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Li Z, Wang Y, Zhang L, Chen Z, Barth JV, Li J, Lin T. On-Surface Synthesis of Five-Membered Copper Metallacycles Using Terminal Alkynes. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024; 40:15214-15219. [PMID: 38981093 DOI: 10.1021/acs.langmuir.4c01653] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/11/2024]
Abstract
We present our studies on the adsorption, deprotonation, and reactions of 4,4″-diethynyl-1,1':4',1″-terphenyl on Cu(111) under ultrahigh-vacuum conditions using scanning tunneling microscopy combined with density functional theory calculations. Sequential annealing treatments induce deprotonation of pristine molecules followed by chemical reactions, resulting in branched nanostructures. Within the nanostructures, a previously unreported, double-spot linkage is observed. Our density functional theory calculations unravel that this linkage corresponds to a five-membered copper metallacycle.
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Affiliation(s)
- Zhanbo Li
- College of New Materials and New Energies, Shenzhen Technology University, Shenzhen 518118, China
| | - Yule Wang
- Beijing Institute of Technology (Zhuhai), Beijing Institute of Technology, Zhuhai 519088, China
| | - Liding Zhang
- Physik-Department E20, Technische Universität München, James-Franck-Str. 1, 85748 Garching, Germany
| | - Zhi Chen
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen 518071, China
| | - Johannes V Barth
- Physik-Department E20, Technische Universität München, James-Franck-Str. 1, 85748 Garching, Germany
| | - Juan Li
- Beijing Institute of Technology (Zhuhai), Beijing Institute of Technology, Zhuhai 519088, China
- Department of Materials Science, Shenzhen MSU-BIT University, Shenzhen 518172, China
| | - Tao Lin
- College of New Materials and New Energies, Shenzhen Technology University, Shenzhen 518118, China
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2
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Mallada B, Villalobos F, Donoso B, Casares R, Longhi G, Mendieta-Moreno JI, Jiménez-Martín A, Haïdour A, Seepersaud R, Rajagopal L, de la Torre B, Millán A, Cuerva JM. Single-Molecule Identification of the Isomers of a Lipidic Antibody Activator. J Phys Chem Lett 2024; 15:6935-6942. [PMID: 38935930 PMCID: PMC11247479 DOI: 10.1021/acs.jpclett.4c00164] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Revised: 03/29/2024] [Accepted: 05/03/2024] [Indexed: 06/29/2024]
Abstract
Molecular structural elucidation can be accomplished by different techniques, such as nuclear magnetic resonance or X-ray diffraction. However, the former does not give information about the three-dimensional atomic arrangement, and the latter needs crystallizable solid samples. An alternative is direct, real-space visualization of the molecules by cryogenic scanning tunneling microscopy (STM). This technique is usually limited to thermally robust molecules because an annealing step is required for sample deposition. A landmark development has been the coupling of STM with electrospray deposition (ESD), which smooths the process and widens the scope of the visualization technique. In this work, we present the on-surface characterization of air-, light-, and temperature-sensitive rhamnopolyene with relevance in molecular biology. Supported by theoretical calculations, we characterize two isomers of this flexible molecule, confirming the potential of the technique to inspect labile, non-crystallizable compounds.
