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For: Song X, Yang Q, Bai Y, Gong K, Wu T, Yu T, Pei Q, Duan W, Huang Z, Wang Z, Liu Z, Kang X, Zhao W, Ma X. Comprehensive analysis of SSRs and database construction using all complete gene-coding sequences in major horticultural and representative plants. Hortic Res 2021;8:122. [PMID: 34059664 PMCID: PMC8167114 DOI: 10.1038/s41438-021-00562-7] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2020] [Revised: 02/10/2021] [Accepted: 03/14/2021] [Indexed: 05/05/2023]
Number Cited by Other Article(s)
1
Li T, Cai S, Cai Z, Fu Y, Liu W, Zhu X, Lai C, Cui L, Pan W, Li Y. TriticeaeSSRdb: a comprehensive database of simple sequence repeats in Triticeae. FRONTIERS IN PLANT SCIENCE 2024;15:1412953. [PMID: 38841284 PMCID: PMC11150838 DOI: 10.3389/fpls.2024.1412953] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/06/2024] [Accepted: 05/08/2024] [Indexed: 06/07/2024]
2
Pires GP, Fioresi VS, Canal D, Canal DC, Fernandes M, Brustolini OJB, de Avelar Carpinetti P, Ferreira A, da Silva Ferreira MF. Effects of trimer repeats on Psidium guajava L. gene expression and prospection of functional microsatellite markers. Sci Rep 2024;14:9811. [PMID: 38684872 PMCID: PMC11059378 DOI: 10.1038/s41598-024-60417-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2023] [Accepted: 04/23/2024] [Indexed: 05/02/2024]  Open
3
Wu T, Liu Z, Yu T, Zhou R, Yang Q, Cao R, Nie F, Ma X, Bai Y, Song X. Flowering genes identification, network analysis, and database construction for 837 plants. HORTICULTURE RESEARCH 2024;11:uhae013. [PMID: 38585015 PMCID: PMC10995624 DOI: 10.1093/hr/uhae013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/21/2023] [Accepted: 01/02/2024] [Indexed: 04/09/2024]
4
Liu Z, Shen S, Wang Y, Sun S, Yu T, Fu Y, Zhou R, Li C, Cao R, Zhang Y, Li N, Sun L, Song X. The genome of Stephania japonica provides insights into the biosynthesis of cepharanthine. Cell Rep 2024;43:113832. [PMID: 38381605 DOI: 10.1016/j.celrep.2024.113832] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Revised: 12/28/2023] [Accepted: 02/02/2024] [Indexed: 02/23/2024]  Open
5
Koubínová D, GoFlag Consortium, Grant JR. Microsatellite Content in 397 Nuclear Exons and Their Flanking Regions in the Fern Family Ophioglossaceae. PLANTS (BASEL, SWITZERLAND) 2024;13:713. [PMID: 38475562 DOI: 10.3390/plants13050713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Revised: 11/02/2023] [Accepted: 11/06/2023] [Indexed: 03/14/2024]
6
Feng S, Liu Z, Chen H, Li N, Yu T, Zhou R, Nie F, Guo D, Ma X, Song X. PHGD: An integrative and user-friendly database for plant hormone-related genes. IMETA 2024;3:e164. [PMID: 38868516 PMCID: PMC10989150 DOI: 10.1002/imt2.164] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Revised: 11/19/2023] [Accepted: 12/17/2023] [Indexed: 06/14/2024]
7
Zhang H, Zhang W, Meng S, Hui L, Liu X, Chen W, Yan W, Chen X, Chen H. Construction of a high-density genetic map for yardlong bean and identification of ANT1 as a regulator of anthocyanin biosynthesis. HORTICULTURE RESEARCH 2024;11:uhad247. [PMID: 38274647 PMCID: PMC10809905 DOI: 10.1093/hr/uhad247] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Accepted: 11/12/2023] [Indexed: 01/27/2024]
8
Liu Z, Fu Y, Wang H, Zhang Y, Han J, Wang Y, Shen S, Li C, Jiang M, Yang X, Song X. The high-quality sequencing of the Brassica rapa 'XiangQingCai' genome and exploration of genome evolution and genes related to volatile aroma. HORTICULTURE RESEARCH 2023;10:uhad187. [PMID: 37899953 PMCID: PMC10611556 DOI: 10.1093/hr/uhad187] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/07/2023] [Accepted: 09/08/2023] [Indexed: 10/31/2023]
