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Mishra S, Gantayat S, Dhara C, Bhatt A, Singh M, Vijayakumar S, Rajput M. Advances in bioinspired nanomaterials managing microbial biofilms and virulence: A critical analysis. Microb Pathog 2024; 193:106738. [PMID: 38857710 DOI: 10.1016/j.micpath.2024.106738] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2023] [Revised: 05/30/2024] [Accepted: 06/07/2024] [Indexed: 06/12/2024]
Abstract
Microbial virulence and biofilm formation stand as a big concern against the goal of achieving a green and sustainable future. Microbial pathogenesis is the process by which the microbes (bacterial, fungal, and viral) cause illness in their respective host organism. 'Nanotechnology' is a state-of-art discipline to address this problem. The use of conventional techniques against microbial proliferation has been challenging against the environment. To tackle this problem, there has been a revolution in this multi-disciplinary field, to address the aspect of bioinspired nanomaterials in the antibiofilm and antimicrobial sector. Bioinspired nanomaterials prove to be a potential antibiofilm and antimicrobial agent as they are non-hazardous to the environment and mostly synthesized using a single-step reduction protocol. They exhibit synergistic effects against bacterial, fungal, and viral pathogens and thereby, control the virulence. In this literature review, we have elucidated the potential of bioinspired nanoparticles as well as nanomaterials as a promising anti-microbial treatment pedagogy and throw light on the advancements in how smart photo-switchable platforms have been designed to exhibit both bacterial releasing as well as bacterial-killing properties. Certain limitations and possible outcomes of these bio-based nanomaterials have been discussed in the hope of achieving a green and sustainable ecosystem.
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Affiliation(s)
- Sudhanshu Mishra
- School of Biosciences, Apeejay Stya University, Sohna-Palwal Road, Gurugram, Haryana, 122103, India.
| | - Saumyatika Gantayat
- School of Biosciences, Apeejay Stya University, Sohna-Palwal Road, Gurugram, Haryana, 122103, India
| | - Chandrajeet Dhara
- School of Biosciences, Apeejay Stya University, Sohna-Palwal Road, Gurugram, Haryana, 122103, India
| | - Ayush Bhatt
- School of Biosciences, Apeejay Stya University, Sohna-Palwal Road, Gurugram, Haryana, 122103, India
| | - Monika Singh
- Department of Biotechnology, School of Applied and Life Sciences (SALS), Uttaranchal University, Arcadia Grant, P.O., Chandanwari, Dehradun, 248007, India
| | - Sekar Vijayakumar
- Center for Global Health Research (CGHR), Saveetha Medical College, Saveetha Institute of Medical and Technical Sciences (SIMATS), Saveetha University, Chennai, India; Marine College, Shandong University, Weihai, China, 264209
| | - Minakshi Rajput
- Department of Biotechnology, School of Applied and Life Sciences (SALS), Uttaranchal University, Arcadia Grant, P.O., Chandanwari, Dehradun, 248007, India; Gurukula Kangri (Deemed to be University), Haridwar, Uttarakhand, 249404, India.
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Alshangiti DM, Ghobashy MM, Alqahtani HA, El-Damhougy TK, Madani M. The energetic and physical concept of gold nanorod-dependent fluorescence in cancer treatment and development of new photonic compounds|review. RSC Adv 2023; 13:32223-32265. [PMID: 37928851 PMCID: PMC10620648 DOI: 10.1039/d3ra05487j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2023] [Accepted: 10/10/2023] [Indexed: 11/07/2023] Open
Abstract
The optical features of gold nanorods (GNR) may be precisely controlled by manipulating their size, shape, and aspect ratio. This review explores the impact of these parameters on the optical tuning of (GNR). By altering the experimental conditions, like the addition of silver ions during the seed-mediated growth process, the aspect ratio of (GNR) may be regulated. The shape is trans from spherical to rod-like structures resulting in noticeable changes in the nanoparticles surface plasmons resonance (SPR) bands. The longitudinal SPR band, associated with electron oscillations along the long axis, exhibits a pronounced red shift into the (NIR) region as the aspect ratio increases. In contrast, the transverse SPR band remains relate unchanged. Using computational methods like the discrete dipole approximation (DDA) allows for analyzing absorption, scattering, and total extinction features of gold (G) nanoparticles. Studies have shown that increasing the aspect ratio enhances the scattering efficiency, indicating a higher scattering quantum yield (QY). These findings highlight the importance of size, shape, and aspect ratio in controlling the optical features of (GNR) providing valuable insights for various uses in nanophotonics and plasmonic-dependent fluorescence in cancer treatment and developing new photonic compound NRs.
