1
|
Zwaan F, Brune S, Glerum AC, Vasey DA, Naliboff JB, Manatschal G, Gaucher EC. Rift-inversion orogens are potential hot spots for natural H 2 generation. SCIENCE ADVANCES 2025; 11:eadr3418. [PMID: 39970211 DOI: 10.1126/sciadv.adr3418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2024] [Accepted: 01/17/2025] [Indexed: 02/21/2025]
Abstract
Naturally occurring hydrogen gas (H2) represents a potential source of clean energy. A promising mechanism for large-scale natural H2 generation is serpentinization of exhumed mantle material. We study this serpentinization-related H2 generation during rifting and subsequent rift-inversion orogen development using numerical geodynamic models. Serpentinization-related H2 generation is best known from rifted margins and spreading ridges. However, because orogens are colder than rift environments, conditions for serpentinization and natural H2 generation are considerably better in orogenic settings: We find that yearly H2 generation capacity from serpentinization in the overriding mantle wedge during rift inversion may be up to 20 times larger than during rifting. Moreover, suitable reservoirs and seals required for economic H2 accumulations to form are readily available in rift-inversion orogens but are likely absent during bulk serpentinization in rift settings. Together with indications of ongoing natural H2 generation in the Balkans and Pyrenees, our model results provide a first-order motivation for natural H2 exploration in rift-inversion orogens.
Collapse
Affiliation(s)
- Frank Zwaan
- GFZ Helmholtz Centre for Geosciences, Potsdam, Germany
- Department of Geosciences, University of Fribourg, Fribourg, Switzerland
| | - Sascha Brune
- GFZ Helmholtz Centre for Geosciences, Potsdam, Germany
- Institute of Geosciences, University of Potsdam, Potsdam, Germany
| | - Anne C Glerum
- GFZ Helmholtz Centre for Geosciences, Potsdam, Germany
| | - Dylan A Vasey
- Department of Earth and Climate Sciences, Tufts University, Medford, MA, USA
| | - John B Naliboff
- Department of Earth and Environmental Science, New Mexico Institute of Mining and Technology, Socorro, NM, USA
| | | | | |
Collapse
|
2
|
He Y, Li Y, Pan Y, Shang J, Sun W, Wang M, Fan H, Sanford RA, Wei N, Peng S, Xie D, Zhang W, Chen S, Liu Y, Jiang Z, Jiang Y, Hu Y, Li S, Hu N, Dong Y, Shi L. Intimate microbe-water-mineral interactions mediate alkalization in the pyroxene-rich iron ore mines in Panxi area, Southwest China. JOURNAL OF HAZARDOUS MATERIALS 2024; 480:136127. [PMID: 39405720 DOI: 10.1016/j.jhazmat.2024.136127] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2024] [Revised: 09/15/2024] [Accepted: 10/08/2024] [Indexed: 12/01/2024]
Abstract
In contrast to acid mine drainage, the microbial assembly and (bio)geochemical processes in alkaline mine conditions remain under-investigated. Here, microbe-water-mineral interactions were systematically investigated in two representative iron mines with alkaline conditions in the Panxi mining area, Southwest China. Compared to reference riverine samples less interfered by mining activities, the iron ore samples, composed of vanadium-titanium magnetite and pyroxene-rich bedrocks, exhibited elevated levels of Fe, HCl-extractable Fe(II), total sulfur, nitrate and sulfate, but lower total carbon (TC). Meanwhile, the mine drainage showed significantly higher sulfate, but lower TC concentrations than the riverine samples. Intriguingly, the Serpentinimonas spp., typically reported in serpentinites, prevailed in the microbial communities from the mine samples exhibiting higher pH. This suggests that the alkaline environments in Panxi mines result from serpentinization-like reactions. Enrichment of Thiobacillus spp. was observed in the mine-dwelling microbial communities, positively correlated with total sulfur, sulfate, nitrate, and Fe(II). Genome-resolved metagenomics suggested a chemoautotrophic lifestyle for the Thiobacillus species (e.g., carbon fixation, sulfur oxidation, and oxygen respiration), which may generate H+ and mitigate alkalization. This study provides valuable insights into progressive development of alkaline mine ecosystems and offers guidance for developing appropriate engineering strategies to restore the abandoned alkaline mines.
Collapse
Affiliation(s)
- Yu He
- School of Environmental Studies, China University of Geosciences, Wuhan, China
| | - Yongzhe Li
- School of Environmental Studies, China University of Geosciences, Wuhan, China; Central & South China Municipal Engineering Design and Research Institute Co, Ltd., Wuhan, China
| | - Yue Pan
- College of Land Science and Technology, China Agricultural University, Beijing, China
| | - Jianying Shang
- College of Land Science and Technology, China Agricultural University, Beijing, China; Key Laboratory of Arable Land Conservation in North China, Ministry of Agriculture and Rural Affairs, China
| | - Weimin Sun
- Guangdong Institute of Eco-environmental and Soil Science, Guangzhou, China
| | - Meng Wang
- Changjiang Water Resources Protection Institute, Wuhan, China
| | - Hao Fan
- Changjiang Water Resources Protection Institute, Wuhan, China
| | - Robert A Sanford
- Department of Earth Science & Environmental Change, University of Illinois Urbana-Champaign, Champaign, USA
| | - Na Wei
- Department of Civil and Environmental Engineering, University of Illinois Urbana-Champaign, Champaign, USA
| | - Shuming Peng
- Institute of Ecological Environment, Chengdu University of Technology, China
| | - Daihong Xie
- ANSTEEL Pangang Group Company Limited, Panzhihua, China
| | | | - Shulin Chen
- ANSTEEL Pangang Group Company Limited, Panzhihua, China
| | - Yong Liu
- ANSTEEL Pangang Group Company Limited, Panzhihua, China
| | - Zhou Jiang
- School of Environmental Studies, China University of Geosciences, Wuhan, China
| | - Yongguang Jiang
- School of Environmental Studies, China University of Geosciences, Wuhan, China
| | - Yidan Hu
- School of Environmental Studies, China University of Geosciences, Wuhan, China
| | - Shuyi Li
- School of Environmental Studies, China University of Geosciences, Wuhan, China
| | - Na Hu
- School of Environmental Studies, China University of Geosciences, Wuhan, China
| | - Yiran Dong
- School of Environmental Studies, China University of Geosciences, Wuhan, China; State Key Laboratory of Biogeology and Environmental Geology, Wuhan, China; State Environmental Protection Key Laboratory of Source Apportionment and Control of Aquatic Pollution, Ministry of Ecology and Environment, Wuhan, China; Hubei Key Laboratory of Yangtze Catchment Environmental Aquatic Science, Wuhan, China; Hubei Key Laboratory of Wetland Evolution & Ecological Restoration, Wuhan, China.
