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Coronado S, Herrera J, Pino MG, Martín S, Ballesteros-Rueda L, Cea P. Advancements in Engineering Planar Model Cell Membranes: Current Techniques, Applications, and Future Perspectives. NANOMATERIALS (BASEL, SWITZERLAND) 2024; 14:1489. [PMID: 39330645 PMCID: PMC11434481 DOI: 10.3390/nano14181489] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2024] [Revised: 08/28/2024] [Accepted: 09/05/2024] [Indexed: 09/28/2024]
Abstract
Cell membranes are crucial elements in living organisms, serving as protective barriers and providing structural support for cells. They regulate numerous exchange and communication processes between cells and their environment, including interactions with other cells, tissues, ions, xenobiotics, and drugs. However, the complexity and heterogeneity of cell membranes-comprising two asymmetric layers with varying compositions across different cell types and states (e.g., healthy vs. diseased)-along with the challenges of manipulating real cell membranes represent significant obstacles for in vivo studies. To address these challenges, researchers have developed various methodologies to create model cell membranes or membrane fragments, including mono- or bilayers organized in planar systems. These models facilitate fundamental studies on membrane component interactions as well as the interactions of membrane components with external agents, such as drugs, nanoparticles (NPs), or biomarkers. The applications of model cell membranes have extended beyond basic research, encompassing areas such as biosensing and nanoparticle camouflage to evade immune detection. In this review, we highlight advancements in the engineering of planar model cell membranes, focusing on the nanoarchitectonic tools used for their fabrication. We also discuss approaches for incorporating challenging materials, such as proteins and enzymes, into these models. Finally, we present our view on future perspectives in the field of planar model cell membranes.
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Affiliation(s)
- Sara Coronado
- Departamento de Química Física, Facultad de Ciencias, Universidad de Zaragoza, Pedro Cerbuna 12, 50009 Zaragoza, Spain
- Centro de Investigaciones en Catálisis (CICAT), Escuela de Ingeniería Química, Universidad Industrial de Santander, Parque Tecnológico de Guatiguará, Km 2 vía El Refugio, Piedecuesta, Santander 681911, Colombia
| | - Johan Herrera
- Departamento de Química Física, Facultad de Ciencias, Universidad de Zaragoza, Pedro Cerbuna 12, 50009 Zaragoza, Spain
- Centro de Investigaciones en Catálisis (CICAT), Escuela de Ingeniería Química, Universidad Industrial de Santander, Parque Tecnológico de Guatiguará, Km 2 vía El Refugio, Piedecuesta, Santander 681911, Colombia
| | - María Graciela Pino
- Departamento de Química Física, Facultad de Ciencias, Universidad de Zaragoza, Pedro Cerbuna 12, 50009 Zaragoza, Spain
| | - Santiago Martín
- Departamento de Química Física, Facultad de Ciencias, Universidad de Zaragoza, Pedro Cerbuna 12, 50009 Zaragoza, Spain
| | - Luz Ballesteros-Rueda
- Departamento de Química Física, Facultad de Ciencias, Universidad de Zaragoza, Pedro Cerbuna 12, 50009 Zaragoza, Spain
- Centro de Investigaciones en Catálisis (CICAT), Escuela de Ingeniería Química, Universidad Industrial de Santander, Parque Tecnológico de Guatiguará, Km 2 vía El Refugio, Piedecuesta, Santander 681911, Colombia
| | - Pilar Cea
- Departamento de Química Física, Facultad de Ciencias, Universidad de Zaragoza, Pedro Cerbuna 12, 50009 Zaragoza, Spain
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2
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Umar AW, Ahmad N, Xu M. Reviving Natural Rubber Synthesis via Native/Large Nanodiscs. Polymers (Basel) 2024; 16:1468. [PMID: 38891415 PMCID: PMC11174458 DOI: 10.3390/polym16111468] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2024] [Revised: 04/28/2024] [Accepted: 05/17/2024] [Indexed: 06/21/2024] Open
Abstract
Natural rubber (NR) is utilized in more than 40,000 products, and the demand for NR is projected to reach $68.5 billion by 2026. The primary commercial source of NR is the latex of Hevea brasiliensis. NR is produced by the sequential cis-condensation of isopentenyl diphosphate (IPP) through a complex known as the rubber transferase (RTase) complex. This complex is associated with rubber particles, specialized organelles for NR synthesis. Despite numerous attempts to isolate, characterize, and study the RTase complex, definitive results have not yet been achieved. This review proposes an innovative approach to overcome this longstanding challenge. The suggested method involves isolating the RTase complex without using detergents, instead utilizing the native membrane lipids, referred to as "natural nanodiscs", and subsequently reconstituting the complex on liposomes. Additionally, we recommend the adaptation of large nanodiscs for the incorporation and reconstitution of the RTase complex, whether it is in vitro transcribed or present within the natural nanodiscs. These techniques show promise as a viable solution to the current obstacles. Based on our experimental experience and insights from published literature, we believe these refined methodologies can significantly enhance our understanding of the RTase complex and its role in in vitro NR synthesis.
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Affiliation(s)
- Abdul Wakeel Umar
- BNU-HKUST Laboratory of Green Innovation, Advanced Institute of Natural Sciences, Beijing Normal University at Zhuhai (BNUZ), Zhuhai 519087, China
| | - Naveed Ahmad
- Joint Center for Single Cell Biology, Shanghai Collaborative Innovation Center of Agri-Seeds, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China;
| | - Ming Xu
- BNU-HKUST Laboratory of Green Innovation, Advanced Institute of Natural Sciences, Beijing Normal University at Zhuhai (BNUZ), Zhuhai 519087, China
- Guangdong-Hong Kong Joint Laboratory for Carbon Neutrality, Jiangmen Laboratory of Carbon Science and Technology, Jiangmen 529199, China
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3
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Kuroiwa F, Suda H, Yabuki M, Atsuzawa K, Yamaguchi H, Toyota M, Kaneko Y, Yamashita S, Takahashi S, Tozawa Y. Cell-free translation system with artificial lipid-monolayer particles as a unique tool for characterizing lipid-monolayer binding proteins. Biosci Biotechnol Biochem 2024; 88:555-560. [PMID: 38444196 DOI: 10.1093/bbb/zbae026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Accepted: 02/20/2024] [Indexed: 03/07/2024]
Abstract
Methods for functional analysis of proteins specifically localizing to lipid monolayers such as rubber particles and lipid droplets are limited. We have succeeded in establishing a system in which artificially prepared lipid monolayer particles are added to a cell-free translation system to confirm the properties of proteins that specifically bind to lipid monolayers in a translation-coupled manner.
