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Tihanyi B, Samu L, Koncz I, Hergott K, Medgyesi P, Pálfi G, Szabó KÁ, Kis L, Marcsik A, Molnár E, Spekker O. A glimpse into the past of Hansen's disease - Re-evaluation and comparative analysis of cases with leprosy from the Avar period of the Trans-Tisza region, Hungary. Tuberculosis (Edinb) 2024; 148:102552. [PMID: 39142093 DOI: 10.1016/j.tube.2024.102552] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Revised: 07/26/2024] [Accepted: 07/30/2024] [Indexed: 08/16/2024]
Abstract
Our knowledge of how society viewed leprosy and treated its victims in the past is still scarce, especially in geographical regions and archaeological periods from where no written sources are available. To fill in some research gaps, we provide the comparative analysis of five previously described, probable cases with leprosy from the Avar-period Trans-Tisza region (Hungary). The five skeletons were subject to a detailed macromorphological (re-)evaluation. Where possible, the biological and social consequences of having leprosy were reconstructed based on the observed bony changes and mortuary treatment, respectively. The retrospective, macromorphology-based diagnosis of leprosy could be established in three cases only. Based on the detected skeletal lesions, all of them suffered from near-lepromatous or lepromatous leprosy. The disease resulted in aesthetic repercussions and functional implications, which would have been disadvantageous for these individuals, and limited or changed their possibilities to participate in social situations. They could have even required heavy time investment from their respective communities. The analysis of the mortuary treatment of the confirmed leprosy cases revealed no evidence of a social stigma. These findings indicate that the afflicted have not been systematically expulsed or segregated, at least in death, in the Early Middle Ages of the Carpathian Basin.
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Affiliation(s)
- Balázs Tihanyi
- Department of Biological Anthropology, University of Szeged, Közép fasor 52, H-6726, Szeged, Hungary; Department of Archaeogenetics, Institute of Hungarian Research, Úri utca 54-56, H-1014, Budapest, Hungary.
| | - Levente Samu
- Institute of Archaeological Sciences, Eötvös Loránd University, Múzeum körút 4/B, H-1088, Budapest, Hungary.
| | - István Koncz
- Institute of Archaeological Sciences, Eötvös Loránd University, Múzeum körút 4/B, H-1088, Budapest, Hungary.
| | - Kristóf Hergott
- Koszta József Museum, Kossuth tér 1, H-6600, Szentes, Hungary; Department of Archaeology, University of Szeged, Egyetem utca 2, H-6722, Szeged, Hungary.
| | - Pál Medgyesi
- Munkácsy Mihály Museum, Széchenyi utca 9, H-5600, Békéscsaba, Hungary.
| | - György Pálfi
- Department of Biological Anthropology, University of Szeged, Közép fasor 52, H-6726, Szeged, Hungary.
| | - Krisztina Ágnes Szabó
- Department of Art and Art History, University of Szeged, Brüsszeli körút 37, H-6723, Szeged, Hungary.
| | - Luca Kis
- Department of Biological Anthropology, University of Szeged, Közép fasor 52, H-6726, Szeged, Hungary; Department of Archaeogenetics, Institute of Hungarian Research, Úri utca 54-56, H-1014, Budapest, Hungary.
| | - Antónia Marcsik
- Department of Biological Anthropology, University of Szeged, Közép fasor 52, H-6726, Szeged, Hungary.
| | - Erika Molnár
- Department of Biological Anthropology, University of Szeged, Közép fasor 52, H-6726, Szeged, Hungary.
| | - Olga Spekker
- Department of Biological Anthropology, University of Szeged, Közép fasor 52, H-6726, Szeged, Hungary; Institute of Archaeological Sciences, Eötvös Loránd University, Múzeum körút 4/B, H-1088, Budapest, Hungary; Ancient and Modern Human Genomics Competence Centre, University of Szeged, Közép fasor 52, H-6726, Szeged, Hungary.
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Alaçamlı E, Naidoo T, Güler MN, Sağlıcan E, Aktürk Ş, Mapelli I, Vural KB, Somel M, Malmström H, Günther T. READv2: advanced and user-friendly detection of biological relatedness in archaeogenomics. Genome Biol 2024; 25:216. [PMID: 39135108 PMCID: PMC11318251 DOI: 10.1186/s13059-024-03350-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2024] [Accepted: 07/24/2024] [Indexed: 08/16/2024] Open
Abstract
The advent of genome-wide ancient DNA analysis has revolutionized our understanding of prehistoric societies. However, studying biological relatedness in these groups requires tailored approaches due to the challenges of analyzing ancient DNA. READv2, an optimized Python3 implementation of the most widely used tool for this purpose, addresses these challenges while surpassing its predecessor in speed and accuracy. For sufficient amounts of data, it can classify up to third-degree relatedness and differentiate between the two types of first-degree relatedness, full siblings and parent-offspring. READv2 enables user-friendly, efficient, and nuanced analysis of biological relatedness, facilitating a deeper understanding of past social structures.
