuyo, Mendoza, Argentina
| | - Samuel R Hall
- National Center for Atmospheric Research, Boulder, Colorado, USA
| | | | - L Gregory Huey
- School of Earth & Atmospheric Sciences, Georgia Institute of Technology, Atlanta, Georgia, USA
| | - Beatrice Josse
- Centre National de Recherche Météorologique, UMR3589, Méteo-France-CNRS, Toulouse, France
| | - Patrick Jöckel
- Deutsches Zentrum für Luft- und Raumfahrt (DLR), Institut für Physik der Atmosphäre, Oberpfaffenhofen, Germany
| | | | - Theodore K Koenig
- Department of Chemistry, University of Colorado, Boulder, Colorado, USA
- Cooperative Institute for Research in Environmental Sciences, Boulder, Colorado, USA
| | - Michael LeBreton
- Department of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden
| | - Virginie Marécal
- Centre National de Recherche Météorologique, UMR3589, Méteo-France-CNRS, Toulouse, France
| | - Olaf Morgenstern
- National Institute of Water and Atmospheric Research, Wellington, New Zealand
| | - Luke D Oman
- Atmospheric Chemistry and Dynamics Laboratory, NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
| | - Laura L Pan
- National Center for Atmospheric Research, Boulder, Colorado, USA
| | - Carl Percival
- Department of Chemistry, University of Manchester, UK
| | - David Plummer
- Canadian Centre for Climate Modeling and Analysis, Environment Canada, Victoria, British Columbia, Canada
| | - Laura E Revell
- Bodeker Scientific, Alexandra, New Zealand
- ETH Zürich, Institute for Atmospheric and Climate Science, Zürich, Switzerland
| | - Eugene Rozanov
- ETH Zürich, Institute for Atmospheric and Climate Science, Zürich, Switzerland
- Physikalisch-Meteorologisches Observatorium Davos World Radiation Centre, Davos Dorf, Switzerland
| | - Alfonso Saiz-Lopez
- Department of Atmospheric Chemistry and Climate, Institute of Physical Chemistry Rocasolano, CSIC, Madrid, Spain
| | - Andrea Stenke
- ETH Zürich, Institute for Atmospheric and Climate Science, Zürich, Switzerland
| | - Kengo Sudo
- Nagoya University, Graduate School of Environmental Studies, Nagoya, Japan
- Japan Marine-Earth Science and Technology, Yokohama, Japan
| | - Simone Tilmes
- National Center for Atmospheric Research, Boulder, Colorado, USA
| | - Kirk Ullmann
- National Center for Atmospheric Research, Boulder, Colorado, USA
| | - Rainer Volkamer
- Department of Chemistry, University of Colorado, Boulder, Colorado, USA
- Cooperative Institute for Research in Environmental Sciences, Boulder, Colorado, USA
| | | | - Guang Zeng
- National Institute of Water and Atmospheric Research, Wellington, New Zealand
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42
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Würmel J, Simmie JM. H-Atom Abstraction Reactions by Ground-State Ozone from Saturated Oxygenates. J Phys Chem A 2017; 121:8053-8060. [DOI: 10.1021/acs.jpca.7b07760] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- J. Würmel
- Galway Mayo Institute of Technology, Galway H91 T8NW, Ireland
| | - J. M. Simmie
- School
of Chemistry, National University of Ireland, Galway H91 TK33, Ireland
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43
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Chen L, Huang Y, Xue Y, Cao J, Wang W. Competition between HO2 and H2O2 Reactions with CH2OO/anti-CH3CHOO in the Oligomer Formation: A Theoretical Perspective. J Phys Chem A 2017; 121:6981-6991. [DOI: 10.1021/acs.jpca.7b05951] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Long Chen