| | - Liang Shi
- School of Environmental Studies, China University of Geosciences, Wuhan, China; State Key Laboratory of Biogeology and Environmental Geology, Wuhan, China; State Environmental Protection Key Laboratory of Source Apportionment and Control of Aquatic Pollution, Ministry of Ecology and Environment, Wuhan, China
| |
Collapse
|
3
|
Song Y, Tüysüz H. CO 2 Fixation to Prebiotic Intermediates over Heterogeneous Catalysts. Acc Chem Res 2024; 57:2038-2047. [PMID: 39024180 PMCID: PMC11308370 DOI: 10.1021/acs.accounts.4c00151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Revised: 05/24/2024] [Accepted: 07/03/2024] [Indexed: 07/20/2024]
Abstract
ConspectusThe study of the origin of life requires a multifaceted approach to understanding where and how life arose on Earth. One of the most compelling hypotheses is the chemosynthetic origin of life at hydrothermal vents, as this condition has been considered viable for early forms of life. The continuous production of H2 and heat by serpentinization generates reductive conditions at hydrothermal vents, in which CO2 can be used to build large biomolecules. Although this involves surface catalysis and an autocatalytic process, in which solid minerals act as catalysts in the conversion of CO2 to metabolically important organic molecules, the systematic investigation of heterogeneous catalysis to comprehend prebiotic chemistry at hydrothermal vents has not been undertaken.In this Account, we discuss geochemical CO2 fixation to metabolic intermediates by synthetic minerals at hydrothermal vents from the perspective of heterogeneous catalysis. Ni and Fe are the most abundant transition metals at hydrothermal vents and occur in the active site of the enzymes carbon monoxide dehydrogenases/acetyl coenzyme A synthases (CODH/ACS). Synthetic free-standing NiFe alloy nanoparticles can convert CO2 to acetyl coenzyme A pathway intermediates such as formate, acetate, and pyruvate. The same alloy can further convert pyruvate to citramalate, which is essential in the biological citramalate pathway. Thermal treatment of Ni3Fe nanoparticles under NH3, which can occur in hydrothermal vents, results in Ni3FeN/Ni3Fe heterostructures. This catalyst has been demonstrated to produce prebiotic formamide and acetamide from CO2 and H2O using Ni3FeN/Ni3Fe as both substrate and catalyst. In the process of serpentinization, Co can be reduced in the vicinity of olivine, a Mg-Fe silicate mineral. This produces CoFe and CoFe2 with serpentine in nature, representing SiO2-supported CoFe alloys. In mimicking these natural minerals, synthetic SiO2-supported CoFe alloys demonstrate the same liquid products as NiFe alloys, namely, formate, acetate, and pyruvate under mild hydrothermal vent conditions. In contrast to the NiFe system, hydrocarbons up to C6 were detected in the gas phase, which is also present in hydrothermal vents. The addition of alkali and alkaline-earth metals to the catalysts results in enhanced formate concentration, playing a promotional role in CO2 reduction. Finally, Co was loaded onto ordered mesoporous SiO2 after modification with cations to simulate the minerals found in hydrothermal vents. These catalysts were then investigated under diminished H2O concentration, revealing the conversion of CO2 to CO, CH4, methanol, and acetate. Notably, the selectivity to metabolically relevant methanol was enhanced in the presence of cations that could generate and stabilize the methoxy intermediate. Calculation using the machine learning approach revealed the possibility of predicting the selectivity of CO2 fixation when modifying mesoporous SiO2 supports with heterocations. Our research demonstrates that minerals at hydrothermal vents can convert CO2 into metabolites under a variety of prebiotic conditions, potentially paving the way for modern biological CO2 fixation processes.
Collapse
Affiliation(s)
- Youngdong Song
- Department of Heterogeneous
Catalysis, Max-Planck-Institut für
Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Harun Tüysüz
- Department of Heterogeneous
Catalysis, Max-Planck-Institut für
Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| |
Collapse
|
4
|
Vance SD, Craft KL, Shock E, Schmidt BE, Lunine J, Hand KP, McKinnon WB, Spiers EM, Chivers C, Lawrence JD, Wolfenbarger N, Leonard EJ, Robinson KJ, Styczinski MJ, Persaud DM, Steinbrügge G, Zolotov MY, Quick LC, Scully JEC, Becker TM, Howell SM, Clark RN, Dombard AJ, Glein CR, Mousis O, Sephton MA, Castillo-Rogez J, Nimmo F, McEwen AS, Gudipati MS, Jun I, Jia X, Postberg F, Soderlund KM, Elder CM. Investigating Europa's Habitability with the Europa Clipper. SPACE SCIENCE REVIEWS 2023; 219:81. [PMID: 38046182 PMCID: PMC10687213 DOI: 10.1007/s11214-023-01025-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/22/2022] [Accepted: 11/03/2023] [Indexed: 12/05/2023]
Abstract
The habitability of Europa is a property within a system, which is driven by a multitude of physical and chemical processes and is defined by many interdependent parameters, so that its full characterization requires collaborative investigation. To explore Europa as an integrated system to yield a complete picture of its habitability, the Europa Clipper mission has three primary science objectives: (1) characterize the ice shell and ocean including their heterogeneity, properties, and the nature of surface-ice-ocean exchange; (2) characterize Europa's composition including any non-ice materials on the surface and in the atmosphere, and any carbon-containing compounds; and (3) characterize Europa's geology including surface features and localities of high science interest. The mission will also address several cross-cutting science topics including the search for any current or recent activity in the form of thermal anomalies and plumes, performing geodetic and radiation measurements, and assessing high-resolution, co-located observations at select sites to provide reconnaissance for a potential future landed mission. Synthesizing the mission's science measurements, as well as incorporating remote observations by Earth-based observatories, the James Webb Space Telescope, and other space-based resources, to constrain Europa's habitability, is a complex task and is guided by the mission's Habitability Assessment Board (HAB).
Collapse
Affiliation(s)
- Steven D. Vance
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - Kathleen L. Craft
- Applied Physics Laboratory, Johns Hopkins University, Laurel, MD USA
| | - Everett Shock
- School of Earth & Space Exploration and School of Molecular Sciences, Arizona State University, Tempe, AZ USA
| | - Britney E. Schmidt
- Department of Astronomy and Department of Earth & Atmospheric Sciences, Cornell University, Ithaca, NY USA
| | - Jonathan Lunine
- Department of Astronomy and Department of Earth & Atmospheric Sciences, Cornell University, Ithaca, NY USA
| | - Kevin P. Hand
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - William B. McKinnon
- Department of Earth and Planetary Sciences and McDonnell Center for the Space Sciences, Washington University in St. Louis, Saint Louis, MO USA
| | - Elizabeth M. Spiers
- School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA USA
| | - Chase Chivers
- School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA USA
- Applied Ocean Physics and Engineering, Woods Hole Oceanographic Institution, Woods Hole, MA USA
| | - Justin D. Lawrence
- School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA USA
- Honeybee Robotics, Altadena, CA USA
| | - Natalie Wolfenbarger
- Institute for Geophysics, John A. and Katherine G. Jackson School of Geosciences, University of Texas at Austin, Austin, TX USA
| | - Erin J. Leonard
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | | | | | - Divya M. Persaud
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - Gregor Steinbrügge
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - Mikhail Y. Zolotov
- School of Earth & Space Exploration and School of Molecular Sciences, Arizona State University, Tempe, AZ USA
| | | | | | | | - Samuel M. Howell
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | | | - Andrew J. Dombard
- Dept. of Earth and Environmental Sciences, University of Illinois Chicago, Chicago, USA
| | | | - Olivier Mousis
- Aix Marseille Université, CNRS, LAM (Laboratoire d’Astrophysique de Marseille), Marseille, France
| | - Mark A. Sephton
- Impacts and Astromaterials Research Centre, Department of Earth Science and Engineering, Imperial College London, London, United Kingdom
| | | | - Francis Nimmo
- Department of Earth and Planetary Sciences, University of California, Santa Cruz, CA USA
| | - Alfred S. McEwen
- Lunar and Planetary Laboratory, University of Arizona, Tucson, AZ USA
| | - Murthy S. Gudipati
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - Insoo Jun
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| | - Xianzhe Jia
- Department of Climate and Space Sciences and Engineering, University of Michigan, Ann Arbor, MI USA
| | - Frank Postberg
- Institut für Geologische Wissenschaften, Freie Universität Berlin, Berlin, Germany
| | - Krista M. Soderlund
- Institute for Geophysics, John A. and Katherine G. Jackson School of Geosciences, University of Texas at Austin, Austin, TX USA
| | - Catherine M. Elder
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA USA
| |
Collapse
|
5
|
Tozzi A, Mazzeo M. The First Nucleic Acid Strands May Have Grown on Peptides via Primeval Reverse Translation. Acta Biotheor 2023; 71:23. [PMID: 37947915 DOI: 10.1007/s10441-023-09474-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Accepted: 10/25/2023] [Indexed: 11/12/2023]
Abstract
The central dogma of molecular biology dictates that, with only a few exceptions, information proceeds from DNA to protein through an RNA intermediate. Examining the enigmatic steps from prebiotic to biological chemistry, we take another road suggesting that primordial peptides acted as template for the self-assembly of the first nucleic acids polymers. Arguing in favour of a sort of archaic "reverse translation" from proteins to RNA, our basic premise is a Hadean Earth where key biomolecules such as amino acids, polypeptides, purines, pyrimidines, nucleosides and nucleotides were available under different prebiotically plausible conditions, including meteorites delivery, shallow ponds and hydrothermal vents scenarios. Supporting a protein-first scenario alternative to the RNA world hypothesis, we propose the primeval occurrence of short two-dimensional peptides termed "selective amino acid- and nucleotide-matching oligopeptides" (henceforward SANMAOs) that noncovalently bind at the same time the polymerized amino acids and the single nucleotides dispersed in the prebiotic milieu. In this theoretical paper, we describe the chemical features of this hypothetical oligopeptide, its biological plausibility and its virtues from an evolutionary perspective. We provide a theoretical example of SANMAO's selective pairing between amino acids and nucleosides, simulating a poly-Glycine peptide that acts as a template to build a purinic chain corresponding to the glycine's extant triplet codon GGG. Further, we discuss how SANMAO might have endorsed the formation of low-fidelity RNA's polymerized strains, well before the appearance of the accurate genetic material's transmission ensured by the current translation apparatus.
