1
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Huang X, Liang Z, Yang X, Piao M, Huang Z, Zhang Z. Multilevel Anti-counterfeiting Barcode with Enhanced Information Encryption Based on Stimulus-Responsive Digital Polymers. ACS APPLIED MATERIALS & INTERFACES 2024; 16:43075-43082. [PMID: 39016017 DOI: 10.1021/acsami.4c08408] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/18/2024]
Abstract
In response to the escalating challenges of counterfeiting due to technological and socioeconomic advancements, a novel trilevel anti-counterfeiting Quick Response (QR) code system has been developed. This system integrates digital polymers with QR code and stimulus-responsive chromophores, i.e., rhodamine B (RB), rhodamine 6G (R6G), and spiropyran (SP), to provide a sophisticated security solution. This advanced barcode remains concealed until specific stimuli reveal it and can be scanned by a smartphone, enabling first and second level anti-counterfeiting. For the third level of security, the encrypted information within the digital polymers can only be deciphered using tandem mass spectrometry. This innovative approach not only enhances security features but also offers reversible visibility and a complex verification process. This trilevel system surpasses traditional single-level anti-counterfeiting methods and holds significant potential for future applications in protecting brand authenticity and managing data storage, contributing new concepts and techniques to the field of high-security anti-counterfeiting materials.
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Affiliation(s)
- Xiaoman Huang
- College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou 215123, China
| | - Zhishan Liang
- College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou 215123, China
| | - Xiaojie Yang
- College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou 215123, China
| | - Minghao Piao
- Collaborative Innovation Center of Novel Software Technology and Industrialization, School of Computer Science and Technology, Soochow University, Suzhou 215123, China
| | - Zhihao Huang
- College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou 215123, China
| | - Zhengbiao Zhang
- College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou 215123, China
- State Key Laboratory of Radiation Medicine and Protection, Soochow University, Suzhou 215123, China
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2
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Szatko M, Forysiak W, Kozub S, Andruniów T, Szweda R. Revealing the Effect of Stereocontrol on Intermolecular Interactions between Abiotic, Sequence-Defined Polyurethanes and a Ligand. ACS Biomater Sci Eng 2024; 10:3727-3738. [PMID: 38804015 PMCID: PMC11167595 DOI: 10.1021/acsbiomaterials.4c00456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2024] [Revised: 04/26/2024] [Accepted: 05/14/2024] [Indexed: 05/29/2024]
Abstract
The development of precision polymer synthesis has facilitated access to a diverse library of abiotic structures wherein chiral monomers are positioned at specific locations within macromolecular chains. These structures are anticipated to exhibit folding characteristics similar to those of biotic macromolecules and possess comparable functionalities. However, the extensive sequence space and numerous variables make selecting a sequence with the desired function challenging. Therefore, revealing sequence-function dependencies and developing practical tools are necessary to analyze their conformations and molecular interactions. In this study, we investigate the effect of stereochemistry, which dictates the spatial location of backbone and pendant groups, on the interaction between sequence-defined oligourethanes and bisphenol A ligands. Various methods are explored to analyze the receptor-like properties of model oligomers and the ligand. The accuracy of molecular dynamics simulations and experimental techniques is assessed to uncover the impact of discrete changes in stereochemical arrangements on the structures of the resulting complexes and their binding strengths. Detailed computational investigations providing atomistic details show that the formed complexes demonstrate significant structural diversity depending on the sequence of stereocenters, thus affecting the oligomer-ligand binding strength. Among the tested techniques, the fluorescence spectroscopy data, fitted to the Stern-Volmer equation, are consistently aligned with the calculations, thus validating the developed simulation methodology. The developed methodology opens a way to engineer the structure of sequence-defined oligomers with receptor-like functionality to explore their practical applications, e.g., as sensory materials.
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Affiliation(s)
- Maksymilian Szatko
- Łukasiewicz
Research Network—PORT Polish Center for Technology Development, Stabłowicka 147, 54-066 Wroclaw, Poland
- Department
of Chemistry, Wrocław University of
Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wroclaw, Poland
| | - Weronika Forysiak
- Łukasiewicz
Research Network—PORT Polish Center for Technology Development, Stabłowicka 147, 54-066 Wroclaw, Poland
- Faculty
of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Sara Kozub
- Łukasiewicz
Research Network—PORT Polish Center for Technology Development, Stabłowicka 147, 54-066 Wroclaw, Poland
| | - Tadeusz Andruniów
- Department
of Chemistry, Wrocław University of
Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wroclaw, Poland
| | - Roza Szweda
- Łukasiewicz
Research Network—PORT Polish Center for Technology Development, Stabłowicka 147, 54-066 Wroclaw, Poland
- Center
for Advanced Technologies, Adam Mickiewicz
University, Uniwersytetu Poznańskiego 8, 61-614 Poznan, Poland
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3
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Yang B, Cui T, Guo L, Dong L, Wu J, Xing Y, Xu Y, Chen J, Wang Y, Cui Z, Dong Y. Advanced Smart Biomaterials for Regenerative Medicine and Drug Delivery Based on Phosphoramidite Chemistry: From Oligonucleotides to Precision Polymers. Biomacromolecules 2024; 25:2701-2714. [PMID: 38608139 DOI: 10.1021/acs.biomac.4c00259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/14/2024]
Abstract
Over decades of development, while phosphoramidite chemistry has been known as the leading method in commercial synthesis of oligonucleotides, it has also revolutionized the fabrication of sequence-defined polymers (SDPs), offering novel functional materials in polymer science and clinical medicine. This review has introduced the evolution of phosphoramidite chemistry, emphasizing its development from the synthesis of oligonucleotides to the creation of universal SDPs, which have unlocked the potential for designing programmable smart biomaterials with applications in diverse areas including data storage, regenerative medicine and drug delivery. The key methodologies, functions, biomedical applications, and future challenges in SDPs, have also been summarized in this review, underscoring the significance of breakthroughs in precisely synthesized materials.
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Affiliation(s)
- Bo Yang
- Sinopec (Beijing) Research Institute of Chemical Industry CO., Ltd., Beijing 100013, P. R. China
| | - Ting Cui
- Sinopec (Beijing) Research Institute of Chemical Industry CO., Ltd., Beijing 100013, P. R. China
| | - Liang Guo
- Sinopec (Beijing) Research Institute of Chemical Industry CO., Ltd., Beijing 100013, P. R. China
| | - Lianqiang Dong
- CAS Key Laboratory of Colloid, Interface and Chemical Thermodynamics, Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jun Wu
- CAS Key Laboratory of Colloid, Interface and Chemical Thermodynamics, Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yongzheng Xing
- National Engineering Research Center for Colloidal Materials, School of Chemistry and Chemical Engineering, Shandong University, Jinan 250100, China
| | - Yun Xu
- Center for Medical Device Evaluation, China Food and Drug Administration (CFDA), Beijing 100084, China
| | - Jian Chen
- Sinopec (Beijing) Research Institute of Chemical Industry CO., Ltd., Beijing 100013, P. R. China
| | - Yufei Wang
- Sinopec (Beijing) Research Institute of Chemical Industry CO., Ltd., Beijing 100013, P. R. China
| | - Zhonghui Cui
- Sinopec (Beijing) Research Institute of Chemical Industry CO., Ltd., Beijing 100013, P. R. China
| | - Yuanchen Dong
- CAS Key Laboratory of Colloid, Interface and Chemical Thermodynamics, Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, China
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4
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Nerantzaki M, Husser C, Ryckelynck M, Lutz JF. Exchanging and Releasing Information in Synthetic Digital Polymers Using a Strand-Displacement Strategy. J Am Chem Soc 2024; 146:6456-6460. [PMID: 38286022 DOI: 10.1021/jacs.3c13953] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2024]
Abstract
Toehold-mediated strand displacement (TMSD) was tested as a tool to edit information in synthetic digital polymers. Uniform DNA-polymer biohybrid macromolecules were first synthesized by automated phosphoramidite chemistry and characterized by HPLC, mass spectrometry, and polyacrylamide gel electrophoresis (PAGE). These precursors were diblock structures containing a synthetic poly(phosphodiester) (PPDE) segment covalently attached to a single-stranded DNA sequence. Three types of biohybrids were prepared herein: a substrate containing an accessible toehold as well as input and output macromolecules. The substrate and the input macromolecules contained noncoded PPDE homopolymers, whereas the output macromolecule contained a digitally encoded segment. After hybridization of the substrate with the output, incubation in the presence of the input led to efficient TMSD and the release of the digital segment. TMSD can therefore be used to erase or rewrite information in self-assembled biohybrid superstructures. Furthermore, it was found in this work that the conjugation of DNA single strands to synthetic segments of chosen lengths greatly facilitates the characterization and PAGE visualization of the TMSD process.
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Affiliation(s)
- Maria Nerantzaki
- Université de Strasbourg, CNRS, ISIS, 8 allée Gaspard Monge, 67000 Strasbourg, France
| | - Claire Husser
- Université de Strasbourg, CNRS, Architecture et Réactivité de l'ARN, UPR 9002, 2 allée Konrad Roentgen, 67084 Strasbourg, France
| | - Michael Ryckelynck
- Université de Strasbourg, CNRS, Architecture et Réactivité de l'ARN, UPR 9002, 2 allée Konrad Roentgen, 67084 Strasbourg, France
| | - Jean-François Lutz
- Université de Strasbourg, CNRS, ISIS, 8 allée Gaspard Monge, 67000 Strasbourg, France
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5
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Shi Q, Zhang Z, Liu S. Precision Sequence-Defined Polymers: From Sequencing to Biological Functions. Angew Chem Int Ed Engl 2024; 63:e202313370. [PMID: 37875462 DOI: 10.1002/anie.202313370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Revised: 10/20/2023] [Accepted: 10/24/2023] [Indexed: 10/26/2023]
Abstract
Precise sequence-defined polymers (SDPs) with uniform chain-to-chain structure including chain length, unit sequence, and end functionalities represent the pinnacle of sophistication in the realm of polymer science. For example, the absolute control over the unit sequence of SDPs allows for the bottom-up design of polymers with hierarchical microstructures and functions. Accompanied with the development of synthetic techniques towards precision SDPs, the decoding of SDP sequences and construction of advanced functions irreplaceable by other synthetic materials is of central importance. In this Minireview, we focus on recent advances in SDP sequencing techniques including tandem mass spectrometry (MS), chemically assisted primary MS, as well as other non-destructive sequencing methods such as nuclear magnetic resonance (NMR) spectroscopy, circular dichroism (CD), and nanopore sequencing. Additionally, we delve into the promising prospects of SDP functions in the area of cutting-edge biological research. Topics of exploration include gene delivery systems, the development of hybrid materials combining SDPs and nucleic acids, protein recognition and regulation, as well as the interplay between chirality and biological functions. A brief outlook towards the future directions of SDPs is also presented.