- Key Lab of Aerosol Chemistry & Physics, Institute of Earth Environment, Chinese Academy of Sciences, Xi’an, Shaanxi 710061, China
- State
Key Laboratory of Loess and Quaternary Geology, Institute of Earth Environment, Chinese Academy of Sciences, Xi’an, Shaanxi 710061, China
| | - Yu Huang
- Key Lab of Aerosol Chemistry & Physics, Institute of Earth Environment, Chinese Academy of Sciences, Xi’an, Shaanxi 710061, China
- State
Key Laboratory of Loess and Quaternary Geology, Institute of Earth Environment, Chinese Academy of Sciences, Xi’an, Shaanxi 710061, China
| | - Yonggang Xue
- Key Lab of Aerosol Chemistry & Physics, Institute of Earth Environment, Chinese Academy of Sciences, Xi’an, Shaanxi 710061, China
- State
Key Laboratory of Loess and Quaternary Geology, Institute of Earth Environment, Chinese Academy of Sciences, Xi’an, Shaanxi 710061, China
| | - Junji Cao
- Key Lab of Aerosol Chemistry & Physics, Institute of Earth Environment, Chinese Academy of Sciences, Xi’an, Shaanxi 710061, China
- State
Key Laboratory of Loess and Quaternary Geology, Institute of Earth Environment, Chinese Academy of Sciences, Xi’an, Shaanxi 710061, China
| | - Wenliang Wang
- School
of Chemistry and Chemical Engineering, Key Laboratory for Macromolecular
Science of Shaanxi Province, Shaanxi Normal University, Xi’an, Shaanxi 710119, China
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44
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Computational study on mechanisms of C2H5O2+OH reaction and properties of C2H5O3H complex. Chem Res Chin Univ 2017. [DOI: 10.1007/s40242-017-7055-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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45
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Assaf E, Sheps L, Whalley L, Heard D, Tomas A, Schoemaecker C, Fittschen C. The Reaction between CH 3O 2 and OH Radicals: Product Yields and Atmospheric Implications. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2017; 51:2170-2177. [PMID: 28121426 DOI: 10.1021/acs.est.6b06265] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
The reaction between CH3O2 and OH radicals has been shown to be fast and to play an appreciable role for the removal of CH3O2 radials in remote environments such as the marine boundary layer. Two different experimental techniques have been used here to determine the products of this reaction. The HO2 yield has been obtained from simultaneous time-resolved measurements of the absolute concentration of CH3O2, OH, and HO2 radicals by cw-CRDS. The possible formation of a Criegee intermediate has been measured by broadband cavity enhanced UV absorption. A yield of ϕHO2 = (0.8 ± 0.2) and an upper limit for ϕCriegee = 0.05 has been determined for this reaction, suggesting a minor yield of methanol or stabilized trioxide as a product. The impact of this reaction on the composition of the remote marine boundary layer has been determined by implementing these findings into a box model utilizing the Master Chemical Mechanism v3.2, and constraining the model for conditions found at the Cape Verde Atmospheric Observatory in the remote tropical Atlantic Ocean. Inclusion of the CH3O2+OH reaction into the model results in up to 30% decrease in the CH3O2 radical concentration while the HO2 concentration increased by up to 20%. Production and destruction of O3 are also influenced by these changes, and the model indicates that taking into account the reaction between CH3O2 and OH leads to a 6% decrease of O3.
