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Xin H, Zhang L, Wang H, Zhu X. Dynamic transcriptome analysis provides molecular insights into underground floral differentiation in Adonis Amurensis Regel & Radde. BMC Genom Data 2024; 25:33. [PMID: 38515034 PMCID: PMC10956236 DOI: 10.1186/s12863-024-01220-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2023] [Accepted: 03/13/2024] [Indexed: 03/23/2024] Open
Abstract
Understanding flower developmental processes is a prerequisite for improving flowering 'plants' production. Adonis amurensis is a fascinating spring ephemeral plant that develops its flower organs underground. Nevertheless, knowledge of the molecular mechanisms driving this particular process is scarce. Herein, we examined transcriptional changes during underground flower differentiation in A. amurensis and unveiled key differently regulated genes and pathways. High-throughput RNA sequencing of meristems at different flower developmental stages, including flower primordium (FP), sepal stage (SE), perianth primordium (PE), stamen stage (ST), and pistil stage (PI), identified 303,234 unigenes that showed 44.79% similarity with sequences in Aquilegia coerulea. Correlations, principal component, and differentially expressed genes (DEGs) analyses revealed that few molecular changes occurred during the transition from PE to ST. Many DEGs exhibited stage-specific regulations. Transcription factor (TF) and phytohormone family genes are critical regulators of the floral differentiation process in A. amurensis. The most differentially regulated TFs were MADS, FAR1, MYBs, AP2/ERF, B3, C2H2, and LOBs. We filtered out 186 candidate genes for future functional studies, including 18 flowering/circadian-related, 32 phytohormone-related, and TF family genes. Our findings deepen our understanding of the underground flower differentiation process and offer critical resources to dissect its regulatory network in A. amurensis. These findings establish a foundational platform for researchers dedicated to exploring the unique phenotypic characteristics of this specific flowering modality and delving into the intricate molecular mechanisms underpinning its regulation and expression.
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Affiliation(s)
- Hui Xin
- School of Landscape Architecture, Changchun University, 6543 Weixing Road, Changchun, China
| | - Lifan Zhang
- College of Life Sciences, Tonghua Normal University, 950, Yucai Road, Tonghua, China
| | - Hongtao Wang
- College of Life Sciences, Tonghua Normal University, 950, Yucai Road, Tonghua, China
| | - Xingzun Zhu
- School of Landscape Architecture, Changchun University, 6543 Weixing Road, Changchun, China.
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Barahona NA, Vergara PM, Alaniz AJ, Carvajal MA, Castro SA, Quiroz M, Hidalgo-Corrotea CM, Fierro A. Understanding how environmental degradation, microclimate, and management shape honey production across different spatial scales. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:12257-12270. [PMID: 38227262 DOI: 10.1007/s11356-024-31913-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2023] [Accepted: 01/03/2024] [Indexed: 01/17/2024]
Abstract
Although the abundance, survival, and pollination performance of honeybees are sensitive to changes in habitat and climate conditions, the processes by which these effects are transmitted to honey production and interact with beekeeping management are not completely understood. Climate change, habitat degradation, and beekeeping management affect honey yields, and may also interact among themselves resulting in indirect effects across spatial scales. We conducted a 2-year, multi-scale study on Chiloe Island (northern Patagonia), where we evaluated the most relevant environmental and management drivers of honey produced by stationary beekeepers. We found that the effects of microclimate, habitat, and management variables changed with the spatial scale. Among the environmental variables, minimum temperature, and cover of the invasive shrub, gorse (Ulex europaeus) had the strongest detrimental impacts on honey production at spatial scales finer than 4 km. Specialized beekeepers who adopted conventional beekeeping and had more mother colonies were more productive. Mean and minimum temperatures interacted with the percentage of mother colonies, urban cover, and beekeeping income. The gorse cover increased by the combination of high temperatures and the expansion of urban lands, while landscape attributes, such as Eucalyptus plantation cover, influenced beekeeping management. Results suggest that higher temperatures change the available forage or cause thermal stress to honeybees, while invasive shrubs are indicators of degraded habitats. Climate change and habitat degradation are two interrelated environmental phenomena whose effects on beekeeping can be mitigated through adaptive management and habitat restoration.
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Affiliation(s)
- Nicolás A Barahona
- Departamento de Gestión Agraria, Facultad Tecnológica, Universidad de Santiago de Chile (USACH), Santiago, Chile
| | - Pablo M Vergara
- Departamento de Gestión Agraria, Facultad Tecnológica, Universidad de Santiago de Chile (USACH), Santiago, Chile.