Collapse
Affiliation(s)
- Arturo Tozzi
- Center for Nonlinear Science, Department of Physics, University of North Texas, 1155 Union Circle, #311427, Denton, TX, 76203-5017, USA.
| | - Marco Mazzeo
- Erredibi Srl, Via Pazzigno 117, 80146, Naples, Italy
| |
Collapse
|
6
|
Mrnjavac N, Wimmer JLE, Brabender M, Schwander L, Martin WF. The Moon-Forming Impact and the Autotrophic Origin of Life. Chempluschem 2023; 88:e202300270. [PMID: 37812146 PMCID: PMC7615287 DOI: 10.1002/cplu.202300270] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 09/29/2023] [Accepted: 10/03/2023] [Indexed: 10/10/2023]
Abstract
The Moon-forming impact vaporized part of Earth's mantle, and turned the rest into a magma ocean, from which carbon dioxide degassed into the atmosphere, where it stayed until water rained out to form the oceans. The rain dissolved CO2 and made it available to react with transition metal catalysts in the Earth's crust so as to ultimately generate the organic compounds that form the backbone of microbial metabolism. The Moon-forming impact was key in building a planet with the capacity to generate life in that it converted carbon on Earth into a homogeneous and accessible substrate for organic synthesis. Today all ecosystems, without exception, depend upon primary producers, organisms that fix CO2 . According to theories of autotrophic origin, it has always been that way, because autotrophic theories posit that the first forms of life generated all the molecules needed to build a cell from CO2 , forging a direct line of continuity between Earth's initial CO2 -rich atmosphere and the first microorganisms. By modern accounts these were chemolithoautotrophic archaea and bacteria that initially colonized the crust and still inhabit that environment today.
Collapse
Affiliation(s)
- Natalia Mrnjavac
- Department of Biology Institute for Molecular Evolution Heinrich Heine University Duesseldorf Universitaetsstr. 1, 40225 Düsseldorf (Germany)
| | - Jessica L. E. Wimmer
- Department of Biology Institute for Molecular Evolution Heinrich Heine University Duesseldorf Universitaetsstr. 1, 40225 Düsseldorf (Germany)
| | - Max Brabender
- Department of Biology Institute for Molecular Evolution Heinrich Heine University Duesseldorf Universitaetsstr. 1, 40225 Düsseldorf (Germany)
| | - Loraine Schwander
- Department of Biology Institute for Molecular Evolution Heinrich Heine University Duesseldorf Universitaetsstr. 1, 40225 Düsseldorf (Germany)
| | - William F. Martin
- Department of Biology Institute for Molecular Evolution Heinrich Heine University Duesseldorf Universitaetsstr. 1, 40225 Düsseldorf (Germany)
| |
Collapse
|
7
|
He Y, Pan J, Huang D, Sanford RA, Peng S, Wei N, Sun W, Shi L, Jiang Z, Jiang Y, Hu Y, Li S, Li Y, Li M, Dong Y. Distinct microbial structure and metabolic potential shaped by significant environmental gradient impacted by ferrous slag weathering. ENVIRONMENT INTERNATIONAL 2023; 178:108067. [PMID: 37393724 DOI: 10.1016/j.envint.2023.108067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Revised: 06/23/2023] [Accepted: 06/25/2023] [Indexed: 07/04/2023]
Abstract
Alkaline ferrous slags pose global environmental issues and long-term risks to ambient environments. To explore the under-investigated microbial structure and biogeochemistry in such unique ecosystems, combined geochemical, microbial, ecological and metagenomic analyses were performed in the areas adjacent to a ferrous slag disposal plant in Sichuan, China. Different levels of exposure to ultrabasic slag leachate had resulted in a significant geochemical gradient of pH (8.0-12.4), electric potential (-126.9 to 437.9 mV), total organic carbon (TOC, 1.5-17.3 mg/L), and total nitrogen (TN, 0.17-1.01 mg/L). Distinct microbial communities were observed depending on their exposure to the strongly alkaline leachate. High pH and Ca2+ concentrations were associated with low microbial diversity and enrichment of bacterial classes Gamma-proteobacteria and Deinococci in the microbial communities exposed to the leachate. Combined metagenomic analyses of 4 leachate-unimpacted and 2-impacted microbial communities led to the assembly of one Serpentinomonas pangenome and 81 phylogenetically diversified metagenome assembled genomes (MAGs). The prevailing taxa in the leachate-impacted habitats (e.g., Serpentinomonas and Meiothermus spp.) were phylogenetically related to those in active serpentinizing ecosystems, suggesting the analogous processes between the man-made and natural systems. More importantly, they accounted for significant abundance of most functional genes associated with environmental adaptation and major element cycling. Their metabolic potential (e.g., cation/H+ antiporters, carbon fixation on lithospheric carbon source, and respiration coupling sulfur oxidization and oxygen or nitrate reduction) may support these taxa to survive and prosper in these unique geochemical niches. This study provides fundamental understandings of the adaptive strategies of microorganisms in response to the strong environmental perturbation by alkali tailings. It also contributes to a better comprehension of how to remediate environments affected by alkaline industrial material.
