1
|
Bukkuri A. Eco-evolutionary dynamics of structured populations in periodically fluctuating environments: a G function approach. Theory Biosci 2024:10.1007/s12064-024-00424-5. [PMID: 39167330 DOI: 10.1007/s12064-024-00424-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Accepted: 08/10/2024] [Indexed: 08/23/2024]
Abstract
Understanding the ecological and evolutionary dynamics of populations is critical for both basic and applied purposes in a variety of biological contexts. Although several modeling frameworks have been developed to simulate eco-evolutionary dynamics, many fewer address how to model structured populations. In a prior paper, we put forth the first modeling approach to simulate eco-evolutionary dynamics in structured populations under the G function modeling framework. However, this approach does not allow for accurate simulation under fluctuating environmental conditions. To address this limitation, we draw on the study of periodic differential equations to propose a modified approach that uses a different definition of fitness more suitable for fluctuating environments. We illustrate this method with a simple toy model of life history trade-offs. The generality of this approach allows it to be used in a variety of biological contexts.
Collapse
Affiliation(s)
- Anuraag Bukkuri
- Department of Computational & Systems Biology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
| |
Collapse
|
2
|
Wen T, Cheong KH. Parrondo's paradox reveals counterintuitive wins in biology and decision making in society. Phys Life Rev 2024; 51:33-59. [PMID: 39288541 DOI: 10.1016/j.plrev.2024.08.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2024] [Accepted: 08/02/2024] [Indexed: 09/19/2024]
Abstract
Parrondo's paradox refers to the paradoxical phenomenon of combining two losing strategies in a certain manner to obtain a winning outcome. It has been applied to uncover unexpected outcomes across various disciplines, particularly at different spatiotemporal scales within ecosystems. In this article, we provide a comprehensive review of recent developments in Parrondo's paradox within the interdisciplinary realm of the physics of life, focusing on its significant applications across biology and the broader life sciences. Specifically, we examine its relevance from genetic pathways and phenotypic regulation, to intercellular interaction within multicellular organisms, and finally to the competition between populations and species in ecosystems. This phenomenon, spanning multiple biological domains and scales, enhances our understanding of the unified characteristics of life and reveals that adaptability in a drastically changing environment, rather than the inherent excellence of a trait, underpins survival in the process of evolution. We conclude by summarizing our findings and discussing future research directions that hold promise for advancing the field.
Collapse
Affiliation(s)
- Tao Wen
- Division of Mathematical Sciences, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, S637371, Singapore
| | - Kang Hao Cheong
- Division of Mathematical Sciences, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, S637371, Singapore; College of Computing and Data Science (CCDS), Nanyang Technological University, 50 Nanyang Avenue, S639798, Singapore.
| |
Collapse
|
3
|
Shi Y, Wang J, Wang Z, Jiao Z, Du Q, Jia X, Niu J, Du R, Ji G, Duan P, Lv P, Cao J. Integrating transcriptome and physiological analyses to elucidate the molecular responses of sorghum to fluxofenim and metolachlor herbicide. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY 2023; 197:105692. [PMID: 38072547 DOI: 10.1016/j.pestbp.2023.105692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Revised: 10/23/2023] [Accepted: 11/08/2023] [Indexed: 12/18/2023]
Abstract
The extensive use of herbicides has raised concerns about crop damage, necessitating the development of effective herbicide safeners. Fluxofenim has emerged as a promising herbicide safener; however, it's underlying mechanism remains unclear. Here, we screened two inbred lines 407B and HYZ to investigate the detoxication of fluxofenim in mitigating metolachlor damage in sorghum. Metolachlor inhibited seedling growth in both 407B and HYZ, while, fluxofenim could significantly restore the growth of 407B, but not effectively complement the growth of HYZ. Fluxofenim significantly increased the activities of glutathione-S-transferase (GST) to decrease metolachlor residue in 407B, but not in HYZ. This implys that fluxofenim may reduce metolachlor toxicity by regulating its metabolism. Furthermore, metolachlor suppressed AUX-related and JA-related genes expression, while up-regulated the expression of SA-related genes. Fluxofenim also restored the expression of AUX-related and JA-related genes inhibited by metolachlor and further increased expression of SA-related genes. Moreover, we noted a significant increase in the content of trans-zeatin O-glucoside (tZOG) and Gibberellin1 (GA1) after the fluxofenim treatment. In conclusion, fluxofenim may reduce the injury of herbicide by affecting herbicide metabolism and regulating hormone signaling pathway.
Collapse
Affiliation(s)
- Yannan Shi
- Institute of Millet Crops, Hebei Academy of Agriculture & Forestry Sciences/Hebei Branch of China National Sorghum Improvement Center, Shijiazhuang 050035, China
| | - Jinping Wang
- Institute of Millet Crops, Hebei Academy of Agriculture & Forestry Sciences/Hebei Branch of China National Sorghum Improvement Center, Shijiazhuang 050035, China
| | - Zhifang Wang
- Institute of Millet Crops, Hebei Academy of Agriculture & Forestry Sciences/Hebei Branch of China National Sorghum Improvement Center, Shijiazhuang 050035, China
| | - Zhiyin Jiao
- Institute of Millet Crops, Hebei Academy of Agriculture & Forestry Sciences/Hebei Branch of China National Sorghum Improvement Center, Shijiazhuang 050035, China
| | - Qi Du
- Institute of Millet Crops, Hebei Academy of Agriculture & Forestry Sciences/Hebei Branch of China National Sorghum Improvement Center, Shijiazhuang 050035, China
| | - Xinyue Jia
- Institute of Millet Crops, Hebei Academy of Agriculture & Forestry Sciences/Hebei Branch of China National Sorghum Improvement Center, Shijiazhuang 050035, China
| | - Jingtian Niu
- Institute of Millet Crops, Hebei Academy of Agriculture & Forestry Sciences/Hebei Branch of China National Sorghum Improvement Center, Shijiazhuang 050035, China
| | - Ruiheng Du
- Institute of Millet Crops, Hebei Academy of Agriculture & Forestry Sciences/Hebei Branch of China National Sorghum Improvement Center, Shijiazhuang 050035, China
| | - Guisu Ji
- Institute of Millet Crops, Hebei Academy of Agriculture & Forestry Sciences/Hebei Branch of China National Sorghum Improvement Center, Shijiazhuang 050035, China
| | - Pengwei Duan
- Hebei Academy of Agriculture & Forestry Sciences, Shijiazhuang 050000, China
| | - Peng Lv
- Institute of Millet Crops, Hebei Academy of Agriculture & Forestry Sciences/Hebei Branch of China National Sorghum Improvement Center, Shijiazhuang 050035, China.
| | - Junfeng Cao
- Frontiers Science Center for Transformative Molecules, Joint International Research Laboratory of Metabolic and Developmental Sciences, Plant Biotechnology Research Center, Fudan-SJTU Nottingham Plant Biotechnology R&D Center, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China.
| |
Collapse
|