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For: Medyukhina A, Blickensdorf M, Cseresnyés Z, Ruef N, Stein JV, Figge MT. Dynamic spherical harmonics approach for shape classification of migrating cells. Sci Rep 2020;10:6072. [PMID: 32269257 PMCID: PMC7142146 DOI: 10.1038/s41598-020-62997-7] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2019] [Accepted: 03/24/2020] [Indexed: 11/19/2022]  Open
Number Cited by Other Article(s)
1
Bertuzzi M, Howell GJ, Thomson DD, Fortune-Grant R, Möslinger A, Dancer P, Van Rhijn N, Motsi N, Codling A, Bignell EM. Epithelial uptake leads to fungal killing in vivo and is aberrant in COPD-derived epithelial cells. iScience 2024;27:109939. [PMID: 38846001 PMCID: PMC11154633 DOI: 10.1016/j.isci.2024.109939] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Revised: 12/07/2023] [Accepted: 05/06/2024] [Indexed: 06/09/2024]  Open
2
Valizadeh G, Babapour Mofrad F. Parametrized pre-trained network (PPNet): A novel shape classification method using SPHARMs for MI detection. EXPERT SYSTEMS WITH APPLICATIONS 2023;228:120368. [DOI: 10.1016/j.eswa.2023.120368] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/11/2024]
3
Govek KW, Nicodemus P, Lin Y, Crawford J, Saturnino AB, Cui H, Zoga K, Hart MP, Camara PG. CAJAL enables analysis and integration of single-cell morphological data using metric geometry. Nat Commun 2023;14:3672. [PMID: 37339989 DOI: 10.1038/s41467-023-39424-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Accepted: 06/12/2023] [Indexed: 06/22/2023]  Open
4
Valizadeh G, Babapour Mofrad F. A Comprehensive Survey on Two and Three-Dimensional Fourier Shape Descriptors: Biomedical Applications. ARCHIVES OF COMPUTATIONAL METHODS IN ENGINEERING 2022;29:4643-4681. [DOI: 10.1007/s11831-022-09750-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2021] [Accepted: 04/11/2022] [Indexed: 10/12/2024]
5
Dalmasso G, Musy M, Niksic M, Robert-Moreno A, Badía-Careaga C, Sanz-Ezquerro JJ, Sharpe J. 4D reconstruction of murine developmental trajectories using spherical harmonics. Dev Cell 2022;57:2140-2150.e5. [PMID: 36055247 PMCID: PMC9481268 DOI: 10.1016/j.devcel.2022.08.005] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Revised: 05/02/2022] [Accepted: 08/11/2022] [Indexed: 11/30/2022]
6
Cavanagh H, Kempe D, Mazalo JK, Biro M, Endres RG. T cell morphodynamics reveal periodic shape oscillations in three-dimensional migration. J R Soc Interface 2022;19:20220081. [PMID: 35537475 PMCID: PMC9090490 DOI: 10.1098/rsif.2022.0081] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]  Open
7
Åhl H, Zhang Y, Jönsson H. High-Throughput 3D Phenotyping of Plant Shoot Apical Meristems From Tissue-Resolution Data. FRONTIERS IN PLANT SCIENCE 2022;13:827147. [PMID: 35519801 PMCID: PMC9062647 DOI: 10.3389/fpls.2022.827147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Accepted: 02/25/2022] [Indexed: 06/14/2023]
8
Belyaev I, Praetorius JP, Medyukhina A, Figge MT. Enhanced segmentation of label-free cells for automated migration and interaction tracking. Cytometry A 2021;99:1218-1229. [PMID: 34060210 DOI: 10.1002/cyto.a.24466] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Accepted: 05/25/2021] [Indexed: 02/01/2023]
9
Simionato G, Hinkelmann K, Chachanidze R, Bianchi P, Fermo E, van Wijk R, Leonetti M, Wagner C, Kaestner L, Quint S. Red blood cell phenotyping from 3D confocal images using artificial neural networks. PLoS Comput Biol 2021;17:e1008934. [PMID: 33983926 PMCID: PMC8118337 DOI: 10.1371/journal.pcbi.1008934] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2020] [Accepted: 04/01/2021] [Indexed: 12/15/2022]  Open
10
Valizadeh G, Babapour Mofrad F, Shalbaf A. Parametric-based feature selection via spherical harmonic coefficients for the left ventricle myocardial infarction screening. Med Biol Eng Comput 2021;59:1261-1283. [PMID: 33983494 DOI: 10.1007/s11517-021-02372-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2020] [Accepted: 04/27/2021] [Indexed: 11/30/2022]
11
Kalinin AA, Hou X, Ade AS, Fon GV, Meixner W, Higgins GA, Sexton JZ, Wan X, Dinov ID, O'Meara MJ, Athey BD. Valproic acid-induced changes of 4D nuclear morphology in astrocyte cells. Mol Biol Cell 2021;32:1624-1633. [PMID: 33909457 PMCID: PMC8684733 DOI: 10.1091/mbc.e20-08-0502] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
12
Heryanto YD, Cheng CY, Uchida Y, Mimura K, Ishii M, Yamada R. Integrated analysis of cell shape and movement in moving frame. Biol Open 2021;10:bio058512. [PMID: 33664097 PMCID: PMC8015248 DOI: 10.1242/bio.058512] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2020] [Accepted: 02/11/2021] [Indexed: 11/20/2022]  Open
13
Woloshuk A, Khochare S, Almulhim AF, McNutt AT, Dean D, Barwinska D, Ferkowicz MJ, Eadon MT, Kelly KJ, Dunn KW, Hasan MA, El-Achkar TM, Winfree S. In Situ Classification of Cell Types in Human Kidney Tissue Using 3D Nuclear Staining. Cytometry A 2020;99:707-721. [PMID: 33252180 DOI: 10.1002/cyto.a.24274] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2020] [Revised: 10/29/2020] [Accepted: 11/26/2020] [Indexed: 12/30/2022]
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