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Affiliation(s)
- Qiangqiang Shi
- Department of Pharmacy, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, and Key Laboratory of Precision and Intelligent Chemistry, Department of Polymer Science and Engineering, University of Science and Technology of China, 96 Jinzhai Road, Hefei, Anhui, 230026, China
| | - Zhengbiao Zhang
- State and Local Joint Engineering Laboratory for Novel Functional Polymeric Materials, College of Chemistry, Chemical Engineering and Materials Science, State Key Laboratory of Radiation Medicine and Protection, Soochow University, Suzhou, 215123, China
| | - Shiyong Liu
- Department of Pharmacy, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, and Key Laboratory of Precision and Intelligent Chemistry, Department of Polymer Science and Engineering, University of Science and Technology of China, 96 Jinzhai Road, Hefei, Anhui, 230026, China
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6
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Reichstein J, Müssig S, Wintzheimer S, Mandel K. Communicating Supraparticles to Enable Perceptual, Information-Providing Matter. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2023:e2306728. [PMID: 37786273 DOI: 10.1002/adma.202306728] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Revised: 08/04/2023] [Indexed: 10/04/2023]
Abstract
Materials are the fundament of the physical world, whereas information and its exchange are the centerpieces of the digital world. Their fruitful synergy offers countless opportunities for realizing desired digital transformation processes in the physical world of materials. Yet, to date, a perfect connection between these worlds is missing. From the perspective, this can be achieved by overcoming the paradigm of considering materials as passive objects and turning them into perceptual, information-providing matter. This matter is capable of communicating associated digitally stored information, for example, its origin, fate, and material type as well as its intactness on demand. Herein, the concept of realizing perceptual, information-providing matter by integrating customizable (sub-)micrometer-sized communicating supraparticles (CSPs) is presented. They are assembled from individual nanoparticulate and/or (macro)molecular building blocks with spectrally differentiable signals that are either robust or stimuli-susceptible. Their combination yields functional signal characteristics that provide an identification signature and one or multiple stimuli-recorder features. This enables CSPs to communicate associated digital information on the tagged material and its encountered stimuli histories upon signal readout anywhere across its life cycle. Ultimately, CSPs link the materials and digital worlds with numerous use cases thereof, in particular fostering the transition into an age of sustainability.
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Affiliation(s)
- Jakob Reichstein
- Department of Chemistry and Pharmacy, Inorganic Chemistry, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Egerlandstraße 1, D-91058, Erlangen, Germany
| | - Stephan Müssig
- Department of Chemistry and Pharmacy, Inorganic Chemistry, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Egerlandstraße 1, D-91058, Erlangen, Germany
| | - Susanne Wintzheimer
- Department of Chemistry and Pharmacy, Inorganic Chemistry, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Egerlandstraße 1, D-91058, Erlangen, Germany
- Fraunhofer-Institute for Silicate Research ISC, Neunerplatz 2, D-97082, Würzburg, Germany
| | - Karl Mandel
- Department of Chemistry and Pharmacy, Inorganic Chemistry, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Egerlandstraße 1, D-91058, Erlangen, Germany
- Fraunhofer-Institute for Silicate Research ISC, Neunerplatz 2, D-97082, Würzburg, Germany
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7
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Yu L, Chen B, Li Z, Huang Q, He K, Su Y, Han Z, Zhou Y, Zhu X, Yan D, Dong R. Digital synthetic polymers for information storage. Chem Soc Rev 2023; 52:1529-1548. [PMID: 36786068 DOI: 10.1039/d2cs01022d] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/15/2023]
Abstract
Digital synthetic polymers with uniform chain lengths and defined monomer sequences have recently become intriguing alternatives to traditional silicon-based information devices or natural biomacromolecules for data storage. The structural diversity of information-containing macromolecules endows the digital synthetic polymers with higher stability and storage density but less occupied space. Through subtly designing each unit of coded structure, the information can be readily encoded into digital synthetic polymers in a more economical scheme and more decodable, opening up new avenues for molecular digital data storage with high-level security. This tutorial review summarizes recent advances in salient features of digital synthetic polymers for data storage, including encoding, decoding, editing, erasing, encrypting, and repairing. The current challenges and outlook are finally discussed to offer potential solution guidance and new perspectives for the creation of next-generation digital synthetic polymers and broaden the scope of their applicability.
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Affiliation(s)
- Li Yu
- Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China.
| | - Baiyang Chen
- Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China.
| | - Ziying Li
- Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China.
| | - Qijing Huang
- Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China.
| | - Kaiyuan He
- School of Chemistry and Chemical Engineering, Frontiers Science Centre for Transformative Molecules, Shanghai Key Laboratory for Molecular Engineering of Chiral Drugs, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China.
| | - Yue Su
- School of Chemistry and Chemical Engineering, Frontiers Science Centre for Transformative Molecules, Shanghai Key Laboratory for Molecular Engineering of Chiral Drugs, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China.
| | - Zeguang Han
- Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China.
| | - Yongfeng Zhou
- School of Chemistry and Chemical Engineering, Frontiers Science Centre for Transformative Molecules, Shanghai Key Laboratory for Molecular Engineering of Chiral Drugs, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China.
| | - Xinyuan Zhu
- School of Chemistry and Chemical Engineering, Frontiers Science Centre for Transformative Molecules, Shanghai Key Laboratory for Molecular Engineering of Chiral Drugs, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China.
| | - Deyue Yan
- School of Chemistry and Chemical Engineering, Frontiers Science Centre for Transformative Molecules, Shanghai Key Laboratory for Molecular Engineering of Chiral Drugs, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China.
| | - Ruijiao Dong
- Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, 200240, China.
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8
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Shi Q, Yin H, Song R, Xu J, Tan J, Zhou X, Cen J, Deng Z, Tong H, Cui C, Zhang Y, Li X, Zhang Z, Liu S. Digital micelles of encoded polymeric amphiphiles for direct sequence reading and ex vivo label-free quantification. Nat Chem 2023; 15:257-270. [PMID: 36329179 DOI: 10.1038/s41557-022-01076-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Accepted: 09/26/2022] [Indexed: 11/05/2022]
Abstract
Identification and quantification of synthetic polymers in complex biological milieu are crucial for delivery, sensing and scaffolding functions, but conventional techniques based on imaging probe labellings only afford qualitative results. Here we report modular construction of precise sequence-defined amphiphilic polymers that self-assemble into digital micelles with contour lengths strictly regulated by oligourethane sequences. Direct sequence reading is accomplished with matrix-assisted laser desorption/ionization (MALDI) tandem mass spectrometry, facilitated by high-affinity binding of alkali metal ions with poly(ethylene glycol) dendrons and selective cleavage of benzyl-carbamate linkages. A mixture of four types of digital micelles could be identified, sequence-decoded and quantified by MALDI and MALDI imaging at cellular, organ and tissue slice levels upon in vivo administration, enabling direct comparison of biological properties for each type of digital micelle in the same animal. The concept of digital micelles and encoded amphiphiles capable of direct sequencing and high-throughput label-free quantification could be exploited for next-generation precision nanomedicine designs (such as digital lipids) and protein corona studies.
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Affiliation(s)
- Qiangqiang Shi
- CAS Key Laboratory of Soft Matter Chemistry, Department of Polymer Science and Engineering, School of Chemistry and Materials Science, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), University of Science and Technology of China, Hefei, China
| | - Hao Yin
- Mass Spectrometry Lab, Instruments Center for Physical Science, University of Science and Technology of China, Hefei, China
| | - Rundi Song
- CAS Key Laboratory of Soft Matter Chemistry, Department of Polymer Science and Engineering, School of Chemistry and Materials Science, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), University of Science and Technology of China, Hefei, China
| | - Jie Xu
- CAS Key Laboratory of Soft Matter Chemistry, Department of Polymer Science and Engineering, School of Chemistry and Materials Science, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), University of Science and Technology of China, Hefei, China
| | - Jiajia Tan
- CAS Key Laboratory of Soft Matter Chemistry, Department of Polymer Science and Engineering, School of Chemistry and Materials Science, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), University of Science and Technology of China, Hefei, China
| | - Xin Zhou
- CAS Key Laboratory of Soft Matter Chemistry, Department of Polymer Science and Engineering, School of Chemistry and Materials Science, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), University of Science and Technology of China, Hefei, China
| | - Jie Cen
- CAS Key Laboratory of Soft Matter Chemistry, Department of Polymer Science and Engineering, School of Chemistry and Materials Science, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), University of Science and Technology of China, Hefei, China
| | - Zhengyu Deng
- CAS Key Laboratory of Soft Matter Chemistry, Department of Polymer Science and Engineering, School of Chemistry and Materials Science, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), University of Science and Technology of China, Hefei, China
| | - Huimin Tong
- Center for Instrumental Analysis, Xi'an Jiaotong University, Xi'an, China
| | - Chenhui Cui
- School of Chemistry, MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, Xi'an Jiaotong University, Xi'an, China
| | - Yanfeng Zhang
- School of Chemistry, MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, Xi'an Jiaotong University, Xi'an, China
| | - Xiaopeng Li
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, China
| | - Zhengbiao Zhang
- State and Local Joint Engineering Laboratory for Novel Functional Polymeric Materials, College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou, China
| | - Shiyong Liu
- CAS Key Laboratory of Soft Matter Chemistry, Department of Polymer Science and Engineering, School of Chemistry and Materials Science, Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), University of Science and Technology of China, Hefei, China.