Collapse
Affiliation(s)
- Yu He
- School of Environmental Studies, China University of Geosciences, China
| | - Jie Pan
- Archaeal Biology Center, Institute for Advanced Studies, Shenzhen University, China; Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, China
| | - Dongmei Huang
- School of Environmental Studies, China University of Geosciences, China; Yejin Geological Team of Hubei Geological Bureau, China
| | - Robert A Sanford
- Department of Earth Science & Environmental Change, University of Illinois Urbana-Champaign, Champaign, IL, United States
| | - Shuming Peng
- Institute of Ecological Environment, Chengdu University of Technology, China
| | - Na Wei
- Department of Civil and Environmental Engineering, University of Illinois Urbana-Champaign, Champaign, IL, United States
| | - Weimin Sun
- Guangdong Institute of Eco-environmental and Soil Science, Guangdong, China
| | - Liang Shi
- School of Environmental Studies, China University of Geosciences, China; State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, China; State Environmental Protection Key Laboratory of Source Apportionment and Control of Aquatic Pollution, Ministry of Ecology and Environment, China
| | - Zhou Jiang
- School of Environmental Studies, China University of Geosciences, China
| | - Yongguang Jiang
- School of Environmental Studies, China University of Geosciences, China
| | - Yidan Hu
- School of Environmental Studies, China University of Geosciences, China
| | - Shuyi Li
- School of Environmental Studies, China University of Geosciences, China
| | - Yongzhe Li
- School of Environmental Studies, China University of Geosciences, China
| | - Meng Li
- Archaeal Biology Center, Institute for Advanced Studies, Shenzhen University, China; Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, China.
| | - Yiran Dong
- School of Environmental Studies, China University of Geosciences, China; State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, China; State Environmental Protection Key Laboratory of Source Apportionment and Control of Aquatic Pollution, Ministry of Ecology and Environment, China; Hubei Key Laboratory of Yangtze Catchment Environmental Aquatic Science, China; Hubei Key Laboratory of Wetland Evolution and Ecology Restoration, China.
| |
Collapse
|
8
|
Beyazay T, Belthle KS, Farès C, Preiner M, Moran J, Martin WF, Tüysüz H. Ambient temperature CO 2 fixation to pyruvate and subsequently to citramalate over iron and nickel nanoparticles. Nat Commun 2023; 14:570. [PMID: 36732515 PMCID: PMC9894855 DOI: 10.1038/s41467-023-36088-w] [Citation(s) in RCA: 25] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Accepted: 01/16/2023] [Indexed: 02/04/2023] Open
Abstract
The chemical reactions that formed the building blocks of life at origins required catalysts, whereby the nature of those catalysts influenced the type of products that accumulated. Recent investigations have shown that at 100 °C awaruite, a Ni3Fe alloy that naturally occurs in serpentinizing systems, is an efficient catalyst for CO2 conversion to formate, acetate, and pyruvate. These products are identical with the intermediates and products of the acetyl-CoA pathway, the most ancient CO2 fixation pathway and the backbone of carbon metabolism in H2-dependent autotrophic microbes. Here, we show that Ni3Fe nanoparticles prepared via the hard-templating method catalyze the conversion of H2 and CO2 to formate, acetate and pyruvate at 25 °C under 25 bar. Furthermore, the 13C-labeled pyruvate can be further converted to acetate, parapyruvate, and citramalate over Ni, Fe, and Ni3Fe nanoparticles at room temperature within one hour. These findings strongly suggest that awaruite can catalyze both the formation of citramalate, the C5 product of pyruvate condensation with acetyl-CoA in microbial carbon metabolism, from pyruvate and the formation of pyruvate from CO2 at very moderate reaction conditions without organic catalysts. These results align well with theories for an autotrophic origin of microbial metabolism under hydrothermal vent conditions.
Collapse
Affiliation(s)
- Tuğçe Beyazay
- Max-Planck-Institut für Kohlenforschung, Mülheim an der Ruhr, Germany
| | - Kendra S Belthle
- Max-Planck-Institut für Kohlenforschung, Mülheim an der Ruhr, Germany
| | - Christophe Farès
- Max-Planck-Institut für Kohlenforschung, Mülheim an der Ruhr, Germany
| | - Martina Preiner
- Faculty of Geosciences, Utrecht University, Department of Ocean Systems, Royal Netherlands Institute for Sea Research (NIOZ), Yerseke, The Netherlands
| | - Joseph Moran
- Université de Strasbourg, CNRS, ISIS UMR 7006, Strasbourg, France
| | - William F Martin
- Institute of Molecular Evolution, University of Düsseldorf, Düsseldorf, Germany.
| | - Harun Tüysüz
- Max-Planck-Institut für Kohlenforschung, Mülheim an der Ruhr, Germany.
| |
Collapse
|
9
|
Molecular-scale mechanisms of CO2 mineralization in nanoscale interfacial water films. Nat Rev Chem 2022; 6:598-613. [PMID: 37117714 DOI: 10.1038/s41570-022-00418-1] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/21/2022] [Indexed: 01/02/2023]
Abstract
The calamitous impacts of unabated carbon emission from fossil-fuel-burning energy infrastructure call for accelerated development of large-scale CO2 capture, utilization and storage technologies that are underpinned by a fundamental understanding of the chemical processes at a molecular level. In the subsurface, rocks rich in divalent metals can react with CO2, permanently sequestering it in the form of stable metal carbonate minerals, with the CO2-H2O composition of the post-injection pore fluid acting as a primary control variable. In this Review, we discuss mechanistic reaction pathways for aqueous-mediated carbonation with carbon mineralization occurring in nanoscale adsorbed water films. In the extreme of pores filled with a CO2-dominant fluid, carbonation reactions are confined to angstrom to nanometre-thick water films coating mineral surfaces, which enable metal cation release, transport, nucleation and crystallization of metal carbonate minerals. Although seemingly counterintuitive, laboratory studies have demonstrated facile carbonation rates in these low-water environments, for which a better mechanistic understanding has come to light in recent years. The overarching objective of this Review is to delineate the unique underlying molecular-scale reaction mechanisms that govern CO2 mineralization in these reactive and dynamic quasi-2D interfaces. We highlight the importance of understanding unique properties in thin water films, such as how water dielectric properties, and consequently ion solvation and hydration behaviour, can change under nanoconfinement. We conclude by identifying important frontiers for future work and opportunities to exploit these fundamental chemical insights for decarbonization technologies in the twenty-first century.
Collapse
|
10
|
Henriques Pereira DP, Leethaus J, Beyazay T, do Nascimento Vieira A, Kleinermanns K, Tüysüz H, Martin WF, Preiner M. Role of geochemical protoenzymes (geozymes) in primordial metabolism: specific abiotic hydride transfer by metals to the biological redox cofactor NAD . FEBS J 2022; 289:3148-3162. [PMID: 34923745 PMCID: PMC9306933 DOI: 10.1111/febs.16329] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 12/09/2021] [Accepted: 12/17/2021] [Indexed: 12/17/2022]
Abstract
Hydrogen gas, H2 , is generated in serpentinizing hydrothermal systems, where it has supplied electrons and energy for microbial communities since there was liquid water on Earth. In modern metabolism, H2 is converted by hydrogenases into organically bound hydrides (H- ), for example, the cofactor NADH. It transfers hydrides among molecules, serving as an activated and biologically harnessed form of H2 . In serpentinizing systems, minerals can also bind hydrides and could, in principle, have acted as inorganic hydride donors-possibly as a geochemical protoenzyme, a 'geozyme'- at the origin of metabolism. To test this idea, we investigated the ability of H2 to reduce NAD+ in the presence of iron (Fe), cobalt (Co) and nickel (Ni), metals that occur in serpentinizing systems. In the presence of H2 , all three metals specifically reduce NAD+ to the biologically relevant form, 1,4-NADH, with up to 100% conversion rates within a few hours under alkaline aqueous conditions at 40 °C. Using Henry's law, the partial pressure of H2 in our reactions corresponds to 3.6 mm, a concentration observed in many modern serpentinizing systems. While the reduction of NAD+ by Ni is strictly H2 -dependent, experiments in heavy water (2 H2 O) indicate that native Fe can reduce NAD+ both with and without H2 . The results establish a mechanistic connection between abiotic and biotic hydride donors, indicating that geochemically catalysed, H2 -dependent NAD+ reduction could have preceded the hydrogenase-dependent reaction in evolution.