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Affiliation(s)
- Fu Kuroiwa
- Graduate School of Science and Engineering, Saitama University, Saitama, Japan
| | - Hiraku Suda
- Graduate School of Science and Engineering, Saitama University, Saitama, Japan
| | - Maho Yabuki
- Graduate School of Science and Engineering, Saitama University, Saitama, Japan
| | - Kimie Atsuzawa
- Comprehensive Analysis Center for Science, Saitama University, Saitama, Japan
| | | | - Masatsugu Toyota
- Graduate School of Science and Engineering, Saitama University, Saitama, Japan
| | - Yasuko Kaneko
- Department of Natural Science in the Faculty of Education, Saitama University, Saitama, Japan
| | - Satoshi Yamashita
- Graduate School of Natural Science and Technology, Kanazawa University, Kakuma, Kanazawa, Japan
| | - Seiji Takahashi
- Graduate School of Engineering, Tohoku University, Sendai, Miyagi, Japan
| | - Yuzuru Tozawa
- Graduate School of Science and Engineering, Saitama University, Saitama, Japan
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4
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Goh MWS, Tozawa Y, Tero R. Assembly of Cell-Free Synthesized Ion Channel Molecules in Artificial Lipid Bilayer Observed by Atomic Force Microscopy. MEMBRANES 2023; 13:854. [PMID: 37999340 PMCID: PMC10673230 DOI: 10.3390/membranes13110854] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 10/20/2023] [Accepted: 10/23/2023] [Indexed: 11/25/2023]
Abstract
Artificial lipid bilayer systems, such as vesicles, black membranes, and supported lipid bilayers (SLBs), are valuable platforms for studying ion channels at the molecular level. The reconstitution of the ion channels in an active form is a crucial process in studies using artificial lipid bilayer systems. In this study, we investigated the assembly of the human ether-a-go-go-related gene (hERG) channel prepared in a cell-free synthesis system. AFM topographies revealed the presence of protrusions with a uniform size in the entire SLB that was prepared with the proteoliposomes (PLs) incorporating the cell-free-synthesized hERG channel. We attributed the protrusions to hERG channel monomers, taking into consideration the AFM tip size, and identified assembled structures of the monomer that exhibited dimeric, trimeric, and tetrameric-like arrangements. We observed molecular images of the functional hERG channel reconstituted in a lipid bilayer membrane using AFM and quantitatively evaluated the association state of the cell-free synthesized hERG channel.
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Affiliation(s)
- Melvin Wei Shern Goh
- Department of Applied Chemistry and Life Science, Toyohashi University of Technology, Toyohashi 441-8580, Japan
| | - Yuzuru Tozawa
- Graduate School of Science and Engineering, Saitama University, Saitama 338-8570, Japan;
| | - Ryugo Tero
- Department of Applied Chemistry and Life Science, Toyohashi University of Technology, Toyohashi 441-8580, Japan
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5
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Kleinheinz D, D’Onofrio C, Carraher C, Bozdogan A, Ramach U, Schuster B, Geiß M, Valtiner M, Knoll W, Andersson J. Activity of Single Insect Olfactory Receptors Triggered by Airborne Compounds Recorded in Self-Assembled Tethered Lipid Bilayer Nanoarchitectures. ACS APPLIED MATERIALS & INTERFACES 2023; 15:46655-46667. [PMID: 37753951 PMCID: PMC10571041 DOI: 10.1021/acsami.3c09304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Accepted: 09/13/2023] [Indexed: 09/28/2023]
Abstract
Membrane proteins are among the most difficult to study as they are embedded in the cellular membrane, a complex and fragile environment with limited experimental accessibility. To study membrane proteins outside of these environments, model systems are required that replicate the fundamental properties of the cellular membrane without its complexity. We show here a self-assembled lipid bilayer nanoarchitecture on a solid support that is stable for several days at room temperature and allows the measurement of insect olfactory receptors at the single-channel level. Using an odorant binding protein, we capture airborne ligands and transfer them to an olfactory receptor from Drosophila melanogaster (OR22a) complex embedded in the lipid membrane, reproducing the complete olfaction process in which a ligand is captured from air and transported across an aqueous reservoir by an odorant binding protein and finally triggers a ligand-gated ion channel embedded in a lipid bilayer, providing direct evidence for ligand capture and olfactory receptor triggering facilitated by odorant binding proteins. This model system presents a significantly more user-friendly and robust platform to exploit the extraordinary sensitivity of insect olfaction for biosensing. At the same time, the platform offers a new opportunity for label-free studies of the olfactory signaling pathways of insects, which still have many unanswered questions.
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Affiliation(s)
- David Kleinheinz
- Austrian
Institute of Technology GmbH, Giefinggasse 4, Vienna 1210, Austria
| | - Chiara D’Onofrio
- Austrian
Institute of Technology GmbH, Giefinggasse 4, Vienna 1210, Austria
| | - Colm Carraher
- The
New Zealand Institute for Plant and Food Research, 120 Mount Albert Road, Sandringham, Auckland 1025, New Zealand
| | - Anil Bozdogan
- Austrian
Institute of Technology GmbH, Giefinggasse 4, Vienna 1210, Austria
| | - Ulrich Ramach
- Technische
Universität Wien, Wiedner Hauptstr. 8-10/134, Wien 1040, Austria
- CEST
Kompetenzzentrum für Oberflächentechnologie, Viktor Kaplan-Straße 2, Wiener Neustadt 2700, Austria
| | - Bernhard Schuster
- Department
of Bionanosciences, Institute of Synthetic Bioarchitectures, University of Natural Resources and Life Sciences
(BOKU), Muthgasse 11, Vienna 1190, Austria
| | - Manuela Geiß
- Software
Competence Center Hagenberg GmbH, Softwarepark 32a, Hagenberg 4232, Austria
| | - Markus Valtiner
- Technische
Universität Wien, Wiedner Hauptstr. 8-10/134, Wien 1040, Austria
| | - Wolfgang Knoll
- Austrian
Institute of Technology GmbH, Giefinggasse 4, Vienna 1210, Austria
- Danube
Private University, Steiner
Landstraße 124, Krems an der Donau 3500, Austria
| | - Jakob Andersson
- Austrian
Institute of Technology GmbH, Giefinggasse 4, Vienna 1210, Austria
- Technische
Universität Wien, Wiedner Hauptstr. 8-10/134, Wien 1040, Austria
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6
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Manzer ZA, Selivanovitch E, Ostwalt AR, Daniel S. Membrane protein synthesis: no cells required. Trends Biochem Sci 2023; 48:642-654. [PMID: 37087310 DOI: 10.1016/j.tibs.2023.03.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Revised: 02/20/2023] [Accepted: 03/22/2023] [Indexed: 04/24/2023]
Abstract
Despite advances in membrane protein (MP) structural biology and a growing interest in their applications, these proteins remain challenging to study. Progress has been hindered by the complex nature of MPs and innovative methods will be required to circumvent technical hurdles. Cell-free protein synthesis (CFPS) is a burgeoning technique for synthesizing MPs directly into a membrane environment using reconstituted components of the cellular transcription and translation machinery in vitro. We provide an overview of CFPS and how this technique can be applied to the synthesis and study of MPs. We highlight numerous strategies including synthesis methods and folding environments, each with advantages and limitations, to provide a survey of how CFPS techniques can advance the study of MPs.
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Affiliation(s)
- Zachary A Manzer
- R.F. School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Ekaterina Selivanovitch
- R.F. School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Alexis R Ostwalt
- R.F. School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Susan Daniel
- R.F. School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853, USA.