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9
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Ren X, Guo C, Li X, Wu Y, Zhang Y, Li S, Zhang K. Protecting-Group-Free Iterative Divergent/Convergent Method for Preparing Sequence-Defined Polymers. Macromolecules 2023. [DOI: 10.1021/acs.macromol.2c02090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Xiangzhu Ren
- State Key Laboratory of Polymer Physics and Chemistry, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Changjuan Guo
- State Key Laboratory of Polymer Physics and Chemistry, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xijuan Li
- College of Chemistry, Beijing Normal University, Beijing 100875, China
| | - Ying Wu
- College of Chemistry, Beijing Normal University, Beijing 100875, China
| | - Yu Zhang
- College of Chemistry, Beijing Normal University, Beijing 100875, China
| | - Shumu Li
- State Key Laboratory of Polymer Physics and Chemistry, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, P. R. China
| | - Ke Zhang
- State Key Laboratory of Polymer Physics and Chemistry, Institute of Chemistry, The Chinese Academy of Sciences, Beijing 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, China
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10
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Nifant’ev IE, Ivchenko PV. Design, Synthesis and Actual Applications of the Polymers Containing Acidic P-OH Fragments: Part 1. Polyphosphodiesters. Int J Mol Sci 2022; 23:14857. [PMID: 36499185 PMCID: PMC9738169 DOI: 10.3390/ijms232314857] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2022] [Revised: 11/20/2022] [Accepted: 11/23/2022] [Indexed: 12/03/2022] Open
Abstract
Among natural and synthetic polymers, main-chain phosphorus-containing polyacids (PCPAs) (polyphosphodiesters), stand in a unique position at the intersection of chemistry, physics, biology and medicine. The structural similarity of polyphosphodiesters PCPAs to natural nucleic and teichoic acids, their biocompatibility, mimicking to biomolecules providing the 'stealth effect', high bone mineral affinity of polyphosphodiesters resulting in biomineralization at physiological conditions, and adjustable hydrolytic stability of polyphosphodiesters are the basis for various biomedical, industrial and household applications of this type of polymers. In the present review, we discuss the synthesis, properties and actual applications of polyphosphodiesters.
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Affiliation(s)
- Ilya E. Nifant’ev
- A.V. Topchiev Institute of Petrochemical Synthesis RAS, 29 Leninsky Pr., 119991 Moscow, Russia
- Chemistry Department, M.V. Lomonosov Moscow State University, 1–3 Leninskie Gory, 119991 Moscow, Russia
| | - Pavel V. Ivchenko
- A.V. Topchiev Institute of Petrochemical Synthesis RAS, 29 Leninsky Pr., 119991 Moscow, Russia
- Chemistry Department, M.V. Lomonosov Moscow State University, 1–3 Leninskie Gory, 119991 Moscow, Russia
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11
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Cwynar P, Pasikowski P, Szweda R. One-pot approach for multi-step, iterative synthesis of sequence-defined oligocarbamates. Eur Polym J 2022. [DOI: 10.1016/j.eurpolymj.2022.111706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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12
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Bohn P, Weisel MP, Wolfs J, Meier MAR. Molecular data storage with zero synthetic effort and simple read-out. Sci Rep 2022; 12:13878. [PMID: 35974033 PMCID: PMC9381582 DOI: 10.1038/s41598-022-18108-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 08/05/2022] [Indexed: 11/21/2022] Open
Abstract
Compound mixtures represent an alternative, additional approach to DNA and synthetic sequence-defined macromolecules in the field of non-conventional molecular data storage, which may be useful depending on the target application. Here, we report a fast and efficient method for information storage in molecular mixtures by the direct use of commercially available chemicals and thus, zero synthetic steps need to be performed. As a proof of principle, a binary coding language is used for encoding words in ASCII or black and white pixels of a bitmap. This way, we stored a 25 × 25-pixel QR code (625 bits) and a picture of the same size. Decoding of the written information is achieved via spectroscopic (1H NMR) or chromatographic (gas chromatography) analysis. In addition, for a faster and automated read-out of the data, we developed a decoding software, which also orders the data sets according to an internal "ordering" standard. Molecular keys or anticounterfeiting are possible areas of application for information-containing compound mixtures.
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Affiliation(s)
- Philipp Bohn
- Laboratory of Applied Chemistry, Institute of Organic Chemistry (IOC), Karlsruhe Institute of Technology (KIT), Straße am Forum 7, 76131, Karlsruhe, Germany
| | - Maximilian P Weisel
- Laboratory of Applied Chemistry, Institute of Organic Chemistry (IOC), Karlsruhe Institute of Technology (KIT), Straße am Forum 7, 76131, Karlsruhe, Germany
| | - Jonas Wolfs
- Laboratory of Applied Chemistry, Institute of Organic Chemistry (IOC), Karlsruhe Institute of Technology (KIT), Straße am Forum 7, 76131, Karlsruhe, Germany
| | - Michael A R Meier
- Laboratory of Applied Chemistry, Institute of Organic Chemistry (IOC), Karlsruhe Institute of Technology (KIT), Straße am Forum 7, 76131, Karlsruhe, Germany.
- Institute of Biological and Chemical Systems - Functional Molecular Systems (IBCS-FMS), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein-Leopoldshafen, Germany.
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13
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Kretschmer J, David T, Dračínský M, Socha O, Jirak D, Vít M, Jurok R, Kuchař M, Císařová I, Polasek M. Paramagnetic encoding of molecules. Nat Commun 2022; 13:3179. [PMID: 35676253 PMCID: PMC9177614 DOI: 10.1038/s41467-022-30811-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Accepted: 05/10/2022] [Indexed: 11/09/2022] Open
Abstract
AbstractContactless digital tags are increasingly penetrating into many areas of human activities. Digitalization of our environment requires an ever growing number of objects to be identified and tracked with machine-readable labels. Molecules offer immense potential to serve for this purpose, but our ability to write, read, and communicate molecular code with current technology remains limited. Here we show that magnetic patterns can be synthetically encoded into stable molecular scaffolds with paramagnetic lanthanide ions to write digital code into molecules and their mixtures. Owing to the directional character of magnetic susceptibility tensors, each sequence of lanthanides built into one molecule produces a unique magnetic outcome. Multiplexing of the encoded molecules provides a high number of codes that grows double-exponentially with the number of available paramagnetic ions. The codes are readable by nuclear magnetic resonance in the radiofrequency (RF) spectrum, analogously to the macroscopic technology of RF identification. A prototype molecular system capable of 16-bit (65,535 codes) encoding is presented. Future optimized systems can conceivably provide 64-bit (~10^19 codes) or higher encoding to cover the labelling needs in drug discovery, anti-counterfeiting and other areas.
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14
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Lou D, Sun Y, Li J, Zheng Y, Zhou Z, Yang J, Pan C, Zheng Z, Chen X, Liu W. Double Lock Label Based on Thermosensitive Polymer Hydrogels for Information Camouflage and Multilevel Encryption. Angew Chem Int Ed Engl 2022; 61:e202117066. [PMID: 35104032 DOI: 10.1002/anie.202117066] [Citation(s) in RCA: 29] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Indexed: 12/13/2022]
Abstract
Developing extra safety encryption technologies to prevent information leakage and combat fakes is in high demand but is challenging. Herein, we propose a "double lock" strategy based on both lower critical solution temperature (LCST) and upper critical solution temperature (UCST) polymer hydrogels for information camouflage and multilevel encryption. Two types of hydrogels were synthesized by the method of random copolymerization. The number of -CO-NH2 groups in the network structure of the hydrogels changed the enthalpic or entropic thermo-responsive hydrogels, and ultimately precisely controlled their phase transition temperature. The crosslink density of the polymer hydrogels governs the diffusion kinetics, resulting in a difference in the time for their color change. The combination of multiple LCST and UCST hydrogels in one label realized information encryption and dynamic information identification in the dimensions of both time and temperature. This work is highly interesting for the fields of information encryption, anti-counterfeiting, and smart responsive materials.
