1
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Petrova VV, Solovev YV, Porozov YB, Polynski MV. Will We Witness Enzymatic or Pd-(Oligo)Peptide Catalysis in Suzuki Cross-Coupling Reactions? J Org Chem 2024. [PMID: 38861408 DOI: 10.1021/acs.joc.4c00409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2024]
Abstract
Despite the development of numerous advanced ligands for Pd-catalyzed Suzuki cross-coupling reaction, the potential of (oligo)peptides serving as ligands remains unexplored. This study demonstrates via density functional theory (DFT) modeling that (oligo)peptide ligands can drive superior activity compared to classic phosphines in these reactions. The utilization of natural amino acids such as Met, SeMet, and His leads to strong binding of the Pd center, thereby ensuring substantial stability of the system. The increasing sustainability and economic viability of (oligo)peptide synthesis open new prospects for applying Pd-(oligo)peptide systems as greener catalysts. The feasibility of de novo engineering an artificial Pd-based enzyme for Suzuki cross-coupling is discussed, laying the groundwork for future innovations in catalytic systems.
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Affiliation(s)
- Vlada V Petrova
- M.M. Shemyakin and Yu.A. Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Miklukho-Maklaya 16/10, Moscow 117997, Russia
- Quantum Chemistry Department, Institute of Chemistry, St. Petersburg State University, Universitetsky Prospect 26, Saint Petersburg 198504, Russia
| | - Yaroslav V Solovev
- M.M. Shemyakin and Yu.A. Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Miklukho-Maklaya 16/10, Moscow 117997, Russia
| | - Yuri B Porozov
- St. Petersburg School of Physics, Mathematics, and Computer Science, HSE University, Kantemirovskaya Street 3-1A, Saint Petersburg 194100, Russia
- Advitam Laboratory, Vodovodska 158, Belgrade 11147, Serbia
| | - Mikhail V Polynski
- Department of Chemical and Biomolecular Engineering, National University of Singapore, 4 Engineering Drive 4, Singapore 117585, Singapore
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2
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Tanaka Y. Organometallics in molecular junctions: conductance, functions, and reactions. Dalton Trans 2024; 53:8512-8523. [PMID: 38712999 DOI: 10.1039/d4dt00668b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/08/2024]
Abstract
Molecular junctions, which involve sandwiching molecular structures between electrodes, play a crucial role in molecular electronics. Recent advances in this field have revealed the vital role of organometallic chemistry in the investigation of molecular junctions, which has added to their well-known contributions to catalysis and materials chemistry. This review summarizes the recent examples of organometallic chemistry applications in molecular junctions, which can be categorized into three types, i.e., class I encompassing molecular junctions with bridging organometallic complexes, class II involving molecular junctions with covalent and noncovalent metal electrode-carbon bonds, and class III comprising organometallic reactions within molecular junctions.
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Affiliation(s)
- Yuya Tanaka
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan.
- School of Materials and Chemical Technology, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan
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3
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Qiao X, Sil A, Sangtarash S, Smith SM, Wu C, Robertson CM, Nichols RJ, Higgins SJ, Sadeghi H, Vezzoli A. Nuclear Magnetic Resonance Chemical Shift as a Probe for Single-Molecule Charge Transport. Angew Chem Int Ed Engl 2024; 63:e202402413. [PMID: 38478719 DOI: 10.1002/anie.202402413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Indexed: 04/05/2024]
Abstract
Existing modelling tools, developed to aid the design of efficient molecular wires and to better understand their charge-transport behaviour and mechanism, have limitations in accuracy and computational cost. Further research is required to develop faster and more precise methods that can yield information on how charge transport properties are impacted by changes in the chemical structure of a molecular wire. In this study, we report a clear semilogarithmic correlation between charge transport efficiency and nuclear magnetic resonance chemical shifts in multiple series of molecular wires, also accounting for the presence of chemical substituents. The NMR data was used to inform a simple tight-binding model that accurately captures the experimental single-molecule conductance values, especially useful in this case as more sophisticated density functional theory calculations fail due to inherent limitations. Our study demonstrates the potential of NMR spectroscopy as a valuable tool for characterising, rationalising, and gaining additional insights on the charge transport properties of single-molecule junctions.
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Affiliation(s)
- X Qiao
- Department of Chemistry, University of Liverpool, Crown Street, Liverpool, L69 7ZD, United Kingdom
| | - A Sil
- Department of Chemistry, University of Liverpool, Crown Street, Liverpool, L69 7ZD, United Kingdom
| | - S Sangtarash
- Device Modelling Group, School of Engineering, University of Warwick, Coventry, CV4 7AL, United Kingdom
| | - S M Smith
- Department of Chemistry, University of Liverpool, Crown Street, Liverpool, L69 7ZD, United Kingdom
| | - C Wu
- Department of Chemistry, University of Liverpool, Crown Street, Liverpool, L69 7ZD, United Kingdom
- Institute of Optoelectronic Materials and Devices, Faculty of Materials Metallurgy and Chemistry, Jiangxi University of Science and Technology, Ganzhou, 341000, China
| | - C M Robertson
- Department of Chemistry, University of Liverpool, Crown Street, Liverpool, L69 7ZD, United Kingdom
| | - R J Nichols
- Department of Chemistry, University of Liverpool, Crown Street, Liverpool, L69 7ZD, United Kingdom
| | - S J Higgins
- Department of Chemistry, University of Liverpool, Crown Street, Liverpool, L69 7ZD, United Kingdom
| | - H Sadeghi
- Device Modelling Group, School of Engineering, University of Warwick, Coventry, CV4 7AL, United Kingdom
| | - A Vezzoli
- Department of Chemistry, University of Liverpool, Crown Street, Liverpool, L69 7ZD, United Kingdom
- Stephenson Institute for Renewable Energy, University of Liverpool, Peach Street, Liverpool, L69 7ZF, United Kingdom
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4
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Guo Y, Li M, Zhao C, Zhang Y, Jia C, Guo X. Understanding Emergent Complexity from a Single-Molecule Perspective. JACS AU 2024; 4:1278-1294. [PMID: 38665639 PMCID: PMC11040556 DOI: 10.1021/jacsau.3c00845] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Revised: 02/27/2024] [Accepted: 02/27/2024] [Indexed: 04/28/2024]
Abstract
Molecules, with structural, scaling, and interaction diversities, are crucial for the emergence of complex behaviors. Interactions are essential prerequisites for complex systems to exhibit emergent properties that surpass the sum of individual component characteristics. Tracing the origin of complex molecular behaviors from interactions is critical to understanding ensemble emergence, and requires insights at the single-molecule level. Electrical signals from single-molecule junctions enable the observation of individual molecular behaviors, as well as intramolecular and intermolecular interactions. This technique provides a foundation for bottom-up explorations of emergent complexity. This Perspective highlights investigations of various interactions via single-molecule junctions, including intramolecular orbital and weak intermolecular interactions and interactions in chemical reactions. It also provides potential directions for future single-molecule junctions in complex system research.
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Affiliation(s)
- Yilin Guo
- Beijing
National Laboratory for Molecular Sciences, National Biomedical Imaging
Center, College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, Beijing 100871, P. R. China
| | - Mingyao Li
- School
of Materials Science and Engineering, Peking
University, No.5 Yiheyuan
Road, Haidian District, Beijing 100871, P. R. China
| | - Cong Zhao
- Center
of Single-Molecule Sciences, Institute of Modern Optics, Frontiers
Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-scale
Optical Information Science and Technology, College of Electronic
Information and Optical Engineering, Nankai
University, 38 Tongyan Road, Jinnan District, Tianjin 300350, P. R. China
| | - Yanfeng Zhang
- School
of Materials Science and Engineering, Peking
University, No.5 Yiheyuan
Road, Haidian District, Beijing 100871, P. R. China
| | - Chuancheng Jia
- Center
of Single-Molecule Sciences, Institute of Modern Optics, Frontiers
Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-scale
Optical Information Science and Technology, College of Electronic
Information and Optical Engineering, Nankai
University, 38 Tongyan Road, Jinnan District, Tianjin 300350, P. R. China
| | - Xuefeng Guo
- Beijing
National Laboratory for Molecular Sciences, National Biomedical Imaging
Center, College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, Beijing 100871, P. R. China
- Center
of Single-Molecule Sciences, Institute of Modern Optics, Frontiers
Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-scale
Optical Information Science and Technology, College of Electronic
Information and Optical Engineering, Nankai
University, 38 Tongyan Road, Jinnan District, Tianjin 300350, P. R. China
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5
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Ju H, Cheng L, Li M, Mei K, He S, Jia C, Guo X. Single-Molecule Electrical Profiling of Peptides and Proteins. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024:e2401877. [PMID: 38639403 DOI: 10.1002/advs.202401877] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Revised: 04/03/2024] [Indexed: 04/20/2024]
Abstract
In recent decades, there has been a significant increase in the application of single-molecule electrical analysis platforms in studying proteins and peptides. These advanced analysis methods have the potential for deep investigation of enzymatic working mechanisms and accurate monitoring of dynamic changes in protein configurations, which are often challenging to achieve in ensemble measurements. In this work, the prominent research progress in peptide and protein-related studies are surveyed using electronic devices with single-molecule/single-event sensitivity, including single-molecule junctions, single-molecule field-effect transistors, and nanopores. In particular, the successful commercial application of nanopores in DNA sequencing has made it one of the most promising techniques in protein sequencing at the single-molecule level. From single peptides to protein complexes, the correlation between their electrical characteristics, structures, and biological functions is gradually being established. This enables to distinguish different molecular configurations of these biomacromolecules through real-time electrical monitoring of their life activities, significantly improving the understanding of the mechanisms underlying various life processes.
