Relative roles of biological and physical processes influencing coral recruitment during the lag phase of reef community recovery

Negative parental and offspring environmental effects of macroalgae on coral recruitment are linked with alterations in the coral larval microbiome

The persistence of reef-building corals is threatened by macroalgal competitors leading to a major demographic bottleneck in coral recruitment. Whether parental effects exist under coral-algal competition and whether they influence offspring performance via microbiome alterations represent major gaps in our understanding of the mechanisms by which macroalgae may hinder coral recovery. We investigated the diversity, variability and composition of the microbiome of adults and larvae of the coral Pocillopora acuta and surrounding benthic substrate on algal-removed and algal-dominated bommies. We then assessed the relative influence of parental and offspring environmental effects on coral recruitment processes by reciprocally exposing coral larvae from two parental origins (algal-removed and algal-dominated bommies) to algal-removed and algal-dominated environmental conditions. Dense macroalgal assemblages impacted the microbiome composition of coral larvae. Larvae produced by parents from algal-dominated bommies were depleted in putative beneficial bacteria and enriched in opportunistic taxa. These larvae had a significantly lower survival compared to larvae from algal-removed bommies regardless of environmental conditions. In contrast, algal-induced parental and offspring environmental effects interacted to reduce the survival of coral recruits. Together our results demonstrate negative algal-induced parental and offspring environmental effects on coral recruitment that could be mediated by alterations in the offspring microbiome.

Coral-seeding devices with fish-exclusion features reduce mortality on the Great Barrier Reef

Restoration methods that seed juvenile corals show promise as scalable interventions to promote population persistence through anthropogenic warming. However, challenges including predation by fishes can threaten coral survival. Coral-seeding devices with refugia from fishes offer potential solutions to limit predation-driven mortality. In an 8-month field study, we assessed the efficacy of such devices for increasing the survival of captive-reared Acropora digitifera (spat and microfragments) over control devices (featureless and caged). Devices with fish-exclusion features demonstrated a twofold increase in coral survival, while most corals seeded without protection suffered mortality within 48 h. Overall, spat faced more grazing and higher mortality compared to microfragments, and upward-facing corals were more vulnerable than side-facing corals. Grazing-induced mortality varied by site, with lower activity in locations abundant in mat-forming cyanobacteria or Scleractinian corals. Many scraping parrotfish were found feeding on or near the seeded corals; however, bites by Scarus globiceps explained the most site-related variation in grazing. Cyanobacteria may be preferred over corals as a nutritional resource for scraping parrotfish-advancing our understanding of their foraging ecology. Incorporating side-facing refugia in seeding devices and deploying to sites with nutrient-rich food sources for fish are potential strategies to enhance coral survival in restoration programs.

Fine-scale geographic risk assessment of oxybenzone sunscreen pollution within Hanauma Bay using hydrodynamic characterization and modeling

Hanauma Bay's coral reef system is threatened by sunscreen pollution. Understanding the hydrodynamic nature of the bay is crucial for understanding the transport and fate of pollutants within the bay. This study conducted a comprehensive hydrodynamic analysis, revealing significant aspects of current patterns and their influence on sunscreen pollutant behavior. The analysis demonstrated the formation of flows that drive currents parallel to the shoreline, resulting in increased pollutant retention time over sensitive reef areas. Direct flushing currents were identified as playing a role in reducing pollution buildup. Particle dynamics analysis highlighted the importance of considering temporal dynamics and their implications for pollutant pathways, particularly through the swash zone during high tide phases. The study identified primary current patterns near the reef area and emphasized the circular behavior within the water body, affecting corals' susceptibility to bleaching in the southwestern part of Hanauma bay. To understand where oxybenzone concentrations were a threat to wildlife, we created a geographic model that integrated ecological risk assessment with hydrodynamic behavior in a given system, which we designate the Risk Quotient Plume - the geographic area where the concentration is above the threat level for a chemical. The study found high oxybenzone concentrations throughout the bay, threatening coral, fish, and algae populations. Oxybenzone's distribution indicated a serious threat to the entire back reef habitat and a hinderance to coral restoration efforts. The study also emphasizes the need to consider the hydrodynamic behavior of pollutants and their interaction with microplastics in the bay. Overall, the findings provide insights into hydrodynamics and pollutant dispersion in Hanauma Bay, supporting effective pollution management and conservation strategies.