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Affiliation(s)
- Erkin Alaçamlı
- Human Evolution, Department of Organismal Biology, Uppsala University, Uppsala, Sweden
- Present Address: Estonian Biocentre, Institute of Genomics, University of Tartu, Tartu, Estonia
| | - Thijessen Naidoo
- Ancient DNA Unit, Science for Life Laboratory, Department of Archaeology and Classical Studies, Stockholm University, Stockholm, Sweden
- Centre for Palaeogenetics, Stockholm, Sweden
| | - Merve N Güler
- Department of Health Informatics, Graduate School of Informatics, Middle East Technical University, Ankara, Turkey
| | - Ekin Sağlıcan
- Department of Biological Sciences, Middle East Technical University, Ankara, Turkey
| | - Şevval Aktürk
- Department of Bioinformatics, Graduate School of Health Sciences, Hacettepe University, Ankara, Turkey
| | - Igor Mapelli
- Department of Biological Sciences, Middle East Technical University, Ankara, Turkey
| | - Kıvılcım Başak Vural
- Department of Biological Sciences, Middle East Technical University, Ankara, Turkey
| | - Mehmet Somel
- Department of Biological Sciences, Middle East Technical University, Ankara, Turkey
| | - Helena Malmström
- Human Evolution, Department of Organismal Biology, Uppsala University, Uppsala, Sweden.
| | - Torsten Günther
- Human Evolution, Department of Organismal Biology, Uppsala University, Uppsala, Sweden.
- Ancient DNA Unit, Science for Life Laboratory, Department of Organismal Biology, Uppsala University, Uppsala, Sweden.
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Gyuris B, Vyazov L, Türk A, Flegontov P, Szeifert B, Langó P, Mende BG, Csáky V, Chizhevskiy AA, Gazimzyanov IR, Khokhlov AA, Kolonskikh AG, Matveeva NP, Ruslanova RR, Rykun MP, Sitdikov A, Volkova EV, Botalov SG, Bugrov DG, Grudochko IV, Komar O, Krasnoperov AA, Poshekhonova OE, Chikunova I, Sungatov F, Stashenkov DA, Zubov S, Zelenkov AS, Ringbauer H, Cheronet O, Pinhasi R, Akbari A, Rohland N, Mallick S, Reich D, Szécsényi-Nagy A. Long shared haplotypes identify the Southern Urals as a primary source for the 10th century Hungarians. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.07.21.599526. [PMID: 39091721 PMCID: PMC11291037 DOI: 10.1101/2024.07.21.599526] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 08/04/2024]
Abstract
During the Hungarian Conquest in the 10th century CE, the early medieval Magyars, a group of mounted warriors from Eastern Europe, settled in the Carpathian Basin. They likely introduced the Hungarian language to this new settlement area, during an event documented by both written sources and archaeological evidence. Previous archaeogenetic research identified the newcomers as migrants from the Eurasian steppe. However, genome-wide ancient DNA from putative source populations has not been available to test alternative theories of their precise source. We generated genome-wide ancient DNA data for 131 individuals from candidate archaeological contexts in the Circum-Uralic region in present-day Russia. Our results tightly link the Magyars to people of the Early Medieval Karayakupovo archaeological horizon on both the European and Asian sides of the southern Urals. Our analyes show that ancestors of the people of the Karayakupovo archaeological horizon were established in the Southern Urals by the Iron Age and that their descendants persisted locally in the Volga-Kama region until at least the 14th century.
