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Guo Q, Shi L, Wang X, Li D, Yin Z, Zhang J, Ding G, Chen L. Structures and Biological Activities of Secondary Metabolites from the Trichoderma genus (Covering 2018-2022). JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023; 71:13612-13632. [PMID: 37684097 DOI: 10.1021/acs.jafc.3c04540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/10/2023]
Abstract
Trichoderma, a genus with more than 400 species, has a long history of use as an industrial bioreactor, biofertilizer, and biocontrol agent. It is considered a significant source of secondary metabolites (SMs) that possess unique structural features and a wide range of bioactivities. In recent years, numerous secondary metabolites of Trichoderma, including terpenoids, polyketides, peptides, alkaloids, and steroids, have been identified. Most of these SMs displayed antimicrobial, cytotoxic, and antifungal effects. This review focuses on the structural diversity, biological activities, and structure-activity relationships (SARs) of the SMs isolated from Trichoderma covered from 2018 to 2022. This study provides insights into the exploration and utilization of bioactive compounds from Trichoderma species in the agriculture or pharmaceutical industry.
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Affiliation(s)
- Qingfeng Guo
- Henan Comprehensive Utilization of Edible and Medicinal Plant Resources Engineering Technology Research Center, Zhengzhou Key Laboratory of Synthetic Biology of Natural Products, Huanghe Science and Technology College, Zhengzhou 450063, People's Republic of China
| | - Lei Shi
- Henan Comprehensive Utilization of Edible and Medicinal Plant Resources Engineering Technology Research Center, Zhengzhou Key Laboratory of Synthetic Biology of Natural Products, Huanghe Science and Technology College, Zhengzhou 450063, People's Republic of China
| | - Xinyang Wang
- Henan Comprehensive Utilization of Edible and Medicinal Plant Resources Engineering Technology Research Center, Zhengzhou Key Laboratory of Synthetic Biology of Natural Products, Huanghe Science and Technology College, Zhengzhou 450063, People's Republic of China
- Henan University, Kaifeng 475004, People's Republic of China
| | - Dandan Li
- Henan Comprehensive Utilization of Edible and Medicinal Plant Resources Engineering Technology Research Center, Zhengzhou Key Laboratory of Synthetic Biology of Natural Products, Huanghe Science and Technology College, Zhengzhou 450063, People's Republic of China
- Henan University, Kaifeng 475004, People's Republic of China
| | - Zhenhua Yin
- Henan Comprehensive Utilization of Edible and Medicinal Plant Resources Engineering Technology Research Center, Zhengzhou Key Laboratory of Synthetic Biology of Natural Products, Huanghe Science and Technology College, Zhengzhou 450063, People's Republic of China
| | - Juanjuan Zhang
- Henan Comprehensive Utilization of Edible and Medicinal Plant Resources Engineering Technology Research Center, Zhengzhou Key Laboratory of Synthetic Biology of Natural Products, Huanghe Science and Technology College, Zhengzhou 450063, People's Republic of China
| | - Gang Ding
- Institute of Medicinal Plant Development, Chinese Academy of Medical Science and Union Medical College, Beijing 100193, People's Republic of China
| | - Lin Chen
- Henan Comprehensive Utilization of Edible and Medicinal Plant Resources Engineering Technology Research Center, Zhengzhou Key Laboratory of Synthetic Biology of Natural Products, Huanghe Science and Technology College, Zhengzhou 450063, People's Republic of China