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Affiliation(s)
- Hongyu Ju
- School of Pharmaceutical Science and Technology, Tianjin University, Tianjin, 300072, P. R. China
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Microscale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, 300350, P. R. China
| | - Li Cheng
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Microscale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, 300350, P. R. China
| | - Mengmeng Li
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Microscale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, 300350, P. R. China
| | - Kunrong Mei
- School of Pharmaceutical Science and Technology, Tianjin University, Tianjin, 300072, P. R. China
| | - Suhang He
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Microscale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, 300350, P. R. China
| | - Chuancheng Jia
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Microscale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, 300350, P. R. China
| | - Xuefeng Guo
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Microscale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, 300350, P. R. China
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, P. R. China
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6
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Reis IF, Gehlen MH. Single-Molecule Catalysis in the Palladium Cross-Coupling Reaction Cycle. J Phys Chem Lett 2024; 15:2352-2358. [PMID: 38388364 DOI: 10.1021/acs.jpclett.3c03623] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/24/2024]
Abstract
Single-molecule (SM) methods are applied to study various types of catalytic processes in chemical and biochemical reactions. In this study, the Suzuki-Miyaura cross-coupling reaction forming a fluorescent product is investigated within the SM approximation. Stochastic analysis of emission intermittency in selected nanoscopic spots allows us to determine the single-molecule turnover frequency (SM-TOF) of the Pd catalyst in a specific probe reaction. We generate and analyze simulated intermittency time traces of a single catalyst surrounded by reactant molecules to assess the reliability of the method applied to real intermittency time trace data from hundreds of nanoscopic fluorescence spots. The results demonstrate that the proposed method can be used to evaluate the average SM-TOF of Pd in a cross-coupling reaction.
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Affiliation(s)
- Izadora F Reis
- Department of Physical Chemistry, Institute of Chemistry of São Carlos, University of São Paulo, São Carlos, São Paulo 13566-590, Brazil
| | - Marcelo H Gehlen
- Department of Physical Chemistry, Institute of Chemistry of São Carlos, University of São Paulo, São Carlos, São Paulo 13566-590, Brazil
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7
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Yang C, Chen Z, Yu C, Cao J, Ke G, Zhu W, Liang W, Huang J, Cai W, Saha C, Sabuj MA, Rai N, Li X, Yang J, Li Y, Huang F, Guo X. Regulation of quantum spin conversions in a single molecular radical. NATURE NANOTECHNOLOGY 2024:10.1038/s41565-024-01632-2. [PMID: 38448520 DOI: 10.1038/s41565-024-01632-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2023] [Accepted: 02/13/2024] [Indexed: 03/08/2024]
Abstract
Free radicals, generally formed through the cleavage of covalent electron-pair bonds, play an important role in diverse fields ranging from synthetic chemistry to spintronics and nonlinear optics. However, the characterization and regulation of the radical state at a single-molecule level face formidable challenges. Here we present the detection and sophisticated tuning of the open-shell character of individual diradicals with a donor-acceptor structure via a sensitive single-molecule electrical approach. The radical is sandwiched between nanogapped graphene electrodes via covalent amide bonds to construct stable graphene-molecule-graphene single-molecule junctions. We measure the electrical conductance as a function of temperature and track the evolution of the closed-shell and open-shell electronic structures in real time, the open-shell triplet state being stabilized with increasing temperature. Furthermore, we tune the spin states by external stimuli, such as electrical and magnetic fields, and extract thermodynamic and kinetic parameters of the transition between closed-shell and open-shell states. Our findings provide insights into the evolution of single-molecule radicals under external stimuli, which may proof instrumental for the development of functional quantum spin-based molecular devices.
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Affiliation(s)
- Caiyao Yang
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Centre, College of Chemistry and Molecular Engineering, Peking University, Beijing, P. R. China
- School of Materials Science and Engineering, Peking University, Beijing, P. R. China
| | - Zhongxin Chen
- Institute of Polymer Optoelectronic Materials and Devices, State Key Laboratory of Luminescent Materials and Devices, South China University of Technology, Guangzhou, P. R. China
| | - Cuiju Yu
- Department of Chemical Physics, University of Science and Technology of China, Hefei, P. R. China
| | - Jiawen Cao
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Centre, College of Chemistry and Molecular Engineering, Peking University, Beijing, P. R. China
| | - Guojun Ke
- Institute of Polymer Optoelectronic Materials and Devices, State Key Laboratory of Luminescent Materials and Devices, South China University of Technology, Guangzhou, P. R. China
| | - Weiya Zhu
- Institute of Polymer Optoelectronic Materials and Devices, State Key Laboratory of Luminescent Materials and Devices, South China University of Technology, Guangzhou, P. R. China
| | - Weixuan Liang
- Institute of Polymer Optoelectronic Materials and Devices, State Key Laboratory of Luminescent Materials and Devices, South China University of Technology, Guangzhou, P. R. China
| | - Jiaxing Huang
- Institute of Polymer Optoelectronic Materials and Devices, State Key Laboratory of Luminescent Materials and Devices, South China University of Technology, Guangzhou, P. R. China
| | - Wanqing Cai
- Institute of Polymer Optoelectronic Materials and Devices, State Key Laboratory of Luminescent Materials and Devices, South China University of Technology, Guangzhou, P. R. China
| | - Chinmoy Saha
- Dave C. Swalm School of Chemical Engineering and Centre for Advanced Vehicular Systems, Mississippi State University, Mississippi State, MS, USA
| | - Md Abdus Sabuj
- Dave C. Swalm School of Chemical Engineering and Centre for Advanced Vehicular Systems, Mississippi State University, Mississippi State, MS, USA
| | - Neeraj Rai
- Dave C. Swalm School of Chemical Engineering and Centre for Advanced Vehicular Systems, Mississippi State University, Mississippi State, MS, USA
| | - Xingxing Li
- Department of Chemical Physics, University of Science and Technology of China, Hefei, P. R. China.
| | - Jinlong Yang
- Department of Chemical Physics, University of Science and Technology of China, Hefei, P. R. China
| | - Yuan Li
- Institute of Polymer Optoelectronic Materials and Devices, State Key Laboratory of Luminescent Materials and Devices, South China University of Technology, Guangzhou, P. R. China.
| | - Fei Huang
- Institute of Polymer Optoelectronic Materials and Devices, State Key Laboratory of Luminescent Materials and Devices, South China University of Technology, Guangzhou, P. R. China.
| | - Xuefeng Guo
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Centre, College of Chemistry and Molecular Engineering, Peking University, Beijing, P. R. China.
- Centre of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Centre for New Organic Matter, Tianjin Key Laboratory of Micro-scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, P. R. China.
