High-speed, high-frequency ultrasound, in utero vector-flow imaging of mouse embryos

Longitudinal in Utero Analysis of Engrailed-1 Knockout Mouse Embryonic Phenotypes Using High-Frequency Ultrasound

Large-scale international efforts to generate and analyze loss-of-function mutations in each of the approximately 20,000 protein-encoding gene mutations are ongoing using the "knockout" mouse as a model organism. Because one-third of gene knockouts are expected to result in embryonic lethality, it is important to develop non-invasive in utero imaging methods to detect and monitor mutant phenotypes in mouse embryos. We describe the utility of 3-D high-frequency (40-MHz) ultrasound (HFU) for longitudinal in utero imaging of mouse embryos between embryonic days (E) 11.5 and E14.5, which represent critical stages of brain and organ development. Engrailed-1 knockout (En1-ko) mouse embryos and their normal control littermates were imaged with HFU in 3-D, enabling visualization of morphological phenotypes in the developing brains, limbs and heads of the En1-ko embryos. Recently developed deep learning approaches were used to automatically segment the embryonic brain ventricles and bodies from the 3-D HFU images, allowing quantitative volumetric analyses of the En1-ko brain phenotypes. Taken together, these results show great promise for the application of longitudinal 3-D HFU to analyze knockout mouse embryos in utero.

Accelerated 2-D Real-Time Refraction-Corrected Transcranial Ultrasound Imaging

In a recent study, we proposed a technique to correct aberration caused by the skull and reconstruct a transcranial B-mode image with a refraction-corrected synthetic aperture imaging (SAI) scheme. Given a sound speed map, the arrival times were calculated using a fast marching technique (FMT), which solves the Eikonal equation and, therefore, is computationally expensive for real-time imaging. In this article, we introduce a two-point ray tracing method, based on Fermat's principle, for fast calculation of the travel times in the presence of a layered aberrator in front of the ultrasound probe. The ray tracing method along with the reconstruction technique is implemented on a graphical processing unite (GPU). The point spread function (PSF) in a wire phantom image reconstructed with the FMT and the GPU implementation was studied with numerical synthetic data and experiments with a bone-mimicking plate and a sagittally cut human skull. The numerical analysis showed that the error on travel times is less than 10% of the ultrasound temporal period at 2.5 MHz. As a result, the lateral resolution was not significantly degraded compared with images reconstructed with FMT-calculated travel times. The results using the synthetic, bone-mimicking plate, and skull dataset showed that the GPU implementation causes a lateral/axial localization error of 0.10/0.20, 0.15/0.13, and 0.26/0.32 mm compared with a reference measurement (no aberrator in front of the ultrasound probe), respectively. For an imaging depth of 70 mm, the proposed GPU implementation allows reconstructing 19 frames/s with full synthetic aperture (96 transmission events) and 32 frames/s with multiangle plane wave imaging schemes (with 11 steering angles) for a pixel size of [Formula: see text]. Finally, refraction-corrected power Doppler imaging is demonstrated with a string phantom and a bone-mimicking plate placed between the probe and the moving string. The proposed approach achieves a suitable frame rate for clinical scanning while maintaining the image quality.

Characterization of Vortex Flow in a Mouse Model of Ventricular Dyssynchrony by Plane-Wave Ultrasound Using Hexplex Processing

The rodent heart is frequently used to study human cardiovascular disease (CVD). Although advanced cardiovascular ultrasound imaging methods are available for human clinical practice, application of these techniques to small animals remains limited due to the temporal and spatial-resolution demands. Here, an ultrasound vector-flow workflow is demonstrated that enables visualization and quantification of the complex hemodynamics within the mouse heart. Wild type (WT) and fibroblast growth factor homologous factor 2 (FHF2)-deficient mice (Fhf2 ^KO/Y ), which present with hyperthermia-induced ECG abnormalities highly reminiscent of Brugada syndrome, were used as a mouse model of human CVD. An 18-MHz linear array was used to acquire high-speed (30 kHz), plane-wave data of the left ventricle (LV) while increasing core body temperature up to 41.5 °C. Hexplex (i.e., six output) processing of the raw data sets produced the output of vector-flow estimates (magnitude and phase); B-mode and color-Doppler images; Doppler spectrograms; and local time histories of vorticity and pericardium motion. Fhf2 ^WT/Y mice had repeatable beat-to-beat cardiac function, including vortex formation during diastole, at all temperatures. In contrast, Fhf2 ^KO/Y mice displayed dyssynchronous contractile motion that disrupted normal inflow vortex formation and impaired LV filling as temperature rose. The hexplex processing approach demonstrates the ability to visualize and quantify the interplay between hemodynamic and mechanical function in a mouse model of human CVD.