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Affiliation(s)
- Dongyang Lou
- The Key Laboratory of Low-Carbon Chemistry & Energy Conservation of Guangdong Province, Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education, State Key Laboratory of Optoelectronic Materials and Technologies, School of Materials Science and Engineering, Sun Yat-sen University, Guangzhou, 510006, P.R. China
| | - Yujing Sun
- The Key Laboratory of Low-Carbon Chemistry & Energy Conservation of Guangdong Province, Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education, State Key Laboratory of Optoelectronic Materials and Technologies, School of Materials Science and Engineering, Sun Yat-sen University, Guangzhou, 510006, P.R. China
| | - Jian Li
- The Key Laboratory of Low-Carbon Chemistry & Energy Conservation of Guangdong Province, Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education, State Key Laboratory of Optoelectronic Materials and Technologies, School of Materials Science and Engineering, Sun Yat-sen University, Guangzhou, 510006, P.R. China
| | - Yuanyuan Zheng
- The Key Laboratory of Low-Carbon Chemistry & Energy Conservation of Guangdong Province, Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education, State Key Laboratory of Optoelectronic Materials and Technologies, School of Materials Science and Engineering, Sun Yat-sen University, Guangzhou, 510006, P.R. China
| | - Zhipeng Zhou
- Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education, State Key Laboratory of Optoelectronic Materials and Technologies, School of Chemistry, Sun Yat-sen University, Guangzhou, 510006, P.R. China
| | - Jing Yang
- The Key Laboratory of Low-Carbon Chemistry & Energy Conservation of Guangdong Province, Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education, State Key Laboratory of Optoelectronic Materials and Technologies, School of Materials Science and Engineering, Sun Yat-sen University, Guangzhou, 510006, P.R. China
| | - Chuxuan Pan
- The Key Laboratory of Low-Carbon Chemistry & Energy Conservation of Guangdong Province, Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education, State Key Laboratory of Optoelectronic Materials and Technologies, School of Materials Science and Engineering, Sun Yat-sen University, Guangzhou, 510006, P.R. China
| | - Zhikun Zheng
- Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education, State Key Laboratory of Optoelectronic Materials and Technologies, School of Chemistry, Sun Yat-sen University, Guangzhou, 510006, P.R. China
| | - Xudong Chen
- Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education, School of Chemistry, Sun Yat-sen University, Guangzhou, 510006, P.R. China
| | - Wei Liu
- The Key Laboratory of Low-Carbon Chemistry & Energy Conservation of Guangdong Province, Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education, State Key Laboratory of Optoelectronic Materials and Technologies, School of Materials Science and Engineering, Sun Yat-sen University, Guangzhou, 510006, P.R. China
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15
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Shi Q, Miao T, Liu Y, Hu L, Yang H, Shen H, Piao M, Huang Z, Zhang Z. Fabrication and Decryption of a Microarray of Digital Dithiosuccinimide Oligomers. Macromol Rapid Commun 2022; 43:e2200029. [PMID: 35322486 DOI: 10.1002/marc.202200029] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2022] [Revised: 03/11/2022] [Indexed: 11/11/2022]
Abstract
Digital polymer with precisely arranged binary units provides an important option for information storage. This is especially true if the digital polymers are assembled in a device, as it would be of great benefit to data writing and reading in practice. Herein, inspired by DNA microarray technique, the programmable information storing and reading on a mass spectrometry target plate is proposed. First, an array of 4-bit sequence-coded dithiosuccinimide oligomers was efficiently built through sequential thiol-maleimide Michael couplings with good sequence readability by tandem mass spectrometry (MS/MS). Then, toward engineering microarray for information storage, a programmed robotic arm was specifically designed for precisely loading sequence-coded oligomers onto the target plate, and a decoding software was developed for efficient readout of the data from MS/MS sequencing. Notably, short sequence-coded oligomers chains can be used to write long strings of information, and extra error-correction codes are not required as usual due to the inherent concomitant fragmentation signals. Not only text but also bitimages can be automatically stored and decoded with excellent accuracy. This work provides a promising platform of digital polymers for programmable information storing and reading. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Qiunan Shi
- Q. Shi, T. Miao, Y. Liu, Prof. H. Shen, Prof. Z. Huang, College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou, 215123, China
| | - Tengfei Miao
- Q. Shi, T. Miao, Y. Liu, Prof. H. Shen, Prof. Z. Huang, College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou, 215123, China
| | - Yuxin Liu
- Q. Shi, T. Miao, Y. Liu, Prof. H. Shen, Prof. Z. Huang, College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou, 215123, China
| | - Lihua Hu
- Dr. L. Hu, Analysis and Testing Center, Soochow University, Suzhou, 215123, China
| | - Hai Yang
- H. Yang, Eurosmart Intelligent Technology Research Institute, Nanjing, 211106, China
| | - Hang Shen
- Q. Shi, T. Miao, Y. Liu, Prof. H. Shen, Prof. Z. Huang, College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou, 215123, China
| | - Minghao Piao
- Prof. M. Piao, Collaborative Innovation Center of Novel Software Technology and Industrialization, School of Computer Science and Technology, Soochow University, Suzhou, 215123, China
| | - Zhihao Huang
- Q. Shi, T. Miao, Y. Liu, Prof. H. Shen, Prof. Z. Huang, College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou, 215123, China
| | - Zhengbiao Zhang
- Prof. Z. Zhang, College of Chemistry, Chemical Engineering and Materials Science, State Key Laboratory of Radiation Medicine and Protection, Soochow University, Suzhou, 215123, China
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16
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Soete M, De Bruycker K, Du Prez F. Rewritable Macromolecular Data Storage with Automated Read-out. Angew Chem Int Ed Engl 2022; 61:e202116718. [PMID: 35104375 DOI: 10.1002/anie.202116718] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Indexed: 12/22/2022]
Abstract
Rewriting data stored on synthetic macromolecules is an interesting feature, even though it is considered as being quite challenging within the area of digital macromolecules. In this context, we initially studied a strategy for modifying the position tag of sequence-encoded macromolecules in a reversible manner. The efficiency of this method, which relies on the orthogonal cleavage of a thioester moiety via aminolysis, was demonstrated by modifying parts of an exemplary sentence. Simultaneously, a novel algorithm was developed to ease the read-out of macromolecular information by means of MS/MS techniques. This program, Oligoreader, can identify potential information-containing macromolecules from a series of MS1 spectra, analyze the corresponding MS2 spectra, and finally decode the data. Consequently, the algorithm simplifies the entire read-out process by avoiding any interference from the operator, which increases the potential for blind sequencing of uniform macromolecules.
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Affiliation(s)
- Matthieu Soete
- Polymer Chemistry Research group, Centre of Macromolecular Chemistry (CMaC), Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University, Krijgslaan 281 S4-bis, 9000, Ghent, Belgium
| | - Kevin De Bruycker
- Polymer Chemistry Research group, Centre of Macromolecular Chemistry (CMaC), Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University, Krijgslaan 281 S4-bis, 9000, Ghent, Belgium
| | - Filip Du Prez
- Polymer Chemistry Research group, Centre of Macromolecular Chemistry (CMaC), Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University, Krijgslaan 281 S4-bis, 9000, Ghent, Belgium
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17
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Lou D, Sun Y, Li J, Zheng Y, Zhou Z, Yang J, Pan C, Zheng Z, Chen X, Liu W. Double Lock Label Based on Thermosensitive Polymer Hydrogels for Information Camouflage and Multilevel Encryption. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202117066] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Dongyang Lou
- The Key Laboratory of Low-Carbon Chemistry & Energy Conservation of Guangdong Province Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education State Key Laboratory of Optoelectronic Materials and Technologies School of Materials Science and Engineering Sun Yat-sen University Guangzhou 510006 P.R. China
| | - Yujing Sun
- The Key Laboratory of Low-Carbon Chemistry & Energy Conservation of Guangdong Province Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education State Key Laboratory of Optoelectronic Materials and Technologies School of Materials Science and Engineering Sun Yat-sen University Guangzhou 510006 P.R. China
| | - Jian Li
- The Key Laboratory of Low-Carbon Chemistry & Energy Conservation of Guangdong Province Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education State Key Laboratory of Optoelectronic Materials and Technologies School of Materials Science and Engineering Sun Yat-sen University Guangzhou 510006 P.R. China
| | - Yuanyuan Zheng
- The Key Laboratory of Low-Carbon Chemistry & Energy Conservation of Guangdong Province Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education State Key Laboratory of Optoelectronic Materials and Technologies School of Materials Science and Engineering Sun Yat-sen University Guangzhou 510006 P.R. China
| | - Zhipeng Zhou
- Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education State Key Laboratory of Optoelectronic Materials and Technologies School of Chemistry Sun Yat-sen University Guangzhou 510006 P.R. China
| | - Jing Yang
- The Key Laboratory of Low-Carbon Chemistry & Energy Conservation of Guangdong Province Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education State Key Laboratory of Optoelectronic Materials and Technologies School of Materials Science and Engineering Sun Yat-sen University Guangzhou 510006 P.R. China
| | - Chuxuan Pan
- The Key Laboratory of Low-Carbon Chemistry & Energy Conservation of Guangdong Province Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education State Key Laboratory of Optoelectronic Materials and Technologies School of Materials Science and Engineering Sun Yat-sen University Guangzhou 510006 P.R. China
| | - Zhikun Zheng
- Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education State Key Laboratory of Optoelectronic Materials and Technologies School of Chemistry Sun Yat-sen University Guangzhou 510006 P.R. China
| | - Xudong Chen
- Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education School of Chemistry Sun Yat-sen University Guangzhou 510006 P.R. China
| | - Wei Liu
- The Key Laboratory of Low-Carbon Chemistry & Energy Conservation of Guangdong Province Key Laboratory for Polymeric Composite and Functional Materials of Ministry of Education State Key Laboratory of Optoelectronic Materials and Technologies School of Materials Science and Engineering Sun Yat-sen University Guangzhou 510006 P.R. China
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18
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Soete M, De Bruycker K, Du Prez F. Rewritable Macromolecular Data Storage with Automated Read‐out. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202116718] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Matthieu Soete
- Polymer Chemistry Research group Centre of Macromolecular Chemistry (CMaC) Department of Organic and Macromolecular Chemistry Faculty of Sciences Ghent University Krijgslaan 281 S4-bis 9000 Ghent Belgium
| | - Kevin De Bruycker
- Polymer Chemistry Research group Centre of Macromolecular Chemistry (CMaC) Department of Organic and Macromolecular Chemistry Faculty of Sciences Ghent University Krijgslaan 281 S4-bis 9000 Ghent Belgium
| | - Filip Du Prez
- Polymer Chemistry Research group Centre of Macromolecular Chemistry (CMaC) Department of Organic and Macromolecular Chemistry Faculty of Sciences Ghent University Krijgslaan 281 S4-bis 9000 Ghent Belgium
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19
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Meiser LC, Nguyen BH, Chen YJ, Nivala J, Strauss K, Ceze L, Grass RN. Synthetic DNA applications in information technology. Nat Commun 2022; 13:352. [PMID: 35039502 PMCID: PMC8763860 DOI: 10.1038/s41467-021-27846-9] [Citation(s) in RCA: 36] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2021] [Accepted: 12/13/2021] [Indexed: 02/08/2023] Open
Abstract
Synthetic DNA is a growing alternative to electronic-based technologies in fields such as data storage, product tagging, or signal processing. Its value lies in its characteristic attributes, namely Watson-Crick base pairing, array synthesis, sequencing, toehold displacement and polymerase chain reaction (PCR) capabilities. In this review, we provide an overview of the most prevalent applications of synthetic DNA that could shape the future of information technology. We emphasize the reasons why the biomolecule can be a valuable alternative for conventional electronic-based media, and give insights on where the DNA-analog technology stands with respect to its electronic counterparts.
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Affiliation(s)
- Linda C Meiser
- Institute for Chemical and Bioengineering, Department of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 1, CH-8093, Zurich, Switzerland
| | | | | | - Jeff Nivala
- Paul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, WA, 98195, USA
| | | | - Luis Ceze
- Paul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, WA, 98195, USA.
| | - Robert N Grass
- Institute for Chemical and Bioengineering, Department of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 1, CH-8093, Zurich, Switzerland.