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Affiliation(s)
- Balázs Gyuris
- Institute of Archaeogenomics, HUN-REN Research Centre for the Humanities; Budapest, Hungary
- Doctoral School of Biology, ELTE Eötvös Loránd University; Budapest, Hungary
| | - Leonid Vyazov
- Department of Biology and Ecology, Faculty of Science, University of Ostrava; Ostrava, Czechia
- Department of Human Evolutionary Biology, Harvard University; Cambridge, MA, USA
| | - Attila Türk
- Department of Archaeology, Faculty of Humanities and Social Sciences, Pázmány Péter Catholic University; Budapest, Hungary
- Hungarian Prehistory Research group, HUN-REN Research Centre for the Humanities; Budapest, Hungary
| | - Pavel Flegontov
- Department of Biology and Ecology, Faculty of Science, University of Ostrava; Ostrava, Czechia
- Department of Human Evolutionary Biology, Harvard University; Cambridge, MA, USA
| | - Bea Szeifert
- Institute of Archaeogenomics, HUN-REN Research Centre for the Humanities; Budapest, Hungary
| | - Péter Langó
- Institute of Archaeology, HUN-REN Research Centre for the Humanities, Hungarian Research Network (HUN-REN); Budapest, Hungary
- Department of Archaeology, Faculty of Humanities and Social Sciences, Pázmány Péter Catholic University; Budapest, Hungary
| | - Balázs Gusztáv Mende
- Institute of Archaeogenomics, HUN-REN Research Centre for the Humanities; Budapest, Hungary
| | - Veronika Csáky
- Institute of Archaeogenomics, HUN-REN Research Centre for the Humanities; Budapest, Hungary
| | - Andrey A Chizhevskiy
- Institute of Archaeology of the Academy of Sciences of the Republic of Tatarstan; Kazan, Republic of Tatarstan, Russia
| | | | | | - Aleksandr G Kolonskikh
- R.G. Kuzeev Institute of Ethnological Studies, Ufa Federal Research Scientific Center of Russian Academy of Sciences; Ufa, Republic of Bashkortostan, Russia
| | | | - Rida R Ruslanova
- National Museum of the Republic of Bashkortostan; Ufa, Republic of Bashkortostan, Russia
| | | | - Ayrat Sitdikov
- Institute of Archaeology of the Academy of Sciences of the Republic of Tatarstan; Kazan, Republic of Tatarstan, Russia
- Department of Archaeology, Kazan Federal University, Kazan, Republic of Tatarstan, Russia
| | - Elizaveta V Volkova
- Institute of Archaeology of the Academy of Sciences of the Republic of Tatarstan; Kazan, Republic of Tatarstan, Russia
| | - Sergei G Botalov
- South Ural Branch of the Institute of History and Archeology, Ural Branch of the Russian Academy of Sciences; Chelyabinsk, Russia
| | - Dmitriy G Bugrov
- National Museum of Tatarstan Republic; Kazan, Republic of Tatarstan, Russia
| | - Ivan V Grudochko
- South Ural Branch of the Institute of History and Archeology, Ural Branch of the Russian Academy of Sciences; Chelyabinsk, Russia
| | - Oleksii Komar
- Institute of Archaeology, National Academy of Sciences of Ukraine; Kyiv, Ukraine
| | - Alexander A Krasnoperov
- Udmurt Institute of History, Language and Literature, Udmurt Federal Research Center, Ural Branch of the Russian Academy of Sciences; Izhevsk, Udmurt Republic, Russia
| | - Olga E Poshekhonova
- Institute of the Problems of Northern Development, Tyumen Scientific Centre, Siberian Branch of the Russian Academy of Sciences; Tyumen, Russia
| | - Irina Chikunova
- Institute of the Problems of Northern Development, Tyumen Scientific Centre, Siberian Branch of the Russian Academy of Sciences; Tyumen, Russia
| | - Flarit Sungatov
- Institute of History, Language and Literature, Ufa Federal Research Scientific Center of Russian Academy of Sciences; Ufa, Republic of Bashkortostan, Russia
| | - Dmitrii A Stashenkov
- Samara Regional Museum of History and Local Lore named after P. V. Alabin; Samara, Russia
| | - Sergei Zubov
- Research Laboratory of Archeology, Samara National Research University; Samara, Russia
| | | | - Harald Ringbauer
- Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology; Leipzig, Germany
| | - Olivia Cheronet
- Department of Evolutionary Anthropology, University of Vienna; Vienna, Austria
| | - Ron Pinhasi
- Department of Evolutionary Anthropology, University of Vienna; Vienna, Austria
| | - Ali Akbari
- Department of Genetics, Harvard Medical School; Boston, MA 02138, USA
- Broad Institute of MIT and Harvard; Cambridge, MA 02142, USA
| | - Nadin Rohland
- Department of Genetics, Harvard Medical School; Boston, MA 02138, USA
- Broad Institute of MIT and Harvard; Cambridge, MA 02142, USA
| | - Swapan Mallick
- Department of Genetics, Harvard Medical School; Boston, MA 02138, USA
- Broad Institute of MIT and Harvard; Cambridge, MA 02142, USA
- Howard Hughes Medical Institute; Boston, MA 02138, USA
| | - David Reich
- Department of Human Evolutionary Biology, Harvard University; Cambridge, MA, USA
- Department of Genetics, Harvard Medical School; Boston, MA 02138, USA