Collapse
Affiliation(s)
| | - Jana Leethaus
- Institute for Molecular EvolutionHeinrich Heine UniversityDüsseldorfGermany
| | - Tugce Beyazay
- Max‐Planck‐Institut für KohlenforschungMülheim an der RuhrGermany
| | | | - Karl Kleinermanns
- Institute for Physical ChemistryHeinrich Heine UniversityDüsseldorfGermany
| | - Harun Tüysüz
- Max‐Planck‐Institut für KohlenforschungMülheim an der RuhrGermany
| | - William F. Martin
- Institute for Molecular EvolutionHeinrich Heine UniversityDüsseldorfGermany
| | - Martina Preiner
- Department of Ocean SystemsRoyal Netherlands Institute for Sea ResearchDen BurgThe Netherlands
- Department of Earth SciencesUtrecht UniversityThe Netherlands
| |
Collapse
|
11
|
de Mendonça Filho FF, Romero Rodriguez C, Schlangen E, Çopuroğlu O. Plutonic Rocks as Protection Layers to Concrete Exposed to Ultra-High Temperature. MATERIALS 2022; 15:ma15103490. [PMID: 35629520 PMCID: PMC9147395 DOI: 10.3390/ma15103490] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Revised: 05/09/2022] [Accepted: 05/10/2022] [Indexed: 02/04/2023]
Abstract
Concrete structures perform poorly when withstanding thermal shock events, usually requiring repair or replacement after one single instance. In certain industries (such as petrol, metallurgic and ceramics), these events are not only likely but frequent, which represents a considerable financial burden. One option to solve this issue would be to decrease the heating rate imposed onto the concrete material through the use of a protective surface layer. In this work, the suitability of dunite and microgabbro as protective materials is explored through X-ray diffraction, thermal dilation, optical microscopy, X-ray microtomography, thermo-gravimetric analysis and a compressive test. Further, the thermal dilation was used as an input to simulate a composite concrete-rock wall and the respective stresses caused by a thermal shock event. The dehydration of chrysotile in dunite and the decomposition of analcime, chamosite and pumpellyite in microgabbro were both favourable for the performance of the stones in the desired application. The thermal stability and deformation were found in the range of what can be applied directly on concrete; however, it was clear that pre-heating treatment results in a far more durable system in a cyclic thermal load situation.
Collapse
|
12
|
A Thermodynamic Model for Water Activity and Redox Potential in Evolution and Development. J Mol Evol 2022; 90:182-199. [DOI: 10.1007/s00239-022-10051-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Accepted: 02/22/2022] [Indexed: 10/18/2022]
|
13
|
Wimmer JLE, Xavier JC, Vieira ADN, Pereira DPH, Leidner J, Sousa FL, Kleinermanns K, Preiner M, Martin WF. Energy at Origins: Favorable Thermodynamics of Biosynthetic Reactions in the Last Universal Common Ancestor (LUCA). Front Microbiol 2021; 12:793664. [PMID: 34966373 PMCID: PMC8710812 DOI: 10.3389/fmicb.2021.793664] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Accepted: 11/24/2021] [Indexed: 12/02/2022] Open
Abstract
Though all theories for the origin of life require a source of energy to promote primordial chemical reactions, the nature of energy that drove the emergence of metabolism at origins is still debated. We reasoned that evidence for the nature of energy at origins should be preserved in the biochemical reactions of life itself, whereby changes in free energy, ΔG, which determine whether a reaction can go forward or not, should help specify the source. By calculating values of ΔG across the conserved and universal core of 402 individual reactions that synthesize amino acids, nucleotides and cofactors from H2, CO2, NH3, H2S and phosphate in modern cells, we find that 95-97% of these reactions are exergonic (ΔG ≤ 0 kJ⋅mol-1) at pH 7-10 and 80-100°C under nonequilibrium conditions with H2 replacing biochemical reductants. While 23% of the core's reactions involve ATP hydrolysis, 77% are ATP-independent, thermodynamically driven by ΔG of reactions involving carbon bonds. We identified 174 reactions that are exergonic by -20 to -300 kJ⋅mol-1 at pH 9 and 80°C and that fall into ten reaction types: six pterin dependent alkyl or acyl transfers, ten S-adenosylmethionine dependent alkyl transfers, four acyl phosphate hydrolyses, 14 thioester hydrolyses, 30 decarboxylations, 35 ring closure reactions, 31 aromatic ring formations, and 44 carbon reductions by reduced nicotinamide, flavins, ferredoxin, or formate. The 402 reactions of the biosynthetic core trace to the last universal common ancestor (LUCA), and reveal that synthesis of LUCA's chemical constituents required no external energy inputs such as electric discharge, UV-light or phosphide minerals. The biosynthetic reactions of LUCA uncover a natural thermodynamic tendency of metabolism to unfold from energy released by reactions of H2, CO2, NH3, H2S, and phosphate.
Collapse
Affiliation(s)
- Jessica L. E. Wimmer
- Department of Biology, Institute of Molecular Evolution, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
| | - Joana C. Xavier
- Department of Biology, Institute of Molecular Evolution, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
| | - Andrey d. N. Vieira
- Department of Biology, Institute of Molecular Evolution, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
| | - Delfina P. H. Pereira
- Department of Biology, Institute of Molecular Evolution, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
| | - Jacqueline Leidner
- Department of Biology, Institute of Molecular Evolution, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
| | - Filipa L. Sousa
- Department of Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria
| | - Karl Kleinermanns
- Department of Chemistry, Institute of Physical Chemistry, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
| | - Martina Preiner
- Department of Biology, Institute of Molecular Evolution, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
| | - William F. Martin
- Department of Biology, Institute of Molecular Evolution, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
| |
Collapse
|
14
|
The Autotrophic Core: An Ancient Network of 404 Reactions Converts H 2, CO 2, and NH 3 into Amino Acids, Bases, and Cofactors. Microorganisms 2021; 9:microorganisms9020458. [PMID: 33672143 PMCID: PMC7926472 DOI: 10.3390/microorganisms9020458] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Revised: 02/11/2021] [Accepted: 02/19/2021] [Indexed: 01/03/2023] Open
Abstract
The metabolism of cells contains evidence reflecting the process by which they arose. Here, we have identified the ancient core of autotrophic metabolism encompassing 404 reactions that comprise the reaction network from H2, CO2, and ammonia (NH3) to amino acids, nucleic acid monomers, and the 19 cofactors required for their synthesis. Water is the most common reactant in the autotrophic core, indicating that the core arose in an aqueous environment. Seventy-seven core reactions involve the hydrolysis of high-energy phosphate bonds, furthermore suggesting the presence of a non-enzymatic and highly exergonic chemical reaction capable of continuously synthesizing activated phosphate bonds. CO2 is the most common carbon-containing compound in the core. An abundance of NADH and NADPH-dependent redox reactions in the autotrophic core, the central role of CO2, and the circumstance that the core’s main products are far more reduced than CO2 indicate that the core arose in a highly reducing environment. The chemical reactions of the autotrophic core suggest that it arose from H2, inorganic carbon, and NH3 in an aqueous environment marked by highly reducing and continuously far from equilibrium conditions. Such conditions are very similar to those found in serpentinizing hydrothermal systems.