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8
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Xie X, Zhang J, Song XQ, Li W, Cao F, Zhou C, Zhu H, Li L. Unveiling Pre-Transmetalation Intermediates in Base-Free Suzuki-Miyaura Cross-Couplings: A Computational Study. Inorg Chem 2024; 63:2606-2615. [PMID: 38267390 DOI: 10.1021/acs.inorgchem.3c03855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2024]
Abstract
The pre-transmetalation intermediates are critically important in Suzuki-Miyaura cross-coupling (SMC) reactions and have become a hot spot of the current research. However, the pre-transmetalation intermediates under base-free conditions have not been clear. Herein, a comprehensive theoretical study is performed on the base-free Pd-catalyzed desulfonative SMC reaction. The fragile coordination feature and the acceleration role of the RuPhos chelate ligand are revealed. The hydrogen-bond complex between the Pd-F complex and aryl boronic acid is identified as an important pre-transmetalation intermediate, which increases the energy span to 32.5 kcal/mol. The controlling factor for the formation of the hydrogen-bond complexes is attributed to the electronegativities of halogen atoms in the metal halide complexes. What is more, other reported SMC reaction systems involving metal halide complexes and aryl boronic acids are reconsidered and suggest that the hydrogen-bond complexes widely exist as stable pre-transmetalation intermediates with influencing the catalytic activities. The earth-abundant Ni-catalyzed desulfonative SMC reaction is further designed and predicted to have a higher activity than the original Pd-catalyzed SMC reaction.
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Affiliation(s)
- Xiaofeng Xie
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
| | - Jiejing Zhang
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
| | - Xue-Qing Song
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
| | - Wan Li
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
| | - Fei Cao
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
| | - Chengyan Zhou
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
| | - Huajie Zhu
- School of Chemical and Pharmaceutical Engineering, Hebei University of Science and Technology, Shijiazhuang, Hebei 050018, P. R. China
| | - Longfei Li
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
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9
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Komoto Y, Ryu J, Taniguchi M. Total variation denoising-based method of identifying the states of single molecules in break junction data. DISCOVER NANO 2024; 19:20. [PMID: 38285285 PMCID: PMC10825082 DOI: 10.1186/s11671-024-03963-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Accepted: 01/22/2024] [Indexed: 01/30/2024]
Abstract
Break junction (BJ) measurements provide insights into the electrical properties of diverse molecules, enabling the direct assessment of single-molecule conductances. The BJ method displays potential for use in determining the dynamics of individual molecules, single-molecule chemical reactions, and biomolecules, such as deoxyribonucleic acid and ribonucleic acid. However, conductance data obtained via single-molecule measurements may be susceptible to fluctuations due to minute structural changes within the junctions. Consequently, clearly identifying the conduction states of these molecules is challenging. This study aims to develop a method of precisely identifying conduction state traces. We propose a novel single-molecule analysis approach that employs total variation denoising (TVD) in signal processing, focusing on the integration of information technology with measured single-molecule data. We successfully applied this method to simulated conductance traces, effectively denoise the data, and elucidate multiple conduction states. The proposed method facilitates the identification of well-defined plateau lengths and supervised machine learning with enhanced accuracies. The introduced TVD-based analytical method is effective in elucidating the states within the measured single-molecule data. This approach exhibits the potential to offer novel perspectives regarding the formation of molecular junctions, conformational changes, and cleavage.
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Affiliation(s)
- Yuki Komoto
- SANKEN, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-0047, Japan.
- Artificial Intelligence Research Center, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-0047, Japan.
- Integrated Frontier Research for Medical Science Division, Institute for Open and Transdisciplinary Research Initiatives (OTRI), Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-0047, Japan.
| | - Jiho Ryu
- SANKEN, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-0047, Japan
| | - Masateru Taniguchi
- SANKEN, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-0047, Japan
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10
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Gu K, Yu C, Zhou W, Liu C. In Operando Visualization of Elementary Turnovers in Photocatalytic Organic Synthesis. J Phys Chem Lett 2024; 15:717-724. [PMID: 38214912 DOI: 10.1021/acs.jpclett.3c03109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2024]
Abstract
We report the in operando visualization of the photocatalytic turnovers on single eosin Y (EY) through a redox-induced photoblinking phenomenon. The photocatalytic cyclization of thiobenzamide (TB) catalyzed by EY was investigated. The analysis of the intensity-versus-time trajectories of single EYs revealed the kinetics and dynamics of the elementary photocatalytic turnovers and the heterogeneity of the activity of individual EYs. The quenching turnover time showed a fast population and a slow population, which could be attributed to the singlet and triplet states of photoexcited EY. The slow quenching turnovers were more dominant at higher TB concentrations. The activity heterogeneity of EYs was studied over a series of reactant concentrations. Excess quenching reagent was found to decrease the percentage of active EYs. The method can be broadly applied to studying the elementary processes of photocatalytic organic reactions in operando.
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Affiliation(s)
- Kai Gu
- School of Polymer Science and Polymer Engineering, University of Akron, Akron, Ohio 44325, United States
| | - Christina Yu
- Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Wenqiao Zhou
- School of Polymer Science and Polymer Engineering, University of Akron, Akron, Ohio 44325, United States
| | - Chunming Liu
- School of Polymer Science and Polymer Engineering, University of Akron, Akron, Ohio 44325, United States
- Department of Chemistry, University of Akron, Akron, Ohio 44325, United States
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11
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Li P, Hou S, Wu Q, Chen Y, Wang B, Ren H, Wang J, Zhai Z, Yu Z, Lambert CJ, Jia C, Guo X. The role of halogens in Au-S bond cleavage for energy-differentiated catalysis at the single-bond limit. Nat Commun 2023; 14:7695. [PMID: 38001141 PMCID: PMC10673828 DOI: 10.1038/s41467-023-43639-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Accepted: 11/15/2023] [Indexed: 11/26/2023] Open
Abstract
The transformation from one compound to another involves the breaking and formation of chemical bonds at the single-bond level, especially during catalytic reactions that are of great significance in broad fields such as energy conversion, environmental science, life science and chemical synthesis. The study of the reaction process at the single-bond limit is the key to understanding the catalytic reaction mechanism and further rationally designing catalysts. Here, we develop a method to monitor the catalytic process from the perspective of the single-bond energy using high-resolution scanning tunneling microscopy single-molecule junctions. Experimental and theoretical studies consistently reveal that the attack of a halogen atom on an Au atom can reduce the breaking energy of Au-S bonds, thereby accelerating the bond cleavage reaction and shortening the plateau length during the single-molecule junction breaking. Furthermore, the distinction in catalytic activity between different halogen atoms can be compared as well. This study establishes the intrinsic relationship among the reaction activation energy, the chemical bond breaking energy and the single-molecule junction breaking process, strengthening our mastery of catalytic reactions towards precise chemistry.
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Affiliation(s)
- Peihui Li
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-Scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, 38 Tongyan Road, Jinnan District, 300350, Tianjin, People's Republic of China
| | - Songjun Hou
- Department of Physics, Lancaster University, Lancaster, LA1 4YB, UK
| | - Qingqing Wu
- Department of Physics, Lancaster University, Lancaster, LA1 4YB, UK
| | - Yijian Chen
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-Scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, 38 Tongyan Road, Jinnan District, 300350, Tianjin, People's Republic of China
| | - Boyu Wang
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-Scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, 38 Tongyan Road, Jinnan District, 300350, Tianjin, People's Republic of China
| | - Haiyang Ren
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-Scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, 38 Tongyan Road, Jinnan District, 300350, Tianjin, People's Republic of China
| | - Jinying Wang
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-Scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, 38 Tongyan Road, Jinnan District, 300350, Tianjin, People's Republic of China
| | - Zhaoyi Zhai
- State Key Laboratory of Medicinal Chemical Biology, College of Pharmacy, Nankai University, 300350, Tianjin, People's Republic of China
| | - Zhongbo Yu
- State Key Laboratory of Medicinal Chemical Biology, College of Pharmacy, Nankai University, 300350, Tianjin, People's Republic of China.
| | - Colin J Lambert
- Department of Physics, Lancaster University, Lancaster, LA1 4YB, UK.
| | - Chuancheng Jia
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-Scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, 38 Tongyan Road, Jinnan District, 300350, Tianjin, People's Republic of China.
| | - Xuefeng Guo
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-Scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, 38 Tongyan Road, Jinnan District, 300350, Tianjin, People's Republic of China.
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, 100871, Beijing, People's Republic of China.