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Characterization of Peptaibols Produced by a Marine Strain of the Fungus Trichoderma endophyticum via Mass Spectrometry, Genome Mining and Phylogeny-Based Prediction. Metabolites 2023; 13:metabo13020221. [PMID: 36837841 PMCID: PMC9961477 DOI: 10.3390/metabo13020221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Revised: 01/25/2023] [Accepted: 01/27/2023] [Indexed: 02/05/2023] Open
Abstract
Trichoderma is recognized as a prolific producer of nonribosomal peptides (NRPs) known as peptaibols, which have remarkable biological properties, such as antimicrobial and anticancer activities, as well as the ability to promote systemic resistance in plants against pathogens. In this study, the sequencing of 11-, 14- and 15-res peptaibols produced by a marine strain of Trichoderma isolated from the ascidian Botrylloides giganteus was performed via liquid chromatography coupled to high-resolution tandem mass spectrometry (LC-MS/MS). Identification, based on multilocus phylogeny, revealed that our isolate belongs to the species T. endophyticum, which has never been reported in marine environments. Through genome sequencing and genome mining, 53 biosynthetic gene clusters (BGCs) were identified as being related to bioactive natural products, including two NRP-synthetases: one responsible for the biosynthesis of 11- and 14-res peptaibols, and another for the biosynthesis of 15-res. Substrate prediction, based on phylogeny of the adenylation domains in combination with molecular networking, permitted extensive annotation of the mass spectra related to two new series of 15-res peptaibols, which are referred to herein as "endophytins". The analyses of synteny revealed that the origin of the 15-module peptaibol synthetase is related to 18, 19 and 20-module peptaibol synthetases, and suggests that the loss of modules may be a mechanism used by Trichoderma species for peptaibol diversification. This study demonstrates the importance of combining genome mining techniques, mass spectrometry analysis and molecular networks for the discovery of new natural products.
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Zhang SH, Zhao X, Xu R, Yang Y, Tang J, Yue XL, Wang YT, Tan HY, Zhang GG, Li CW. Eleven-Residue Peptaibols Isolated from Trichoderma Longibrachiatum Rifai DMG-3-1-1 and Their Structure-Activity Relationship. Chem Biodivers 2022; 19:e202200627. [PMID: 35921066 DOI: 10.1002/cbdv.202200627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Accepted: 08/03/2022] [Indexed: 11/12/2022]
Abstract
Total 23 eleven-residue peptaibols, including five reported ones (1-5) in our previous work, were isolated from the fungus Trichoderma longibrachiatum Rifai DMG-3-1-1, which was obtained from the mushroom Clitocybe nebularis (Batsch) P. Kumm. The structures of the 13 new peptaibols (6-10 and 12-19) were determined by their NMR and MALDI-MS/MS data, their absolute structures were further determined by Marfey's analyses and their ECD data. Careful comparison of the structures of 1-23 showed that only seven residues varied including the 2nd (Gln 2 /Asn 2 ), 3rd (Ile 3 /Val 3 ), 4th (Ile 4 /Val 4 ), 6th (Pro 6 /Hyp 6 ), 8 th (Pro 6 /Hyp 6 ), 10th (Pro 10 /Hyp 10 ) and 11th (Leuol 11 /Ileol 11 /Valol 11 ) residues. Comparison of the IC 50 s against the three tested cell lines of 1-23 indicated that 2nd, 3rd and 4th amino acid residues affected their cytotoxicities powerfully. Compounds 2, 5, 9, 11, 21 and 22 showed moderate antibacterial activities against Staphylococcus aureus MRSA T144, which also showed stronger cytotoxicities against BV2 and MCF-7 cells.
