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Gotfredsen H, Deng JR, Van Raden JM, Righetto M, Hergenhahn J, Clarke M, Bellamy-Carter A, Hart J, O'Shea J, Claridge TDW, Duarte F, Saywell A, Herz LM, Anderson HL. Bending a photonic wire into a ring. Nat Chem 2022; 14:1436-1442. [PMID: 36253501 DOI: 10.1038/s41557-022-01032-w] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Accepted: 07/27/2022] [Indexed: 01/04/2023]
Abstract
Natural light-harvesting systems absorb sunlight and transfer its energy to the reaction centre, where it is used for photosynthesis. Synthetic chromophore arrays provide useful models for understanding energy migration in these systems. Research has focused on mimicking rings of chlorophyll molecules found in purple bacteria, known as 'light-harvesting system 2'. Linear meso-meso linked porphyrin chains mediate rapid energy migration, but until now it has not been possible to bend them into rings. Here we show that oligo-pyridyl templates can be used to bend these rod-like photonic wires to create covalent nanorings that consist of 24 porphyrin units and a single butadiyne link. Their elliptical conformations have been probed by scanning tunnelling microscopy. This system exhibits two excited state energy transfer processes: one from a bound template to the peripheral porphyrins and one, in the template-free ring, from the exciton-coupled porphyrin array to the π-conjugated butadiyne-linked porphyrin dimer segment.
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Affiliation(s)
- Henrik Gotfredsen
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford, UK
| | - Jie-Ren Deng
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford, UK
| | - Jeff M Van Raden
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford, UK
| | - Marcello Righetto
- Department of Physics, University of Oxford, Clarendon Laboratory, Oxford, UK
| | - Janko Hergenhahn
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford, UK
| | - Michael Clarke
- School of Physics & Astronomy, University of Nottingham, Nottingham, UK
| | | | - Jack Hart
- School of Physics & Astronomy, University of Nottingham, Nottingham, UK
| | - James O'Shea
- School of Physics & Astronomy, University of Nottingham, Nottingham, UK
| | - Timothy D W Claridge
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford, UK
| | - Fernanda Duarte
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford, UK
| | - Alex Saywell
- School of Physics & Astronomy, University of Nottingham, Nottingham, UK.
| | - Laura M Herz
- Department of Physics, University of Oxford, Clarendon Laboratory, Oxford, UK.
| | - Harry L Anderson
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford, UK.
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2
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Edmondson M, Saywell A. Molecular Diffusion and Self-Assembly: Quantifying the Influence of Substrate hcp and fcc Atomic Stacking. NANO LETTERS 2022; 22:8210-8215. [PMID: 36198056 PMCID: PMC9614974 DOI: 10.1021/acs.nanolett.2c02895] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Revised: 10/03/2022] [Indexed: 06/16/2023]
Abstract
Molecular diffusion is a fundamental process underpinning surface-confined molecular self-assembly and synthesis. Substrate topography influences molecular assembly, alignment, and reactions with the relationship between topography and diffusion linked to the thermodynamic evolution of such processes. Here, we observe preferential adsorption sites for tetraphenylporphyrin (2H-TPP) on Au(111) and interpret nucleation and growth of molecular islands at these sites in terms of spatial variation in diffusion barrier driven by local atomic arrangements of the Au(111) surface (the 22× √3 "herringbone" reconstruction). Variable-temperature scanning tunnelling microscopy facilitates characterization of molecular diffusion, and Arrhenius analysis allows quantitative characterization of diffusion barriers within fcc and hcp regions of the surface reconstruction (where the in-plane arrangement of the surface atoms is identical but the vertical stacking differs). The higher barrier for diffusion within fcc locations underpins the ubiquitous observation of preferential island growth within fcc regions, demonstrating the relationship between substrate-structure, diffusion, and molecular self-assembly.