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12
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Reimers JR, Li T, Birvé AP, Yang L, Aragonès AC, Fallon T, Kosov DS, Darwish N. Controlling piezoresistance in single molecules through the isomerisation of bullvalenes. Nat Commun 2023; 14:6089. [PMID: 37789027 PMCID: PMC10547723 DOI: 10.1038/s41467-023-41674-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Accepted: 09/06/2023] [Indexed: 10/05/2023] Open
Abstract
Nanoscale electro-mechanical systems (NEMS) displaying piezoresistance offer unique measurement opportunities at the sub-cellular level, in detectors and sensors, and in emerging generations of integrated electronic devices. Here, we show a single-molecule NEMS piezoresistor that operates utilising constitutional and conformational isomerisation of individual diaryl-bullvalene molecules and can be switched at 850 Hz. Observations are made using scanning tunnelling microscopy break junction (STMBJ) techniques to characterise piezoresistance, combined with blinking (current-time) experiments that follow single-molecule reactions in real time. A kinetic Monte Carlo methodology (KMC) is developed to simulate isomerisation on the experimental timescale, parameterised using density-functional theory (DFT) combined with non-equilibrium Green's function (NEGF) calculations. Results indicate that piezoresistance is controlled by both constitutional and conformational isomerisation, occurring at rates that are either fast (equilibrium) or slow (non-equilibrium) compared to the experimental timescale. Two different types of STMBJ traces are observed, one typical of traditional experiments that are interpreted in terms of intramolecular isomerisation occurring on stable tipped-shaped metal-contact junctions, and another attributed to arise from junction‒interface restructuring induced by bullvalene isomerisation.
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Affiliation(s)
- Jeffrey R Reimers
- International Centre for Quantum and Molecular Structures and the Department of Physics, Shanghai University, Shanghai, 200444, China.
- School of Mathematical and Physical Sciences, University of Technology Sydney, Sydney, NSW, 2007, Australia.
| | - Tiexin Li
- School of Molecular and Life Sciences, Curtin University, Bentley, WA, 6102, Australia
| | - André P Birvé
- School of Environmental and Life Sciences, University of Newcastle, Callaghan, NSW, 2308, Australia
| | - Likun Yang
- International Centre for Quantum and Molecular Structures and the Department of Physics, Shanghai University, Shanghai, 200444, China
| | - Albert C Aragonès
- Department of Materials Science and Physical Chemistry, University of Barcelona, Marti i Franquès 1, 08028, Barcelona, Catalonia, Spain
- Institute of Theoretical and Computational Chemistry, University of Barcelona, Diagonal 645, 08028, Barcelona, Catalonia, Spain
| | - Thomas Fallon
- School of Environmental and Life Sciences, University of Newcastle, Callaghan, NSW, 2308, Australia.
| | - Daniel S Kosov
- College of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia.
| | - Nadim Darwish
- School of Molecular and Life Sciences, Curtin University, Bentley, WA, 6102, Australia.
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13
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Lv J, Sun R, Yang Q, Gan P, Yu S, Tan Z. Research on Electric Field-Induced Catalysis Using Single-Molecule Electrical Measurement. Molecules 2023; 28:4968. [PMID: 37446629 DOI: 10.3390/molecules28134968] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2023] [Revised: 06/19/2023] [Accepted: 06/22/2023] [Indexed: 07/15/2023] Open
Abstract
The role of catalysis in controlling chemical reactions is crucial. As an important external stimulus regulatory tool, electric field (EF) catalysis enables further possibilities for chemical reaction regulation. To date, the regulation mechanism of electric fields and electrons on chemical reactions has been modeled. The electric field at the single-molecule electronic scale provides a powerful theoretical weapon to explore the dynamics of individual chemical reactions. The combination of electric fields and single-molecule electronic techniques not only uncovers new principles but also results in the regulation of chemical reactions at the single-molecule scale. This perspective focuses on the recent electric field-catalyzed, single-molecule chemical reactions and assembly, and highlights promising outlooks for future work in single-molecule catalysis.
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Affiliation(s)
- Jieyao Lv
- College of Chemistry and Chemical Engineering, Inner Mongolia University, Hohhot 010021, China
| | - Ruiqin Sun
- College of Chemistry and Chemical Engineering, Inner Mongolia University, Hohhot 010021, China
| | - Qifan Yang
- College of Chemistry and Chemical Engineering, Inner Mongolia University, Hohhot 010021, China
| | - Pengfei Gan
- College of Chemistry and Chemical Engineering, Inner Mongolia University, Hohhot 010021, China
| | - Shiyong Yu
- College of Chemistry and Chemical Engineering, Inner Mongolia University, Hohhot 010021, China
| | - Zhibing Tan
- College of Chemistry and Chemical Engineering, Inner Mongolia University, Hohhot 010021, China
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14
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Yang C, Li Y, Zhou S, Guo Y, Jia C, Liu Z, Houk KN, Dubi Y, Guo X. Real-time monitoring of reaction stereochemistry through single-molecule observations of chirality-induced spin selectivity. Nat Chem 2023:10.1038/s41557-023-01212-2. [PMID: 37188972 DOI: 10.1038/s41557-023-01212-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2022] [Accepted: 04/20/2023] [Indexed: 05/17/2023]
Abstract
Stereochemistry has an essential role in organic synthesis, biological catalysis and physical processes. In situ chirality identification and asymmetric synthesis are non-trivial tasks, especially for single-molecule systems. However, going beyond the chiral characterization of a large number of molecules (which inevitably leads to ensemble averaging) is crucial for elucidating the different properties induced by the chiral nature of the molecules. Here we report direct monitoring of chirality variations during a Michael addition followed by proton transfer and keto-enol tautomerism in a single molecule. Taking advantage of the chirality-induced spin selectivity effect, continuous current measurements through a single-molecule junction revealed in situ chirality variations during the reaction. Chirality identification at a high sensitivity level provides a promising tool for the study of symmetry-breaking reactions and sheds light on the origin of the chirality-induced spin selectivity effect itself.
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Affiliation(s)
- Chen Yang
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, People's Republic of China
| | - Yanwei Li
- Environment Research Institute, Shandong University, Qingdao, People's Republic of China
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, USA
| | - Shuyao Zhou
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, People's Republic of China
| | - Yilin Guo
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, People's Republic of China
| | - Chuancheng Jia
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, People's Republic of China
| | - Zhirong Liu
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, People's Republic of China
| | - Kendall N Houk
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, USA.
| | - Yonatan Dubi
- Department of Chemistry, Ben-Gurion University of the Negev, Be'er-Sheva, Israel.
| | - Xuefeng Guo
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, People's Republic of China.
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, People's Republic of China.
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15
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Dief EM, Low PJ, Díez-Pérez I, Darwish N. Advances in single-molecule junctions as tools for chemical and biochemical analysis. Nat Chem 2023; 15:600-614. [PMID: 37106094 DOI: 10.1038/s41557-023-01178-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2021] [Accepted: 03/02/2023] [Indexed: 04/29/2023]
Abstract
The development of miniaturized electronics has led to the design and construction of powerful experimental platforms capable of measuring electronic properties to the level of single molecules, along with new theoretical concepts to aid in the interpretation of the data. A new area of activity is now emerging concerned with repurposing the tools of molecular electronics for applications in chemical and biological analysis. Single-molecule junction techniques, such as the scanning tunnelling microscope break junction and related single-molecule circuit approaches have a remarkable capacity to transduce chemical information from individual molecules, sampled in real time, to electrical signals. In this Review, we discuss single-molecule junction approaches as emerging analytical tools for the chemical and biological sciences. We demonstrate how these analytical techniques are being extended to systems capable of probing chemical reaction mechanisms. We also examine how molecular junctions enable the detection of RNA, DNA, and traces of proteins in solution with limits of detection at the zeptomole level.
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Affiliation(s)
- Essam M Dief
- School of Molecular and Life Sciences, Curtin University, Bentley, Western Australia, Australia
| | - Paul J Low
- School of Molecular Sciences, University of Western Australia, Crawley, Western Australia, Australia
| | - Ismael Díez-Pérez
- Department of Chemistry, Faculty of Natural & Mathematical Sciences, King's College London, London, UK
| | - Nadim Darwish
- School of Molecular and Life Sciences, Curtin University, Bentley, Western Australia, Australia.
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16
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Gu MW, Chen CH. Effects of Electrode Materials on Electron Transport for Single-Molecule Junctions. Int J Mol Sci 2023; 24:ijms24087277. [PMID: 37108439 PMCID: PMC10139062 DOI: 10.3390/ijms24087277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Revised: 04/11/2023] [Accepted: 04/12/2023] [Indexed: 04/29/2023] Open
Abstract
The contact at the molecule-electrode interface is a key component for a range of molecule-based devices involving electron transport. An electrode-molecule-electrode configuration is a prototypical testbed for quantitatively studying the underlying physical chemistry. Rather than the molecular side of the interface, this review focuses on examples of electrode materials in the literature. The basic concepts and relevant experimental techniques are introduced.