| | - Alberto J Alaniz
- Departamento de Gestión Agraria, Facultad Tecnológica, Universidad de Santiago de Chile (USACH), Santiago, Chile
- Departamento de Ingeniería Geoespacial y Ambiental, Facultad Tecnológica, Universidad de Santiago de Chile (USACH), Santiago, Chile
| | - Mario A Carvajal
- Departamento de Gestión Agraria, Facultad Tecnológica, Universidad de Santiago de Chile (USACH), Santiago, Chile
| | - Sergio A Castro
- Departamento de Biología, Facultad de Química y Biología, Universidad de Santiago de Chile (USACH), Santiago, Chile
| | - Madelaine Quiroz
- Departamento de Gestión Agraria, Facultad Tecnológica, Universidad de Santiago de Chile (USACH), Santiago, Chile
| | - Claudia M Hidalgo-Corrotea
- Departamento de Gestión Agraria, Facultad Tecnológica, Universidad de Santiago de Chile (USACH), Santiago, Chile
| | - Andrés Fierro
- Departamento de Gestión Agraria, Facultad Tecnológica, Universidad de Santiago de Chile (USACH), Santiago, Chile
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Park HJ, Nam BE, Lee G, Kim SG, Joo Y, Kim JG. Ontogeny-dependent effects of elevated CO 2 and watering frequency on interaction between Aristolochia contorta and its herbivores. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 838:156065. [PMID: 35597357 DOI: 10.1016/j.scitotenv.2022.156065] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2022] [Revised: 05/15/2022] [Accepted: 05/16/2022] [Indexed: 06/15/2023]
Abstract
Effects of environmental change on plants can differ due to sequential changes in their life-history strategies (i.e., ontogenetic variations). The fitness of herbivorous insects by physiological changes of the host plant could be affected depending on their diet breadth. However, little is known regarding the combinational effects of plant ontogeny and climate change on plant-herbivore interactions. This study examined the plant ontogeny-dependent effects of climate change on the interaction between a host plant (Aristolochia contorta), its specialist herbivore (Sericinus montela), and a generalist herbivore (Spodoptera exigua). Plants were grown under a factorial design of two distinct CO2 concentrations (ambient, 400 ppm; elevated, 560 ppm) and two watering frequencies (control, once a week; increased, twice a week). Plant ontogeny ameliorated the effects of climate change by altering its defensive traits, where nutrient-related factors were cumulatively affected by climate change. Herbivore performance was assessed at three different plant ontogenetic stages (1st-year juvenile, 1st-year senescence, and 2nd-year juvenile). Elevated CO2 levels reduced the growth and survival of the specialist herbivore, whereas increased watering frequency partially alleviated this reduced performance. Generalist herbivore performance slightly increased under elevated CO2 levels with progressing ontogenetic stages. The effects of climate change, both elevated CO2 and increased watering frequency were weaker in 2nd-year juveniles than in 1st-year juveniles. Elevated CO2 levels detrimentally affected the nutritional quality of A. contorta leaves. The effects of climate change on both specialist and generalist herbivore performance differed as plant ontogenetic stage proceeded. Increased growth rates and survival of the generalist herbivore at the latter ontogenetic stage might negatively affect the population dynamics of a specialist herbivore. This study suggests that biases are possible when the plant-herbivore interaction under a changing environment is predicted from a singular plant ontogenetic stage.
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Affiliation(s)
- Hyun Jun Park
- Department of Biology Education, Seoul National University, Seoul 08826, Republic of Korea
| | - Bo Eun Nam
- Department of Biology Education, Seoul National University, Seoul 08826, Republic of Korea; Department of Biology, Chungbuk National University, Cheongju 28644, Republic of Korea
| | - Gisuk Lee
- Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
| | - Sang-Gyu Kim
- Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
| | - Youngsung Joo
- Department of Biology, Chungbuk National University, Cheongju 28644, Republic of Korea; Department of Biological Sciences and Biotechnology, Chungbuk National University, Cheongju 28644, Republic of Korea.
| | - Jae Geun Kim
- Department of Biology Education, Seoul National University, Seoul 08826, Republic of Korea; Center for Education Research, Seoul National University, Seoul 08826, Republic of Korea.
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Effect of Selected Meteorological Variables on Full Flowering of Some Forest Herbs in the Western Carpathians. ATMOSPHERE 2022. [DOI: 10.3390/atmos13020195] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/10/2022]
Abstract
At present, temperate forest ecosystems are endangered by both abiotic and biotic factors. The effects of abiotic components, e.g., meteorological variables, are constantly studied. However, the detailed mechanisms affecting the phenology of plants are still unknown. Two meteorological variables (air temperature and cumulative precipitation) were analysed for the period from 1995 to 2020 in order to determine which factor which has a more significant effect on onset of the full-flowering (FF) phenophase. A set of nine forest herbs, representing different phenological groups from the viewpoint of flowering, was examined (early spring: Petasites albus and Pulmonaria officinalis; mid-spring: Carex pilosa and Dentaria bulbifera; late spring: Fragaria visa and Galium odoratum; early summer: Veronica officinalis; mid-summer: Mycelis muralis; and late summer: Campanula trachelium). Temperature-sum requirements and temporal trends in the onset of FF were also studied. The research conducted at the Ecological Experimental Station in the Kremnické vrchy Mountains (central Slovakia) at an altitude of 500 m asl. Our results show that the air temperature correlated more significantly with the date of onset of FF (r > 0.6, p < 0.001) than with precipitation. On average, the air-temperature sums, calculated for the threshold temperatures of 0 °C and 5 °C, increased from 142.9 °C (Petasites albus) to 1732.9 °C (Campanula trachelium) and from 223.4 °C (Petasites albus) to 1820.8 °C (Campanula trachelium), respectively. Temporal trends in the onset of FF over the last 26 years confirm shifts to earlier dates for most species (excepting early spring Petasites albus). In spring flowering species, shifts ranged from 2 days (0.07 day/year) for Pulmonaria officinalis to 8 days (0.30 day/year) for Carex pilosa. As for summer species, the onset of flowering shifted more significantly to earlier dates—from 7 days (0.27 day/year) for Campanula trachelium to 12 days (0.46 day/year) for Veronica officinalis. The observed trends were statistically significant (p < 0.05) for five examined species (Carex pilosa, Dentaria bulbifera, Fragaria vesca, Veronica officinalis and Mycelis muralis).
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