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Affiliation(s)
- Shu-Hua Zhang
- Beijing Institute of Pharmacology and Toxicology, State Key Laboratory of Toxicology and Medical Countermeasures, Taiping road 27, Haidian District, Beijing, Beijing, CHINA
| | - Xue Zhao
- Beijing Institute of Pharmacology and Toxicology, State Key Laboratory of Toxicology and Medical Countermeasures, Taiping road 27, Haidian District, Beijing, Beijing, CHINA
| | - Rui Xu
- Beijing Institute of Pharmacology and Toxicology, State Key Laboratory of Toxicology and Medical Countermeasures, Taiping road 27, Haidian District, Beijing, Beijing, CHINA
| | - Yu Yang
- Beijing Institute of Pharmacology and Toxicology, State Key Laboratory of Toxicology and Medical Countermeasures, Taiping road 27, Haidian District, Beijing, Beijing, CHINA
| | - Jing Tang
- Beijing Institute of Pharmacology and Toxicology, State Key Laboratory of Toxicology and Medical Countermeasures, Taiping road 27, Haidian District, Beijing, Beijing, CHINA
| | - Xian-Lin Yue
- Beijing Institute of Pharmacology and Toxicology, State Key Laboratory of Toxicology and Medical Countermeasures, Taiping road 27, Haidian District, Beijing, Beijing, CHINA
| | - Yu-Ting Wang
- Beijing Institute of Pharmacology and Toxicology, State Key Laboratory of Toxicology and Medical Countermeasures, Taiping road 27, Haidian District, Beijing, Beijing, CHINA
| | - Hong-Yu Tan
- Beijing Institute of Pharmacology and Toxicology, State Key Laboratory of Toxicology and Medical Countermeasures, Taiping road 27, Haidian District, Beijing, Beijing, CHINA
| | - Guo-Gang Zhang
- Shenyang Pharmaceutical University, School of Traditional Chinese Materia Medica, Wenhua road 103, Shenhe District, Shenyang, Shenyang, CHINA
| | - Chang-Wei Li
- Beijing Institute of Pharmacology and Toxicology, Institute of Pharmacology and Toxicology, Taiping Road 27, Haidian District, Beijing, China, 100850, Beijing, CHINA
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Xiao D, Zhang M, Wu P, Li T, Li W, Zhang L, Yue Q, Chen X, Wei X, Xu Y, Wang C. Halovirs I–K, antibacterial and cytotoxic lipopeptaibols from the plant pathogenic fungus Paramyrothecium roridum NRRL 2183. J Antibiot (Tokyo) 2022; 75:247-257. [DOI: 10.1038/s41429-022-00517-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2021] [Revised: 02/15/2022] [Accepted: 02/20/2022] [Indexed: 11/09/2022]
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Kuvarina AE, Gavryushina IA, Sykonnikov MA, Efimenko TA, Markelova NN, Bilanenko EN, Bondarenko SA, Kokaeva LY, Timofeeva AV, Serebryakova MV, Barashkova AS, Rogozhin EA, Georgieva ML, Sadykova VS. Exploring Peptaibol's Profile, Antifungal, and Antitumor Activity of Emericellipsin A of Emericellopsis Species from Soda and Saline Soils. Molecules 2022; 27:1736. [PMID: 35268835 PMCID: PMC8911692 DOI: 10.3390/molecules27051736] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Revised: 03/03/2022] [Accepted: 03/04/2022] [Indexed: 11/17/2022] Open
Abstract
Features of the biochemical adaptations of alkaliphilic fungi to exist in extreme environments could promote the production of active antibiotic compounds with the potential to control microorganisms, causing infections associated with health care. Thirty-eight alkaliphilic and alkalitolerant Emericellopsis strains (E. alkalina, E. cf. maritima, E. cf. terricola, Emericellopsis sp.) isolated from different saline soda soils and belonging to marine, terrestrial, and soda soil ecological clades were investigated for emericellipsin A (EmiA) biosynthesis, an antifungal peptaibol previously described for Emericellopsis alkalina. The analysis of the Emericellopsis sp. strains belonging to marine and terrestrial clades from chloride soils revealed another novel form with a mass of 1032.7 Da, defined by MALDI-TOF Ms/Ms spectrometers, as the EmiA lacked a hydroxyl (dEmiA). EmiA displayed strong inhibitory effects on cell proliferation and viability of HCT 116 cells in a dose- and time-dependent manners and induced apoptosis.
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Affiliation(s)
- Anastasia E. Kuvarina
- Laboratory for Taxonomic Study and Collection of Cultures of Microorganisms, Gause Institute of New Antibiotics, St. Bolshaya Pirogovskaya, 11, 119021 Moscow, Russia; (A.E.K.); (I.A.G.); (M.A.S.); (T.A.E.); (N.N.M.); (E.A.R.)
| | - Irina A. Gavryushina
- Laboratory for Taxonomic Study and Collection of Cultures of Microorganisms, Gause Institute of New Antibiotics, St. Bolshaya Pirogovskaya, 11, 119021 Moscow, Russia; (A.E.K.); (I.A.G.); (M.A.S.); (T.A.E.); (N.N.M.); (E.A.R.)