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Affiliation(s)
- Mong-Wen Gu
- Department of Chemistry and Center for Emerging Materials and Advanced Devices, National Taiwan University, Taipei 10617, Taiwan
| | - Chun-Hsien Chen
- Department of Chemistry and Center for Emerging Materials and Advanced Devices, National Taiwan University, Taipei 10617, Taiwan
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17
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Yang C, Yang C, Guo Y, Feng J, Guo X. Graphene-molecule-graphene single-molecule junctions to detect electronic reactions at the molecular scale. Nat Protoc 2023:10.1038/s41596-023-00822-x. [PMID: 37045993 DOI: 10.1038/s41596-023-00822-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2022] [Accepted: 02/09/2023] [Indexed: 04/14/2023]
Abstract
The ability to measure the behavior of a single molecule during a reaction implies the detection of inherent dynamic and static disordered states, which may not be represented when measuring ensemble averages. Here, we describe the building of devices with graphene-molecule-graphene single-molecule junctions integrated into an electrical circuit. These devices are simple to build and are stable, showing tolerance to mechanical changes, solution environment and voltage stimulation. The design of a conductive channel based on a single molecule enables single-molecule detection and is sensitive to variations in physical properties and chemical structures of the detected molecules. The on-chip setup of single-molecule junctions further offers complementary metal-oxide-semiconductor (CMOS) compatibility, enabling logic functions in circuit elements, as well as deciphering of reaction intermediates. We detail the experimental procedure to prepare graphene transistor arrays as a basis for single-molecule junctions and the preparation of nanogapped carboxyl-terminal graphene electrodes by using electron-beam lithography and oxygen plasma etching. We describe the basic design of a molecular bridge with desired functions and terminals to form covalent bonds with electrode arrays, via a chemical reaction, to construct stably integrated single-molecule devices with a yield of 30-50% per chip. The immobilization of the single molecules is then characterized by using inelastic electron tunneling spectra, single-molecule imaging and fluorescent spectra. The whole protocol can be implemented within 2 weeks and requires users trained in using ultra-clean laboratory facilities and the aforementioned instrumentation.
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Affiliation(s)
- Chen Yang
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Centre, College of Chemistry and Molecular Engineering, Peking University, Beijing, People's Republic of China
| | - Caiyao Yang
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Centre, College of Chemistry and Molecular Engineering, Peking University, Beijing, People's Republic of China
| | - Yilin Guo
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Centre, College of Chemistry and Molecular Engineering, Peking University, Beijing, People's Republic of China
| | - Jianfei Feng
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Centre, College of Chemistry and Molecular Engineering, Peking University, Beijing, People's Republic of China
| | - Xuefeng Guo
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Centre, College of Chemistry and Molecular Engineering, Peking University, Beijing, People's Republic of China.
- Centre of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Centre for New Organic Matter, Tianjin Key Laboratory of Micro-scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, Tianjin, People's Republic of China.
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18
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Schmidt AF, Kurokhtina AA, Larina EV, Lagoda NA. Active Pd intermediates of the Suzuki-Miyaura reaction with low reactive aryl chlorides under “ligand-free” conditions. MOLECULAR CATALYSIS 2023. [DOI: 10.1016/j.mcat.2023.113101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/31/2023]
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19
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Guo Y, Yang C, Zhang L, Guo X. Tunable Interferometric Effects between Single-Molecule Suzuki-Miyaura Cross-Couplings. J Am Chem Soc 2023; 145:6577-6584. [PMID: 36916174 DOI: 10.1021/jacs.3c01108] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/15/2023]
Abstract
Parallel two molecular bridges loaded with a palladium catalyst were integrated into separate pairs of graphene electrodes in the same device. Based on the complete description of the one-palladium catalytic pathway by single-molecule electrical spectroscopy, this setup enables the mapping of the cross-correlation between different catalysts and demonstrates the emergent complexity in the extrapolation from single molecule to ensemble. The anticorrelation behaviors at the time scale of two individual catalysts in sufficiently close proximity were revealed in the Suzuki-Miyaura cross-coupling. Further experimental evidence demonstrates that the long-range electric dipole-dipole interaction induced by solvent leads to the destructive interferometric effect of two catalysts. In contrast, the cooperative coupling of the elementary step between two catalysts affords a local acceleration. This new form of reaction dynamics measurement via focusing on multiple molecules with single-event resolution holds great promise to build a bridge between single molecule and ensemble.
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Affiliation(s)
- Yilin Guo
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, Beijing 100871, P. R. China
| | - Chen Yang
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, Beijing 100871, P. R. China
| | - Lei Zhang
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, Beijing 100871, P. R. China
| | - Xuefeng Guo
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, Beijing 100871, P. R. China
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, College of Electronic Information and Optical Engineering, Nankai University, 38 Tongyan Road, Jinnan District, Tianjin 300350, P. R. China
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20
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Kinetic Aspects of Suzuki Cross-Coupling Using Ligandless Pd Nanoparticles Embedded in Aromatic Polymeric Matrix. Processes (Basel) 2023. [DOI: 10.3390/pr11030878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/17/2023] Open
Abstract
During the last decades, palladium nanoparticles (Pd(0) NPs) and Pd(II) compounds were shown to be attractive catalysts for fine organic synthesis. Nanostructured Pd(0) or Pd(II) catalysts have a relatively low environmental impact, but, at the same time, they are indispensable for such processes as Suzuki cross-coupling. This paper describes the preparation of Pd(0) or Pd(II) supported/embedded in hyper-cross-linked polystyrene (HPS) and compares their activity in Suzuki cross-coupling between phenylboronic acid and 4-bromoanisole. Obviously, the palladium charge (Pd(0) ↔ Pd(II)) changes continuously during the reaction catalytic cycle. It would seem that the use of the starting palladium in the form of Pd(0) or Pd(II) should not affect the reaction’s kinetic laws for both catalysts, but their special individuality is manifested between them. Nanoparticulate Pd(0) catalysts are stable during the reaction. In contrast, catalysts based on Pd(II) are extremely active in the initial period of the reaction, but then the “hot form” of the catalyst is rapidly converted into the form of Pd(0), whose activity is identical to that of the preliminarily reduced catalyst. This work discusses the possible nature of this phenomenon. A mathematical model for Suzuki cross-coupling reaction was suggested that was able to adequately describe experimental data. The level of reliability (R2) of the correlation between the experimental and calculated data was R2 = 0.97–0.99.
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21
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Yoo K, Fabig S, Grätz S, Borchardt L. The impact of the physical state and the reaction phase in the direct mechanocatalytic Suzuki-Miyaura coupling reaction. Faraday Discuss 2023; 241:206-216. [PMID: 36200472 DOI: 10.1039/d2fd00100d] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
The direct mechanocatalytic Suzuki-Miyaura coupling reaction, utilizing palladium milling balls as active catalysts, was investigated regarding the physical state of the reagents and the reaction phase. The substitution patterns and functional groups of different aryl iodides were varied and different boronic acid derivates were utilized to achieve a wide range of substrate combinations. In the neat grinding experiments, liquid aryl iodides were more reactive than solid ones and a steric influence of the substituents, especially pronounced in ortho compounds, was observed. In order to overcome the general low reactivity of the solid phase, several liquid-assisted grinding experiments were conducted and the influence of substrate solubility and catalyst wettability analyzed. Among all LAG additives, EtOH showed the greatest impact on the reactivity, as it converts boronic acid derivatives into liquid and reactive esters under mechanochemical conditions, significantly speeding up the reaction.
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Affiliation(s)
- Kwangho Yoo
- Inorganic Chemistry I, Ruhr-Universität Bochum, Universitätsstraße 150, 44801, Bochum, Germany.
| | - Sven Fabig
- Inorganic Chemistry I, Ruhr-Universität Bochum, Universitätsstraße 150, 44801, Bochum, Germany.
| | - Sven Grätz
- Inorganic Chemistry I, Ruhr-Universität Bochum, Universitätsstraße 150, 44801, Bochum, Germany.
| | - Lars Borchardt
- Inorganic Chemistry I, Ruhr-Universität Bochum, Universitätsstraße 150, 44801, Bochum, Germany.