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3
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Li X, Ge H, Xue R, Wu M, Chi L. Anchoring and Reacting On-Surface to Achieve Programmability. JACS AU 2022; 2:58-65. [PMID: 35098221 PMCID: PMC8790738 DOI: 10.1021/jacsau.1c00397] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Indexed: 05/25/2023]
Abstract
On-surface synthesis has developed into a modern method to fabricate low-dimensional molecular nanostructures with atomic precision. It impresses the chemistry community mostly via its simplicity, selectivity, and programmability during the synthesis. However, an insufficient mechanistic understanding of on-surface reactions and the discriminations in methodologies block it out from the conventional cognition of reaction and catalysis, which inhibits the extensive implication of on-surface synthesis. In this Perspective, we summarize the empirical paradigms of conceptually appealing programmability in on-surface synthesis. We endeavor to deliver the message that the impressive programmability is related to chemical heterogeneity which can also be coded at the molecular level and deciphered by the catalytic surfaces in varying chemical environments as specific chemical selectivity. With the assistance of structure-sensitive techniques, it is possible to recognize the chemical heterogeneity on surfaces to provide insight into the programmable on-surface construction of molecular nanoarchitectures and to reshape the correlation between the mechanistic understanding in on-surface synthesis and conventional chemistry.
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Affiliation(s)
- Xuechao Li
- Institute of Functional Nano &
Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional
Materials and Devices, Joint International Research Laboratory of
Carbon-Based Functional Materials and Devices, Soochow University, Suzhou 215123, China
| | - Haitao Ge
- Institute of Functional Nano &
Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional
Materials and Devices, Joint International Research Laboratory of
Carbon-Based Functional Materials and Devices, Soochow University, Suzhou 215123, China
| | - Renjie Xue
- Institute of Functional Nano &
Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional
Materials and Devices, Joint International Research Laboratory of
Carbon-Based Functional Materials and Devices, Soochow University, Suzhou 215123, China
| | - Minghui Wu
- Institute of Functional Nano &
Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional
Materials and Devices, Joint International Research Laboratory of
Carbon-Based Functional Materials and Devices, Soochow University, Suzhou 215123, China
| | - Lifeng Chi
- Institute of Functional Nano &
Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional
Materials and Devices, Joint International Research Laboratory of
Carbon-Based Functional Materials and Devices, Soochow University, Suzhou 215123, China
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4
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Bellamy-Carter A, Roche C, Anderson HL, Saywell A. Self-assembly of a strapped linear porphyrin oligomer on HOPG. Sci Rep 2021; 11:20388. [PMID: 34650172 PMCID: PMC8516934 DOI: 10.1038/s41598-021-99881-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Accepted: 09/22/2021] [Indexed: 11/10/2022] Open
Abstract
Polymeric structures based on porphyrin units exhibit a range of complex properties, such as nanoscale charge transport and quantum interference effects, and have the potential to act as biomimetic materials for light-harvesting and catalysis. These functionalities are based upon the characteristics of the porphyrin monomers, but are also emergent properties of the extended polymer system. Incorporation of these properties within solid-state devices requires transfer of the polymers to a supporting substrate, and may require a high-degree of lateral order. Here we show that highly ordered self-assembled structures can be formed via a simple solution deposition protocol; for a strapped linear porphyrin oligomer adsorbed on a highly oriented pyrolytic graphite (HOPG) substrate. Two distinct molecule–molecule interactions are observed to drive the formation of two molecular phases (‘Interdigitated’ and ‘Bridge-stabilised’) characterised by scanning tunnelling microscopy, providing information on the unit cell dimensions and self-assembled structure. The concentration dependence of these phases is investigated, and we conclude that the bridge-stabilised phase is a thermodynamically stable structure at room temperature.
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Affiliation(s)
| | - Cécile Roche
- Department of Chemistry, University of Oxford, Oxford, OX1 3TA, UK
| | - Harry L Anderson
- Department of Chemistry, University of Oxford, Oxford, OX1 3TA, UK
| | - Alex Saywell
- School of Physics and Astronomy, University of Nottingham, Nottingham, NG7 2RD, UK.