Collapse
|
15
|
Kierczak J, Pietranik A, Pędziwiatr A. Ultramafic geoecosystems as a natural source of Ni, Cr, and Co to the environment: A review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 755:142620. [PMID: 33097274 DOI: 10.1016/j.scitotenv.2020.142620] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2020] [Revised: 09/21/2020] [Accepted: 09/21/2020] [Indexed: 06/11/2023]
Abstract
Ultramafic soils are in equal parts fascinating and dangerous. Developed on rocks derived predominately from the Earth's mantle and metamorphosed at the ocean floors, ultramafic soils form in the places where tectonic forces brought these rocks from mantle depths to the surface. As it is common in nature, both ultramafic rocks and soils are site-specific, and vary in character and composition; however, they have one thing in common, they are enriched in certain elements and three metals in particular form an "ultramafic" triad: Ni, Cr, and Co. These three metals are far from being human-friendly and strict legislative limits are established for maximum allowable concentrations of these metals in soils, but mostly in the case when the metals are of anthropogenic origin. However, ultramafic soils are a natural phenomenon where increased metal content is not the result of pollution, but rather referred as a peculiar geochemical background, therefore there is no reason for their remediation. At the same time, it is not that easy to actually find an ultramafic soil that does not overstep the limits (for the sake of this paper we use median world Regulatory Guidance Values - RGVs). Often, mobile Ni and Co concentrations are above the guidelines when doing tests to estimate the bioavailable fraction (EDTA and DTPA), and high concentrations of Ni are also commonly present in excluder plants (also edible ones). Also waters in ultramafic areas often exceed Ni and Cr(VI) limits. It is therefore expected that the ultramafic metals are present in the food chain and they might constitute a potential health risk. Thus, there is a need for additional research focused on assessment of the potential health consequences of chronic high exposure on naturally occurring Ni, Cr, and Co.
Collapse
Affiliation(s)
- Jakub Kierczak
- University of Wrocław, Institute of Geological Sciences, Pl. M. Borna 9, 50-204 Wrocław, Poland.
| | - Anna Pietranik
- University of Wrocław, Institute of Geological Sciences, Pl. M. Borna 9, 50-204 Wrocław, Poland
| | - Artur Pędziwiatr
- Warsaw University of Life Sciences WULS-SGGW, Institute of Agriculture, ul. Nowoursynowska 159/37, 02-787 Warszawa, Poland
| |
Collapse
|
16
|
Bility MT, Agarwal Y, Ho S, Castronova I, Beatty C, Biradar S, Narala V, Periyapatna N, Chen Y, Nachega J. WITHDRAWN: Can Traditional Chinese Medicine provide insights into controlling the COVID-19 pandemic: Serpentinization-induced lithospheric long-wavelength magnetic anomalies in Proterozoic bedrocks in a weakened geomagnetic field mediate the aberrant transformation of biogenic molecules in COVID-19 via magnetic catalysis. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020:142830. [PMID: 33071142 PMCID: PMC7543923 DOI: 10.1016/j.scitotenv.2020.142830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Revised: 09/26/2020] [Accepted: 09/27/2020] [Indexed: 06/11/2023]
Abstract
This article has been withdrawn at the request of the authors and the editors. The Publisher apologizes for any inconvenience this may cause. The full Elsevier Policy on Article Withdrawal can be found at https://www.elsevier.com/about/our-business/policies/article-withdrawal.
Collapse
Affiliation(s)
- Moses Turkle Bility
- Department of Infectious Diseases and Microbiology, Graduate School of Public Health, University of Pittsburgh, Public Health, 130 DeSoto Street, Pittsburgh, PA 15261, United States of America.
| | - Yash Agarwal
- Department of Infectious Diseases and Microbiology, Graduate School of Public Health, University of Pittsburgh, Public Health, 130 DeSoto Street, Pittsburgh, PA 15261, United States of America
| | - Sara Ho
- Department of Infectious Diseases and Microbiology, Graduate School of Public Health, University of Pittsburgh, Public Health, 130 DeSoto Street, Pittsburgh, PA 15261, United States of America
| | - Isabella Castronova
- Department of Infectious Diseases and Microbiology, Graduate School of Public Health, University of Pittsburgh, Public Health, 130 DeSoto Street, Pittsburgh, PA 15261, United States of America
| | - Cole Beatty
- Department of Infectious Diseases and Microbiology, Graduate School of Public Health, University of Pittsburgh, Public Health, 130 DeSoto Street, Pittsburgh, PA 15261, United States of America
| | - Shivkumar Biradar
- Department of Infectious Diseases and Microbiology, Graduate School of Public Health, University of Pittsburgh, Public Health, 130 DeSoto Street, Pittsburgh, PA 15261, United States of America
| | - Vanshika Narala
- Department of Infectious Diseases and Microbiology, Graduate School of Public Health, University of Pittsburgh, Public Health, 130 DeSoto Street, Pittsburgh, PA 15261, United States of America
| | - Nivitha Periyapatna
- Department of Infectious Diseases and Microbiology, Graduate School of Public Health, University of Pittsburgh, Public Health, 130 DeSoto Street, Pittsburgh, PA 15261, United States of America
| | - Yue Chen
- Department of Infectious Diseases and Microbiology, Graduate School of Public Health, University of Pittsburgh, Public Health, 130 DeSoto Street, Pittsburgh, PA 15261, United States of America
| | - Jean Nachega
- Department of Infectious Diseases and Microbiology, Graduate School of Public Health, University of Pittsburgh, Public Health, 130 DeSoto Street, Pittsburgh, PA 15261, United States of America; Department of Epidemiology, Graduate School of Public Health, University of Pittsburgh, Public Health, 130 DeSoto Street, Pittsburgh, PA 15261, United States of America
| |
Collapse
|
17
|
do Nascimento Vieira A, Kleinermanns K, Martin WF, Preiner M. The ambivalent role of water at the origins of life. FEBS Lett 2020; 594:2717-2733. [PMID: 32416624 DOI: 10.1002/1873-3468.13815] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2020] [Revised: 04/29/2020] [Accepted: 05/07/2020] [Indexed: 12/15/2022]
Abstract
Life as we know it would not exist without water. However, water molecules not only serve as a solvent and reactant but can also promote hydrolysis, which counteracts the formation of essential organic molecules. This conundrum constitutes one of the central issues in origin of life. Hydrolysis is an important part of energy metabolism for all living organisms but only because, inside cells, it is a controlled reaction. How could hydrolysis have been regulated under prebiotic settings? Lower water activities possibly provide an answer: geochemical sites with less free and more bound water can supply the necessary conditions for protometabolic reactions. Such conditions occur in serpentinising systems, hydrothermal sites that synthesise hydrogen gas via rock-water interactions. Here, we summarise the parallels between biotic and abiotic means of controlling hydrolysis in order to narrow the gap between biochemical and geochemical reactions and briefly outline how hydrolysis could even have played a constructive role at the origin of molecular self-organisation.