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20
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Johnson H, Chambers LC, Holloway JO, Bousgas A, Akhtar-Khavari A, Blinco J, Barner-Kowollik C. Using precision polymer chemistry for plastics traceability and governance. Polym Chem 2022. [DOI: 10.1039/d2py01180h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Resolving the anonymity of plastic materials is critical for safeguarding the well-being of our natural environments and human health.
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Affiliation(s)
- Hope Johnson
- School of Law, Faculty of Business and Law, Centre for a Waste Free World, Queensland University of Technology (QUT), 2 George Street, Brisbane, QLD 4000, Australia
| | - Lewis C. Chambers
- School of Chemistry and Physics, Centre for Materials Science, Centre for a Waste Free World, Queensland University of Technology (QUT), 2 George Street, Brisbane, QLD 4000, Australia
| | - Joshua O. Holloway
- School of Chemistry and Physics, Centre for Materials Science, Centre for a Waste Free World, Queensland University of Technology (QUT), 2 George Street, Brisbane, QLD 4000, Australia
| | - Annastasia Bousgas
- School of Law, Faculty of Business and Law, Centre for a Waste Free World, Queensland University of Technology (QUT), 2 George Street, Brisbane, QLD 4000, Australia
| | - Afshin Akhtar-Khavari
- School of Law, Faculty of Business and Law, Centre for a Waste Free World, Queensland University of Technology (QUT), 2 George Street, Brisbane, QLD 4000, Australia
| | - James Blinco
- School of Chemistry and Physics, Centre for Materials Science, Centre for a Waste Free World, Queensland University of Technology (QUT), 2 George Street, Brisbane, QLD 4000, Australia
| | - Christopher Barner-Kowollik
- School of Chemistry and Physics, Centre for Materials Science, Centre for a Waste Free World, Queensland University of Technology (QUT), 2 George Street, Brisbane, QLD 4000, Australia
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21
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Soete M, Van Hoorde J, Du Prez F. Discrete, self-immolative N-substituted oligourethanes and their use as molecular tags. Polym Chem 2022. [DOI: 10.1039/d2py00630h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The depolymerization of N-substituted oligourethanes via an intramolecular cyclization event was studied in-depth, while the applicability of these macromolecules as anti-counterfeiting tags was demonstrated by labeling a polyurethane material.
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Affiliation(s)
- Matthieu Soete
- Polymer Chemistry Research group, Centre of Macromolecular Chemistry (CMaC), Department of Organic and Macromolecular Chemistry, Faculty of sciences, Ghent University, Krijgslaan 281 S4, 9000 Ghent, Belgium
| | - Jens Van Hoorde
- Polymer Chemistry Research group, Centre of Macromolecular Chemistry (CMaC), Department of Organic and Macromolecular Chemistry, Faculty of sciences, Ghent University, Krijgslaan 281 S4, 9000 Ghent, Belgium
| | - Filip Du Prez
- Polymer Chemistry Research group, Centre of Macromolecular Chemistry (CMaC), Department of Organic and Macromolecular Chemistry, Faculty of sciences, Ghent University, Krijgslaan 281 S4, 9000 Ghent, Belgium
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22
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Leguizamon SC, Scott TF. Mimicking DNA Functions with Abiotic, Sequence-Defined Polymers. POLYM REV 2021. [DOI: 10.1080/15583724.2021.2014519] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Samuel C. Leguizamon
- Department of Chemical Engineering, University of Michigan, Ann Arbor, Michigan, USA
| | - Timothy F. Scott
- Department of Chemical Engineering, Monash University, Clayton, VIC, Australia
- Department of Materials Science and Engineering, Monash University, Clayton, VIC, Australia
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23
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Ishaqat A, Herrmann A. Polymers Strive for Accuracy: From Sequence-Defined Polymers to mRNA Vaccines against COVID-19 and Polymers in Nucleic Acid Therapeutics. J Am Chem Soc 2021; 143:20529-20545. [PMID: 34841867 DOI: 10.1021/jacs.1c08484] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Unquestionably, polymers have influenced the world over the past 100 years. They are now more crucial than ever since the COVID-19 pandemic outbreak. The pandemic paved the way for certain polymers to be in the spotlight, namely sequence-defined polymers such as messenger ribonucleic acid (mRNA), which was the first type of vaccine to be authorized in the U.S. and Europe to protect against the SARS-CoV-2 virus. This rise of mRNA will probably influence scientific research concerning nucleic acids in general and RNA therapeutics in specific. In this Perspective, we highlight the recent trends in sequence-controlled and sequence-defined polymers. Then we discuss mRNA vaccines as an example to illustrate the need of ultimate sequence control to achieve complex functions such as specific activation of the immune system. We briefly present how mRNA vaccines are produced, the importance of modified nucleotides, the characteristic features, and the advantages and challenges associated with this class of vaccines. Finally, we discuss the chances and opportunities for polymer chemistry to provide solutions and contribute to the future progress of RNA-based therapeutics. We highlight two particular roles of polymers in this context. One represents conjugation of polymers to nucleic acids to form biohybrids. The other is concerned with advanced polymer-based carrier systems for nucleic acids. We believe that polymers can help to address present problems of RNA-based therapeutic technologies and impact the field beyond the COVID-19 pandemic.
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Affiliation(s)
- Aman Ishaqat
- DWI - Leibniz Institute for Interactive Materials, Forckenbeckstraße 50, 52074 Aachen, Germany.,Institute of Technical and Macromolecular Chemistry, RWTH Aachen University, Worringerweg 2, 52074 Aachen, Germany
| | - Andreas Herrmann
- DWI - Leibniz Institute for Interactive Materials, Forckenbeckstraße 50, 52074 Aachen, Germany.,Institute of Technical and Macromolecular Chemistry, RWTH Aachen University, Worringerweg 2, 52074 Aachen, Germany
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24
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Yang Y, Yu K, Liu S, Yan J, Lai H, Xing F, Xiao P. Radical Ring-Opening Single Unit Monomer Insertion: An Approach to Degradable and Biocompatible Sequence-Defined Oligomers. Macromolecules 2021. [DOI: 10.1021/acs.macromol.1c01991] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yili Yang
- Department of Immunobiology, College of Life Science and Technology, Jinan University, #601 Huangpu West Avenue, Guangzhou 510632, China
| | - Keman Yu
- Department of Immunobiology, College of Life Science and Technology, Jinan University, #601 Huangpu West Avenue, Guangzhou 510632, China
| | - Shan Liu
- Department of Immunobiology, College of Life Science and Technology, Jinan University, #601 Huangpu West Avenue, Guangzhou 510632, China
| | - Jieyu Yan
- Department of Immunobiology, College of Life Science and Technology, Jinan University, #601 Huangpu West Avenue, Guangzhou 510632, China
| | - Haiwang Lai
- Department of Immunobiology, College of Life Science and Technology, Jinan University, #601 Huangpu West Avenue, Guangzhou 510632, China
| | - Feiyue Xing
- Department of Immunobiology, College of Life Science and Technology, Jinan University, #601 Huangpu West Avenue, Guangzhou 510632, China
- MOE Key Laboratory of Tumor Molecular Biology, Jinan University, Guangzhou 510632, China
| | - Pu Xiao
- Research School of Chemistry, The Australian National University, Canberra, ACT 2601, Australia
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25
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Kaya K, Jockusch S, Yagci Y. Mussel-Inspired Coatings by Photoinduced Electron-Transfer Reactions: Photopolymerization of Dopamine under UV, Visible, and Daylight under Oxygen-Free Conditions. Macromolecules 2021. [DOI: 10.1021/acs.macromol.1c00946] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Kerem Kaya
- Department of Chemistry, Istanbul Technical University, Maslak, Istanbul 34469, Turkey
| | - Steffen Jockusch
- Department of Chemistry, Columbia University, 3000 Broadway, New York, New York 10027, United States
| | - Yusuf Yagci
- Department of Chemistry, Istanbul Technical University, Maslak, Istanbul 34469, Turkey
- Centre of Excellence for Advanced Materials Research (CEAMR) and Chemistry Dept., Faculty of Science, King Abdulaziz University, P.O. Box 80203, Jeddah 21589, Saudi Arabia
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26
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Loth C, Charles L, Lutz JF, Nerantzaki M. Precisely Defined Aptamer- b-Poly(phosphodiester) Conjugates Prepared by Phosphoramidite Polymer Chemistry. ACS Macro Lett 2021; 10:481-485. [PMID: 35549221 DOI: 10.1021/acsmacrolett.1c00164] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Uniform conjugates combining a DNA aptamer (either anti-MUC1 or ATP aptamer) and a synthetic polymer segment were synthesized by automated phosphoramidite chemistry. This multistep growth polymer chemistry enables the use of both natural (i.e., nucleoside phosphoramidites) and non-natural monomers (e.g., alkyl- and oligo(ethylene glycol)-phosphoramidites). Thus, in the present work, six different aptamer-polymer conjugates were synthesized and characterized by ion-exchange HPLC, circular dichroism spectroscopy, and electrospray mass spectrometry. All these methods evidenced the formation of uniform molecules with precisely controlled chain-length and monomer sequences. Furthermore, aptamer folding was not affected by polymer bioconjugation. The method described herein is straightforward and allows covalent attachment of homopolymers and copolymers to biofunctional DNA aptamers.