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Affiliation(s)
- Dalal Mohamed Alshangiti
- College of Science and Humanities-Jubail, Imam Abdulrahman Bin Faisal University Jubail Saudi Arabia
| | - Mohamed Mohamady Ghobashy
- Radiation Research of Polymer Chemistry Department, National Center for Radiation Research and Technology (NCRRT), Atomic Energy Authority P.O. Box 29, Nasr City Cairo Egypt
| | - Haifa A Alqahtani
- Department of Biology, College of Science, Imam Abdulrahman Bin Faisal University Dammam 31441 Saudi Arabia
| | - Tasneam K El-Damhougy
- Department of Chemistry, Faculty of Science (Girls), Al-Azhar University P.O. Box 11754, Yousef Abbas Str., Nasr City Cairo Egypt
| | - Mohamed Madani
- College of Science and Humanities-Jubail, Imam Abdulrahman Bin Faisal University Jubail Saudi Arabia
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Mohammadi MH, Eskandari M, Fathi D. Morphological investigation and 3D simulation of plasmonic nanostructures to improve the efficiency of perovskite solar cells. Sci Rep 2023; 13:18584. [PMID: 37903845 PMCID: PMC10616107 DOI: 10.1038/s41598-023-46098-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Accepted: 10/27/2023] [Indexed: 11/01/2023] Open
Abstract
The light absorption process is a key factor in improving the performance of perovskite solar cells (PSCs). Using arrays of metal nanostructures on semiconductors such as perovskite (CH3NH3PbI3), the amount of light absorption in these layers is significantly increased. Metal nanostructures have been considered for their ability to excite plasmons (collective oscillations of free electrons). Noble metal nanoparticles placed inside solar cells, by increasing the scattering of the incident light, effectively increase the optical absorption inside PSCs; this in turn increases the electric current generated in the photovoltaic device. In this work, by calculating the cross-sectional area of dispersion and absorption on gold (Au) nanoparticles, the effects of the position of nanoparticles in the active layer (AL) and their morphology on the increase of absorption within the PSC are investigated. The optimal position of the plasmonic nanoparticle was obtained in the middle of the AL using a three-dimensional simulation method. Then, three different morphologies of nano-sphere, nano-star and nano-cubes were investigated, where the short-circuit currents (Jsc) for these three nanostructures were obtained equal to 19.01, 18.66 and 20.03 mA/cm2, respectively. In our study, the best morphology of the nanostructure according to the Jsc value was related to the nano-cube, in which the device power conversion efficiency was equal to 16.20%, which is about 15% better than the PSC with the planar architecture.
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Affiliation(s)
| | - Mehdi Eskandari
- Nanomaterial Research Group, Academic Center for Education, Culture and Research (ACECR) on TMU, Tehran, Iran
| | - Davood Fathi
- Department of Electrical and Computer Engineering, Tarbiat Modares University (TMU), Tehran, Iran.