Collapse
Affiliation(s)
| | | | - William F Martin
- Institute for Molecular Evolution, University of Düsseldorf, Germany
| | - Martina Preiner
- Institute for Molecular Evolution, University of Düsseldorf, Germany
| |
Collapse
|
18
|
McCollom TM, Klein F, Solheid P, Moskowitz B. The effect of pH on rates of reaction and hydrogen generation during serpentinization. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2020; 378:20180428. [PMID: 31902334 PMCID: PMC7015308 DOI: 10.1098/rsta.2018.0428] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Accepted: 10/30/2019] [Indexed: 06/10/2023]
Abstract
A series of three laboratory experiments were conducted to investigate how pH affects reaction pathways and rates during serpentinization. Two experiments were conducted under strongly alkaline conditions using olivine as reactant at 200 and 230°C, and the results were compared with previous studies performed using the same reactants and methods at more neutral pH. For both experiments, higher pH resulted in more rapid serpentinization of the olivine and generation of larger amounts of H2 for comparable reaction times. Proportionally greater amounts of Fe were partitioned into brucite and chrysotile and less into magnetite in the experiments conducted at higher pH. In a third experiment, alkaline fluids were injected into an ongoing experiment containing olivine and orthopyroxene to raise the pH from circumneutral to strongly alkaline conditions. Increasing the pH of the olivine-orthopyroxene experiment resulted in an immediate and steep increase in H2 production, and led to far more extensive reaction of the primary minerals compared to a similar experiment conducted under more neutral conditions. The results suggest that the development of strongly alkaline conditions in actively serpentinizing systems promotes increased rates of reaction and H2 production, enhancing the flux of H2 available to support biological activity in these environments. This article is part of a discussion meeting issue 'Serpentinite in the Earth System'.
Collapse
Affiliation(s)
- Thomas M. McCollom
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, CO 80309, USA
| | - Frieder Klein
- Marine Chemistry and Geochemistry Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA
| | - Peter Solheid
- Department of Earth Sciences, University of Minnesota, Minneapolis, MN 55455, USA
- Institute for Rock Magnetism, University of Minnesota, Minneapolis, MN 55455, USA
| | - Bruce Moskowitz
- Department of Earth Sciences, University of Minnesota, Minneapolis, MN 55455, USA
- Institute for Rock Magnetism, University of Minnesota, Minneapolis, MN 55455, USA
| |
Collapse
|
19
|
Influence of pH on Molecular Hydrogen (H2) Generation and Reaction Rates during Serpentinization of Peridotite and Olivine. MINERALS 2019. [DOI: 10.3390/min9110661] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Serpentinization produces molecular hydrogen (H2) that is capable of supporting communities of microorganisms in hydrothermal fields, which suggests that serpentinization may be closely related to the origin of life at the early history of the Earth and possibly other planets. In this study, serpentinization experiments were performed at 300 °C and 3.0 kbar with natural olivine and peridotite as starting reactants to quantify the influence of acidic and alkaline solutions on the processes of serpentinization. The results reveal that acidic and alkaline solutions greatly influence molecular hydrogen (H2) generation and the rates of serpentinization. Acidic (pH = 2.50) and alkaline solutions (pH = 13.5) increased H2 production and the rates of peridotite serpentinization. Highly acidic solutions (2 M HCl), however, decreased the production of H2 after peridotite serpentinization by around two orders of magnitude. The decrease in H2 production was associated with a sharp decline in the rates of reaction; e.g., when peridotite was reacted with neutral solutions (0.5 M NaCl), 88% of reaction progress was achieved after an experimental duration of 27 days, and the reaction extent decreased by ~50% for experiments with highly acidic solutions (2 M HCl) over the same period. In contrast, for experiments with solely olivine, highly acidic solutions (2 M HCl) promoted the rates of olivine serpentinization and H2 production. The contrasting effect of highly acidic solutions (2 M HCl) on the processes of olivine and peridotite serpentinization may reflect the influence of pyroxene minerals, which could release SiO2 during peridotite serpentinization and, consequently, hydrogen generation and reaction rates may decrease. The experimental results of this study suggest that H2 production and the rates of serpentinization can be greatly influenced by acidic and alkaline solutions and co-existing minerals (e.g., pyroxene).
Collapse
|
20
|
Bartlett SJ, Beckett P. Probing complexity: thermodynamics and computational mechanics approaches to origins studies. Interface Focus 2019; 9:20190058. [PMID: 31641432 DOI: 10.1098/rsfs.2019.0058] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/06/2019] [Indexed: 12/15/2022] Open
Abstract
This paper proposes new avenues for origins research that apply modern concepts from stochastic thermodynamics, information thermodynamics and complexity science. Most approaches to the emergence of life prioritize certain compounds, reaction pathways, environments or phenomena. What they all have in common is the objective of reaching a state that is recognizably alive, usually positing the need for an evolutionary process. As with life itself, this correlates with a growth in the complexity of the system over time. Complexity often takes the form of an intuition or a proxy for a phenomenon that defies complete understanding. However, recent progress in several theoretical fields allows the rigorous computation of complexity. We thus propose that measurement and control of the complexity and information content of origins-relevant systems can provide novel insights that are absent in other approaches. Since we have no guarantee that the earliest forms of life (or alien life) used the same materials and processes as extant life, an appeal to complexity and information processing provides a more objective and agnostic approach to the search for life's beginnings. This paper gives an accessible overview of the three relevant branches of modern thermodynamics. These frameworks are not commonly applied in origins studies, but are ideally suited to the analysis of such non-equilibrium systems. We present proposals for the application of these concepts in both theoretical and experimental origins settings.
Collapse
Affiliation(s)
- Stuart J Bartlett
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, USA.,Earth-Life Science Institute, Tokyo Institute of Technology, Tokyo, Japan
| | - Patrick Beckett
- Department of Chemical Engineering, University of California Davis, Davis, CA, USA.,Department of Civil and Environmental Engineering, University of California Davis, Davis, CA, USA
| |
Collapse
|
21
|
Klein F, Grozeva NG, Seewald JS. Abiotic methane synthesis and serpentinization in olivine-hosted fluid inclusions. Proc Natl Acad Sci U S A 2019; 116:17666-17672. [PMID: 31427518 PMCID: PMC6731755 DOI: 10.1073/pnas.1907871116] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The conditions of methane (CH4) formation in olivine-hosted secondary fluid inclusions and their prevalence in peridotite and gabbroic rocks from a wide range of geological settings were assessed using confocal Raman spectroscopy, optical and scanning electron microscopy, electron microprobe analysis, and thermodynamic modeling. Detailed examination of 160 samples from ultraslow- to fast-spreading midocean ridges, subduction zones, and ophiolites revealed that hydrogen (H2) and CH4 formation linked to serpentinization within olivine-hosted secondary fluid inclusions is a widespread process. Fluid inclusion contents are dominated by serpentine, brucite, and magnetite, as well as CH4(g) and H2(g) in varying proportions, consistent with serpentinization under strongly reducing, closed-system conditions. Thermodynamic constraints indicate that aqueous fluids entering the upper mantle or lower oceanic crust are trapped in olivine as secondary fluid inclusions at temperatures higher than ∼400 °C. When temperatures decrease below ∼340 °C, serpentinization of olivine lining the walls of the fluid inclusions leads to a near-quantitative consumption of trapped liquid H2O. The generation of molecular H2 through precipitation of Fe(III)-rich daughter minerals results in conditions that are conducive to the reduction of inorganic carbon and the formation of CH4 Once formed, CH4(g) and H2(g) can be stored over geological timescales until extracted by dissolution or fracturing of the olivine host. Fluid inclusions represent a widespread and significant source of abiotic CH4 and H2 in submarine and subaerial vent systems on Earth, and possibly elsewhere in the solar system.