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7
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Kageyama H, Ma T, Sato M, Komiya M, Tadaki D, Hirano-Iwata A. New Aspects of Bilayer Lipid Membranes for the Analysis of Ion Channel Functions. MEMBRANES 2022; 12:membranes12090863. [PMID: 36135882 PMCID: PMC9501126 DOI: 10.3390/membranes12090863] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2022] [Revised: 08/26/2022] [Accepted: 08/31/2022] [Indexed: 05/30/2023]
Abstract
The bilayer lipid membrane (BLM) is the main structural component of cell membranes, in which various membrane proteins are embedded. Artificially formed BLMs have been used as a platform in studies of the functions of membrane proteins, including various ion channels. In this review, we summarize recent advances that have been made on artificial BLM systems for the analysis of ion channel functions. We focus on two BLM-based systems, cell-membrane mimicry and four-terminal BLM systems. As a cell-membrane-mimicking system, an efficient screening platform for the evaluation of drug side effects that act on a cell-free synthesized channel has been developed, and its prospects for use in personalized medicine will be discussed. In the four-terminal BLMs, we introduce "lateral voltage" to BLM systems as a novel input to regulate channel activities, in addition to the traditional transmembrane voltages. Such state-of-the-art technologies and new system setups are predicted to pave the way for a variety of applications, in both fundamental physiology and in drug discovery.
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Affiliation(s)
- Hironori Kageyama
- Graduate School of Biomedical Engineering, Tohoku University, 6-6 Aoba, Aramaki, Aoba-ku, Sendai 980-8579, Japan
- Research Institute of Electrical Communication, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
| | - Teng Ma
- Advanced Institute for Materials Research (WPI-AIMR), Tohoku University, 2-2-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
| | - Madoka Sato
- Graduate School of Biomedical Engineering, Tohoku University, 6-6 Aoba, Aramaki, Aoba-ku, Sendai 980-8579, Japan
- Research Institute of Electrical Communication, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
| | - Maki Komiya
- Research Institute of Electrical Communication, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
| | - Daisuke Tadaki
- Research Institute of Electrical Communication, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
| | - Ayumi Hirano-Iwata
- Graduate School of Biomedical Engineering, Tohoku University, 6-6 Aoba, Aramaki, Aoba-ku, Sendai 980-8579, Japan
- Research Institute of Electrical Communication, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
- Advanced Institute for Materials Research (WPI-AIMR), Tohoku University, 2-2-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
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8
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Tong X, Kim EJ, Lee JK. Sustainability of in vitro light-dependent NADPH generation by the thylakoid membrane of Synechocystis sp. PCC6803. Microb Cell Fact 2022; 21:94. [PMID: 35643504 PMCID: PMC9148488 DOI: 10.1186/s12934-022-01825-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2022] [Accepted: 05/15/2022] [Indexed: 11/30/2022] Open
Abstract
BACKGROUND NADPH is used as a reductant in various biosynthetic reactions. Cell-free bio-systems have gained considerable attention owing to their high energy utilization and time efficiency. Efforts have been made to continuously supply reducing power to the reaction mixture in a cyclical manner. The thylakoid membrane (TM) is a promising molecular energy generator, producing NADPH under light. Thus, TM sustainability is of major relevance for its in vitro utilization. RESULTS Over 70% of TMs prepared from Synechocystis sp. PCC6803 existed in a sealed vesicular structure, with the F1 complex of ATP synthase facing outward (right-side-out), producing NADPH and ATP under light. The NADPH generation activity of TM increased approximately two-fold with the addition of carbonyl cyanide-p-(trifluoromethoxy) phenylhydrazone (FCCP) or removal of the F1 complex using EDTA. Thus, the uncoupling of proton translocation from the electron transport chain or proton leakage through the Fo complex resulted in greater NADPH generation. Biosilicified TM retained more than 80% of its NADPH generation activity after a week at 30°C in the dark. However, activity declined sharply to below 30% after two days in light. The introduction of engineered water-forming NADPH oxidase (Noxm) to keep the electron transport chain of TM working resulted in the improved sustainability of NADPH generation activity in a ratio (Noxm to TM)-dependent manner, which correlated with the decrease of singlet oxygen generation. Removal of reactive oxygen species (ROS) by catalase further highlighted the sustainable NADPH generation activity of up to 80% in two days under light. CONCLUSION Reducing power generated by light energy has to be consumed for TM sustainability. Otherwise, TM can generate singlet oxygen, causing oxidative damage. Thus, TMs should be kept in the dark when not in use. Although NADPH generation activity by TM can be extended via silica encapsulation, further removal of hydrogen peroxide results in an improvement of TM sustainability. Therefore, as long as ROS formation by TM in light is properly handled, it can be used as a promising source of reducing power for in vitro biochemical reactions.
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Affiliation(s)
- Xiaomeng Tong
- Department of Life Science, Sogang University, Mapo, Shinsu 1, Seoul, 121-742, Korea
| | - Eui-Jin Kim
- Microbial Research Department, Nakdonggang National Institute of Biological Resources, Gyeongsangbuk-do, Sangju-si, 37242, Korea.
| | - Jeong K Lee
- Department of Life Science, Sogang University, Mapo, Shinsu 1, Seoul, 121-742, Korea.
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9
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Capability of Polyunsaturated Phosphatidylcholine for Non-raft Domain Formation in Cholesterol-containing Lipid Bilayers. E-JOURNAL OF SURFACE SCIENCE AND NANOTECHNOLOGY 2022. [DOI: 10.1380/ejssnt.2022-015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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10
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Silicon Nitride-Based Micro-Apertures Coated with Parylene for the Investigation of Pore Proteins Fused in Free-Standing Lipid Bilayers. MEMBRANES 2022; 12:membranes12030309. [PMID: 35323784 PMCID: PMC8954132 DOI: 10.3390/membranes12030309] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/14/2022] [Revised: 02/25/2022] [Accepted: 03/07/2022] [Indexed: 12/21/2022]
Abstract
In this work, we present a microsystem setup for performing sensitive biological membrane translocation measurements. Thin free-standing synthetic bilayer lipid membranes (BLM) were constructed in microfabricated silicon nitride apertures (<100 µm in diameter), conformal coated with Parylene (Parylene-C or Parylene-AF4). Within these BLMs, electrophysiological measurements were conducted to monitor the behavior of different pore proteins. Two approaches to integrate pore-forming proteins into the membrane were applied: direct reconstitution and reconstitution via outer membrane vesicles (OMVs) released from Gram-negative bacteria. The advantage of utilizing OMVs is that the pore proteins remain in their native lipid and lipopolysaccharide (LPS) environment, representing a more natural state compared to the usage of fused purified pore proteins. Multiple aperture chips can be easily assembled in the 3d-printed holder to conduct parallel membrane transport investigations. Moreover, well defined microfabricated apertures are achievable with very high reproducibility. The presented microsystem allows the investigation of fast gating events (down to 1 ms), pore blocking by an antibiotic, and gating events of small pores (amplitude of approx. 3 pA).
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11
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Tae H, Park S, Ma GJ, Cho NJ. Nanoarchitectured air-stable supported lipid bilayer incorporating sucrose-bicelle complex system. NANO CONVERGENCE 2022; 9:3. [PMID: 35015161 PMCID: PMC8752642 DOI: 10.1186/s40580-021-00292-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Accepted: 11/27/2021] [Indexed: 06/14/2023]
Abstract
Cell-membrane-mimicking supported lipid bilayers (SLBs) provide an ultrathin, self-assembled layer that forms on solid supports and can exhibit antifouling, signaling, and transport properties among various possible functions. While recent material innovations have increased the number of practically useful SLB fabrication methods, typical SLB platforms only work in aqueous environments and are prone to fluidity loss and lipid-bilayer collapse upon air exposure, which limits industrial applicability. To address this issue, herein, we developed sucrose-bicelle complex system to fabricate air-stable SLBs that were laterally mobile upon rehydration. SLBs were fabricated from bicelles in the presence of up to 40 wt% sucrose, which was verified by quartz crystal microbalance-dissipation (QCM-D) and fluorescence recovery after photobleaching (FRAP) experiments. The sucrose fraction in the system was an important factor; while 40 wt% sucrose induced lipid aggregation and defects on SLBs after the dehydration-rehydration process, 20 wt% sucrose yielded SLBs that exhibited fully recovered lateral mobility after these processes. Taken together, these findings demonstrate that sucrose-bicelle complex system can facilitate one-step fabrication of air-stable SLBs that can be useful for a wide range of biointerfacial science applications.