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Rubtsov S, Musin A, Danchuk V, Shatalov M, Prasad N, Zinigrad M, Yadgarov L. Plasmon-Enhanced Perovskite Solar Cells Based on Inkjet-Printed Au Nanoparticles Embedded into TiO 2 Microdot Arrays. NANOMATERIALS (BASEL, SWITZERLAND) 2023; 13:2675. [PMID: 37836316 PMCID: PMC10574114 DOI: 10.3390/nano13192675] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Revised: 09/22/2023] [Accepted: 09/27/2023] [Indexed: 10/15/2023]
Abstract
The exceptional property of plasmonic materials to localize light into sub-wavelength regimes has significant importance in various applications, especially in photovoltaics. In this study, we report the localized surface plasmon-enhanced perovskite solar cell (PSC) performance of plasmonic gold nanoparticles (AuNPs) embedded into a titanium oxide (TiO2) microdot array (MDA), which was deposited using the inkjet printing technique. The X-ray (XRD) analysis of MAPI (methyl ammonium lead iodide) perovskite films deposited on glass substrates with and without MDA revealed no destructive effect of MDA on the perovskite structure. Moreover, a 12% increase in the crystallite size of perovskite with MDA was registered. Scanning electron microscopy (SEM) and high-resolution transmission electron microscopy (HR-TEM) techniques revealed the morphology of the TiO2_MDA and TiO2-AuNPs_MDA. The finite-difference time-domain (FDTD) simulation was employed to evaluate the absorption cross-sections and local field enhancement of AuNPs in the TiO2 and TiO2/MAPI surrounding media. Reflectance UV-Vis spectra of the samples comprising glass/TiO2 ETL/TiO2_MDA (ETL-an electron transport layer) with and without AuNPs in TiO2_MDA were studied, and the band gap (Eg) values of MAPI have been calculated using the Kubelka-Munk equation. The MDA introduction did not influence the band gap value, which remained at ~1.6 eV for all the samples. The photovoltaic performance of the fabricated PSC with and without MDA and the corresponding key parameters of the solar cells have also been studied and discussed in detail. The findings indicated a significant power conversion efficiency improvement of over 47% in the PSCs with the introduction of the TiO2-AuNPs_MDA on the ETL/MAPI interface compared to the reference device. Our study demonstrates the significant enhancement achieved in halide PSC by utilizing AuNPs within a TiO2_MDA. This approach holds great promise for advancing the efficiency and performance of photovoltaic devices.
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Affiliation(s)
- Sofia Rubtsov
- Department of Chemical Engineering, Biotechnology and Materials, Faculty of Engineering, Ariel University, Ariel 4076414, Israel; (S.R.); (V.D.); (M.S.); (N.P.); (M.Z.)
| | - Albina Musin
- Physics Department, Faculty of Natural Sciences, Ariel University, Ariel 4076414, Israel;
| | - Viktor Danchuk
- Department of Chemical Engineering, Biotechnology and Materials, Faculty of Engineering, Ariel University, Ariel 4076414, Israel; (S.R.); (V.D.); (M.S.); (N.P.); (M.Z.)
| | - Mykola Shatalov
- Department of Chemical Engineering, Biotechnology and Materials, Faculty of Engineering, Ariel University, Ariel 4076414, Israel; (S.R.); (V.D.); (M.S.); (N.P.); (M.Z.)
| | - Neena Prasad
- Department of Chemical Engineering, Biotechnology and Materials, Faculty of Engineering, Ariel University, Ariel 4076414, Israel; (S.R.); (V.D.); (M.S.); (N.P.); (M.Z.)
| | - Michael Zinigrad
- Department of Chemical Engineering, Biotechnology and Materials, Faculty of Engineering, Ariel University, Ariel 4076414, Israel; (S.R.); (V.D.); (M.S.); (N.P.); (M.Z.)
| | - Lena Yadgarov
- Department of Chemical Engineering, Biotechnology and Materials, Faculty of Engineering, Ariel University, Ariel 4076414, Israel; (S.R.); (V.D.); (M.S.); (N.P.); (M.Z.)
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Pedrosa TDL, Farooq S, de Araujo RE. Selecting High-Performance Gold Nanorods for Photothermal Conversion. NANOMATERIALS (BASEL, SWITZERLAND) 2022; 12:4188. [PMID: 36500811 PMCID: PMC9737450 DOI: 10.3390/nano12234188] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Revised: 11/11/2022] [Accepted: 11/21/2022] [Indexed: 06/17/2023]
Abstract
In this work, we establish a new paradigm on identifying optimal arbitrarily shaped metallic nanostructures for photothermal applications. Crucial thermo-optical parameters that rule plasmonic heating are appraised, exploring a nanoparticle size-dependence approach. Our results indicate two distinct figures of merit for the optimization of metallic nanoheaters, under both non-cumulative femtosecond and continuum laser excitation. As a case study, gold nanorods are evaluated for infrared photothermal conversion in water, and the influence of the particle length and diameter are depicted. For non-cumulative femtosecond pulses, efficient photothermal conversion is observed for gold nanorods of small volumes. For continuous wave (CW) excitation at 800 nm and 1064 nm, the optimal gold nanorod dimensions (in water) are, respectively, 90 × 25nm and 150 × 30 nm. Figure of Merit (FoM) variations up to 700% were found considering structures with the same peak wavelength. The effect of collective heating is also appraised. The designing of high-performance plasmonic nanoparticles, based on quantifying FoM, allows a rational use of nanoheaters for localized photothermal applications.