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5
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Steiner C, Fromm L, Gebhardt J, Liu Y, Heidenreich A, Hammer N, Görling A, Kivala M, Maier S. Host guest chemistry and supramolecular doping in triphenylamine-based covalent frameworks on Au(111). NANOSCALE 2021; 13:9798-9807. [PMID: 34028477 DOI: 10.1039/d0nr09140e] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The post-synthetic modification of covalent organic frameworks (COFs) via host-guest chemistry is an important method to tailor their electronic properties for applications. Due to the limited structural control in the assembly of two-dimensional surface-supported COFs, supramolecular networks are traditionally used at present for host-guest experiments on surfaces, which lack structural and thermal stability, however. Here, we present a combined scanning tunneling microscopy and density functional theory study to understand the host-guest interaction in triphenylamine-based covalently-linked macrocycles and networks on Au(111). These triphenylamine-based structures feature carbonyl and hydrogen functionalized pores that create preferred adsorption sites for trimesic acid (TMA) and halogen atoms. The binding of the TMA through optimized hydrogen-bond interactions is corroborated by selective adsorption positions within the pores. Band structure calculations reveal that the strong intermolecular charge transfer through the TMA bonding reduces the band gap in the triphenylamine COFs, demonstrating the concept of supramolecular doping by host-guest interactions in surface-supported COFs. Halogen atoms selectively adsorb between two carbonyl groups at Au hollow sites. The mainly dispersive interaction of the halogens with the triphenylamine COF leads to a small downshift of the bands. Most of the halogens change their adsorption position selectively upon annealing near the desorption temperature. In conclusion, we demonstrate evidence for supramolecular doping via post-synthetic modification and to track chemical reactions in confined space.
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Affiliation(s)
- Christian Steiner
- Department of Physics, Friedrich-Alexander Universität Erlangen-Nürnberg, Erlangen, Germany.
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6
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Verstraete L, De Feyter S. 2D Self-assembled molecular networks and on-surface reactivity under nanoscale lateral confinement. Chem Soc Rev 2021; 50:5884-5897. [PMID: 34027935 DOI: 10.1039/d0cs01338b] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Supramolecular self-assembly at surfaces provides a pathway for building chemically customized interfaces. Over the last three decades, research on the role of key parameters such as temperature, solute concentration, and molecular design has enabled a steady increase in the complexity of self-assembled molecular networks (SAMNs) that can thus be created. However, the structure and quality of SAMNs is often determined during the early stages of nucleation and growth. To study and influence self-assembly processes at this deterministic length scale, spatial confinement of molecular adsorbates to well-defined surface patterns with nanoscale lateral dimensions offers exciting possibilities. The aim of this tutorial review is to give an overview of the various ways in which confinement impacts SAMN formation, and how we can use that knowledge to direct assemblies towards desired structures. The possibility to exploit confinement for improved control over on-surface reactions is also contemplated.
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Affiliation(s)
- Lander Verstraete
- Department of Chemistry, Division of Molecular Imaging and Photonics, KU Leuven-University of Leuven, Celestijnenlaan 200F, B-3001 Leuven, Belgium.
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7
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Heideman GH, Berrocal JA, Stöhr M, Meijer EW, Feringa BL. Stepwise Adsorption of Alkoxy-Pyrene Derivatives onto a Lamellar, Non-Porous Naphthalenediimide-Template on HOPG. Chemistry 2021; 27:207-211. [PMID: 32893412 PMCID: PMC7821129 DOI: 10.1002/chem.202004008] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2020] [Indexed: 01/07/2023]
Abstract
The development of new strategies for the preparation of multicomponent supramolecular assemblies is a major challenge on the road to complex functional molecular systems. Here we present the use of a non-porous self-assembled monolayer from uC33 -NDI-uC33 , a naphthalenediimide symmetrically functionalized with unsaturated 33 carbon-atom-chains, to prepare bicomponent supramolecular surface systems with a series of alkoxy-pyrene (PyrOR) derivatives at the liquid/HOPG interface. While previous attempts at directly depositing many of these PyrOR units at the liquid/HOPG interface failed, the multicomponent approach through the uC33 -NDI-uC33 template enabled control over molecular interactions and facilitated adsorption. The PyrOR deposition restructured the initial uC33 -NDI-uC33 monolayer, causing an expansion in two dimensions to accommodate the guests. As far as we know, this represents the first example of a non-porous or non-metal complex-bearing monolayer that allows the stepwise formation of multicomponent supramolecular architectures on surfaces.