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Affiliation(s)
- Hyunhyuk Tae
- School of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue 639798, Singapore, Singapore
| | - Soohyun Park
- School of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue 639798, Singapore, Singapore
| | - Gamaliel Junren Ma
- School of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue 639798, Singapore, Singapore
| | - Nam-Joon Cho
- School of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue 639798, Singapore, Singapore.
- China-Singapore International Joint Research Institute (CSIJRI), Guangzhou, 510000, China.
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12
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Ma T, Sato M, Komiya M, Kanomata K, Watanabe T, Feng X, Miyata R, Tadaki D, Hirose F, Tozawa Y, Hirano-Iwata A. Lateral voltage as a new input for artificial lipid bilayer systems. Faraday Discuss 2021; 233:244-256. [PMID: 34874047 DOI: 10.1039/d1fd00045d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this work, we propose lateral voltage as a new input for use in artificial lipid bilayer systems in addition to the commonly used transmembrane voltage. To apply a lateral voltage to bilayer lipid membranes, we fabricated electrode-equipped silicon and Teflon chips. The Si chips could be used for photodetector devices based on fullerene-doped lipid bilayers, and the Teflon chips were used in a study of the ion channel functions in the lipid bilayer. The findings indicate that the lateral voltage effectively regulates the transmembrane current, in both ion-channel-incorporated and fullerene-incorporated lipid bilayer systems, suggesting that the lateral voltage is a practicable and useful additional input for use in lipid bilayer systems.
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Affiliation(s)
- Teng Ma
- Advanced Institute for Materials Research (WPI-AIMR), Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan. .,Core Research Cluster, Tohoku University, 2-1-1 Katahirano, Aoba-ku, Sendai 980-8577, Japan
| | - Madoka Sato
- Research Institute of Electrical Communication, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan.,Graduate School of Biomedical Engineering, Tohoku University, 6-6 Aoba, Aramaki, Aoba-ku, Sendai 980-8579, Japan
| | - Maki Komiya
- Research Institute of Electrical Communication, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
| | - Kensaku Kanomata
- Graduate School of Science and Engineering, Yamagata University, 4-3-16 Jonan, Yonezawa 992-8510, Japan
| | - Takaya Watanabe
- Research Institute of Electrical Communication, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan.,Graduate School of Biomedical Engineering, Tohoku University, 6-6 Aoba, Aramaki, Aoba-ku, Sendai 980-8579, Japan
| | - Xingyao Feng
- Research Institute of Electrical Communication, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
| | - Ryusuke Miyata
- Research Institute of Electrical Communication, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan.,Graduate School of Biomedical Engineering, Tohoku University, 6-6 Aoba, Aramaki, Aoba-ku, Sendai 980-8579, Japan
| | - Daisuke Tadaki
- Research Institute of Electrical Communication, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
| | - Fumihiko Hirose
- Graduate School of Science and Engineering, Yamagata University, 4-3-16 Jonan, Yonezawa 992-8510, Japan
| | - Yuzuru Tozawa
- Graduate School of Science and Engineering, Saitama University, 255 Shimo-Okubo, Sakura-ku, Saitama-shi, Saitama 338-8570, Japan
| | - Ayumi Hirano-Iwata
- Advanced Institute for Materials Research (WPI-AIMR), Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan. .,Core Research Cluster, Tohoku University, 2-1-1 Katahirano, Aoba-ku, Sendai 980-8577, Japan.,Research Institute of Electrical Communication, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
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13
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Non-raft submicron domain formation in cholesterol-containing lipid bilayers induced by polyunsaturated phosphatidylethanolamine. Colloids Surf B Biointerfaces 2021; 210:112235. [PMID: 34891064 DOI: 10.1016/j.colsurfb.2021.112235] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Revised: 11/08/2021] [Accepted: 11/16/2021] [Indexed: 12/13/2022]
Abstract
Domain formation in "HLC" ternary lipid bilayers, comprising a high transition temperature (High-Tm) lipid, a Low-Tm lipid, and cholesterol (Chol), has been extensively studied as raft-resembling systems. Recently, we reported the formation of submicron domains in an "LLC" lipid bilayer, encompassing Low-Tm phosphatidylethanolamine (PE), Low-Tm phosphatidylcholine (PC), and Chol. We hypothesized that the formation of this unique domain is driven by polyunsaturated PE. In this study, we explored the effects of the degree of PE unsaturation and the double bond distribution at the sn-position on the mechanism of formation and the composition of submicron domains. Supported lipid bilayers (SLBs), comprising PE with various degrees of unsaturation, monounsaturated PC (POPC), and Chol, were investigated using fluorescence microscopy, atomic force microscopy, and the force-distance curve measurement. The area fraction of submicron domains in PE+POPC+Chol-SLB increased with the PE concentration and degree of unsaturation of the PE acyl chain. The results indicated that the submicron domains were enriched with polyunsaturated PE and were in the liquid-disordered-like state, whereas their surrounding regions were in the liquid-ordered-like state. Segregation of polyunsaturated PE from the Chol-containing region generated submicron domains in the LLC lipid bilayer. We propose a mechanism for the formation of these submicron domains based on molecular interactions involving the hydrophobic and hydrophilic parts of the bilayer membrane.
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14
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Wang J, Ying YL, Zhong CB, Zhang LM, Yan F, Long YT. Instrumentational implementation for parallelized nanopore electrochemical measurements. Analyst 2021; 146:4111-4120. [PMID: 34116564 DOI: 10.1039/d1an00471a] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Nanopore electrochemistry, as one of the promising tools for single molecule sensing, has proved its capability in DNA sequencing and protein analysis. To achieve a high resolution for obtaining molecular information, the nanopore electrochemical technique not only urgently requires an appropriate nanopore sensing interface with atomic resolution but also requires advanced instrumentation and its related data processing methods. In order to reveal the fundamental biological process and process the point-of-care diagnosis, it is necessary to use a nanopore sensing instrument with a high amperometric and temporal resolution as well as high throughput. The development of the instrumentation requires multi-disciplinary collaboration involving preparing a sensitive nanopore interface, low-noise circuit design, and intelligent data analysis. In this review, we have summarized the recent improvements in the nanopore sensing interface as well as discussed the higher throughput achieved by nanopore arrays and intelligent nanopore data analysis methods. The parallelized nanopore instrumentation could be popularized to all ranges of single-molecule applications.
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Affiliation(s)
- Jiajun Wang
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, 210023, Nanjing, China.
| | - Yi-Lun Ying
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, 210023, Nanjing, China. and Chemistry and Biomedicine Innovation Center, Nanjing University, 210023, Nanjing, China
| | - Cheng-Bing Zhong
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, 210023, Nanjing, China.
| | - Li-Min Zhang
- School of Electronic Science and Engineering, Nanjing University, 210023, Nanjing, China
| | - Feng Yan
- School of Electronic Science and Engineering, Nanjing University, 210023, Nanjing, China
| | - Yi-Tao Long
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, 210023, Nanjing, China.