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Affiliation(s)
- Capucine Loth
- Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, 23 rue du Loess, 67034 Strasbourg Cedex 2, France
| | - Laurence Charles
- Aix Marseille Université, CNRS, UMR 7273, Institute of Radical Chemistry, 13397, Marseille Cedex 20, France
| | - Jean-François Lutz
- Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, 23 rue du Loess, 67034 Strasbourg Cedex 2, France
| | - Maria Nerantzaki
- Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, 23 rue du Loess, 67034 Strasbourg Cedex 2, France
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27
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Abstract
In biological systems, the storage and transfer of genetic information rely on sequence-controlled nucleic acids such as DNA and RNA. It has been realized for quite some time that this property is not only crucial for life but could also be very useful in human applications. For instance, DNA has been actively investigated as a digital storage medium over the past decade. Indeed, the "hard-disk of life" is an obvious choice and a highly optimized material for storing data. Through decades of nucleic acids research, technological tools for parallel synthesis and sequencing of DNA have been readily available. Consequently, it has already been demonstrated that different types of documents (e.g., texts, images, videos, and industrial data) can be stored in chemically synthesized DNA libraries. However, DNA is subject to biological constraints, and its molecular structure cannot be easily varied to match technological needs. In fact, DNA is not the only macromolecule that enables data storage. In recent years, it has been demonstrated that a wide variety of synthetic polymers can also be used for such a purpose. Indeed, modern polymer synthesis allows the preparation of synthetic macromolecules with precisely controlled monomer sequences. Altogether, about a dozens of synthetic digital polymers have already been described, and many more can be foreseen. Among them, sequence-defined poly(phosphodiester)s are one of the most promising options. These polymers are prepared by stepwise phosphoramidite chemistry like chemically synthesized oligonucleotides. However, they are constructed with non-natural building blocks and therefore share almost no structural characteristics with nucleic acids, except phosphate repeat units. Still, they contain readable digital messages that can be deciphered by nanopore sequencing or mass spectrometry sequencing. In this Account, we describe our recent research efforts in synthesizing and sequencing optimal abiological digital poly(phosphodiester)s. A major advantage of these polymers over DNA is that their molecular structure can easily be varied to tune their properties. During the last 5 years, we have engineered the molecular structure of these polymers to adjust crucial parameters such as the storage density, storage capacity, erasability, and readability. Consequently, high-capacity PPDE chains, containing hundreds of bits per chains, can now be synthesized and efficiently sequenced using a routine mass spectrometer. Furthermore, sequencing data can be automatically decrypted with the help of decoding software. This new type of coded matter can also be edited using practical physical triggers such as light and organized in space by programmed self-assembly. All of these recent improvements are summarized and discussed herein.
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Affiliation(s)
- Laurence Charles
- Aix Marseille Université, CNRS, Institute for Radical Chemistry, UMR 7273, 23 Av Escadrille Nomandie-Niemen, 13397 Marseille Cedex 20, France
| | - Jean-François Lutz
- Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, 23 rue du Loess, 67034 Strasbourg Cedex 2, France
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28
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Fadler RE, Al Ouahabi A, Qiao B, Carta V, König NF, Gao X, Zhao W, Zhang Y, Lutz JF, Flood AH. Chain Entropy Beats Hydrogen Bonds to Unfold and Thread Dialcohol Phosphates inside Cyanostar Macrocycles To Form [3]Pseudorotaxanes. J Org Chem 2021; 86:4532-4546. [PMID: 33636075 PMCID: PMC8063573 DOI: 10.1021/acs.joc.0c02887] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The recognition of substituted phosphates underpins many processes including DNA binding, enantioselective catalysis, and recently template-directed rotaxane synthesis. Beyond ATP and a few commercial substrates, however, little is known about how substituents effect organophosphate recognition. Here, we examined alcohol substituents and their impact on recognition by cyanostar macrocycles. The organophosphates were disubstituted by alcohols of various chain lengths, dipropanol, dihexanol, and didecanol phosphate, each accessed using modular solid-phases syntheses. Based on the known size-selective binding of phosphates by π-stacked dimers of cyanostars, threaded [3]pseudorotaxanes were anticipated. While seen with butyl substituents, pseudorotaxane formation was disrupted by competitive OH···O- hydrogen bonding between both terminal hydroxyls and the anionic phosphate unit. Crystallography also showed formation of a backfolded propanol conformation resulting in an 8-membered ring and a perched cyanostar assembly. Motivated by established entropic penalties accompanying ring formation, we reinstated [3]pseudorotaxanes by extending the size of the substituent to hexanol and decanol. Chain entropy overcomes the enthalpically favored OH···O- contacts to favor random-coil conformations required for seamless, high-fidelity threading of dihexanol and didecanol phosphates inside cyanostars. These studies highlight how chain length and functional groups on phosphate's substituents can be powerful design tools to regulate binding and control assembly formation during phosphate recognition.
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Affiliation(s)
- Rachel E Fadler
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| | - Abdelaziz Al Ouahabi
- Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, Strasbourg, 67034, France
| | - Bo Qiao
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| | - Veronica Carta
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| | - Niklas F König
- Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, Strasbourg, 67034, France
| | - Xinfeng Gao
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| | - Wei Zhao
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| | - Yankai Zhang
- Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, Strasbourg, 67034, France
| | - Jean-François Lutz
- Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, Strasbourg, 67034, France
| | - Amar H Flood
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
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29
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Mondal T, Nerantzaki M, Flesch K, Loth C, Maaloum M, Cong Y, Sheiko SS, Lutz JF. Large Sequence-Defined Supramolecules Obtained by the DNA-Guided Assembly of Biohybrid Poly(phosphodiester)s. Macromolecules 2021. [DOI: 10.1021/acs.macromol.0c02581] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Tathagata Mondal
- Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, 23 rue du Loess, 67034 Strasbourg Cedex 2, France
| | - Maria Nerantzaki
- Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, 23 rue du Loess, 67034 Strasbourg Cedex 2, France
| | - Kevin Flesch
- Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, 23 rue du Loess, 67034 Strasbourg Cedex 2, France
| | - Capucine Loth
- Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, 23 rue du Loess, 67034 Strasbourg Cedex 2, France
| | - Mounir Maaloum
- Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, 23 rue du Loess, 67034 Strasbourg Cedex 2, France
| | - Yidan Cong
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3290, United States
| | - Sergei S. Sheiko
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3290, United States
| | - Jean-François Lutz
- Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, 23 rue du Loess, 67034 Strasbourg Cedex 2, France
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30
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Arcadia CE, Dombroski A, Oakley K, Chen SL, Tann H, Rose C, Kim E, Reda S, Rubenstein BM, Rosenstein JK. Leveraging autocatalytic reactions for chemical domain image classification. Chem Sci 2021; 12:5464-5472. [PMID: 34163768 PMCID: PMC8179570 DOI: 10.1039/d0sc05860b] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2020] [Accepted: 03/02/2021] [Indexed: 01/04/2023] Open
Abstract
Autocatalysis is fundamental to many biological processes, and kinetic models of autocatalytic reactions have mathematical forms similar to activation functions used in artificial neural networks. Inspired by these similarities, we use an autocatalytic reaction, the copper-catalyzed azide-alkyne cycloaddition, to perform digital image recognition tasks. Images are encoded in the concentration of a catalyst across an array of liquid samples, and the classification is performed with a sequence of automated fluid transfers. The outputs of the operations are monitored using UV-vis spectroscopy. The growing interest in molecular information storage suggests that methods for computing in chemistry will become increasingly important for querying and manipulating molecular memory.
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Affiliation(s)
| | | | - Kady Oakley
- Department of Chemistry, Brown University Providence RI USA
| | - Shui Ling Chen
- Department of Chemistry, Brown University Providence RI USA
| | - Hokchhay Tann
- School of Engineering, Brown University Providence RI USA
| | | | - Eunsuk Kim
- Department of Chemistry, Brown University Providence RI USA
| | - Sherief Reda
- School of Engineering, Brown University Providence RI USA
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31
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Aksakal R, Mertens C, Soete M, Badi N, Du Prez F. Applications of Discrete Synthetic Macromolecules in Life and Materials Science: Recent and Future Trends. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2021; 8:2004038. [PMID: 33747749 PMCID: PMC7967060 DOI: 10.1002/advs.202004038] [Citation(s) in RCA: 57] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Revised: 11/22/2020] [Indexed: 05/19/2023]
Abstract
In the last decade, the field of sequence-defined polymers and related ultraprecise, monodisperse synthetic macromolecules has grown exponentially. In the early stage, mainly articles or reviews dedicated to the development of synthetic routes toward their preparation have been published. Nowadays, those synthetic methodologies, combined with the elucidation of the structure-property relationships, allow envisioning many promising applications. Consequently, in the past 3 years, application-oriented papers based on discrete synthetic macromolecules emerged. Hence, material science applications such as macromolecular data storage and encryption, self-assembly of discrete structures and foldamers have been the object of many fascinating studies. Moreover, in the area of life sciences, such structures have also been the focus of numerous research studies. Here, it is aimed to highlight these recent applications and to give the reader a critical overview of the future trends in this area of research.
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Affiliation(s)
- Resat Aksakal
- Polymer Chemistry Research GroupCentre of Macromolecular Chemistry (CMaC)Department of Organic and Macromolecular ChemistryGhent UniversityKrijgslaan 281 S4‐bisGhentB‐9000Belgium
| | - Chiel Mertens
- Polymer Chemistry Research GroupCentre of Macromolecular Chemistry (CMaC)Department of Organic and Macromolecular ChemistryGhent UniversityKrijgslaan 281 S4‐bisGhentB‐9000Belgium
| | - Matthieu Soete
- Polymer Chemistry Research GroupCentre of Macromolecular Chemistry (CMaC)Department of Organic and Macromolecular ChemistryGhent UniversityKrijgslaan 281 S4‐bisGhentB‐9000Belgium
| | - Nezha Badi
- Polymer Chemistry Research GroupCentre of Macromolecular Chemistry (CMaC)Department of Organic and Macromolecular ChemistryGhent UniversityKrijgslaan 281 S4‐bisGhentB‐9000Belgium
| | - Filip Du Prez
- Polymer Chemistry Research GroupCentre of Macromolecular Chemistry (CMaC)Department of Organic and Macromolecular ChemistryGhent UniversityKrijgslaan 281 S4‐bisGhentB‐9000Belgium
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32
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Yang C, Wu KB, Deng Y, Yuan J, Niu J. Geared Toward Applications: A Perspective on Functional Sequence-Controlled Polymers. ACS Macro Lett 2021; 10:243-257. [PMID: 34336395 PMCID: PMC8320758 DOI: 10.1021/acsmacrolett.0c00855] [Citation(s) in RCA: 42] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Sequence-controlled polymers are an emerging class of synthetic polymers with a regulated sequence of monomers. In the past decade, tremendous progress has been made in the synthesis of polymers with the sophisticated sequence control approaching the level manifested in biopolymers. In contrast, the exploration of novel functions that can be achieved by controlling synthetic polymer sequences represents an emerging focus in polymer science. This Viewpoint will survey recent advances in the functional applications of sequence-controlled polymers and provide a perspective on the challenges and outlook for pursuing future applications of this fascinating class of macromolecules.