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Affiliation(s)
- Benjamin Mallada
- Institute
of Physics, Czech Academy of Sciences, 16200 Prague, Czech Republic
- Regional
Centre of Advanced Technologies and Materials, Czech Advanced Technology
and Research Institute (CATRIN), Palacký
University Olomouc, 78371 Olomouc, Czech Republic
| | - Federico Villalobos
- Departamento
de Química Orgánica, Unidad de Excelencia de Química
Aplicada a la Biomedicina y Medioambiente, C. U. Fuentenueva, Universidad de Granada, 18071 Granada, Spain
| | - Beatriz Donoso
- Departamento
de Química Orgánica, Unidad de Excelencia de Química
Aplicada a la Biomedicina y Medioambiente, C. U. Fuentenueva, Universidad de Granada, 18071 Granada, Spain
| | - Raquel Casares
- Departamento
de Química Orgánica, Unidad de Excelencia de Química
Aplicada a la Biomedicina y Medioambiente, C. U. Fuentenueva, Universidad de Granada, 18071 Granada, Spain
| | - Giovanna Longhi
- Dipartimento
di Medicina Molecolare e Traslazionale, Universitá di Brescia, Viale Europa 11, 25121 Brescia, Italy
| | - Jesús I. Mendieta-Moreno
- Instituto
de Ciencia de Materiales de Madrid (ICMM), Consejo Superior de Investigaciones Científicas (CSIC), 28049 Madrid, Spain
| | - Alejandro Jiménez-Martín
- Institute
of Physics, Czech Academy of Sciences, 16200 Prague, Czech Republic
- Regional
Centre of Advanced Technologies and Materials, Czech Advanced Technology
and Research Institute (CATRIN), Palacký
University Olomouc, 78371 Olomouc, Czech Republic
- Faculty
of Nuclear Sciences and Physical Engineering, Czech Technical University, 11519 Prague, Czech
Republic
| | - Ali Haïdour
- Unidad
de Resonancia Magnética Nuclear, Centro de Instrumentación
Científica, Universidad de Granada, Paseo Juan Osorio s/n, 18071 Granada, Spain
| | - Ravin Seepersaud
- Center
for Global Infectious Disease Research, Seattle Children’s Research Institute, Seattle, Washington 98109, United States
| | - Lakshmi Rajagopal
- Center
for Global Infectious Disease Research, Seattle Children’s Research Institute, Seattle, Washington 98109, United States
- Department
of Global Health, University of Washington, Seattle, Washington 98105, United States
- Department
of Pediatrics, University of Washington, Seattle, Washington 98105, United States
| | - Bruno de la Torre
- Regional
Centre of Advanced Technologies and Materials, Czech Advanced Technology
and Research Institute (CATRIN), Palacký
University Olomouc, 78371 Olomouc, Czech Republic
| | - Alba Millán
- Departamento
de Química Orgánica, Unidad de Excelencia de Química
Aplicada a la Biomedicina y Medioambiente, C. U. Fuentenueva, Universidad de Granada, 18071 Granada, Spain
| | - Juan M. Cuerva
- Departamento
de Química Orgánica, Unidad de Excelencia de Química
Aplicada a la Biomedicina y Medioambiente, C. U. Fuentenueva, Universidad de Granada, 18071 Granada, Spain
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Xie J, Li W, Lu Y, Zheng Y, Huang Y, Chen S, Song Q. Unlocking Diverse π-Bond Enrichment Frameworks by the Synthesis and Conversion of Boronated Phenyldiethynylethylenes. J Am Chem Soc 2024; 146:10167-10176. [PMID: 38536043 DOI: 10.1021/jacs.4c01989] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/11/2024]
Abstract
The π-bond enrichment frameworks not only serve as a crucial building block in organic synthesis but also assume a pivotal role in the fields of materials science, biomedicine, photochemistry, and other related disciplines owing to their distinctive structural characteristics. The incorporation of various substituents into the C═C double bonds of tetrasubstituted alkenes is currently a highly significant research area. However, the synthesis of tetrasubstituted alkenes with diverse substituents on double bonds poses a significant challenge in achieving stereoselectivity. Here, we reported an efficient and convergent route of Cu-catalyzed borylalkynylation of both symmetrical and unsymmetrical 1,3-diynes, B2pin2, and acetylene bromide to the construction of boronated phenyldiethynylethylene (BPDEE) derivatives with excellent chemo-, stereo-, and regioselectivities. BPDEE derivatives could transform into novel tetrasubstituted organic π-conjugated gem-diphenyldiethynylethylene (DPDEE), vinylphenyldiethynylethylene (VPDEE), and phenyltriethynylethylene (PTEE) derivatives by a stepwise process, which provides a flexible platform for the synthesis of complex π-bond enrichment frameworks that were difficult to synthesize by previous methods. The initial optical characterization revealed that the synthesized molecules exhibited aggregation-induced emission (AIE) properties, which further establishes the groundwork for future applications and enriches and advances the field of functional π-conjugated frameworks research.