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15
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Sabirovas T, Valiūnienė A, Valincius G. Hybrid bilayer membranes on metallurgical polished aluminum. Sci Rep 2021; 11:9648. [PMID: 33958658 PMCID: PMC8102548 DOI: 10.1038/s41598-021-89150-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Accepted: 04/15/2021] [Indexed: 11/09/2022] Open
Abstract
In this work we describe the functionalization of metallurgically polished aluminum surfaces yielding biomimetic electrodes suitable for probing protein/phospholipid interactions. The functionalization involves two simple steps: silanization of the aluminum and subsequent fusion of multilamellar vesicles which leads to the formation of a hybrid bilayer lipid membrane (hBLM). The vesicle fusion was followed in real-time by fast Fourier transform electrochemical impedance spectroscopy (FFT EIS). The impedance-derived complex capacitance of the hBLMs was approximately 0.61 µF cm−2, a value typical for intact phospholipid bilayers. We found that the hBLMs can be readily disrupted if exposed to > 400 nM solutions of the pore-forming peptide melittin. However, the presence of cholesterol at 40% (mol) in hBLMs exhibited an inhibitory effect on the membrane-damaging capacity of the peptide. The melittin-membrane interaction was concentration dependent decreasing with concentration. The hBLMs on Al surface can be regenerated multiple times, retaining their dielectric and functional properties essentially intact.
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Affiliation(s)
- Tomas Sabirovas
- Institute of Biochemistry, Life Sciences Center, Vilnius University, Sauletekio ave. 7, 10257, Vilnius, Lithuania
| | - Aušra Valiūnienė
- Institute of Chemistry, Faculty of Chemistry and Geosciences, Vilnius University, Naugarduko 24, 03225, Vilnius, Lithuania.
| | - Gintaras Valincius
- Institute of Biochemistry, Life Sciences Center, Vilnius University, Sauletekio ave. 7, 10257, Vilnius, Lithuania
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16
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Goh MWS, Tero R. Cholesterol-induced microdomain formation in lipid bilayer membranes consisting of completely miscible lipids. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2021; 1863:183626. [PMID: 33901442 DOI: 10.1016/j.bbamem.2021.183626] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Revised: 04/12/2021] [Accepted: 04/13/2021] [Indexed: 11/19/2022]
Abstract
Recently, we reported that a ternary lipid bilayer comprising phosphatidylethanolamine (PE), phosphatidylcholine (PC), which were both derived from chicken egg, and cholesterol (Chol) generates microdomains that function as specific fusion sites for proteoliposomes. Chol-induced microdomain formation in a completely miscible lipid bilayer is an exceptional phenomenon. Numerous studies have elucidated the formation of domains in liquid ordered (Lo) and liquid disordered (Ld) phases of ternary bilayers, which comprise two partially miscible lipids and Chol. Herein, we investigated the composition and mechanism of formation of these unique microdomains in supported lipid bilayers (SLBs) using a fluorescence microscope and an atomic force microscope (AFM). We prepared ternary SLBs using egg-derived PC (eggPC), Chol and three different types of PE: egg-derived PE, 1-palmitoyl-2-oleoyl-PE, and 1,2-didocosahexaenoyl-PE (diDHPE). Fluorescence microscopy observations revealed that fluid and continuous SLBs were formed at PE concentrations (CPE) of ≥6 mol%. Fluorescence recovery after photobleaching measurement revealed that the microdomain was more fluid than the surrounding region that showed typical diffusion coefficient of the Lo phase. The microdomains were observed as depressions in the AFM topographies. Their area fraction (θ) increased with CPE, and diDHPE produced a significantly large θ among the three PEs. The microdomains in the PE+eggPC+Chol-SLBs were rich in polyunsaturated PE and were in the Ld-like phase. Associating eggPC and Chol caused polyunsaturated PE to segregate, resulting in a microdomain formation by conferring the umbrella effect on Chol, entropic effect of disordered acyl chains, and π-π interactions in the hydrophobic core.
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Affiliation(s)
- Melvin Wei Shern Goh
- Department of Applied Chemistry and Life Science, Toyohashi University of Technology, Toyohashi, Aichi 441-8580, Japan
| | - Ryugo Tero
- Department of Applied Chemistry and Life Science, Toyohashi University of Technology, Toyohashi, Aichi 441-8580, Japan.
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17
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Ma T, Sato M, Komiya M, Feng X, Tadaki D, Hirano-Iwata A. Advances in Artificial Bilayer Lipid Membranes as a Novel Biosensing Platform: From Drug-screening to Self-assembled Devices. CHEM LETT 2021. [DOI: 10.1246/cl.200764] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Teng Ma
- Advanced Institute for Materials Research (WPI-AIMR), 2-1-1 Katahira, Aoba-ku, Sendai, Miyagi 980-8577, Japan
| | - Madoka Sato
- Research Institute of Electrical Communication (RIEC), 2-1-1 Katahira, Aoba-ku, Sendai, Miyagi 980-8577, Japan
| | - Maki Komiya
- Research Institute of Electrical Communication (RIEC), 2-1-1 Katahira, Aoba-ku, Sendai, Miyagi 980-8577, Japan
| | - Xingyao Feng
- Research Institute of Electrical Communication (RIEC), 2-1-1 Katahira, Aoba-ku, Sendai, Miyagi 980-8577, Japan
| | - Daisuke Tadaki
- Research Institute of Electrical Communication (RIEC), 2-1-1 Katahira, Aoba-ku, Sendai, Miyagi 980-8577, Japan
| | - Ayumi Hirano-Iwata
- Advanced Institute for Materials Research (WPI-AIMR), 2-1-1 Katahira, Aoba-ku, Sendai, Miyagi 980-8577, Japan
- Research Institute of Electrical Communication (RIEC), 2-1-1 Katahira, Aoba-ku, Sendai, Miyagi 980-8577, Japan
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18
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Parallel Recordings of Transmembrane hERG Channel Currents Based on Solvent-Free Lipid Bilayer Microarray. MICROMACHINES 2021; 12:mi12010098. [PMID: 33478052 PMCID: PMC7835820 DOI: 10.3390/mi12010098] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/13/2020] [Revised: 01/15/2021] [Accepted: 01/18/2021] [Indexed: 12/23/2022]
Abstract
The reconstitution of ion-channel proteins in artificially formed bilayer lipid membranes (BLMs) forms a well-defined system for the functional analysis of ion channels and screening of the effects of drugs that act on these proteins. To improve the efficiency of the BLM reconstitution system, we report on a microarray of stable solvent-free BLMs formed in microfabricated silicon (Si) chips, where micro-apertures with well-defined nano- and micro-tapered edges were fabricated. Sixteen micro-wells were manufactured in a chamber made of Teflon®, and the Si chips were individually embedded in the respective wells as a recording site. Typically, 11 to 16 BLMs were simultaneously formed with an average BLM number of 13.1, which corresponded to a formation probability of 82%. Parallel recordings of ion-channel activities from multiple BLMs were successfully demonstrated using the human ether-a-go-go-related gene (hERG) potassium channel, of which the relation to arrhythmic side effects following drug treatment is well recognized.