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Affiliation(s)
- Emmanuel Assaf
- Université Lille, CNRS, UMR 8522 - PC2A - Physicochimie des Processus de Combustion et de l'Atmosphère, F-59000 Lille, France
| | - Leonid Sheps
- Combustion Research Facility, Sandia National Laboratories , 7011 East Ave., Livermore, California 94551 United States
| | - Lisa Whalley
- School of Chemistry, University of Leeds , Woodhouse Lane, Leeds, LS2 9JT, U.K
- National Centre for Atmospheric Chemistry, University of Leeds , Woodhouse Lane, Leeds, LS2 9JT, U.K
| | - Dwayne Heard
- School of Chemistry, University of Leeds , Woodhouse Lane, Leeds, LS2 9JT, U.K
- National Centre for Atmospheric Chemistry, University of Leeds , Woodhouse Lane, Leeds, LS2 9JT, U.K
| | - Alexandre Tomas
- IMT Lille Douai, Université Lille, SAGE - Département Sciences de l'Atmosphère et Génie de l'Environnement, 59000 Lille, France
| | - Coralie Schoemaecker
- Université Lille, CNRS, UMR 8522 - PC2A - Physicochimie des Processus de Combustion et de l'Atmosphère, F-59000 Lille, France
| | - Christa Fittschen
- Université Lille, CNRS, UMR 8522 - PC2A - Physicochimie des Processus de Combustion et de l'Atmosphère, F-59000 Lille, France
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46
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Jara-Toro RA, Hernández FJ, Taccone RA, Lane SI, Pino GA. Water Catalysis of the Reaction between Methanol and OH at 294 K and the Atmospheric Implications. Angew Chem Int Ed Engl 2017; 56:2166-2170. [DOI: 10.1002/anie.201612151] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2016] [Indexed: 11/08/2022]
Affiliation(s)
- Rafael A. Jara-Toro
- INFIQC (CONICET-UNC). Dpto. de Fisicoquímica-; Facultad de Ciencias Químicas-; Centro Láser de Ciencias Moleculares-; Universidad Nacional de Córdoba; Ciudad Universitaria X5000HUA Córdoba Argentina
| | - Federico J. Hernández
- INFIQC (CONICET-UNC). Dpto. de Fisicoquímica-; Facultad de Ciencias Químicas-; Centro Láser de Ciencias Moleculares-; Universidad Nacional de Córdoba; Ciudad Universitaria X5000HUA Córdoba Argentina
| | - Raúl A. Taccone
- INFIQC (CONICET-UNC). Dpto. de Fisicoquímica-; Facultad de Ciencias Químicas-; Centro Láser de Ciencias Moleculares-; Universidad Nacional de Córdoba; Ciudad Universitaria X5000HUA Córdoba Argentina
| | - Silvia I. Lane
- INFIQC (CONICET-UNC). Dpto. de Fisicoquímica-; Facultad de Ciencias Químicas-; Centro Láser de Ciencias Moleculares-; Universidad Nacional de Córdoba; Ciudad Universitaria X5000HUA Córdoba Argentina
| | - Gustavo A. Pino
- INFIQC (CONICET-UNC). Dpto. de Fisicoquímica-; Facultad de Ciencias Químicas-; Centro Láser de Ciencias Moleculares-; Universidad Nacional de Córdoba; Ciudad Universitaria X5000HUA Córdoba Argentina
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47
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Jara-Toro RA, Hernández FJ, Taccone RA, Lane SI, Pino GA. Water Catalysis of the Reaction between Methanol and OH at 294 K and the Atmospheric Implications. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201612151] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Rafael A. Jara-Toro
- INFIQC (CONICET-UNC). Dpto. de Fisicoquímica-; Facultad de Ciencias Químicas-; Centro Láser de Ciencias Moleculares-; Universidad Nacional de Córdoba; Ciudad Universitaria X5000HUA Córdoba Argentina
| | - Federico J. Hernández
- INFIQC (CONICET-UNC). Dpto. de Fisicoquímica-; Facultad de Ciencias Químicas-; Centro Láser de Ciencias Moleculares-; Universidad Nacional de Córdoba; Ciudad Universitaria X5000HUA Córdoba Argentina
| | - Raúl A. Taccone
- INFIQC (CONICET-UNC). Dpto. de Fisicoquímica-; Facultad de Ciencias Químicas-; Centro Láser de Ciencias Moleculares-; Universidad Nacional de Córdoba; Ciudad Universitaria X5000HUA Córdoba Argentina
| | - Silvia I. Lane
- INFIQC (CONICET-UNC). Dpto. de Fisicoquímica-; Facultad de Ciencias Químicas-; Centro Láser de Ciencias Moleculares-; Universidad Nacional de Córdoba; Ciudad Universitaria X5000HUA Córdoba Argentina
| | - Gustavo A. Pino
- INFIQC (CONICET-UNC). Dpto. de Fisicoquímica-; Facultad de Ciencias Químicas-; Centro Láser de Ciencias Moleculares-; Universidad Nacional de Córdoba; Ciudad Universitaria X5000HUA Córdoba Argentina