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22
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Lv Y, Su J, Gu Y, Tian B, Ma J, Zuo JL, Ding M. Atomically Precise Integration of Multiple Functional Motifs in Catalytic Metal-Organic Frameworks for Highly Efficient Nitrate Electroreduction. JACS AU 2022; 2:2765-2777. [PMID: 36590266 PMCID: PMC9795565 DOI: 10.1021/jacsau.2c00502] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Revised: 11/06/2022] [Accepted: 11/07/2022] [Indexed: 06/09/2023]
Abstract
Ammonia production plays a central role in modern industry and agriculture with a continuous surge in its demand, yet the current industrial Haber-Bosch process suffers from low energy efficiency and accounts for high carbon emissions. Direct electrochemical conversion of nitrate to ammonia therefore emerges as an appealing approach with satisfactory sustainability while reducing the environmental impact from nitrate pollution. To this end, electrocatalysts for efficient conversion of eight-electron nitrate to ammonia require collective contributions at least from high-density reactive sites, selective reaction pathways, efficient multielectron transfer, and multiproton transport processes. Here, we report a catalytic metal-organic framework (two-dimensional (2D) In-MOF In8) catalyst integrated with multiple functional motifs with atomic precision, including uniformly dispersed, high-density, single-atom catalytic sites, high proton conductivity (efficient proton transport channel), high electron conductivity (promoted by the redox-active ligands), and confined microporous environments. These eventually lead to a direct and efficient electrochemical reduction of nitrate to ammonia and record high yield rate, FE, and selectivity for NH3 production. A novel "dynamic ligand dissociation" mechanism provides an unprecedented working principle that allows for the use of a high-quality MOF crystalline structure to function as highly ordered, high-density, single-atom catalyst (SAC)-like catalytic systems and ensures the maximum utilization of the metal centers within the MOF structure. Further, the atomically precise assembly of multiple functional motifs within a MOF catalyst offers an effective and facile strategy for the future development of framework-based enzyme-mimic systems.
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Affiliation(s)
- Yang Lv
- Key
Laboratory of Mesoscopic Chemistry, State Key Laboratory of Coordination
Chemistry, State Key Laboratory of Analytical Chemistry for Life Sciences,
School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Jian Su
- Key
Laboratory of Mesoscopic Chemistry, State Key Laboratory of Coordination
Chemistry, State Key Laboratory of Analytical Chemistry for Life Sciences,
School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
- School
of Chemistry and Chemical Engineering, Nanjing
University of Science and Technology, Nanjing 210094, Jiangsu, China
| | - Yuming Gu
- Key
Laboratory of Mesoscopic Chemistry, State Key Laboratory of Coordination
Chemistry, State Key Laboratory of Analytical Chemistry for Life Sciences,
School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
- Jiangsu
Key Laboratory of Advanced Organic Materials, School of Chemistry
and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Bailin Tian
- Key
Laboratory of Mesoscopic Chemistry, State Key Laboratory of Coordination
Chemistry, State Key Laboratory of Analytical Chemistry for Life Sciences,
School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Jing Ma
- Key
Laboratory of Mesoscopic Chemistry, State Key Laboratory of Coordination
Chemistry, State Key Laboratory of Analytical Chemistry for Life Sciences,
School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
- Jiangsu
Key Laboratory of Advanced Organic Materials, School of Chemistry
and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Jing-Lin Zuo
- Key
Laboratory of Mesoscopic Chemistry, State Key Laboratory of Coordination
Chemistry, State Key Laboratory of Analytical Chemistry for Life Sciences,
School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Mengning Ding
- Key
Laboratory of Mesoscopic Chemistry, State Key Laboratory of Coordination
Chemistry, State Key Laboratory of Analytical Chemistry for Life Sciences,
School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
- Beijing
National Laboratory for Molecular Sciences, Beijing 100190, China
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23
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Single-Molecule Chemical Reactions Unveiled in Molecular Junctions. Processes (Basel) 2022. [DOI: 10.3390/pr10122574] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2022] Open
Abstract
Understanding chemical processes at the single-molecule scale represents the ultimate limit of analytical chemistry. Single-molecule detection techniques allow one to reveal the detailed dynamics and kinetics of a chemical reaction with unprecedented accuracy. It has also enabled the discoveries of new reaction pathways or intermediates/transition states that are inaccessible in conventional ensemble experiments, which is critical to elucidating their intrinsic mechanisms. Thanks to the rapid development of single-molecule junction (SMJ) techniques, detecting chemical reactions via monitoring the electrical current through single molecules has received an increasing amount of attention and has witnessed tremendous advances in recent years. Research efforts in this direction have opened a new route for probing chemical and physical processes with single-molecule precision. This review presents detailed advancements in probing single-molecule chemical reactions using SMJ techniques. We specifically highlight recent progress in investigating electric-field-driven reactions, reaction dynamics and kinetics, host–guest interactions, and redox reactions of different molecular systems. Finally, we discuss the potential of single-molecule detection using SMJs across various future applications.
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24
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Guo Y, Yang C, Zhou S, Liu Z, Guo X. A Single-Molecule Memristor based on an Electric-Field-Driven Dynamical Structure Reconfiguration. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2022; 34:e2204827. [PMID: 35862243 DOI: 10.1002/adma.202204827] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2022] [Revised: 07/15/2022] [Indexed: 06/15/2023]
Abstract
A robust single-molecule memristor is prepared by covalently integrating one phenol molecule with multiple binding sites into nanogapped graphene electrodes. Multilevel resistance switching is realized by the electric-field-manipulated reconfiguration of the acyl moiety on the phenol center, that is, the Fries rearrangement. In situ measurements of the reaction trajectories with an initial single substrate and an intermediate break through the limitation of macroscopic experiments, therefore unveiling both intramolecular and intermolecular mechanistic pathways (a long-term controversy) as well as comprehensive dynamic information. Based on this advance, high-performance single-molecule memristors in both the solution and solid states are achieved successively, providing a new understanding of memristive systems and neural network computing.
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Affiliation(s)
- Yilin Guo
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, Beijing, 100871, P. R. China
| | - Chen Yang
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, Beijing, 100871, P. R. China
| | - Shuyao Zhou
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, Beijing, 100871, P. R. China
| | - Zhirong Liu
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, Beijing, 100871, P. R. China
| | - Xuefeng Guo
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, Beijing, 100871, P. R. China
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, College of Electronic Information and Optical Engineering, Nankai University, 38 Tongyan Road, Jinnan District, Tianjin, 300350, P. R. China
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25
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Precise electrical gating of the single-molecule Mizoroki-Heck reaction. Nat Commun 2022; 13:4552. [PMID: 35931699 PMCID: PMC9355990 DOI: 10.1038/s41467-022-32351-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2022] [Accepted: 07/21/2022] [Indexed: 11/08/2022] Open
Abstract
Precise tuning of chemical reactions with predictable and controllable manners, an ultimate goal chemists desire to achieve, is valuable in the scientific community. This tunability is necessary to understand and regulate chemical transformations at both macroscopic and single-molecule levels to meet demands in potential application scenarios. Herein, we realise accurate tuning of a single-molecule Mizoroki-Heck reaction via applying gate voltages as well as complete deciphering of its detailed intrinsic mechanism by employing an in-situ electrical single-molecule detection, which possesses the capability of single-event tracking. The Mizoroki-Heck reaction can be regulated in different dimensions with a constant catalyst molecule, including the molecular orbital gating of Pd(0) catalyst, the on/off switching of the Mizoroki-Heck reaction, the promotion of its turnover frequency, and the regulation of each elementary reaction within the Mizoroki-Heck catalytic cycle. These results extend the tuning scope of chemical reactions from the macroscopic view to the single-molecule approach, inspiring new insights into designing different strategies or devices to unveil reaction mechanisms and discover novel phenomena.
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26
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Zhang H, Xu W, Song K, Lu T, Zhang G, Zang Y, Hong W, Zhang D. Dual Modulation of Single Molecule Conductance via Tuning Side Chains and Electric Field with Conjugated Molecules Entailing Intramolecular O•••S Interactions. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2022; 9:e2105667. [PMID: 35434941 PMCID: PMC9189668 DOI: 10.1002/advs.202105667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Revised: 02/21/2022] [Indexed: 06/14/2023]
Abstract
Herein, single-molecule conductance studies of TBT1-TBT6 which entails 1,4-dithienylbenzene as the backbone and SMe groups as the anchoring units, with the scanning tunneling microscope break junction (STM-BJ) technique, are reported. The molecular conductance of TBT1 with intramolecular O•••S noncovalent interactions is enhanced by about one order of magnitude in comparison to their analogue TBT2 (which contains alkyl instead of alkoxy chains). By replacing the methoxy groups in TBT1 with extending alkoxy chains in TBT3, TBT4, and TBT5, the molecular backbones become twisted and as a consequence the single-molecule conductance decreases gradually, showing that the intramolecular O•••S noncovalent interaction is influenced by the structural features of alkoxy chains. More importantly, the single-molecule conductance of TBT3, TBT4, and TBT5 can be boosted by increasing the electric field applied to the molecular junctions. Remarkably, the conductance of TBT3, TBT4, and TBT5 can be reversibly modulated due to the conformational changes between twisted and planar ones by varying the electric field. These results demonstrate that molecules with intramolecular O•••S noncovalent interactions have the potential for in situ control of the electrical properties of molecular-scale devices.