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19
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Suzuki K, Inoue H, Matsuoka S, Tero R, Hirano-Iwata A, Tozawa Y. Establishment of a cell-free translation system from rice callus extracts. Biosci Biotechnol Biochem 2020; 84:2028-2036. [PMID: 32543982 DOI: 10.1080/09168451.2020.1779024] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Eukaryotic in vitro translation systems require large numbers of protein and RNA components and thereby rely on the use of cell extracts. Here we established a new in vitro translation system based on rice callus extract (RCE). We confirmed that RCE maintains its initial activity even after five freeze-thaw cycles and that the optimum temperature for translation is around 20°C. We demonstrated that the RCE system allows the synthesis of hERG, a large membrane protein, in the presence of liposomes. We also showed that the introduction of a bicistronic mRNA based on 2A peptide to RCE allowed the production of two distinct proteins from a single mRNA. Our new method thus facilitates laboratory-scale production of cell extracts, making it a useful tool for the in vitro synthesis of proteins for biochemical studies.
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Affiliation(s)
- Kakeru Suzuki
- Graduate School of Science and Engineering, Saitama University , Saitama, Japan
| | - Haruka Inoue
- Graduate School of Science and Engineering, Saitama University , Saitama, Japan
| | - Satoshi Matsuoka
- Graduate School of Science and Engineering, Saitama University , Saitama, Japan
| | - Ryugo Tero
- Department of Applied Chemistry and Life Science, Toyohashi University of Technology , Toyohashi, Japan
| | - Ayumi Hirano-Iwata
- Advanced Institute for Materials Research, Tohoku University , Sendai, Japan
| | - Yuzuru Tozawa
- Graduate School of Science and Engineering, Saitama University , Saitama, Japan
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20
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Ahmed T, van den Driesche S, Bafna JA, Oellers M, Hemmler R, Gall K, Wagner R, Winterhalter M, Vellekoop MJ. Rapid lipid bilayer membrane formation on Parylene coated apertures to perform ion channel analyses. Biomed Microdevices 2020; 22:32. [PMID: 32355998 PMCID: PMC7192868 DOI: 10.1007/s10544-020-0473-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
We present a chip design allowing rapid and robust lipid bilayer (LBL) membrane formation using a Parylene coated thin silicon nitride aperture. After bilayer formation, single membrane channels can be reconstituted and characterized by electrophysiology. The ability for robust reconstitution will allow parallelization and enhanced screening of small molecule drugs acting on or permeating across the membrane channel. The aperture was realized on a microfabricated silicon nitride membrane by using standard clean-room fabrication processes. To ensure the lipid bilayer formation, the nitride membrane was coated with a hydrophobic and biocompatible Parylene layer. We tested both Parylene-C and Parylene-AF4. The contact angle measurements on both Parylene types showed very good hydrophobic properties and affinity to lipids. No precoating of the Parylene with an organic solvent is needed to make the aperture lipophilic, in contradiction to Teflon membranes. The chips can be easily placed in an array utilizing a 3D printed platform. Experiments show repetitive LBL formation and destruction (more than 6 times) within a very short time (few seconds). Through measurements we have established that the LBL layers are very thin. This allows the investigation of the fusion process of membrane proteins i.e. outer membrane protein (OmpF) in the LBL within a few minutes.
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Affiliation(s)
- Tanzir Ahmed
- Institute for Microsensors, -actuators and -systems (IMSAS), University of Bremen, Microsystems Center Bremen (MCB), Bremen, Germany
| | - Sander van den Driesche
- Institute for Microsensors, -actuators and -systems (IMSAS), University of Bremen, Microsystems Center Bremen (MCB), Bremen, Germany
| | - Jayesh Arun Bafna
- Department of Life Sciences and Chemistry, Jacobs University Bremen, Bremen, Germany
| | - Martin Oellers
- Institute for Microsensors, -actuators and -systems (IMSAS), University of Bremen, Microsystems Center Bremen (MCB), Bremen, Germany
| | | | | | - Richard Wagner
- Department of Life Sciences and Chemistry, Jacobs University Bremen, Bremen, Germany
| | - Mathias Winterhalter
- Department of Life Sciences and Chemistry, Jacobs University Bremen, Bremen, Germany
| | - Michael J. Vellekoop
- Institute for Microsensors, -actuators and -systems (IMSAS), University of Bremen, Microsystems Center Bremen (MCB), Bremen, Germany
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21
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Komiya M, Kato M, Tadaki D, Ma T, Yamamoto H, Tero R, Tozawa Y, Niwano M, Hirano‐Iwata A. Advances in Artificial Cell Membrane Systems as a Platform for Reconstituting Ion Channels. CHEM REC 2020; 20:730-742. [DOI: 10.1002/tcr.201900094] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2019] [Revised: 12/24/2019] [Accepted: 12/27/2019] [Indexed: 01/08/2023]
Affiliation(s)
- Maki Komiya
- Laboratory for Nanoelectronics and Spintronics, Research Institute of Electrical CommunicationTohoku University 2-1-1 Katahira, Aoba-ku, Sendai-shi Miyagi 980-8577 Japan
| | - Miki Kato
- Laboratory for Nanoelectronics and Spintronics, Research Institute of Electrical CommunicationTohoku University 2-1-1 Katahira, Aoba-ku, Sendai-shi Miyagi 980-8577 Japan
| | - Daisuke Tadaki
- Laboratory for Nanoelectronics and Spintronics, Research Institute of Electrical CommunicationTohoku University 2-1-1 Katahira, Aoba-ku, Sendai-shi Miyagi 980-8577 Japan
| | - Teng Ma
- Advanced Institute for Materials ResearchTohoku University 2-1-1 Katahira, Aoba-ku, Sendai-shi Miyagi 980-8577 Japan
| | - Hideaki Yamamoto
- Laboratory for Nanoelectronics and Spintronics, Research Institute of Electrical CommunicationTohoku University 2-1-1 Katahira, Aoba-ku, Sendai-shi Miyagi 980-8577 Japan
| | - Ryugo Tero
- Department of Applied Chemistry and Life ScienceToyohashi University of Technology 1-1 Hibarigaoka, Tempaku-cho, Toyohashi Aichi 441-8580 Japan
| | - Yuzuru Tozawa
- Graduate School of Science and EngineeringSaitama University 255 Shimo-Okubo, Sakura-ku, Saitama-shi Saitama 338-8570 Japan
| | - Michio Niwano
- Kansei Fukushi Research InstituteTohoku Fukushi University 6-149-1 Kunimi-ga-oka, Aoba-ku, Sendai-shi Miyagi 989-3201 Japan
| | - Ayumi Hirano‐Iwata
- Laboratory for Nanoelectronics and Spintronics, Research Institute of Electrical CommunicationTohoku University 2-1-1 Katahira, Aoba-ku, Sendai-shi Miyagi 980-8577 Japan
- Advanced Institute for Materials ResearchTohoku University 2-1-1 Katahira, Aoba-ku, Sendai-shi Miyagi 980-8577 Japan
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22
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Kang X, Alibakhshi MA, Wanunu M. One-Pot Species Release and Nanopore Detection in a Voltage-Stable Lipid Bilayer Platform. NANO LETTERS 2019; 19:9145-9153. [PMID: 31724865 DOI: 10.1021/acs.nanolett.9b04446] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Biological nanopores have been used as powerful platforms for label-free detection and identification of a range of biomolecules for biosensing applications and single molecule biophysics studies. Nonetheless, high limit of detection (LOD) of analytes due to inefficient biomolecular capture into biological nanopores at low voltage poses practical limits on their biosensing efficacy. Several approaches have been proposed to improve the voltage stability of the membrane, including polymerization and hydrogel coating, however, these compromise the lipid fluidity. Here, we developed a chip-based platform that can be massively produced on a wafer scale that is capable of sustaining high voltages of 350 mV with comparable membrane areas to traditional systems. Using this platform, we demonstrate sensing of DNA hairpins in α-hemolysin nanopores at the nanomolar regime under high voltage. Further, we have developed a workflow for one-pot enzymatic release of DNA hairpins with different stem lengths from magnetic microbeads, followed by multiplexed nanopore-based quantification of the hairpins within minutes, paving the way for novel nanopore-based multiplexed biosensing applications.