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Affiliation(s)
- Cangjie Yang
- Department of Chemistry, Boston College, Chestnut Hill, Massachusetts 02467, United States
| | - Kevin B. Wu
- Department of Chemistry, Boston College, Chestnut Hill, Massachusetts 02467, United States
| | - Yu Deng
- Department of Chemistry, Boston College, Chestnut Hill, Massachusetts 02467, United States
| | - Jingsong Yuan
- Department of Chemistry, Boston College, Chestnut Hill, Massachusetts 02467, United States
| | - Jia Niu
- Department of Chemistry, Boston College, Chestnut Hill, Massachusetts 02467, United States
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33
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Mondal T, Charles L, Lutz J. Damage and Repair in Informational Poly(
N
‐substituted urethane)s. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202008864] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Tathagata Mondal
- Precision Macromolecular Chemistry Université de Strasbourg CNRS Institut Charles Sadron UPR22 23 rue du Loess 67034 Strasbourg Cedex 2 France
| | - Laurence Charles
- Aix Marseille Université CNRS UMR 7273, Institut of Radical Chemistry 13397 Marseille Cedex 20 France
| | - Jean‐François Lutz
- Precision Macromolecular Chemistry Université de Strasbourg CNRS Institut Charles Sadron UPR22 23 rue du Loess 67034 Strasbourg Cedex 2 France
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34
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Mondal T, Charles L, Lutz JF. Damage and Repair in Informational Poly(N-substituted urethane)s. Angew Chem Int Ed Engl 2020; 59:20390-20393. [PMID: 32779792 DOI: 10.1002/anie.202008864] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Revised: 07/23/2020] [Indexed: 11/07/2022]
Abstract
The degradation and repair of uniform sequence-defined poly(N-substituted urethane)s was studied. Polymers containing an ω-OH end-group and only ethyl carbamate main-chain repeat units rapidly degrade in NaOH solution through an ω→α depolymerization mechanism with no apparent sign of random chain cleavage. The degradation mechanism is not notably affected by the nature of the side-chain N-substituents and took place for all studied sequences. On the other hand, depolymerization is significantly influenced by the molecular structure of the main-chain repeat units. For instance, hexyl carbamate main-chain motifs block unzipping and can therefore be used to control the degradation of specific sequence sections. Interestingly, the partially degraded polymers can also be repaired; for example by using a combination of N,N'-disuccinimidyl carbonate with a secondary amine building-block. Overall, these findings open up interesting new avenues for chain-healing and sequence editing.
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Affiliation(s)
- Tathagata Mondal
- Precision Macromolecular Chemistry, Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, 23 rue du Loess, 67034, Strasbourg Cedex 2, France
| | - Laurence Charles
- Aix Marseille Université, CNRS, UMR 7273, Institut of Radical Chemistry, 13397, Marseille Cedex 20, France
| | - Jean-François Lutz
- Precision Macromolecular Chemistry, Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, 23 rue du Loess, 67034, Strasbourg Cedex 2, France
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35
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Construction methodologies and sequence-oriented properties of sequence-controlled oligomers/polymers generated via radical polymerization. Polym J 2020. [DOI: 10.1038/s41428-020-00405-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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36
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Cavallo G, Clément JL, Gigmes D, Charles L, Lutz JF. Selective Bond Cleavage in Informational Poly(Alkoxyamine Phosphodiester)s. Macromol Rapid Commun 2020; 41:e2000215. [PMID: 32449253 DOI: 10.1002/marc.202000215] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Revised: 05/05/2020] [Indexed: 12/29/2022]
Abstract
The collision-induced dissociation (CID) of sequence-defined poly(alkoxyamine phosphodiester)s is studied by electrospray ionization mass spectrometry. These informational polymers are synthesized using three different nitroxide building blocks, namely proxyl-, SG1-, and TEMPO-derivatives. For a polymer containing TEMPO- and SG1-based main chain alkoxyamines, it is found that both types of alkoxyamines break in CID tandem mass spectrometry (MS/MS). However, SG1-sites are preferentially cleaved and this predominance can be increased by reducing collision energy, even though selective bond fragmentation is not observed. On the other hand, for a polymer containing proxyl- and SG1-alkoxyamines, selective bond cleavage is observed at all studied collision energies. The SG1-alkoxyamines can be first cleaved in MS/MS conditions and secondly the proxyl-alkoxyamines in pseudo-MS3 conditions. These results open up interesting new avenues for the design of readable, erasable or programmable informational polymers.
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Affiliation(s)
- Gianni Cavallo
- Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, 23 rue du Loess, Strasbourg Cedex 2, 67034, France
| | - Jean-Louis Clément
- Aix Marseille Université, CNRS, UMR 7273, Institute of Radical Chemistry, Marseille, Cedex 20 13397, France
| | - Didier Gigmes
- Aix Marseille Université, CNRS, UMR 7273, Institute of Radical Chemistry, Marseille, Cedex 20 13397, France
| | - Laurence Charles
- Aix Marseille Université, CNRS, UMR 7273, Institute of Radical Chemistry, Marseille, Cedex 20 13397, France
| | - Jean-François Lutz
- Université de Strasbourg, CNRS, Institut Charles Sadron UPR22, 23 rue du Loess, Strasbourg Cedex 2, 67034, France
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37
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Laurent E, Amalian JA, Parmentier M, Oswald L, Al Ouahabi A, Dufour F, Launay K, Clément JL, Gigmes D, Delsuc MA, Charles L, Lutz JF. High-Capacity Digital Polymers: Storing Images in Single Molecules. Macromolecules 2020. [DOI: 10.1021/acs.macromol.0c00666] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Eline Laurent
- CNRS, Institut Charles Sadron UPR22, Université de Strasbourg, 23 rue du Loess, 67034 Cedex 2 Strasbourg, France
| | - Jean-Arthur Amalian
- CNRS, UMR 7273, Institute of Radical Chemistry, Aix Marseille Université, 13397 Cedex 20 Marseille, France
| | - Marie Parmentier
- CNRS, Institut Charles Sadron UPR22, Université de Strasbourg, 23 rue du Loess, 67034 Cedex 2 Strasbourg, France
| | - Laurence Oswald
- CNRS, Institut Charles Sadron UPR22, Université de Strasbourg, 23 rue du Loess, 67034 Cedex 2 Strasbourg, France
| | - Abdelaziz Al Ouahabi
- CNRS, Institut Charles Sadron UPR22, Université de Strasbourg, 23 rue du Loess, 67034 Cedex 2 Strasbourg, France
| | - Florent Dufour
- CNRS, Institut Charles Sadron UPR22, Université de Strasbourg, 23 rue du Loess, 67034 Cedex 2 Strasbourg, France
| | - Kevin Launay
- CNRS, UMR 7273, Institute of Radical Chemistry, Aix Marseille Université, 13397 Cedex 20 Marseille, France
| | - Jean-Louis Clément
- CNRS, UMR 7273, Institute of Radical Chemistry, Aix Marseille Université, 13397 Cedex 20 Marseille, France
| | - Didier Gigmes
- CNRS, UMR 7273, Institute of Radical Chemistry, Aix Marseille Université, 13397 Cedex 20 Marseille, France
| | - Marc-André Delsuc
- Institut de Génétique et de Biologie Moléculaire et Cellulaire, INSERM, U596, CNRS, UMR7104, Université de Strasbourg, 1 rue Laurent Fries, 67404 Illkirch-Graffenstaden, France
| | - Laurence Charles
- CNRS, UMR 7273, Institute of Radical Chemistry, Aix Marseille Université, 13397 Cedex 20 Marseille, France
| | - Jean-François Lutz
- CNRS, Institut Charles Sadron UPR22, Université de Strasbourg, 23 rue du Loess, 67034 Cedex 2 Strasbourg, France
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38
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Holloway JO, Van Lijsebetten F, Badi N, Houck HA, Du Prez FE. From Sequence-Defined Macromolecules to Macromolecular Pin Codes. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2020; 7:1903698. [PMID: 32328435 PMCID: PMC7175230 DOI: 10.1002/advs.201903698] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2019] [Revised: 02/10/2020] [Indexed: 05/23/2023]
Abstract
Dynamic sequence-defined oligomers carrying a chemically written pin code are obtained through a strategy combining multicomponent reactions with the thermoreversible addition of 1,2,4-triazoline-3,5-diones (TADs) to indole substrates. The precision oligomers are specifically designed to be encrypted upon heating as a result of the random reshuffling of the TAD-indole covalent bonds within the backbone, thereby resulting in the scrambling of the encoded information. The encrypted pin code can eventually be decrypted following a second heating step that enables the macromolecular pin code to be deciphered using 1D electrospray ionization-mass spectrometry (ESI-MS). The herein introduced concept of encryption/decryption represents a key advancement compared with current strategies that typically use uncontrolled degradation to erase and tandem mass spectrometry (MS/MS) to analyze, decipher, and read-out chemically encrypted information. Additionally, the synthesized macromolecules are coated onto a high-value polymer material, which demonstrates their potential application as coded product tags for anti-counterfeiting purposes.