Coral recruitment: patterns and processes determining the dynamics of coral populations

Coral recruitment describes the addition of new individuals to populations, and it is one of the most fundamental demographic processes contributing to population size. As many coral reefs around the world have experienced large declines in coral cover and abundance, there has been great interest in understanding the factors causing coral recruitment to vary and the conditions under which it can support community resilience. While progress in these areas is being facilitated by technological and scientific advances, one of the best tools to quantify recruitment remains the humble settlement tile, variants of which have been in use for over a century. Here I review the biology and ecology of coral recruits and the recruitment process, largely as resolved through the use of settlement tiles, by: (i) defining how the terms 'recruit' and 'recruitment' have been used, and explaining why loose terminology has impeded scientific advancement; (ii) describing how coral recruitment is measured and why settlement tiles have value for this purpose; (iii) summarizing previous efforts to review quantitative analyses of coral recruitment; (iv) describing advances from hypothesis-driven studies in determining how refuges, seawater flow, and grazers can modulate coral recruitment; (v) reviewing the biology of small corals (i.e. recruits) to understand better how they respond to environmental conditions; and (vi) updating a quantitative compilation of coral recruitment studies extending from 1974 to present, thus revealing long-term global declines in density of recruits, juxtaposed with apparent resilience to coral bleaching. Finally, I review future directions in the study of coral recruitment, and highlight the need to expand studies to deliver taxonomic resolution, and explain why time series of settlement tile deployments are likely to remain pivotal in quantifying coral recruitment.

Effects of Madagascar marine reserves on juvenile and adult coral abundance, and the implication for population regulation

Recruitment is a critical component in the dynamics of coral assemblages, and a key question is to determine the degree to which spatial heterogeneity of adults is influenced by pre-vs. post-settlement processes. We analyzed the density of juvenile and adult corals among 18 stations located at three regions around Madagascar, and examined the effects of Marine Protected Areas (MPAs). Our survey did not detect a positive effect of MPAs on juveniles, except for Porites at the study scale. The MPA effect was more pronounced for adults, notably for Acropora, Montipora, Seriatopora, and Porites at the regional scale. For most dominant genera, densities of juveniles and adults were positively correlated at the study scale, and at least at one of the three regions. These outcomes suggest recruitment-limitation relationships for several coral taxa, although differences in post-settlement events may be sufficiently strong to distort the pattern established at settlement for other populations. The modest benefits of MPAs on the density of juvenile corals demonstrated here argue in favor of strengthening conservation measures more specifically focused to protect recruitment processes.

Stories told by corals, algae, and sea-urchins in a Mesoamerican coral reef: degradation trumps succession

Understanding the mechanisms that allow the permanence of coral reefs and the constancy of their characteristics is necessary to alleviate the effects of chronic environmental changes. After a disturbance, healthy coral reefs display trajectories that allow regaining coral cover and the establishment of framework building corals. Through a comparative approach, in a patch reef partially affected by a ship grounding, we analyzed the successional trajectories in affected and unaffected sectors. Fleshy algae (which do not promote the recruitment of corals) dominated the reef surface irrespective of the impact of the ship grounding incident. Acropora species had near-zero contributions to community structure, whereas non-framework building corals like Porites sp. had a slightly higher recruitment. Cover of coral and calcareous crustose algae decreased over time, and neither the latter nor adult coral colonies had any effect on the occurrence probabilities of small corals. Sea urchin (Diadema antillarum) densities were generally low, and thus unlikely to contribute to reverting algal dominance. The successional trajectories of the community in the impacted and non-impacted sectors of the coral patch reef agree with the inhibition successional model, leading to the development of a degraded state dominated by fleshy algae. It is probable that the stability and resilience of this degraded state are high due to the ability of fleshy algae to monopolize space, along with low coral recovery potential.

Size structure of the coral Stylophora pistillata across reef flat zones in the central Red Sea

Demographic analyses offer insight into the state of a population. Here, we surveyed different reef flat zones (exposed, midreef and sheltered) of six reefs over a cross-shelf gradient to characterize the population structure of Stylophora pistillata, a coral species which dominates reef flats in the central Red Sea. Phototransects were conducted at each reef flat zone, and the density of S. pistillata, the planar area of each colony, and the occurrence of partial mortality were calculated using the program ImageJ. Each colony was also assigned a color morph (yellow, purple or mixed colors). Density and mean size were extremely variable, both among reef flat zones and reefs, but overall, both metrics were lower on the midshelf reefs. The yellow color morph accounted for nearly 90% of colonies surveyed and dominated most reef flats assessed, with the exception of one site where 81% of colonies were purple morphs. There were no spatial trends in the percentage of colonies suffering partial mortality, but overall there is a positive correlation with size class and proportion of colonies with partial mortality. Despite few trends emerging from assessing individual parameters, a PERMANOVA analysis revealed differences among reef flat zones in most of the reefs, highlighting the importance of multivariate analysis. The data presented here serve as a baseline for monitoring and may identify possible future demographic changes to this important coral species in a region increasingly affected by bleaching events.