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Affiliation(s)
- Jinhui Xie
- Key Laboratory of Molecule Synthesis and Function Discovery, Fujian Province University, College of Chemistry at Fuzhou University, Fuzhou, Fujian 350108, China
| | - Wangyang Li
- Key Laboratory of Molecule Synthesis and Function Discovery, Fujian Province University, College of Chemistry at Fuzhou University, Fuzhou, Fujian 350108, China
| | - Yong Lu
- Key Laboratory of Molecule Synthesis and Function Discovery, Fujian Province University, College of Chemistry at Fuzhou University, Fuzhou, Fujian 350108, China
| | - Yanping Zheng
- Key Laboratory of Molecule Synthesis and Function Discovery, Fujian Province University, College of Chemistry at Fuzhou University, Fuzhou, Fujian 350108, China
| | - Yanying Huang
- Key Laboratory of Molecule Synthesis and Function Discovery, Fujian Province University, College of Chemistry at Fuzhou University, Fuzhou, Fujian 350108, China
| | - Shanglin Chen
- Key Laboratory of Molecule Synthesis and Function Discovery, Fujian Province University, College of Chemistry at Fuzhou University, Fuzhou, Fujian 350108, China
| | - Qiuling Song
- Key Laboratory of Molecule Synthesis and Function Discovery, Fujian Province University, College of Chemistry at Fuzhou University, Fuzhou, Fujian 350108, China
- School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, Henan 453007, China
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Wang J, Niu K, Zhu H, Xu C, Deng C, Zhao W, Huang P, Lin H, Li D, Rosen J, Liu P, Allegretti F, Barth JV, Yang B, Björk J, Li Q, Chi L. Universal inter-molecular radical transfer reactions on metal surfaces. Nat Commun 2024; 15:3030. [PMID: 38589464 PMCID: PMC11001993 DOI: 10.1038/s41467-024-47252-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Accepted: 03/23/2024] [Indexed: 04/10/2024] Open
Abstract
On-surface synthesis provides tools to prepare low-dimensional supramolecular structures. Traditionally, reactive radicals are a class of single-electron species, serving as exceptional electron-withdrawing groups. On metal surfaces, however, such species are affected by conduction band screening effects that may even quench their unpaired electron characteristics. As a result, radicals are expected to be less active, and reactions catalyzed by surface-stabilized radicals are rarely reported. Herein, we describe a class of inter-molecular radical transfer reactions on metal surfaces. With the assistance of aryl halide precursors, the coupling of terminal alkynes is steered from non-dehydrogenated to dehydrogenated products, resulting in alkynyl-Ag-alkynyl bonds. Dehalogenated molecules are fully passivated by detached hydrogen atoms. The reaction mechanism is unraveled by various surface-sensitive technologies and density functional theory calculations. Moreover, we reveal the universality of this mechanism on metal surfaces. Our studies enrich the on-surface synthesis toolbox and develop a pathway for producing low-dimensional organic materials.
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Affiliation(s)
- Junbo Wang
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an, 710119, China
- Institute of Functional Nano & Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional Materials & Devices, Soochow University, Suzhou, 215123, China
| | - Kaifeng Niu
- Institute of Functional Nano & Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional Materials & Devices, Soochow University, Suzhou, 215123, China
- Department of Physics, Chemistry and Biology, IFM, Linköping University, Linköping, 58183, Sweden
| | - Huaming Zhu
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an, 710119, China
| | - Chaojie Xu
- Institute of Functional Nano & Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional Materials & Devices, Soochow University, Suzhou, 215123, China
| | - Chuan Deng
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an, 710119, China
| | - Wenchao Zhao
- Physics Department E20, Technical University of Munich, James-Franck-Str. 1, 85748, Garching, Germany
| | - Peipei Huang
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an, 710119, China
| | - Haiping Lin
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an, 710119, China
| | - Dengyuan Li
- Key Laboratory for Advanced Materials and Feringa Nobel Prize Scientist Joint Research Center, Frontiers Science Center for Materiobiology and Dynamic Chemistry, State Key Laboratory of Chemical Engineering, School of Chemistry and Molecular Engineering, East China University of Science & Technology, Shanghai, 200237, China
| | - Johanna Rosen
- Department of Physics, Chemistry and Biology, IFM, Linköping University, Linköping, 58183, Sweden
| | - Peinian Liu
- Key Laboratory for Advanced Materials and Feringa Nobel Prize Scientist Joint Research Center, Frontiers Science Center for Materiobiology and Dynamic Chemistry, State Key Laboratory of Chemical Engineering, School of Chemistry and Molecular Engineering, East China University of Science & Technology, Shanghai, 200237, China
| | - Francesco Allegretti
- Physics Department E20, Technical University of Munich, James-Franck-Str. 1, 85748, Garching, Germany
| | - Johannes V Barth
- Physics Department E20, Technical University of Munich, James-Franck-Str. 1, 85748, Garching, Germany
| | - Biao Yang
- Institute of Functional Nano & Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional Materials & Devices, Soochow University, Suzhou, 215123, China.