| | - Maxim A. Sykonnikov
- Laboratory for Taxonomic Study and Collection of Cultures of Microorganisms, Gause Institute of New Antibiotics, St. Bolshaya Pirogovskaya, 11, 119021 Moscow, Russia; (A.E.K.); (I.A.G.); (M.A.S.); (T.A.E.); (N.N.M.); (E.A.R.)
| | - Tatiana A. Efimenko
- Laboratory for Taxonomic Study and Collection of Cultures of Microorganisms, Gause Institute of New Antibiotics, St. Bolshaya Pirogovskaya, 11, 119021 Moscow, Russia; (A.E.K.); (I.A.G.); (M.A.S.); (T.A.E.); (N.N.M.); (E.A.R.)
| | - Natalia N. Markelova
- Laboratory for Taxonomic Study and Collection of Cultures of Microorganisms, Gause Institute of New Antibiotics, St. Bolshaya Pirogovskaya, 11, 119021 Moscow, Russia; (A.E.K.); (I.A.G.); (M.A.S.); (T.A.E.); (N.N.M.); (E.A.R.)
| | - Elena N. Bilanenko
- Faculty of Biology, Lomonosov Moscow State University, 1-12 Leninskie Gory, 119234 Moscow, Russia; (E.N.B.); (S.A.B.); (L.Y.K.)
| | - Sofiya A. Bondarenko
- Faculty of Biology, Lomonosov Moscow State University, 1-12 Leninskie Gory, 119234 Moscow, Russia; (E.N.B.); (S.A.B.); (L.Y.K.)
| | - Lyudmila Y. Kokaeva
- Faculty of Biology, Lomonosov Moscow State University, 1-12 Leninskie Gory, 119234 Moscow, Russia; (E.N.B.); (S.A.B.); (L.Y.K.)
| | - Alla V. Timofeeva
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119991 Moscow, Russia; (A.V.T.); (M.V.S.)
| | - Marina V. Serebryakova
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119991 Moscow, Russia; (A.V.T.); (M.V.S.)
| | - Anna S. Barashkova
- Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, RAS, St. Miklukho-Maklaya, 16/10, 117997 Moscow, Russia;
| | - Eugene A. Rogozhin
- Laboratory for Taxonomic Study and Collection of Cultures of Microorganisms, Gause Institute of New Antibiotics, St. Bolshaya Pirogovskaya, 11, 119021 Moscow, Russia; (A.E.K.); (I.A.G.); (M.A.S.); (T.A.E.); (N.N.M.); (E.A.R.)
- Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, RAS, St. Miklukho-Maklaya, 16/10, 117997 Moscow, Russia;
| | - Marina L. Georgieva
- Laboratory for Taxonomic Study and Collection of Cultures of Microorganisms, Gause Institute of New Antibiotics, St. Bolshaya Pirogovskaya, 11, 119021 Moscow, Russia; (A.E.K.); (I.A.G.); (M.A.S.); (T.A.E.); (N.N.M.); (E.A.R.)
- Faculty of Biology, Lomonosov Moscow State University, 1-12 Leninskie Gory, 119234 Moscow, Russia; (E.N.B.); (S.A.B.); (L.Y.K.)
| | - Vera S. Sadykova
- Laboratory for Taxonomic Study and Collection of Cultures of Microorganisms, Gause Institute of New Antibiotics, St. Bolshaya Pirogovskaya, 11, 119021 Moscow, Russia; (A.E.K.); (I.A.G.); (M.A.S.); (T.A.E.); (N.N.M.); (E.A.R.)