- Broad Institute of MIT and Harvard; Cambridge, MA 02142, USA
- Howard Hughes Medical Institute; Boston, MA 02138, USA
| | - Anna Szécsényi-Nagy
- Institute of Archaeogenomics, HUN-REN Research Centre for the Humanities; Budapest, Hungary
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Wang M, Chen H, Luo L, Huang Y, Duan S, Yuan H, Tang R, Liu C, He G. Forensic investigative genetic genealogy: expanding pedigree tracing and genetic inquiry in the genomic era. J Genet Genomics 2024:S1673-8527(24)00158-9. [PMID: 38969261 DOI: 10.1016/j.jgg.2024.06.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2024] [Revised: 06/23/2024] [Accepted: 06/24/2024] [Indexed: 07/07/2024]
Abstract
Genetic genealogy provides crucial insights into the complex biological relationships within contemporary and ancient human populations by analyzing shared alleles and chromosomal segments that are identical by descent to understand kinship, migration patterns, and population dynamics. Within forensic science, forensic investigative genetic genealogy (FIGG) has gained prominence by leveraging next-generation sequencing technologies and population-specific genomic resources, opening new investigative avenues. In this review, we synthesize current knowledge, underscore recent advancements, and discuss the growing role of FIGG in forensic genomics. FIGG has been pivotal in revitalizing dormant inquiries and offering new genetic leads in numerous cold cases. Its effectiveness relies on the extensive single-nucleotide polymorphism profiles contributed by individuals from diverse populations to specialized genomic databases. Advances in computational genomics and the growth of human genomic databases have spurred a profound shift in the application of genetic genealogy across forensics, anthropology, and ancient DNA studies. As the field progresses, FIGG is evolving from a nascent practice into a more sophisticated and specialized discipline, shaping the future of forensic investigations.
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Affiliation(s)
- Mengge Wang
- Institute of Rare Diseases, West China Hospital of Sichuan University, Sichuan University, Chengdu, Sichuan 610041, China; Center for Archaeological Science, Sichuan University, Chengdu, Sichuan 610041, China; Anti-Drug Technology Center of Guangdong Province, Guangzhou, Guangdong 510000, China.
| | - Hongyu Chen
- Institute of Rare Diseases, West China Hospital of Sichuan University, Sichuan University, Chengdu, Sichuan 610041, China; Center for Archaeological Science, Sichuan University, Chengdu, Sichuan 610041, China; Department of Forensic Medicine, College of Basic Medicine, Chongqing Medical University, Chongqing 400016, China
| | - Lintao Luo
- Institute of Rare Diseases, West China Hospital of Sichuan University, Sichuan University, Chengdu, Sichuan 610041, China; Center for Archaeological Science, Sichuan University, Chengdu, Sichuan 610041, China; Department of Forensic Medicine, College of Basic Medicine, Chongqing Medical University, Chongqing 400016, China
| | - Yuguo Huang
- Institute of Rare Diseases, West China Hospital of Sichuan University, Sichuan University, Chengdu, Sichuan 610041, China; Center for Archaeological Science, Sichuan University, Chengdu, Sichuan 610041, China
| | - Shuhan Duan
- Institute of Rare Diseases, West China Hospital of Sichuan University, Sichuan University, Chengdu, Sichuan 610041, China
| | - Huijun Yuan
- Institute of Rare Diseases, West China Hospital of Sichuan University, Sichuan University, Chengdu, Sichuan 610041, China; Center for Archaeological Science, Sichuan University, Chengdu, Sichuan 610041, China.
| | - Renkuan Tang
- Department of Forensic Medicine, College of Basic Medicine, Chongqing Medical University, Chongqing 400016, China.
| | - Chao Liu
- Anti-Drug Technology Center of Guangdong Province, Guangzhou, Guangdong 510000, China.
| | - Guanglin He
- Institute of Rare Diseases, West China Hospital of Sichuan University, Sichuan University, Chengdu, Sichuan 610041, China; Center for Archaeological Science, Sichuan University, Chengdu, Sichuan 610041, China; Anti-Drug Technology Center of Guangdong Province, Guangzhou, Guangdong 510000, China.
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Cassidy LM. Ancient DNA traces family lines and political shifts in the Avar empire. Nature 2024; 629:287-288. [PMID: 38658715 DOI: 10.1038/d41586-024-01020-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
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Eisenstein M. DNA from ancient graves reveals the culture of a mysterious nomadic people. Nature 2024:10.1038/d41586-024-01165-7. [PMID: 38658728 DOI: 10.1038/d41586-024-01165-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
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