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48
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Gomes GDP, Evoniuk CJ, Ly M, Alabugin IV. Changing the path of least resistance, or access to endo-dig products via a sequence of three exo-trig transition states: electronic effects in homoallyic ring expansion cascades of alkenyl isonitriles. Org Biomol Chem 2017; 15:4135-4143. [DOI: 10.1039/c7ob00527j] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Substituent effects reshape the potential energy surfaces for radical homoallylic expansion/fragmentation cascades that transform alkenyl isonitriles into N-heteroaromatics
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Affiliation(s)
| | | | - Michelle Ly
- Department of Chemistry and Biochemistry
- Florida State University
- Tallahassee
- USA
| | - Igor V. Alabugin
- Department of Chemistry and Biochemistry
- Florida State University
- Tallahassee
- USA
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49
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Hochlaf M. Advances in spectroscopy and dynamics of small and medium sized molecules and clusters. Phys Chem Chem Phys 2017; 19:21236-21261. [DOI: 10.1039/c7cp01980g] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Investigations of the spectroscopy and dynamics of small- and medium-sized molecules and clusters represent a hot topic in atmospheric chemistry, biology, physics, atto- and femto-chemistry and astrophysics.
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Affiliation(s)
- Majdi Hochlaf
- Université Paris-Est
- Laboratoire Modélisation et Simulation Multi Echelle
- MSME UMR 8208 CNRS
- 77454 Marne-la-Vallée
- France
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50
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Assaf E, Song B, Tomas A, Schoemaecker C, Fittschen C. Rate Constant of the Reaction between CH 3O 2 Radicals and OH Radicals Revisited. J Phys Chem A 2016; 120:8923-8932. [PMID: 27790905 DOI: 10.1021/acs.jpca.6b07704] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The reaction between CH3O2 and OH radicals has been studied in a laser photolysis cell using the reaction of F atoms with CH4 and H2O for the simultaneous generation of both radicals, with F atoms generated through 248 nm photolysis of XeF2. An experimental setup combining cw-Cavity Ring Down Spectroscopy (cw-CRDS) and high repetition rate laser-induced fluorescence (LIF) to a laser photolysis cell has been used. The absolute concentration of CH3O2 was measured by cw-CRDS, while the relative concentration of OH(v = 0) radicals was determined by LIF. To remove dubiety from the quantification of CH3O2 by cw-CRDS in the near-infrared, its absorption cross section has been determined at 7489.16 cm-1 using two different methods. A rate constant of k1 = (1.60 ± 0.4) × 10-10 cm3 s-1 has been determined at 295 K, nearly a factor of 2 lower than an earlier determination from our group ((2.8 ± 1.4) × 10-10 cm3 s-1) using CH3I photolysis as a precursor. Quenching of electronically excited I atoms (from CH3I photolysis) in collision with OH(v = 0) is suspected to be responsible for a bias in the earlier, fast rate constant.
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Affiliation(s)
- Emmanuel Assaf
- Université Lille , CNRS, UMR 8522-PC2A-Physicochimie des Processus de Combustion et de l'Atmosphère, F-59000 Lille, France
| | - Bo Song
- Université Lille , CNRS, UMR 8522-PC2A-Physicochimie des Processus de Combustion et de l'Atmosphère, F-59000 Lille, France
| | - Alexandre Tomas
- Mines Douai , Département Sciences de l'Atmosphère et Génie de l'Environnement (SAGE), F-59508 Douai, France.,Université Lille Nord de France , F-59000 Lille, France
| | - Coralie Schoemaecker
- Université Lille , CNRS, UMR 8522-PC2A-Physicochimie des Processus de Combustion et de l'Atmosphère, F-59000 Lille, France
| | - Christa Fittschen
- Université Lille , CNRS, UMR 8522-PC2A-Physicochimie des Processus de Combustion et de l'Atmosphère, F-59000 Lille, France
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