Limitations to coral recovery along an environmental stress gradient

Positive feedbacks driving habitat-forming species recovery and population growth are often lost as ecosystems degrade. For such systems, identifying mechanisms that limit the re-establishment of critical positive feedbacks is key to facilitating recovery. Theory predicts the primary drivers limiting system recovery shift from biological to physical as abiotic stress increases, but recent work has demonstrated that this seldom happens. We combined field and laboratory experiments to identify variation in limitations to coral recovery along an environmental stress gradient at Ningaloo Reef and Exmouth Gulf in northwest Australia. Many reefs in the region are coral depauperate due to recent cyclones and thermal stress. In general, recovery trajectories are prolonged due to limited coral recruitment. Consistent with theory, clearer water reefs under low thermal stress appear limited by biological interactions: competition with turf algae caused high mortality of newly settled corals and upright macroalgal stands drove mortality in transplanted juvenile corals. Laboratory experiments showed a positive relationship between crustose coralline algae cover and coral settlement, but only in the absence of sedimentation. Contrary to expectation, coral recovery does not appear limited by the survival or growth of recruits on turbid reefs under higher thermal stress, but to exceptionally low larval supply. Laboratory experiments showed that larval survival and settlement are unaffected by seawater quality across the study region. Rather, connectivity models predicted that many of the more turbid reefs in the Gulf are predominantly self seeded, receiving limited supply under degraded reef states. Overall, we find that the influence of oceanography can overwhelm the influences of physical and biological interactions on recovery potential at locations where environmental stressors are high, whereas populations in relatively benign physical conditions are predominantly structured by local ecological drivers. Such context-dependent information can help guide expectations and assist managers in optimizing strategies for spatial conservation planning for system recovery.

First insights into coral recruit and juvenile abundances at remote Aldabra Atoll, Seychelles

Coral recruitment and successive growth are essential for post-disturbance reef recovery. As coral recruit and juvenile abundances vary across locations and under different environmental regimes, their assessment at remote, undisturbed reefs improves our understanding of early life stage dynamics of corals. Here, we first explored changes in coral juvenile abundance across three locations (lagoon, seaward west and east) at remote Aldabra Atoll (Seychelles) between 2015 and 2019, which spanned the 2015/16 global coral bleaching event. Secondly, we measured variation in coral recruit abundance on settlement tiles from two sites (lagoon, seaward reef) during August 2018-August 2019. Juvenile abundance decreased from 14.1 ± 1.2 to 7.4 ± 0.5 colonies m-2 (mean ± SE) during 2015-2016 and increased to 22.4 ± 1.2 colonies m-2 during 2016-2019. Whilst juvenile abundance increased two- to three-fold at the lagoonal and seaward western sites during 2016-2018 (from 7.7-8.3 to 17.3-24.7 colonies m-2), increases at the seaward eastern sites occurred later (2018-2019; from 5.8-6.9 to 16.6-24.1 colonies m-2). The composition of coral recruits on settlement tiles was dominated by Pocilloporidae (64-92% of all recruits), and recruit abundance was 7- to 47-fold higher inside than outside the lagoon. Recruit abundance was highest in October-December 2018 (2164 ± 453 recruits m-2) and lowest in June-August 2019 (240 ± 98 recruits m-2). As Acroporid recruit abundance corresponded to this trend, the results suggest that broadcast spawning occurred during October-December, when water temperature increased from 26 to 29°C. This study provides the first published record on coral recruit abundance in the Seychelles Outer Islands, indicates a rapid (2-3 years) increase of juvenile corals following a bleaching event, and provides crucial baseline data for future research on reef resilience and connectivity within the region.

Optimizing coral reef recovery with context-specific management actions at prioritized reefs

Assisting the natural recovery of coral reefs through local management actions is needed in response to increasing ecosystem disturbances in the Anthropocene. There is growing evidence that commonly used resilience-based passive management approaches may not be sufficient to maintain coral reef key functions. We synthesize and discuss advances in coral reef recovery research, and its application to coral reef conservation and restoration practices. We then present a framework to guide the decision-making of reef managers, scientists and other stakeholders, to best support reef recovery after a disturbance. The overall aim of this management framework is to catalyse reef recovery, to minimize recovery times, and to limit the need for ongoing management interventions into the future. Our framework includes two main stages: first, a prioritization method for assessment following a large-scale disturbance, which is based on a reef's social-ecological values, and on a classification of the likelihood of recovery or succession resulting in degraded, novel, hybrid or historical states. Second, a flow chart to assist with determining management actions for highly valued reefs. Potential actions are chosen based on the ecological attributes of the disturbed reef, defined during ecological assessments. Depending on the context, management actions may include (1) substrata rehabilitation actions to facilitate natural coral recruitment, (2) repopulating actions using active restoration techniques, (3) resilience-based management actions and (4) monitoring coral recruitment and growth to assess the effectiveness of management interventions. We illustrate the proposed decision framework with a case study of typhoon-damaged eastern outer reefs in Palau, Micronesia. The decisions made following this framework lead to the conclusion that some reefs may not return to their historical state for many decades. However, if motivation and funds are available, new management approaches can be explored to assist coral reefs at valued locations to return to a functional state providing key ecosystem services.