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Affiliation(s)
- Hua Zhang
- Beijing National Laboratory for Molecular SciencesOrganic Solids LaboratoryInstitute of ChemistryChinese Academy of SciencesBeijing100190China
- School of Chemical SciencesUniversity of Chinese Academy of SciencesBeijing100049China
| | - Wei Xu
- State Key Laboratory of Physical Chemistry of Solid SurfacesCollege of Chemistry and Chemical EngineeringXiamen UniversityXiamen361005China
| | - Kai Song
- Beijing National Laboratory for Molecular SciencesOrganic Solids LaboratoryInstitute of ChemistryChinese Academy of SciencesBeijing100190China
| | - Taige Lu
- State Key Laboratory of Physical Chemistry of Solid SurfacesCollege of Chemistry and Chemical EngineeringXiamen UniversityXiamen361005China
| | - Guanxin Zhang
- Beijing National Laboratory for Molecular SciencesOrganic Solids LaboratoryInstitute of ChemistryChinese Academy of SciencesBeijing100190China
- School of Chemical SciencesUniversity of Chinese Academy of SciencesBeijing100049China
| | - Yaping Zang
- Beijing National Laboratory for Molecular SciencesOrganic Solids LaboratoryInstitute of ChemistryChinese Academy of SciencesBeijing100190China
- School of Chemical SciencesUniversity of Chinese Academy of SciencesBeijing100049China
| | - Wenjing Hong
- State Key Laboratory of Physical Chemistry of Solid SurfacesCollege of Chemistry and Chemical EngineeringXiamen UniversityXiamen361005China
| | - Deqing Zhang
- Beijing National Laboratory for Molecular SciencesOrganic Solids LaboratoryInstitute of ChemistryChinese Academy of SciencesBeijing100190China
- School of Chemical SciencesUniversity of Chinese Academy of SciencesBeijing100049China
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27
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Schmidt AF, Kurokhtina AA, Larina EV, Lagoda NA, Babenko TA. Homogeneous Catalysis of The Suzuki–Miyaura Reaction with Aryl Chlorides. RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY B 2022. [DOI: 10.1134/s1990793122030228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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28
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Xie X, Li P, Xu Y, Zhou L, Yan Y, Xie L, Jia C, Guo X. Single-Molecule Junction: A Reliable Platform for Monitoring Molecular Physical and Chemical Processes. ACS NANO 2022; 16:3476-3505. [PMID: 35179354 DOI: 10.1021/acsnano.1c11433] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Monitoring and manipulating the physical and chemical behavior of single molecules is an important development direction of molecular electronics that aids in understanding the molecular world at the single-molecule level. The electrical detection platform based on single-molecule junctions can monitor physical and chemical processes at the single-molecule level with a high temporal resolution, stability, and signal-to-noise ratio. Recently, the combination of single-molecule junctions with different multimodal control systems has been widely used to explore significant physical and chemical phenomena because of its powerful monitoring and control capabilities. In this review, we focus on the applications of single-molecule junctions in monitoring molecular physical and chemical processes. The methods developed for characterizing single-molecule charge transfer and spin characteristics as well as revealing the corresponding intrinsic mechanisms are introduced. Dynamic detection and regulation of single-molecule conformational isomerization, intermolecular interactions, and chemical reactions are also discussed in detail. In addition to these dynamic investigations, this review discusses the open challenges of single-molecule detection in the fields of physics and chemistry and proposes some potential applications in this field.
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Affiliation(s)
- Xinmiao Xie
- Center for Molecular Systems and Organic Devices (CMSOD), Key Laboratory for Organic Electronics and Information Displays and Institute of Advanced Materials (IAM), Nanjing University of Posts and Telecommunications, Nanjing 210023, PR China
| | - Peihui Li
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, 38 Tongyan Road, Jinnan District, Tianjin 300350, PR China
| | - Yanxia Xu
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, 38 Tongyan Road, Jinnan District, Tianjin 300350, PR China
| | - Li Zhou
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, 38 Tongyan Road, Jinnan District, Tianjin 300350, PR China
| | - Yong Yan
- Center for Molecular Systems and Organic Devices (CMSOD), Key Laboratory for Organic Electronics and Information Displays and Institute of Advanced Materials (IAM), Nanjing University of Posts and Telecommunications, Nanjing 210023, PR China
| | - Linghai Xie
- Center for Molecular Systems and Organic Devices (CMSOD), Key Laboratory for Organic Electronics and Information Displays and Institute of Advanced Materials (IAM), Nanjing University of Posts and Telecommunications, Nanjing 210023, PR China
| | - Chuancheng Jia
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, 38 Tongyan Road, Jinnan District, Tianjin 300350, PR China
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, Beijing 100871, PR China
| | - Xuefeng Guo
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, 38 Tongyan Road, Jinnan District, Tianjin 300350, PR China
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center, College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, Beijing 100871, PR China
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29
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DFT reveals the support effects in Pd nanoclusters over defect-ridden graphene for the oxidative addition of bromobenzene. MOLECULAR CATALYSIS 2022. [DOI: 10.1016/j.mcat.2022.112205] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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30
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Zhu X, Xu Y, Zhao C, Jia C, Guo X. Recent Advances in Photochemical Reactions on Single-Molecule Electrical Platforms. Macromol Rapid Commun 2022; 43:e2200017. [PMID: 35150177 DOI: 10.1002/marc.202200017] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2022] [Revised: 02/05/2022] [Indexed: 11/08/2022]
Abstract
The photochemical reaction is a very important type of chemical reactions. Visualizing and controlling photo-mediated reactions is a long-standing goal and challenge. In this regard, single-molecule electrical detection with label-free, real-time and in situ characteristics has unique advantages in monitoring the dynamic process of photoreactions at the single-molecule level. In this Review, we provide a valuable summary of the latest process of single-molecule photochemical reactions based on single-molecule electrical platforms. The single-molecule electrical detection platforms for monitoring photoreactions are displayed, including their fundamental principles, construction methods and practical applications. The single-molecule studies of two different types of light-mediated reactions are summarized as below: i) photo-induced reactions, including reversible cyclization, conformational isomerization and other photo-related reactions; ii) plasmon-mediated photoreactions, including reaction mechanisms and concrete examples, such as plasmon-induced photolysis of S-S/O-O bonds and tautomerization of porphycene. In addition, the prospects for future research directions and challenges in this field are also discussed. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Xin Zhu
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, 38 Tongyan Road, Jinnan District, Tianjin, 300350, P. R. China.,Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, Beijing, 100871, P. R. China
| | - Yanxia Xu
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, 38 Tongyan Road, Jinnan District, Tianjin, 300350, P. R. China
| | - Cong Zhao
- Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, Beijing, 100871, P. R. China
| | - Chuancheng Jia
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, 38 Tongyan Road, Jinnan District, Tianjin, 300350, P. R. China
| | - Xuefeng Guo
- Center of Single-Molecule Sciences, Institute of Modern Optics, Frontiers Science Center for New Organic Matter, Tianjin Key Laboratory of Micro-scale Optical Information Science and Technology, College of Electronic Information and Optical Engineering, Nankai University, 38 Tongyan Road, Jinnan District, Tianjin, 300350, P. R. China.,Beijing National Laboratory for Molecular Sciences, National Biomedical Imaging Center College of Chemistry and Molecular Engineering, Peking University, 292 Chengfu Road, Haidian District, Beijing, 100871, P. R. China
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Chen S, Su D, Jia C, Li Y, Li X, Guo X, Leigh DA, Zhang L. Real-time observation of the dynamics of an individual rotaxane molecular shuttle using a single-molecule junction. Chem 2022. [DOI: 10.1016/j.chempr.2021.11.012] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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32
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Zou Y, Wang D, Guo J, Yang J, Pu Y, Chen JF. Synthesis of poly(9,9-dioctylfluorene) in a rotating packed bed with enhanced performance for polymer light-emitting diode. Polym Chem 2022. [DOI: 10.1039/d2py00297c] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
One of the most suitable methods for synthesizing conjugated polymers is the Suzuki cross-coupling reaction because of high tolerance and stability. Herein, we report an improved strategy to synthesize conjugated...