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Affiliation(s)
- Túlio de L. Pedrosa
- Laboratory of Biomedical Optics and Imaging, Federal University of Pernambuco, Recife 50740-540, Brazil
| | - Sajid Farooq
- Center for Lasers and Applications, Instituto de Pesquisas Energeticas e Nucleares, IPEN—CNEN, Sao Paulo 05508-000, Brazil
| | - Renato E. de Araujo
- Laboratory of Biomedical Optics and Imaging, Federal University of Pernambuco, Recife 50740-540, Brazil
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Jatav H, Shabaninezhad M, Mičetić M, Chakravorty A, Mishra A, Schwartzkopf M, Chumakov A, Roth SV, Kabiraj D. A Combinatorial Study Investigating the Growth of Ultrasmall Embedded Silver Nanoparticles upon Thermal Annealing. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:11983-11993. [PMID: 36150131 DOI: 10.1021/acs.langmuir.2c01730] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Ultrasmall nanoparticles (NPs) with a high active surface area are essential for optoelectronic and photovoltaic applications. However, the structural stability and sustainability of these ultrasmall NPs at higher temperatures remain a critical problem. Here, we have synthesized the nanocomposites (NCs) of Ag NPs inside the silica matrix using the atom beam co-sputtering technique. The post-deposition growth of the embedded Ag NPs is systematically investigated at a wide range of annealing temperatures (ATs). A novel, fast, and effective procedure, correlating the experimental (UV-vis absorption results) and theoretical (quantum mechanical modeling, QMM) results, is used to estimate the size of NPs. The QMM-based simulation, employed for this work, is found to be more accurate in reproducing the absorption spectra over the classical/modified Drude model, which fails to predict the expected shift in the LSPR for ultrasmall NPs. Unlike the classical Drude model, the QMM incorporates the intraband transition of the conduction band electrons to calculate the effective dielectric function of metallic NCs, which is the major contribution of LSPR shifts for ultrasmall NPs. In this framework, a direct comparison is made between experimentally and theoretically observed LSPR peak positions, and it is observed that the size of NPs grows from 3 to 18 nm as AT increases from room temperature to 900 °C. Further, in situ grazing-incidence small- & wide-angle X-ray scattering and transmission electron microscopy measurements are employed to comprehend the growth of Ag NPs and validate the UV + QMM results. We demonstrate that, unlike chemically grown NPs, the embedded Ag NPs ensure greater stability in size and remain in an ultrasmall regime up to 800 °C, and beyond this temperature, the size of NPs increases exponentially due to dominant Ostwald ripening. Finally, a three-stage mechanism is discussed to understand the process of nucleation and growth of the silica-embedded Ag NPs.