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23
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Ma T, Feng X, Ohori T, Miyata R, Tadaki D, Yamaura D, Deguchi T, Komiya M, Kanomata K, Hirose F, Niwano M, Hirano-Iwata A. Modulation of Photoinduced Transmembrane Currents in a Fullerene-Doped Freestanding Lipid Bilayer by a Lateral Bias. ACS OMEGA 2019; 4:18299-18303. [PMID: 31720530 PMCID: PMC6844088 DOI: 10.1021/acsomega.9b02336] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2019] [Accepted: 10/10/2019] [Indexed: 06/01/2023]
Abstract
We report on a novel lipid bilayer system, in which a lateral bias can be applied in addition to a conventional transmembrane voltage. Freestanding bilayer lipid membranes (BLMs) doped with [6,6]-phenyl-C61-butyric acid methyl ester (PCBM) were formed in a microaperture, around which metal electrodes were deposited. Using this system, it was possible to modulate and amplify photoinduced transmembrane currents by applying a lateral bias along the BLM. The results indicate that the microfabricated Si chip with embedded electrodes is a promising platform for the formation of transistor-like devices based on PCBM-doped BLMs and have potential for use in a wide variety of nanohybrid devices.
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Affiliation(s)
- Teng Ma
- Advanced
Institute for Materials Research (WPI-AIMR) and Research Institute
of Electrical Communication, Tohoku University, 2-1-1 Katahira,
Aoba-ku, Sendai 980-8577, Japan
| | - Xingyao Feng
- Advanced
Institute for Materials Research (WPI-AIMR) and Research Institute
of Electrical Communication, Tohoku University, 2-1-1 Katahira,
Aoba-ku, Sendai 980-8577, Japan
| | - Takeshi Ohori
- Advanced
Institute for Materials Research (WPI-AIMR) and Research Institute
of Electrical Communication, Tohoku University, 2-1-1 Katahira,
Aoba-ku, Sendai 980-8577, Japan
| | - Ryusuke Miyata
- Advanced
Institute for Materials Research (WPI-AIMR) and Research Institute
of Electrical Communication, Tohoku University, 2-1-1 Katahira,
Aoba-ku, Sendai 980-8577, Japan
| | - Daisuke Tadaki
- Advanced
Institute for Materials Research (WPI-AIMR) and Research Institute
of Electrical Communication, Tohoku University, 2-1-1 Katahira,
Aoba-ku, Sendai 980-8577, Japan
| | - Daichi Yamaura
- Advanced
Institute for Materials Research (WPI-AIMR) and Research Institute
of Electrical Communication, Tohoku University, 2-1-1 Katahira,
Aoba-ku, Sendai 980-8577, Japan
| | - Takafumi Deguchi
- Advanced
Institute for Materials Research (WPI-AIMR) and Research Institute
of Electrical Communication, Tohoku University, 2-1-1 Katahira,
Aoba-ku, Sendai 980-8577, Japan
| | - Maki Komiya
- Advanced
Institute for Materials Research (WPI-AIMR) and Research Institute
of Electrical Communication, Tohoku University, 2-1-1 Katahira,
Aoba-ku, Sendai 980-8577, Japan
| | - Kensaku Kanomata
- Graduate
School of Science and Engineering, Yamagata
University, 4-3-16 Jonan, Yonezawa 992-8510, Japan
| | - Fumihiko Hirose
- Graduate
School of Science and Engineering, Yamagata
University, 4-3-16 Jonan, Yonezawa 992-8510, Japan
| | - Michio Niwano
- Kansei
Fukushi Research Institute, Tohoku Fukushi
University, 6-149-1 Kunimi-ga-oka, Aoba-ku, Sendai, Miyagi 989-3201, Japan
| | - Ayumi Hirano-Iwata
- Advanced
Institute for Materials Research (WPI-AIMR) and Research Institute
of Electrical Communication, Tohoku University, 2-1-1 Katahira,
Aoba-ku, Sendai 980-8577, Japan
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24
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Feng X, Ma T, Yamaura D, Tadaki D, Hirano-Iwata A. Formation and Characterization of Air-Stable Lipid Bilayer Membranes Incorporated with Phthalocyanine Molecules. J Phys Chem B 2019; 123:6515-6520. [PMID: 31280566 DOI: 10.1021/acs.jpcb.9b05135] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Bilayer lipid membranes (BLMs) are used as basic frameworks for biosensors and biohybrid devices due to their unique properties, which include ultrathin thickness, ultrahigh resistivity, and self-assembling ability. However, BLMs can only form and maintain their structure in aqueous environments, which pose significant limitations to their use. In this work, we report on the formation of highly uniform hybrid BLMs at a water/air interface through self-assembly by simply doping the BLMs with a functional organic molecule, copper(II) 2,9,16,23-tetra-tert-butyl-29H,31H-phthalocyanine (CuPc). By transferring the membrane onto substrates, we were able to produce stable hybrid BLMs under anhydrous conditions. Atomic force microscopy and X-ray diffraction measurements confirmed that the hybrid membranes were composed of single, highly uniform BLMs or stacks of BLMs. Fluorescence resonance energy transfer measurements indicated that the CuPc molecules were located between the hydrophobic tails of lipid molecules, forming a sandwich structure in the hybrid membranes. The hybrid BLMs fabricated by this method substantially expand the range of applications of BLMs to solid-state devices.
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25
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Hartel AJW, Shekar S, Ong P, Schroeder I, Thiel G, Shepard KL. High bandwidth approaches in nanopore and ion channel recordings - A tutorial review. Anal Chim Acta 2019; 1061:13-27. [PMID: 30926031 PMCID: PMC6860018 DOI: 10.1016/j.aca.2019.01.034] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2018] [Accepted: 01/05/2019] [Indexed: 01/01/2023]
Abstract
Transport processes through ion-channel proteins, protein pores, or solid-state nanopores are traditionally recorded with commercial patch-clamp amplifiers. The bandwidth of these systems is typically limited to 10 kHz by signal-to-noise-ratio (SNR) considerations associated with these measurement platforms. At high bandwidth, the input-referred current noise in these systems dominates, determined by the input-referred voltage noise of the transimpedance amplifier applied across the capacitance at the input of the amplifier. This capacitance arises from several sources: the parasitic capacitance of the amplifier itself; the capacitance of the lipid bilayer harboring the ion channel protein (or the membrane used to form the solid-state nanopore); and the capacitance from the interconnections between the electronics and the membrane. Here, we review state-of-the-art applications of high-bandwidth conductance recordings of both ion channels and solid-state nanopores. These approaches involve tightly integrating measurement electronics fabricated in complementary metal-oxide semiconductors (CMOS) technology with lipid bilayer or solid-state membranes. SNR improvements associated with this tight integration push the limits of measurement bandwidths, in some cases in excess of 10 MHz. Recent case studies demonstrate the utility of these approaches for DNA sequencing and ion-channel recordings. In the latter case, studies with extended bandwidth have shown the potential for providing new insights into structure-function relations of these ion-channel proteins as the temporal resolutions of functional recordings matches time scales achievable with state-of-the-art molecular dynamics simulations.