40-MHz high-frequency vector Doppler imaging for superficial venous valve flow estimation

PURPOSE

Doppler ultrasound imaging has been used widely for diagnosing vascular diseases. Recently, vector Doppler imaging (VDI) has been proposed for visualizing the blood flow in all directions to yield more detailed information for estimating flow conditions. Increasing the resolution of VDI is important for the structural mapping of superficial vessels with microstructure. However, VDI that operates under a high-frequency ultrasound (HFUS; >30 MHz) is rare. In this study, a 40-MHz high-frequency VDI (HFVDI) based on ultrafast ultrasound imaging was developed to obtain the vector information of blood flow around the superficial venous valve.

METHODS

The use of HFUS imaging system causes an overload of data acquisition easily. In order to provide sufficient recording time, the frame rate should be reduced. Because the aliasing problem worsens due to a low frame rate when operating Doppler imaging, phase-unwrapping processing methods based on spatial and temporal continuities were applied. Flow phantom experiments were performed to validate the accuracy. In vivo experiments were performed on the valve of superficial veins of healthy volunteers.

RESULTS

The experimental results from the phantom study indicated that the error of velocity estimation was <10% in most cases. Dynamic changes of valve movements and flow conditions (including velocity profiles and vector) were observed. Because of the high resolution of HFVDI, the jet and vortex phenomena were observed between the leaflets and in the sinus pocket, respectively.

CONCLUSIONS

Flow velocities ranging from 2 to 15 mm/s were measured at different locations around the venous valve during the opening and closing phases. All the results indicated that HFVDI has the potential to be a useful tool for vessel duplex scanning.

Three-dimensional label-free imaging of mammalian yolk sac vascular remodeling with optical resolution photoacoustic microscopy

Vessel development in the yolk sac is important for the embryo development and the malfunction of which can lead to cardiac dysfunction, embryonic malformation and miscarriage. Although substantial emphasis has been placed on the yolk sac vascular remodeling, no detailed three-dimensional (3D) imaging and quantitative analysis of this process has been described. Herein, we explored the development of the vascular system in the visceral yolk sac (VYS) on E11.5, E12.5 and E13.5 mouse embryos using a home-built large field-of-view (FOV) optical-resolution photoacoustic microscopy (OR-PAM). The results showed that OR-PAM can be used as a label-free imaging tool for studying the 2D/3D morphology changes of the vascular system during organogenesis. In addition, after a quantitative analysis the results showed that the microvascular density in the VYS gradually reduced along with the embryo growth. Vascular density in the VYS of E11.5 mouse embryos was almost 6-fold than that of E13.5. Hovever, the averaged vessel diameter of the entire VYS membrane increased gradually with the development of embryos. This study suggests that OR-PAM is a potential tool for acquiring the hemodynamic parameters of mammalian embryos, which could be further used for studying diseases related with the vascular remodeling such as vascular malformations and heart defects.

Live Ultrasound Color-Encoded Speckle Imaging Platform for Real-Time Complex Flow Visualization In Vivo

Complex flow patterns are prevalent in the vasculature, but they are difficult to image noninvasively in real time. This paper presents the first real-time scanning platform for a high-frame-rate ultrasound technique called color-encoded speckle imaging (CESI) and its use in visualizing arterial flow dynamics in vivo. CESI works by simultaneously rendering flow speckles and color-coded flow velocity estimates on a time-resolved basis. Its live implementation was achieved by integrating a 192-channel programmable ultrasound front-end module, a 4.8-GB/s capacity data streaming link, and a series of computing kernels implemented on the graphical processing unit (GPU) for beamforming and Doppler processing. A slow-motion replay mode was also included to offer coherent visualization of CESI frames acquired at high frame rate [3000 frames per second (fps) in our experiments]. The live CESI scanning platform was found to be effective in facilitating real-time image guidance (at least 20 fps for live video display with 55-fps GPU processing throughout). In vivo pilot trials also showed that live CESI, when running in replay mode, can temporally resolve triphasic flow at the brachial bifurcation and can reveal flow dynamics in the brachial vein during a fist-clenching maneuver. Overall, live CESI has potential for use in routine investigations in vivo that seek to identify complex flow dynamics in real time and relate these dynamics to vascular physiology.