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Affiliation(s)
- Hemant Jatav
- Materials science department, Inter-University Accelerator Centre, Aruna Asaf Ali Marg, New Delhi 110067, India
| | - Masoud Shabaninezhad
- Department of Physics, Western Michigan University, Kalamazoo, Michigan, 49008, United States
| | - Maja Mičetić
- Ruđer Bošković Institute, Bijenička cesta 54, Zagreb 10000, Croatia
| | - Anusmita Chakravorty
- Materials science department, Inter-University Accelerator Centre, Aruna Asaf Ali Marg, New Delhi 110067, India
| | - Ambuj Mishra
- Materials science department, Inter-University Accelerator Centre, Aruna Asaf Ali Marg, New Delhi 110067, India
| | | | - Andrei Chumakov
- Deutsches Elektronen-Synchrotron (DESY), Notkestraße 85, D-22607 Hamburg, Germany
| | - Stephan V Roth
- Deutsches Elektronen-Synchrotron (DESY), Notkestraße 85, D-22607 Hamburg, Germany
- Department of Fibre and Polymer Technology, KTH Royal Institute of Technology, Teknikringen 56-58, SE-100 44 Stockholm, Sweden
| | - Debdulal Kabiraj
- Materials science department, Inter-University Accelerator Centre, Aruna Asaf Ali Marg, New Delhi 110067, India
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Kumela AG, Gemta AB, Desta TA, Kebede A. Noble classical and quantum approach to model the optical properties of metallic nanoparticles to enhance the sensitivity of optoplasmonic sensors. RSC Adv 2022; 12:16203-16214. [PMID: 35755132 PMCID: PMC9173576 DOI: 10.1039/d2ra00824f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Accepted: 04/20/2022] [Indexed: 12/22/2022] Open
Abstract
The bright light obtained from the quantum principle has a key role in the construction of optical sensors. Yet, theoretical and experimental work highlights the challenges of overcoming the high cost and low efficiency of such sensors. Therefore, we report a metallic nanoparticle-based metasurface plasmons polariton using quantum and classical models. We have investigated the material properties, absorption cross-section, scattering cross-section, and efficiency of the classical model. By quantizing light-matter interaction, the quantum features of light - degree of squeezing, correlation, and entanglement are quantified numerically and computationally. In addition, we note the penetration depth and propagation length from a hybrid model in order to enhance the optoplasmonic sensor performance for imaging, diagnosing, and early perception of cancer cells with label-free, direct, and real-time detection. Our study findings conclude that the frequency of incident light, size, shape, and type of nanoparticles has a significant impact on the optical properties of metallic nanoparticles and the nonlinear optical properties of metallic nanoparticles are dynamic, enhancing the sensitivity of the optoplasmonic sensor. Moreover, the resulting bright light shows the systematic potential for further medical image processing.
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Affiliation(s)
| | | | | | - Alemu Kebede
- Adama Science and Technology University Adama Ethiopia
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A Parabola-like Gold Nanobowtie on a Sapphire Substrate as a Nano-Cavity. PHOTONICS 2022. [DOI: 10.3390/photonics9030193] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Plasmonic, metallic nanostructures have attracted much interest for their ability to manipulate light on a subwavelength scale and for their related applications in various fields. In this work, a parabola-like gold nanobowtie (PGNB) on a sapphire substrate was designed as a nano-cavity for confining light waves in a nanoscale gap region. The near-field optical properties of the innovative PGNB structure were studied comprehensively, taking advantage of the time-resolved field calculation based on a finite-difference time-domain algorithm (FDTD). The calculation result showed that the resonance wavelength of the nano-cavity was quite sensitive to the geometry of the PGNB. The values that related to the scattering and absorption properties of the PGNB, such as the scattering cross section, absorption cross section, extinction cross section, scattering ratio, and also the absorption ratio, were strongly dependent on the geometrical parameters which affected the surface area of the nanobowtie. Increased sharpness of the gold tips on the parabola-like nano-wings benefited the concentration of high-density charges with opposite electric properties in the narrow gold tips with limited volume, thus, resulting in a highly enhanced electric field in the nano-cavity under illumination of the light wave. Reduction of the gap size between the two gold nano-tips, namely, the size of the nano-cavity, decreased the distance that the electric potential produced by the highly concentrated charges on the surface of each gold nano-tip had to jump across, therefore, causing a significantly enhanced field in the nano-cavity. Further, alignment of the linearly polarized electric field of the incident light wave with the symmetric axis of the PGNB efficiently enabled the free electrons in the PGNB to concentrate on the surface of the sharp gold tips with a high density, thus, strongly improving the field across the nano-cavity. The research provides a new insight for future design, nanofabrication, and characterization of PGNBs for applications in devices that relate to enhancing photons emission, improving efficiency for energy harvesting, and improving sensitivity for infrared detection.