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Xiao HX, Hsu WY, Liang SW, Guo Y, Lee WC, Lu IC, Chang YC. Bulky Di(1-adamantyl)phosphinous Acid-Ligated Pd(II) Precatalysts for Suzuki Reactions of Unreactive Aryl Chlorides. ACS OMEGA 2021; 6:35134-35143. [PMID: 34963994 PMCID: PMC8697604 DOI: 10.1021/acsomega.1c06430] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Accepted: 11/25/2021] [Indexed: 06/14/2023]
Abstract
Di(1-adamantyl)phosphine oxide (SPO-Ad: Ad2P(V)(=O)H), a stable tautomer of di(1-adamantyl)phosphinous acid (PA-Ad: Ad2P(III)-OH), was employed to synthesize two new PA-Ad-coordinated complexes, POPd-Ad and POPd2-Ad. POPd-Ad was easily transformed from POPd2-Ad in acetonitrile, and the [M - H]- ion of the deprotonated POPd-Ad was observed in the electrospray ionization-mass spectrum of POPd2-Ad. Both complexes are effective precatalysts for the Suzuki reaction of aryl chlorides. The reduction of Pd(II) in POPd-Ad and POPd2-Ad by arylboronic acid was examined, and the ideal Pd-to-PA ratio in the Suzuki reaction was found to be 1:1. The effect of temperature on the catalytic yields was studied to examine the possible ligation state of the active species and the dimer-to-monomer process of POPd2-Ad. Mononuclear and mono-ligated Pd species was assumed to be catalytically active. The electronic and steric effects of PA-Ad were slightly better than those reported for PA-tBu ( t Bu2P(III)-OH). Density functional theory calculations were performed to evaluate the formation of mono-ligated and mononuclear Pd species from POPd-Ad and POPd2-Ad. Furthermore, the reaction time and catalyst loading could be reduced for the reported POPd1-tBu precatalyst using the optimized reaction conditions for POPd-Ad. The complexes synthesized in this extensive study will complement the existing SPO-coordinated POPd series of precatalysts.
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Affiliation(s)
- He-Xin Xiao
- Department
of Applied Chemistry, Providence University, 200, Sec. 7, Taiwan Boulevard, Shalu
Dist., Taichung City 43301, Taiwan
| | - Wan-Yun Hsu
- Department
of Applied Chemistry, Providence University, 200, Sec. 7, Taiwan Boulevard, Shalu
Dist., Taichung City 43301, Taiwan
| | - Siou-Wei Liang
- Department
of Applied Chemistry, Providence University, 200, Sec. 7, Taiwan Boulevard, Shalu
Dist., Taichung City 43301, Taiwan
| | - Yingjie Guo
- Department
of Cosmetic Science, Providence University, 200, Sec. 7, Taiwan Boulevard, Shalu
Dist., Taichung City 43301, Taiwan
| | - Wan-Ching Lee
- Department
of Chemistry, National Chung Hsing University, 145 Xingda Rd., South Dist., Taichung City40227, Taiwan
| | - I-Chung Lu
- Department
of Chemistry, National Chung Hsing University, 145 Xingda Rd., South Dist., Taichung City40227, Taiwan
| | - Yu-Chang Chang
- Department
of Applied Chemistry, Providence University, 200, Sec. 7, Taiwan Boulevard, Shalu
Dist., Taichung City 43301, Taiwan
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34
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Reimers JR, Yang J, Darwish N, Kosov DS. Silicon - single molecule - silicon circuits. Chem Sci 2021; 12:15870-15881. [PMID: 35024111 PMCID: PMC8672724 DOI: 10.1039/d1sc04943g] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2021] [Accepted: 10/28/2021] [Indexed: 12/23/2022] Open
Abstract
In 2020, silicon - molecule - silicon junctions were fabricated and shown to be on average one third as conductive as traditional junctions made using gold electrodes, but in some instances to be even more conductive, and significantly 3 times more extendable and 5 times more mechanically stable. Herein, calculations are performed of single-molecule junction structure and conductivity pertaining to blinking and scanning-tunnelling-microscopy (STM) break junction (STMBJ) experiments performed using chemisorbed 1,6-hexanedithiol linkers. Some strikingly different characteristics are found compared to analogous junctions formed using the metals which, to date, have dominated the field of molecular electronics. In the STMBJ experiment, following retraction of the STM tip after collision with the substrate, unterminated silicon surface dangling bonds are predicted to remain after reaction of the fresh tips with the dithiol solute. These dangling bonds occupy the silicon band gap and are predicted to facilitate extraordinary single-molecule conductivity. Enhanced junction extendibility is attributed to junction flexibility and the translation of adsorbed molecules between silicon dangling bonds. The calculations investigate a range of junction atomic-structural models using density-functional-theory (DFT) calculations of structure, often explored at 300 K using molecular dynamics (MD) simulations. These are aided by DFT calculations of barriers for passivation reactions of the dangling bonds. Thermally averaged conductivities are then evaluated using non-equilibrium Green's function (NEGF) methods. Countless applications through electronics, nanotechnology, photonics, and sensing are envisaged for this technology.
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Affiliation(s)
- Jeffrey R Reimers
- International Centre for Quantum and Molecular Structures and School of Physics, Shanghai University Shanghai 200444 China
- School of Mathematical and Physical Sciences, University of Technology Sydney NSW 2007 Australia
| | - Junhao Yang
- International Centre for Quantum and Molecular Structures and School of Physics, Shanghai University Shanghai 200444 China
| | - Nadim Darwish
- School of Molecular and Life Sciences, Curtin Institute of Functional Molecules and Interfaces, Curtin University Bentley WA 6102 Australia
| | - Daniel S Kosov
- College of Science and Engineering, James Cook University Townsville QLD 4811 Australia
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35
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Affiliation(s)
- Nadim Darwish
- School of Molecular and Life Sciences, Curtin University, Bentley, Western Australia, Australia.
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36
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Çakır S, Kavukcu SB, Karabıyık H, Rethinam S, Türkmen H. C(acyl)–C(sp 2) and C(sp 2)–C(sp 2) Suzuki–Miyaura cross-coupling reactions using nitrile-functionalized NHC palladium complexes. RSC Adv 2021; 11:37684-37699. [PMID: 35498080 PMCID: PMC9043785 DOI: 10.1039/d1ra07231e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Accepted: 11/08/2021] [Indexed: 11/21/2022] Open
Abstract
Application of N-heterocyclic carbene (NHC) palladium complexes has been successful for the modulation of C–C coupling reactions. For this purpose, a series of azolium salts (1a–f) including benzothiazolium, benzimidazolium, and imidazolium, bearing a CN-substituted benzyl moiety, and their (NHC)2PdBr2 (2a–c) and PEPPSI-type palladium (3b–f) complexes have been systematically prepared to catalyse acylative Suzuki–Miyaura coupling reaction of acyl chlorides with arylboronic acids to form benzophenone derivatives in the presence of potassium carbonate as a base and to catalyse the traditional Suzuki–Miyaura coupling reaction of bromobenzene with arylboronic acids to form biaryls. All the synthesized compounds were fully characterized by Fourier Transform Infrared (FTIR), and 1H and 13C NMR spectroscopies. X-ray diffraction studies on single crystals of 3c, 3e and 3f prove the square planar geometry. Scanning Electron Microscopy (SEM), energy dispersive X-ray spectroscopy (EDS), metal mapping analyses and thermal gravimetric analysis (TGA) were performed to get further insights into the mechanism of the Suzuki–Miyaura cross coupling reactions. Mechanistic studies have revealed that the stability and coordination of the complexes by the CN group are achieved by the removal of pyridine from the complex in catalytic cycles. The presence of the CN group in the (NHC)Pd complexes significantly increased the catalytic activities for both reactions. Nitrile-functionalized Pd(ii) complexes have evaluated for the Suzuki–Miyaura cross-coupling reactions. The highest TON value was reached for the acylative Suzuki–Miyaura cross-coupling reaction of acyl chlorides with phenylboronic acids.![]()
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Affiliation(s)
- Sinem Çakır
- Department of Chemistry, Ege University, 35100 Bornova, Izmir, Turkey
| | | | - Hande Karabıyık
- Department of Physics, Faculty of Science and Art, Dokuz Eylül University, Izmir, Turkey
| | - Senthil Rethinam
- School of Natural and Applied Science, Ege University, Bornova, Izmir, 35100, Turkey
- School of Bio & Chemical Engineering, Sathyabama University, Chennai, 600 199, Tamilnadu, India
| | - Hayati Türkmen
- Department of Chemistry, Ege University, 35100 Bornova, Izmir, Turkey
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