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Affiliation(s)
- G Henrieke Heideman
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747, AG, Groningen, The Netherlands
| | - José Augusto Berrocal
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747, AG, Groningen, The Netherlands.,Institute for Complex Molecular Systems and, Laboratory of Macromolecular and Organic Chemistry, Eindhoven University of Technology, 5600 MB, Eindhoven, The Netherlands
| | - Meike Stöhr
- Zernike Institute for Advanced Materials, University of Groningen, 9747 AG Groningen, The Netherlands
| | - E W Meijer
- Institute for Complex Molecular Systems and, Laboratory of Macromolecular and Organic Chemistry, Eindhoven University of Technology, 5600 MB, Eindhoven, The Netherlands
| | - Ben L Feringa
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747, AG, Groningen, The Netherlands
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8
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Judd CJ, Nizovtsev AS, Plougmann R, Kondratuk DV, Anderson HL, Besley E, Saywell A. Molecular Quantum Rings Formed from a π-Conjugated Macrocycle. PHYSICAL REVIEW LETTERS 2020; 125:206803. [PMID: 33258651 DOI: 10.1103/physrevlett.125.206803] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Accepted: 09/22/2020] [Indexed: 06/12/2023]
Abstract
The electronic structure of a molecular quantum ring (stacks of 40-unit cyclic porphyrin polymers) is characterized via scanning tunneling microscopy and scanning tunneling spectroscopy. Our measurements access the energetic and spatial distribution of the electronic states and, utilizing a combination of density functional theory and tight-binding calculations, we interpret the experimentally obtained electronic structure in terms of coherent quantum states confined around the circumference of the π-conjugated macrocycle. These findings demonstrate that large (53 nm circumference) cyclic porphyrin polymers have the potential to act as molecular quantum rings.
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Affiliation(s)
- Chris J Judd
- School of Physics & Astronomy, The University of Nottingham, Nottingham NG7 2RD, United Kingdom
| | - Anton S Nizovtsev
- School of Chemistry, The University of Nottingham, Nottingham NG7 2RD, United Kingdom
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences, Academician Lavrentiev Avenue 3, 630090 Novosibirsk, Russian Federation
- Novosibirsk State University, Pirogova Street 2, 630090 Novosibirsk, Russian Federation
| | - Rikke Plougmann
- School of Physics & Astronomy, The University of Nottingham, Nottingham NG7 2RD, United Kingdom
| | - Dmitry V Kondratuk
- Department of Chemistry, University of Oxford, Oxford OX1 3TA, United Kingdom
| | - Harry L Anderson
- Department of Chemistry, University of Oxford, Oxford OX1 3TA, United Kingdom
| | - Elena Besley
- School of Chemistry, The University of Nottingham, Nottingham NG7 2RD, United Kingdom
| | - Alex Saywell
- School of Physics & Astronomy, The University of Nottingham, Nottingham NG7 2RD, United Kingdom
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9
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Structural characterisation of molecular conformation and the incorporation of adatoms in an on-surface Ullmann-type reaction. Commun Chem 2020; 3:166. [PMID: 36703404 PMCID: PMC9814584 DOI: 10.1038/s42004-020-00402-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Accepted: 10/08/2020] [Indexed: 01/29/2023] Open
Abstract
The on-surface synthesis of covalently bonded materials differs from solution-phase synthesis in several respects. The transition from a three-dimensional reaction volume to quasi-two-dimensional confinement, as is the case for on-surface synthesis, has the potential to facilitate alternative reaction pathways to those available in solution. Ullmann-type reactions, where the surface plays a role in the coupling of aryl-halide functionalised species, has been shown to facilitate extended one- and two-dimensional structures. Here we employ a combination of scanning tunnelling microscopy (STM), X-ray photoelectron spectroscopy (XPS) and X-ray standing wave (XSW) analysis to perform a chemical and structural characterisation of the Ullmann-type coupling of two iodine functionalised species on a Ag(111) surface held under ultra-high vacuum (UHV) conditions. Our results allow characterisation of molecular conformations and adsorption geometries within an on-surface reaction and provide insight into the incorporation of metal adatoms within the intermediate structures of the reaction.