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Barhoum A, García-Betancourt ML, Jeevanandam J, Hussien EA, Mekkawy SA, Mostafa M, Omran MM, S. Abdalla M, Bechelany M. Review on Natural, Incidental, Bioinspired, and Engineered Nanomaterials: History, Definitions, Classifications, Synthesis, Properties, Market, Toxicities, Risks, and Regulations. NANOMATERIALS (BASEL, SWITZERLAND) 2022; 12:177. [PMID: 35055196 PMCID: PMC8780156 DOI: 10.3390/nano12020177] [Citation(s) in RCA: 50] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Revised: 12/26/2021] [Accepted: 12/31/2021] [Indexed: 02/04/2023]
Abstract
Nanomaterials are becoming important materials in several fields and industries thanks to their very reduced size and shape-related features. Scientists think that nanoparticles and nanostructured materials originated during the Big Bang process from meteorites leading to the formation of the universe and Earth. Since 1990, the term nanotechnology became very popular due to advances in imaging technologies that paved the way to specific industrial applications. Currently, nanoparticles and nanostructured materials are synthesized on a large scale and are indispensable for many industries. This fact fosters and supports research in biochemistry, biophysics, and biochemical engineering applications. Recently, nanotechnology has been combined with other sciences to fabricate new forms of nanomaterials that could be used, for instance, for diagnostic tools, drug delivery systems, energy generation/storage, environmental remediation as well as agriculture and food processing. In contrast with traditional materials, specific features can be integrated into nanoparticles, nanostructures, and nanosystems by simply modifying their scale, shape, and composition. This article first summarizes the history of nanomaterials and nanotechnology. Followed by the progress that led to improved synthesis processes to produce different nanoparticles and nanostructures characterized by specific features. The content finally presents various origins and sources of nanomaterials, synthesis strategies, their toxicity, risks, regulations, and self-aggregation.
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Affiliation(s)
- Ahmed Barhoum
- NanoStruc Research Group, Chemistry Department, Faculty of Science, Helwan University, Helwan 11795, Egypt; (E.A.H.); (M.M.)
- School of Chemical Sciences, Dublin City University, D09 V209 Dublin, Ireland
| | | | - Jaison Jeevanandam
- CQM—Centro de Química da Madeira, MMRG, Campus da Penteada, Universidade da Madeira, 9020-105 Funchal, Portugal;
| | - Eman A. Hussien
- NanoStruc Research Group, Chemistry Department, Faculty of Science, Helwan University, Helwan 11795, Egypt; (E.A.H.); (M.M.)
| | - Sara A. Mekkawy
- Chemistry Department, Faculty of Science, Helwan University, Helwan 11795, Egypt; (S.A.M.); (M.M.O.); (M.S.A.)
| | - Menna Mostafa
- NanoStruc Research Group, Chemistry Department, Faculty of Science, Helwan University, Helwan 11795, Egypt; (E.A.H.); (M.M.)
| | - Mohamed M. Omran
- Chemistry Department, Faculty of Science, Helwan University, Helwan 11795, Egypt; (S.A.M.); (M.M.O.); (M.S.A.)
| | - Mohga S. Abdalla
- Chemistry Department, Faculty of Science, Helwan University, Helwan 11795, Egypt; (S.A.M.); (M.M.O.); (M.S.A.)
| | - Mikhael Bechelany
- Institut Européen des Membranes, IEM, UMR 5635, Université Montpellier, ENSCM, CNRS, 34000 Montpellier, France
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Nochebuena J, Naseem-Khan S, Cisneros GA. Development and application of quantum mechanics/molecular mechanics methods with advanced polarizable potentials. WILEY INTERDISCIPLINARY REVIEWS. COMPUTATIONAL MOLECULAR SCIENCE 2021; 11:e1515. [PMID: 34367343 PMCID: PMC8341087 DOI: 10.1002/wcms.1515] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2020] [Accepted: 12/19/2020] [Indexed: 01/02/2023]
Abstract
Quantum mechanics/molecular mechanics (QM/MM) simulations are a popular approach to study various features of large systems. A common application of QM/MM calculations is in the investigation of reaction mechanisms in condensed-phase and biological systems. The combination of QM and MM methods to represent a system gives rise to several challenges that need to be addressed. The increase in computational speed has allowed the expanded use of more complicated and accurate methods for both QM and MM simulations. Here, we review some approaches that address several common challenges encountered in QM/MM simulations with advanced polarizable potentials, from methods to account for boundary across covalent bonds and long-range effects, to polarization and advanced embedding potentials.
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Affiliation(s)
- Jorge Nochebuena
- Department of Chemistry, University of North Texas, Denton, Texas, USA
| | - Sehr Naseem-Khan
- Department of Chemistry, University of North Texas, Denton, Texas, USA
| | - G Andrés Cisneros
- Department of Chemistry, University of North Texas, Denton, Texas, USA
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