Enhancing coral recruitment through assisted mass settlement of cultured coral larvae

The escalating rate at which coral communities are declining globally requires urgent intervention and new approaches to reef management to reduce and halt further coral loss. For reef systems with limited natural larval supply, the introduction of large numbers of competent coral larvae directly to natural reef substrata provides a potentially useful approach to replenish adult coral populations. While few experiments have tested this approach, only one experiment has demonstrated its long-term success to date. Given the differences in life-history traits among corals, and different sensitivities of larvae to abiotic and biotic factors, coupled with the dynamic nature of post-settlement survivorship and recruitment processes, trials of the larval enhancement technique with larvae of different coral species are needed to test the broader applicability and viability of this approach. Accordingly, in this paper we examine the applicability of the larval enhancement technique to restore a population of Acropora loripes in the Bolinao-Anda Reef Complex, Pangasinan, northwestern Philippines. Larvae were cultured ex situ following spawning of collected A. loripes colonies in June 2014. Competent larvae were transported to degraded reef areas and approximately 300,000 larvae were introduced in each of three 6 × 4 m plots directly on the reef. Fine mesh enclosures retained the larvae inside each treatment plot for five days. Three adjacent 6 × 4 m plots that served as controls were also covered with mesh enclosures, but no larvae were introduced. Each plot contained ten 10 × 10 cm conditioned settlement tiles cut from dead tabulate Acropora that were used to quantify initial larval settlement. After allowing larval settlement for five days, mean settlement on tiles from the larval enhancement plots that were monitored under stereomicroscopes was significantly higher (27.8 ± 6.7 spat per tile) than in control plots, in which not a single recruit was recorded. Post-settlement survivorship and growth of spat and coral recruits on tiles and reef substrata inside the experimental plots were monitored periodically for 35 months. After 35 months, the mean size of each of the remaining 47 A. loripes coral colonies surviving on the reef substrata was 438.1 ± 5.4 cm³, with a mean diameter of 7.9 ± 0.6 cm. The average production cost for each of the surviving A. loripes colonies at 35 months was USD 35.20. These colonies are expected to spawn and contribute to the natural larval pool when they become reproductively mature, thereby enhancing natural coral recovery in the area. This study demonstrates that mass coral larval enhancement can be successfully used for restoring populations of coral species with different life-history traits, and the techniques can rapidly increase larval recruitment rates on degraded reef areas, hence catalysing the regeneration of declining coral populations.

Settlement of larvae from four families of corals in response to a crustose coralline alga and its biochemical morphogens

Healthy benthic substrates that induce coral larvae to settle are necessary for coral recovery. Yet, the biochemical cues required to induce coral settlement have not been identified for many taxa. Here we tested the ability of the crustose coralline alga (CCA) Porolithon onkodes to induce attachment and metamorphosis, collectively termed settlement, of larvae from 15 ecologically important coral species from the families Acroporidae, Merulinidae, Poritidae, and Diploastreidae. Live CCA fragments, ethanol extracts, and hot aqueous extracts of P. onkodes induced settlement (> 10%) for 11, 7, and 6 coral species, respectively. Live CCA fragments were the most effective inducer, achieving over 50% settlement for nine species. The strongest settlement responses were observed in Acropora spp.; the only non-acroporid species that settled over 50% were Diploastrea heliopora, Goniastrea retiformis, and Dipsastraea pallida. Larval settlement was reduced in treatments with chemical extracts compared with live CCA, although high settlement (> 50%) was reported for six acroporid species in response to ethanol extracts of CCA. All experimental treatments failed (< 10%) to induce settlement in Montipora aequituberculata, Mycedium elephantotus, and Porites cylindrica. Individual species responded heterogeneously to all treatments, suggesting that none of the cues represent a universal settlement inducer. These results challenge the commonly-held notion that CCA ubiquitously induces coral settlement, and emphasize the critical need to assess additional cues to identify natural settlement inducers for a broad range of coral taxa.