9
Yan C, Yang T, Wang B, Yang H, Wang J, Yu Q. Genome-Wide Identification of the WD40 Gene Family in Tomato (Solanum lycopersicum L.). Genes (Basel) 2023;14:1273. [PMID: 37372453 DOI: 10.3390/genes14061273] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Revised: 06/01/2023] [Accepted: 06/14/2023] [Indexed: 06/29/2023]  Open
10
Shen S, Li N, Wang Y, Zhou R, Sun P, Lin H, Chen W, Yu T, Liu Z, Wang Z, Tan X, Zhu C, Feng S, Zhang Y, Song X. High-quality ice plant reference genome analysis provides insights into genome evolution and allows exploration of genes involved in the transition from C3 to CAM pathways. PLANT BIOTECHNOLOGY JOURNAL 2022;20:2107-2122. [PMID: 35838009 PMCID: PMC9616530 DOI: 10.1111/pbi.13892] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/24/2022] [Revised: 05/19/2022] [Accepted: 07/10/2022] [Indexed: 06/15/2023]
11
Comparative analysis of microsatellites in coding regions provides insights into the adaptability of the giant panda, polar bear and brown bear. Genetica 2022;150:355-366. [DOI: 10.1007/s10709-022-00173-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Accepted: 09/13/2022] [Indexed: 11/27/2022]
12
Yu T, Ma X, Liu Z, Feng X, Wang Z, Ren J, Cao R, Zhang Y, Nie F, Song X. TVIR: a comprehensive vegetable information resource database for comparative and functional genomic studies. HORTICULTURE RESEARCH 2022;9:uhac213. [PMID: 36483087 PMCID: PMC9719039 DOI: 10.1093/hr/uhac213] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/08/2022] [Accepted: 09/14/2022] [Indexed: 06/17/2023]
13
Liu Z, Li N, Yu T, Wang Z, Wang J, Ren J, He J, Huang Y, Shi K, Yang Q, Wu T, Lin H, Song X. The Brassicaceae genome resource (TBGR): A comprehensive genome platform for Brassicaceae plants. PLANT PHYSIOLOGY 2022;190:226-237. [PMID: 35670735 PMCID: PMC9434321 DOI: 10.1093/plphys/kiac266] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Accepted: 05/03/2022] [Indexed: 06/09/2023]
14
Comprehensive Analyses of Simple Sequence Repeat (SSR) in Bamboo Genomes and Development of SSR Markers with Peroxidase Genes. Genes (Basel) 2022;13:genes13091518. [PMID: 36140687 PMCID: PMC9498332 DOI: 10.3390/genes13091518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Revised: 08/17/2022] [Accepted: 08/20/2022] [Indexed: 11/21/2022]  Open
15
Yu T, Bai Y, Liu Z, Wang Z, Yang Q, Wu T, Feng S, Zhang Y, Shen S, Li Q, Gu L, Song X. Large-scale analyses of heat shock transcription factors and database construction based on whole-genome genes in horticultural and representative plants. HORTICULTURE RESEARCH 2022;9:uhac035. [PMID: 35184193 PMCID: PMC9123238 DOI: 10.1093/hr/uhac035] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Revised: 12/18/2021] [Accepted: 01/11/2022] [Indexed: 06/14/2023]
16
Meng F, Tang Q, Chu T, Li X, Lin Y, Song X, Chen W. TCMPG: an integrative database for traditional Chinese medicine plant genomes. HORTICULTURE RESEARCH 2022;9:uhac060. [PMID: 35591924 PMCID: PMC9113410 DOI: 10.1093/hr/uhac060] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Accepted: 02/25/2022] [Indexed: 05/12/2023]
17
An empirical analysis of mtSSRs: could microsatellite distribution patterns explain the evolution of mitogenomes in plants? Funct Integr Genomics 2021;22:35-53. [PMID: 34751851 DOI: 10.1007/s10142-021-00815-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2021] [Revised: 10/18/2021] [Accepted: 10/19/2021] [Indexed: 10/19/2022]
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