Collapse
Affiliation(s)
- Frieder Klein
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA 02543;
| | - Niya G Grozeva
- Massachusetts Institute of Technology-Woods Hole Oceanographic Institution Joint Program in Oceanography, Cambridge, MA 02139
| | - Jeffrey S Seewald
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA 02543
| |
Collapse
|
22
|
Thermodynamic evidence of giant salt deposit formation by serpentinization: an alternative mechanism to solar evaporation. Sci Rep 2019; 9:11720. [PMID: 31406260 PMCID: PMC6690867 DOI: 10.1038/s41598-019-48138-9] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2019] [Accepted: 07/30/2019] [Indexed: 11/26/2022] Open
Abstract
The evaporation of seawater in arid climates is currently the main accepted driving mechanism for the formation of ancient and recent salt deposits in shallow basins. However, the deposition of huge amounts of marine salts, including the formation of tens of metres of highly soluble types (tachyhydrite and bischofite) during the Aptian in the South Atlantic and during the Messinian Salinity Crisis, are inconsistent with the wet and warm palaeoclimate conditions reconstructed for these periods. Recently, a debate has been developed that opposes the classic model of evaporite deposition and argues for the generation of salt by serpentinization. The products of the latter process can be called “dehydratites”. The associated geochemical processes involve the consumption of massive amounts of pure water, leading to the production of concentrated brines. Here, we investigate thermodynamic calculations that account for high salinities and the production of soluble salts and MgCl2-rich brines through sub-seafloor serpentinization processes. Our results indicate that salt and brine formation occurs during serpentinization and that the brine composition and salt assemblages are dependent on the temperature and CO2 partial pressure. Our findings help explain the presence and sustainability of highly soluble salts that appear inconsistent with reconstructed climatic conditions and demonstrate that the presence of highly soluble salts probably has implications for global tectonics and palaeoclimate reconstructions.
Collapse
|
23
|
Wang J, Watanabe N, Okamoto A, Nakamura K, Komai T. Enhanced hydrogen production with carbon storage by olivine alteration in CO2-rich hydrothermal environments. J CO2 UTIL 2019. [DOI: 10.1016/j.jcou.2019.02.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
24
|
Multiple Kinetic Parameterization in a Reactive Transport Model Using the Exchange Monte Carlo Method. MINERALS 2018. [DOI: 10.3390/min8120579] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Water–rock interaction in surface and subsurface environments occurs in complex multicomponent systems and involves several reactions, including element transfer. Such kinetic information is obtained by fitting a forward model into the temporal evolution of solution chemistry or the spatial pattern recorded in the rock samples, although geochemical and petrological data are essentially sparse and noisy. Therefore, the optimization of kinetic parameters sometimes fails to converge toward the global minimum due to being trapped in a local minimum. In this study, we simultaneously present a novel framework to estimate multiple reaction-rate constants and the diffusivity of aqueous species from the mineral distribution pattern in a rock by using the reactive transport model coupled with the exchange Monte Carlo method. Our approach can estimate both the maximum likelihood and error of each parameter. We applied the method to the synthetic data, which were produced using a model for silica metasomatism and hydration in the olivine–quartz–H2O system. We tested the robustness and accuracy of our method over a wide range of noise intensities. This methodology can be widely applied to kinetic analyses of various kinds of water–rock interactions.
Collapse
|
25
|
Abstract
Interpretation of seismic profiles and results of scientific drillings in the Mediterranean subseafloor provided indication of gigantic salt deposits which rarely crop out on land, such as in Sicily. The salt giants were ascribed to the desiccation, driven by the solar energy, of the entire basin. Nevertheless, the evaporite model hardly explains deep-sea salt deposits. This paper considers a different hypothesis suggesting that seawater reached NaCl saturation during serpentinization of ultramafic rocks. Solid salts and brine pockets were buried within the serpentinite bodies being later (e.g., in the Messinian) released, due to serpentinite breakdown, and discharged at seafloor as hydrothermal heavy brines. Therefore, sea-bottom layers of brine at gypsum and halite saturation were formed. The model is applicable to the Mediterranean area since geophysical data revealed relicts of an aged (hence serpentinized) oceanic lithosphere, of Tethyan affinity, both in its western “Atlantic” extension (Gulf of Cádiz) and in eastern basins, and xenoliths from Hyblean diatremes (Sicily) provided evidence of buried serpentinites in the central area. In addition, the buoyant behavior of muddled serpentinite and salts (and hydrocarbons) gave rise to many composite diapirs throughout the Mediterranean area. Thus, the Mediterranean “salt giant” consists of several independent geobodies of serpentinite and salts.
Collapse
|
26
|
Bassez MP. Water near its Supercritical Point and at Alkaline pH for the Production of Ferric Oxides and Silicates in Anoxic Conditions. A New Hypothesis for the Synthesis of Minerals Observed in Banded Iron Formations and for the Related Geobiotropic Chemistry inside Fluid Inclusions. ORIGINS LIFE EVOL B 2018; 48:289-320. [PMID: 30091010 PMCID: PMC6244801 DOI: 10.1007/s11084-018-9560-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2018] [Accepted: 06/24/2018] [Indexed: 11/27/2022]
Abstract
An alternative hypothesis for the origin of the banded iron formations and the synthesis of prebiotic molecules is presented here. I show the importance of considering water near its supercritical point and at alkaline pH. It is based on the chemical equation for the anoxic oxidation of ferrous iron into ferric iron at high-subcritical conditions of water and high pH, that I extract from E-pH diagrams drawn for corrosion purposes (Geophysical Research Abstracts Vol 15, EGU2013-22 Bassez 2013, Orig Life Evol Biosph 45(1):5-13, Bassez 2015, Procedia Earth Planet Sci 17, 492-495, Bassez 2017a, Orig Life Evol Biosph 47:453-480, Bassez 2017b). The sudden change in solubility of silica, SiO2, at the critical point of water is also considered. It is shown that under these temperatures and pressures, ferric oxides and ferric silicates can form in anoxic terrains. No FeII oxidation by UV light, neither by oxygen is needed to explain the minerals of the Banded Iron Formations. The intervention of any kind of microorganisms, either sulfate-reducing, or FeII-oxidizing or O2-producing, is not required. The chemical equation for the anoxic oxidation of ferrous iron is applied to the hydrolyses of fayalite, Fe2SiO4 and ferrosilite, FeSiO3. It is shown that the BIF minerals of the Hamersley Group, Western Australia, and the Transvaal Supergroup, South Africa, are those of fayalite and ferrosilite hydrolyses and carbonations. The dissolution of crustal fayalite and ferrosilite during water-rock interaction needs to occur at T&P just below the critical point of water and in a rising water which is undersaturated in SiO2. Minerals of BIFs which can then be ejected at the surface from venting arcs are ferric oxide hydroxides, hematite, FeIII-greenalite, siderite. The greenalite dehydrated product minnesotaite forms when rising water becomes supersaturated in SiO2, as also riebeckite and stilpnomelane. Long lengths of siderite without ferric oxides neither ferric silicates can occur since the exothermic siderite formation is not so much dependent in T&P. It is also shown that the H2 which is released during hydrolysis/oxidation of fayalite/ferrosilite can lead to components of life, such as macromolecules of amino acids which are synthesized from mixtures of (CO, N2, H2O) in Sabatier-Senderens/Fischer-Tropsch & Haber-Bosch reactions or microwave or gamma-ray excitation reactions. I propose that such geobiotropic synthesis may occur inside fluid inclusions of BIFs, in the silica chert, hematite, FeIII-greenalite or siderite. Therefore, the combination of high-subcritical conditions of water, high solubility of SiO2 at these T&P values, formation of CO also at these T&P, high pH and anoxic water, leads to the formation of ferric minerals and prebiotic molecules in the process of geobiotropy.
Collapse
Affiliation(s)
- Marie-Paule Bassez
- Institut de Technologie, Université de Strasbourg, 67400 Illkirch-Graffenstaden, Strasbourg, France.
| |
Collapse
|