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Lam YTH, Ricardo MG, Rennert R, Frolov A, Porzel A, Brandt W, Stark P, Westermann B, Arnold N. Rare Glutamic Acid Methyl Ester Peptaibols from Sepedonium ampullosporum Damon KSH 534 Exhibit Promising Antifungal and Anticancer Activity. Int J Mol Sci 2021; 22:ijms222312718. [PMID: 34884518 PMCID: PMC8657771 DOI: 10.3390/ijms222312718] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Revised: 11/17/2021] [Accepted: 11/23/2021] [Indexed: 01/29/2023] Open
Abstract
Fungal species of genus Sepedonium are rich sources of diverse secondary metabolites (e.g., alkaloids, peptaibols), which exhibit variable biological activities. Herein, two new peptaibols, named ampullosporin F (1) and ampullosporin G (2), together with five known compounds, ampullosporin A (3), peptaibolin (4), chrysosporide (5), c(Trp-Ser) (6) and c(Trp-Ala) (7), have been isolated from the culture of Sepedonium ampullosporum Damon strain KSH534. The structures of 1 and 2 were elucidated based on ESI-HRMSn experiments and intense 1D and 2D NMR analyses. The sequence of ampullosporin F (1) was determined to be Ac-Trp1-Ala2-Aib3-Aib4-Leu5-Aib6-Gln7-Aib8-Aib9-Aib10-GluOMe11-Leu12-Aib13-Gln14-Leuol15, while ampullosporin G (2) differs from 1 by exchanging the position of Gln7 with GluOMe11. Furthermore, the total synthesis of 1 and 2 was carried out on solid-phase to confirm the absolute configuration of all chiral amino acids as L. In addition, ampullosporin F (1) and G (2) showed significant antifungal activity against B. cinerea and P. infestans, but were inactive against S. tritici. Cell viability assays using human prostate (PC-3) and colorectal (HT-29) cancer cells confirmed potent anticancer activities of 1 and 2. Furthermore, a molecular docking study was performed in silico as an attempt to explain the structure-activity correlation of the characteristic ampullosporins (1–3).
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Affiliation(s)
- Yen T. H. Lam
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, D-06120 Halle (Saale), Germany; (Y.T.H.L.); (M.G.R.); (R.R.); (A.F.); (A.P.); (W.B.); (P.S.); (B.W.)
- Department of Organic Chemistry, Faculty of Chemistry, Hanoi National University of Education, Hanoi 100000, Vietnam
| | - Manuel G. Ricardo
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, D-06120 Halle (Saale), Germany; (Y.T.H.L.); (M.G.R.); (R.R.); (A.F.); (A.P.); (W.B.); (P.S.); (B.W.)
- Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, D-14476 Potsdam, Germany
| | - Robert Rennert
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, D-06120 Halle (Saale), Germany; (Y.T.H.L.); (M.G.R.); (R.R.); (A.F.); (A.P.); (W.B.); (P.S.); (B.W.)
| | - Andrej Frolov
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, D-06120 Halle (Saale), Germany; (Y.T.H.L.); (M.G.R.); (R.R.); (A.F.); (A.P.); (W.B.); (P.S.); (B.W.)
- Department of Biochemistry, Faculty of Biology, St. Petersburg State University, 199004 St. Petersburg, Russia
| | - Andrea Porzel
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, D-06120 Halle (Saale), Germany; (Y.T.H.L.); (M.G.R.); (R.R.); (A.F.); (A.P.); (W.B.); (P.S.); (B.W.)
| | - Wolfgang Brandt
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, D-06120 Halle (Saale), Germany; (Y.T.H.L.); (M.G.R.); (R.R.); (A.F.); (A.P.); (W.B.); (P.S.); (B.W.)
| | - Pauline Stark
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, D-06120 Halle (Saale), Germany; (Y.T.H.L.); (M.G.R.); (R.R.); (A.F.); (A.P.); (W.B.); (P.S.); (B.W.)
| | - Bernhard Westermann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, D-06120 Halle (Saale), Germany; (Y.T.H.L.); (M.G.R.); (R.R.); (A.F.); (A.P.); (W.B.); (P.S.); (B.W.)
| | - Norbert Arnold
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, D-06120 Halle (Saale), Germany; (Y.T.H.L.); (M.G.R.); (R.R.); (A.F.); (A.P.); (W.B.); (P.S.); (B.W.)
- Correspondence: ; Tel.: +49-345-5582-1310
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