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Affiliation(s)
- Joshua O. Holloway
- Polymer Chemistry Research group (PCR)Centre of Macromolecular Chemistry (CMaC)Department of Organic and Macromolecular ChemistryFaculty of SciencesGhent UniversityKrijgslaan 281‐S4bisGhent9000Belgium
| | - Filip Van Lijsebetten
- Polymer Chemistry Research group (PCR)Centre of Macromolecular Chemistry (CMaC)Department of Organic and Macromolecular ChemistryFaculty of SciencesGhent UniversityKrijgslaan 281‐S4bisGhent9000Belgium
| | - Nezha Badi
- Polymer Chemistry Research group (PCR)Centre of Macromolecular Chemistry (CMaC)Department of Organic and Macromolecular ChemistryFaculty of SciencesGhent UniversityKrijgslaan 281‐S4bisGhent9000Belgium
| | - Hannes A. Houck
- Polymer Chemistry Research group (PCR)Centre of Macromolecular Chemistry (CMaC)Department of Organic and Macromolecular ChemistryFaculty of SciencesGhent UniversityKrijgslaan 281‐S4bisGhent9000Belgium
| | - Filip E. Du Prez
- Polymer Chemistry Research group (PCR)Centre of Macromolecular Chemistry (CMaC)Department of Organic and Macromolecular ChemistryFaculty of SciencesGhent UniversityKrijgslaan 281‐S4bisGhent9000Belgium
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39
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Lutz JF. 100th Anniversary of Macromolecular Science Viewpoint: Toward Artificial Life-Supporting Macromolecules. ACS Macro Lett 2020; 9:185-189. [PMID: 35638671 DOI: 10.1021/acsmacrolett.9b00938] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Terrestrial Life is based on polymers. In all known living organisms, DNA stores genetic information, mutates, self-replicates, and guides the synthesis of messenger molecules. Although the function of nucleic acids is well-understood, the development of artificial macromolecular mimics remains very limited. Laboratory-synthesized nucleic acids still support Life, and some nucleic acids analogues exhibit biological functions. Yet, after hundred years of polymer science, no other type of Life-supporting macromolecule (i.e., non-nucleic acids) has ever been reported. In this context, the aim of the present viewpoint is to discuss important challenges that shall be addressed by polymer chemists to achieve artificial Life. Similarly to DNA, an artificial Life-supporting macromolecule shall store information, transfer information, and mutate. Many tools, such as sequence-defined polymer synthesis, polymer modification, supramolecular polymer chemistry, and dynamic chemistry, are already available to chemists to attain these properties. However, the design of artificial Life-supporting macromolecules is hindered by two main factors. First, the chemical search space is enormous, and it is difficult to predict promising structures, even with the help of combinatorial and chemoinformatic tools. Second, rational design is probably a limited approach to achieve macromolecules that shall be involved in nonequilibrium metabolic systems. Hence, a synergic combination of classical polymer chemistry with the more recent field of systems chemistry is probably the key toward the emergence of artificial Life-supporting macromolecules.
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Affiliation(s)
- Jean-François Lutz
- Université de Strasbourg, CNRS - UPR 22, Institut Charles Sadron, 23 rue du Loess, 67034 Strasbourg, France
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40
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Nagy L, Kuki Á, Nagy T, Vadkerti B, Erdélyi Z, Kárpáti L, Zsuga M, Kéki S. Encoding Information into Polyethylene Glycol Using an Alcohol-Isocyanate "Click" Reaction. Int J Mol Sci 2020; 21:ijms21041318. [PMID: 32075293 PMCID: PMC7072859 DOI: 10.3390/ijms21041318] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2020] [Revised: 02/07/2020] [Accepted: 02/12/2020] [Indexed: 11/29/2022] Open
Abstract
In this article, the capability of encoding information using a homologous series of monodisperse monomethoxypolyethylene glycols (mPEG), with a number of ethylene oxide units ranging from nEO = 5 to 8, and monodisperse linear aliphatic isocyanates containing a number of CH2 units from 3 to 7, is demonstrated. The “click” reaction of the two corresponding homologous series yielded 20 different isocyanate end-capped polyethylene glycol derivatives (mPEG-OCONHR) whose sodiated adduct ion’s nominal m/z values spanned from 360 to 548, providing an average ca. 8 m/z unit for the storage of one-bit information. These mPEG-OCONHR oligomers were then used to encode information in binary sequences using a 384-well MALDI sample plate and employing the common dried-droplet sample preparation method capable of encoding 20 bit, i.e., 2.5 byte information in one spot, was employed. The information stored in the spots was read by MALDI-TOF MS using the m/z value of the corresponding mPEG-OCONHR oligomers. The capability of the method to store data was demonstrated by writing and reading a text file, visualizing a small picture and capturing a short audio file written in Musical Instrument Digital Interface (MIDI) sequence. Due to the very large similarities in the chemical structures of the encoding oligomers and their “easy to be ionized” property, as well as their very similar ionization efficiencies, the MALDI-TOF MS signal intensities from each compound was so strong and unambiguous that complete decoding could be performed in each case. In addition, the set of the proposed encoding oligomers can be further extended to attain higher bit “densities”.
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Affiliation(s)
- Lajos Nagy
- Department of Applied Chemistry, Faculty of Science and Technology, University of Debrecen, H-4032 Debrecen, Hungary; (L.N.); (Á.K.); (T.N.); (B.V.); (M.Z.)
| | - Ákos Kuki
- Department of Applied Chemistry, Faculty of Science and Technology, University of Debrecen, H-4032 Debrecen, Hungary; (L.N.); (Á.K.); (T.N.); (B.V.); (M.Z.)
| | - Tibor Nagy
- Department of Applied Chemistry, Faculty of Science and Technology, University of Debrecen, H-4032 Debrecen, Hungary; (L.N.); (Á.K.); (T.N.); (B.V.); (M.Z.)
| | - Bence Vadkerti
- Department of Applied Chemistry, Faculty of Science and Technology, University of Debrecen, H-4032 Debrecen, Hungary; (L.N.); (Á.K.); (T.N.); (B.V.); (M.Z.)
- Doctoral School of Chemistry, University of Debrecen, H-4032 Debrecen, Hungary
| | - Zoltán Erdélyi
- Department of Solid State Physics, Faculty of Science and Technology, University of Debrecen, H-4002 Debrecen, Hungary;
| | - Levente Kárpáti
- Department of Organic Chemistry, Faculty of Pharmacy, Semmelweis University, H-1092 Budapest, Hungary;
| | - Miklós Zsuga
- Department of Applied Chemistry, Faculty of Science and Technology, University of Debrecen, H-4032 Debrecen, Hungary; (L.N.); (Á.K.); (T.N.); (B.V.); (M.Z.)
| | - Sándor Kéki
- Department of Applied Chemistry, Faculty of Science and Technology, University of Debrecen, H-4032 Debrecen, Hungary; (L.N.); (Á.K.); (T.N.); (B.V.); (M.Z.)
- Correspondence:
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Arcadia CE, Kennedy E, Geiser J, Dombroski A, Oakley K, Chen SL, Sprague L, Ozmen M, Sello J, Weber PM, Reda S, Rose C, Kim E, Rubenstein BM, Rosenstein JK. Multicomponent molecular memory. Nat Commun 2020; 11:691. [PMID: 32019933 PMCID: PMC7000828 DOI: 10.1038/s41467-020-14455-1] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2019] [Accepted: 01/08/2020] [Indexed: 11/25/2022] Open
Abstract
Multicomponent reactions enable the synthesis of large molecular libraries from relatively few inputs. This scalability has led to the broad adoption of these reactions by the pharmaceutical industry. Here, we employ the four-component Ugi reaction to demonstrate that multicomponent reactions can provide a basis for large-scale molecular data storage. Using this combinatorial chemistry we encode more than 1.8 million bits of art historical images, including a Cubist drawing by Picasso. Digital data is written using robotically synthesized libraries of Ugi products, and the files are read back using mass spectrometry. We combine sparse mixture mapping with supervised learning to achieve bit error rates as low as 0.11% for single reads, without library purification. In addition to improved scaling of non-biological molecular data storage, these demonstrations offer an information-centric perspective on the high-throughput synthesis and screening of small-molecule libraries. Small non-polymeric molecules have tremendous structural diversity that can be used to represent information. Here the authors encode data in synthesized libraries of Ugi products.
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Liu B, Shi Q, Hu L, Huang Z, Zhu X, Zhang Z. Engineering digital polymer based on thiol–maleimide Michael coupling toward effective writing and reading. Polym Chem 2020. [DOI: 10.1039/c9py01939a] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Based on thiol–maleimide Michael coupling, a digital polymer allowing efficient message writing and reading was rationally designed.
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Affiliation(s)
- Baolei Liu
- State and Local Joint Engineering Laboratory for Novel Functional Polymeric Materials; Jiangsu Key Laboratory of Advanced Functional Polymer Design and Application; College of Chemistry
- Chemical Engineering and Materials Science
- Soochow University, Suzhou
- China
| | - Qiunan Shi
- State and Local Joint Engineering Laboratory for Novel Functional Polymeric Materials; Jiangsu Key Laboratory of Advanced Functional Polymer Design and Application; College of Chemistry
- Chemical Engineering and Materials Science
- Soochow University, Suzhou
- China
| | - Lihua Hu
- Analysis and Testing Center
- Soochow University
- Suzhou 215123
- China
| | - Zhihao Huang
- State and Local Joint Engineering Laboratory for Novel Functional Polymeric Materials; Jiangsu Key Laboratory of Advanced Functional Polymer Design and Application; College of Chemistry
- Chemical Engineering and Materials Science
- Soochow University, Suzhou
- China
| | - Xiulin Zhu
- State and Local Joint Engineering Laboratory for Novel Functional Polymeric Materials; Jiangsu Key Laboratory of Advanced Functional Polymer Design and Application; College of Chemistry
- Chemical Engineering and Materials Science
- Soochow University, Suzhou
- China
- Global Institute of Software Technology
| | - Zhengbiao Zhang
- State and Local Joint Engineering Laboratory for Novel Functional Polymeric Materials; Jiangsu Key Laboratory of Advanced Functional Polymer Design and Application; College of Chemistry
- Chemical Engineering and Materials Science
- Soochow University, Suzhou
- China
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43
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Affiliation(s)
- Jean‐François Lutz
- Université de Strasbourg, CNRSInstitut Charles Sadron, UPR22 23 rue du Loess 67034 Strasbourg Cedex 2 France
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