- Physics Department E20, Technical University of Munich, James-Franck-Str. 1, 85748, Garching, Germany.
| | - Jonas Björk
- Department of Physics, Chemistry and Biology, IFM, Linköping University, Linköping, 58183, Sweden.
| | - Qing Li
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an, 710119, China.
| | - Lifeng Chi
- Institute of Functional Nano & Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional Materials & Devices, Soochow University, Suzhou, 215123, China.
- Department of Materials Science and Engineering, Macau University of Science and Technology, Macau, 999078, China.
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Zhao C, Bhagwandin DD, Xu W, Ruffieux P, Khan SI, Pignedoli CA, Fasel R, Rubin Y. Dramatic Acceleration of the Hopf Cyclization on Gold(111): From Enediynes to Peri-Fused Diindenochrysene Graphene Nanoribbons. J Am Chem Soc 2024; 146:2474-2483. [PMID: 38227949 PMCID: PMC10835731 DOI: 10.1021/jacs.3c10144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2024]
Abstract
Hopf et al. reported the high-temperature 6π-electrocyclization of cis-hexa-1,3-diene-5-yne to benzene in 1969. Subsequent studies using this cyclization have been limited by its very high reaction barrier. Here, we show that the reaction barrier for two model systems, (E)-1,3,4,6-tetraphenyl-3-hexene-1,5-diyne (1a) and (E)-3,4-bis(4-iodophenyl)-1,6-diphenyl-3-hexene-1,5-diyne (1b), is decreased by nearly half on a Au(111) surface. We have used scanning tunneling microscopy (STM) and noncontact atomic force microscopy (nc-AFM) to monitor the Hopf cyclization of enediynes 1a,b on Au(111). Enediyne 1a undergoes two sequential, quantitative Hopf cyclizations, first to naphthalene derivative 2, and finally to chrysene 3. Density functional theory (DFT) calculations reveal that a gold atom from the Au(111) surface is involved in all steps of this reaction and that it is crucial to lowering the reaction barrier. Our findings have important implications for the synthesis of novel graphene nanoribbons. Ullmann-like coupling of enediyne 1b at 20 °C on Au(111), followed by a series of Hopf cyclizations and aromatization reactions at higher temperatures, produces nanoribbons 12 and 13. These results show for the first time that graphene nanoribbons can be synthesized on a Au(111) surface using the Hopf cyclization mechanism.
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Affiliation(s)
- Chenxiao Zhao
- Nanotech@surfaces Laboratory, Empa-Swiss Federal Laboratories for Materials Science and Technology, 8600 Dübendorf, Switzerland
| | - Dayanni D Bhagwandin
- Department of Chemistry and Biochemistry, University of California, Los Angeles, 607 Charles Young Dr. East, Los Angeles, California 90095-1567, United States
| | - Wangwei Xu
- Nanotech@surfaces Laboratory, Empa-Swiss Federal Laboratories for Materials Science and Technology, 8600 Dübendorf, Switzerland
- Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, 3012 Bern, Switzerland
| | - Pascal Ruffieux
- Nanotech@surfaces Laboratory, Empa-Swiss Federal Laboratories for Materials Science and Technology, 8600 Dübendorf, Switzerland
| | - Saeed I Khan
- Department of Chemistry and Biochemistry, University of California, Los Angeles, 607 Charles Young Dr. East, Los Angeles, California 90095-1567, United States
| | - Carlo A Pignedoli
- Nanotech@surfaces Laboratory, Empa-Swiss Federal Laboratories for Materials Science and Technology, 8600 Dübendorf, Switzerland
| | - Roman Fasel
- Nanotech@surfaces Laboratory, Empa-Swiss Federal Laboratories for Materials Science and Technology, 8600 Dübendorf, Switzerland
- Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, 3012 Bern, Switzerland
| | - Yves Rubin
- Department of Chemistry and Biochemistry, University of California, Los Angeles, 607 Charles Young Dr. East, Los Angeles, California 90095-1567, United States
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