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10
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Chowdhury S, Das M, Mukherjee P, Gupta BC. Diameter-dependent structural and electronic property of fused porphyrin nanotubes: A density functional study. J PORPHYR PHTHALOCYA 2020. [DOI: 10.1142/s1088424620500121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
We have systematically carried out a density functional theory-based investigation to understand the structural and electronic properties of various fused metalloporphyrin nanotubes (MPNT; M = Sc and Ti) by varying their diameters ranging from 7.91 Å to 18.70 Å for ScPNT and 7.90 Å to 18.59 Å for TiPNT. Binding energies and curvature energies are calculated to access the binding strength and stability of the nanotubes (NTs). From band structure and density of states, it is observed that the ScPNTs are metallic in nature and TiPNTs are semiconductors with small band gaps. The energy gap increases with increasing tube diameter. Our study also indicates that the transition metal atoms play an important role in determining the electrical nature (metallic or semiconducting) of the NTs. Furthermore, work functions for the fused NTs are found to decrease with increasing tube diameter. These results may have direct relevance to the technological applications in terms of band gap engineering or controlled thermionic emission.
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Affiliation(s)
- Somnath Chowdhury
- Department of Physics, Visva-Bharati, Santiniketan, W.B.- 731235, India
| | - Monoj Das
- Department of Physics, Gushkara Mahavidyalaya, Gushkara, W.B.- 713128, India
| | - Prajna Mukherjee
- Department of Physics, Bolpur College, Bolpur, W.B.- 731204, India
| | - Bikash C. Gupta
- Department of Physics, Visva-Bharati, Santiniketan, W.B.- 731235, India
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11
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Nieckarz D, Szabelski P. Theoretical Modeling of the Surface-Guided Self-Assembly of Functional Molecules. Chemphyschem 2020; 21:643-650. [PMID: 31894625 DOI: 10.1002/cphc.201901105] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Revised: 12/20/2019] [Indexed: 11/06/2022]
Abstract
Directing the self-assembly of organic building blocks with 2D templates has been a promising method to create molecular superstructures having unique physicochemical properties. In this work the on-surface self-assembly of simple ditopic functional molecules confined inside periodic nanotemplates was modeled by means of the lattice Monte Carlo simulation method. Two types of confinement, that is honeycomb porous networks and parallel grooves of controlled diameter and width were used in the calculations. Additionally, the effect of (pro)chirality of the adsorbing molecules on the outcome of the templated self-assembly was examined. To that end, enantiopure and racemic assemblies were studied and the resulting structures were identified and classified. The obtained findings demonstrated that suitable tuning of the structural parameters of the templates enables directing the self-assembly towards linear and cyclic aggregates with controlled size. Moreover, chiral resolution of the molecular conformers using honeycomb networks with adjusted pore size was found possible. Our theoretical predictions can be helpful in designing structured surfaces to direct self-assembly and polymerization of organic functional building blocks.
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Affiliation(s)
- Damian Nieckarz
- Department of Theoretical Chemistry, Institute of Chemical Sciences, Faculty of Chemistry, MariaCurie-Skłodowska University in Lublin, Pl. M.C. Skłodowskiej 3, 20-031, Lublin, Poland
| | - Paweł Szabelski
- Department of Theoretical Chemistry, Institute of Chemical Sciences, Faculty of Chemistry, MariaCurie-Skłodowska University in Lublin, Pl. M.C. Skłodowskiej 3, 20-031, Lublin, Poland
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