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Affiliation(s)
- Andreas J W Hartel
- Bioelectronic Systems Laboratory, Department of Electrical Engineering, Columbia University, New York City, 10027, NY, USA.
| | - Siddharth Shekar
- Bioelectronic Systems Laboratory, Department of Electrical Engineering, Columbia University, New York City, 10027, NY, USA
| | - Peijie Ong
- Bioelectronic Systems Laboratory, Department of Electrical Engineering, Columbia University, New York City, 10027, NY, USA
| | - Indra Schroeder
- Plant Membrane Biophysics, Technische Universität Darmstadt, Darmstadt, Germany
| | - Gerhard Thiel
- Plant Membrane Biophysics, Technische Universität Darmstadt, Darmstadt, Germany
| | - Kenneth L Shepard
- Bioelectronic Systems Laboratory, Department of Electrical Engineering, Columbia University, New York City, 10027, NY, USA.
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KOMIYA M, MA T, TADAKI D, HIRANO-IWATA A. Development of an Analytical System for Ion Channel Proteins Based on Artificial Bilayer Lipid Membranes —Screening of Drug Components that Haveing Side Effects on hERG Channels for Personalized Medicine—. BUNSEKI KAGAKU 2018. [DOI: 10.2116/bunsekikagaku.67.749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Affiliation(s)
- Maki KOMIYA
- Laboratory for Nanoelectronics and Spintronics, Research Institute of Electrical Communication, Tohoku University
| | - Teng MA
- Advanced Institute for Materials Research, Tohoku University
| | - Daisuke TADAKI
- Laboratory for Nanoelectronics and Spintronics, Research Institute of Electrical Communication, Tohoku University
| | - Ayumi HIRANO-IWATA
- Laboratory for Nanoelectronics and Spintronics, Research Institute of Electrical Communication, Tohoku University
- Advanced Institute for Materials Research, Tohoku University
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Yamaura D, Tadaki D, Araki S, Yoshida M, Arata K, Ohori T, Ishibashi KI, Kato M, Ma T, Miyata R, Yamamoto H, Tero R, Sakuraba M, Ogino T, Niwano M, Hirano-Iwata A. Amphiphobic Septa Enhance the Mechanical Stability of Free-Standing Bilayer Lipid Membranes. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2018; 34:5615-5622. [PMID: 29664647 DOI: 10.1021/acs.langmuir.8b00747] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Artificial bilayer lipid membranes (BLMs) provide well-defined systems for investigating the fundamental properties of membrane proteins, including ion channels, and for screening the effect of drugs that act on them. However, the application of this technique is limited due to the low stability and low reconstitution efficiency of the process. We previously reported on improving the stability of BLM based on the fabrication of microapertures having a tapered edge in SiO2/Si3N4 septa and efficient ion channel incorporation based on vesicle fusion accelerated by a centrifugal force. Although the BLM stability and incorporation probability were dramatically improved when these approaches were used, some BLMs were ruptured when subjected to a centrifugal force. To further improve the BLM stability, we investigated the effect of modifying the surface of the SiO2/Si3N4 septa on the stability of BLM suspended in the septa. The modified surfaces were characterized in terms of hydrophobicity, lipophobicity, and surface roughness. Diffusion coefficients of the lipid monolayers formed on the modified surfaces were also determined. Highly fluidic lipid monolayers were formed on the amphiphobic substrates that had been modified with long-chain perfluorocarbons. Free-standing BLMs formed in amphiphobic septa showed a much higher mechanical stability, including tolerance to water movement and applied centrifugal forces with and without proteoliposomes, than those formed in the septa that had been modified with a short alkyl chain. These results demonstrate that highly stable BLMs are formed when the surface of the septa has amphiphobic properties. Because highly fluidic lipid monolayers that are formed on the septa seamlessly connect with BLMs in a free-standing region, the high fluidity of the lipids contributes to decreasing potential damage to BLMs when mechanical stresses are applied. This approach to improve the BLM stability increases the experimental efficiency of the BLM systems and will contribute to the development of high-throughput platforms for functional assays of ion channel proteins.
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Affiliation(s)
| | | | | | | | | | | | - Ken-Ichi Ishibashi
- Hang-Ichi Corporation , 1-7-315 Honcho , Naka-ku, Yokohama , Kanagawa 231-0005 , Japan
| | | | | | | | - Hideaki Yamamoto
- Frontier Research Institute for Interdisciplinary Sciences , Tohoku University , 6-3 Aramaki-Aza-Aoba , Aoba-ku, Sendai , Miyagi 980-8578 , Japan
| | - Ryugo Tero
- Department of Environmental and Life Sciences , Toyohashi University of Technology , Toyohashi , Aichi 441-8580 , Japan
| | | | - Toshio Ogino
- The Instrumental Analysis Center , Yokohama National University , Tokiwadai 79-5 , Hodogaya-ku, Yokohama , Kanagawa 240-8501 , Japan
| | - Michio Niwano
- Kansei Fukushi Research Institute , Tohoku Fukushi University , 6-149-1 Kunimi-ga-oka , Aoba-ku, Sendai , Miyagi 989-3201 , Japan
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28
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Annecchino LA, Schultz SR. Progress in automating patch clamp cellular physiology. Brain Neurosci Adv 2018; 2:2398212818776561. [PMID: 32166142 PMCID: PMC7058203 DOI: 10.1177/2398212818776561] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2018] [Accepted: 04/19/2018] [Indexed: 12/30/2022] Open
Abstract
Patch clamp electrophysiology has transformed research in the life sciences over the last few decades. Since their inception, automatic patch clamp platforms have evolved considerably, demonstrating the capability to address both voltage- and ligand-gated channels, and showing the potential to play a pivotal role in drug discovery and biomedical research. Unfortunately, the cell suspension assays to which early systems were limited cannot recreate biologically relevant cellular environments, or capture higher order aspects of synaptic physiology and network dynamics. In vivo patch clamp electrophysiology has the potential to yield more biologically complex information and be especially useful in reverse engineering the molecular and cellular mechanisms of single-cell and network neuronal computation, while capturing important aspects of human disease mechanisms and possible therapeutic strategies. Unfortunately, it is a difficult procedure with a steep learning curve, which has restricted dissemination of the technique. Luckily, in vivo patch clamp electrophysiology seems particularly amenable to robotic automation. In this review, we document the development of automated patch clamp technology, from early systems based on multi-well plates through to automated planar-array platforms, and modern robotic platforms capable of performing two-photon targeted whole-cell electrophysiological recordings in vivo.
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Affiliation(s)
- Luca A. Annecchino
- Centre for Neurotechnology and Department of Bioengineering, Imperial College London, London, UK
| | - Simon R. Schultz
- Centre for Neurotechnology and Department of Bioengineering, Imperial College London, London, UK
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