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Moreno-Mesonero L, Soler P, Alonso JL, Macián VJ, Moreno Y. Assessment of pathogenic protozoa in a drinking water treatment plant with UV treatment. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 366:121897. [PMID: 39043088 DOI: 10.1016/j.jenvman.2024.121897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2024] [Revised: 07/04/2024] [Accepted: 07/14/2024] [Indexed: 07/25/2024]
Abstract
Controlling drinking water treatment processes is essential to address water contamination and the adaptability of certain pathogenic protozoa. Sometimes, standard treatment methods and chlorine disinfection may prove insufficient in eliminating pathogenic protozoa. However, ultraviolet (UV) radiation has proved to be more effective than chlorine. This study aims to characterize the eukaryotic community of a drinking water treatment plant that applies a final UV disinfection treatment, focusing on pathogenic protozoa. Fifty water samples (raw water, before and after UV treatment) were evaluated to comply with regulation parameters and identify relevant protozoa. Despite physicochemical and microbiological parameters meeting the regulation, some potentially pathogenic protozoa, such as Blastocystis or Cryptosporidium, were still detected in very low relative abundances in treated water. It was found for the first time in Spain the pathogenic amoebae Naegleria fowleri in one river water, which was not found after the treatment. Moreover, Blastocystis subtypes ST1-ST6 were detected in this study in raw, before and after UV water samples. Blastocystis was only found in 2 two samples after UV treatment, with a very low abundance (≤0.02%). Obtained results demonstrate the effectiveness of water treatment in reducing the prevalence of pathogenic protozoa.
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Affiliation(s)
- L Moreno-Mesonero
- Research Institute of Water and Environmental Engineering (IIAMA). Universitat Politècnica de València, Camino de Vera s/n, 46022, Valencia, Spain.
| | - P Soler
- Research Institute of Water and Environmental Engineering (IIAMA). Universitat Politècnica de València, Camino de Vera s/n, 46022, Valencia, Spain; Empresa Mixta Valenciana de Aguas, S.A. (EMIVASA). Av. del Regne de València, 28, 46005, Valencia, Spain.
| | - J L Alonso
- Research Institute of Water and Environmental Engineering (IIAMA). Universitat Politècnica de València, Camino de Vera s/n, 46022, Valencia, Spain.
| | - V J Macián
- Empresa Mixta Valenciana de Aguas, S.A. (EMIVASA). Av. del Regne de València, 28, 46005, Valencia, Spain.
| | - Y Moreno
- Research Institute of Water and Environmental Engineering (IIAMA). Universitat Politècnica de València, Camino de Vera s/n, 46022, Valencia, Spain.
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2
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Karlicki M, Bednarska A, Hałakuc P, Maciszewski K, Karnkowska A. Spatio-temporal changes of small protist and free-living bacterial communities in a temperate dimictic lake: insights from metabarcoding and machine learning. FEMS Microbiol Ecol 2024; 100:fiae104. [PMID: 39039016 DOI: 10.1093/femsec/fiae104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Revised: 06/21/2024] [Accepted: 07/19/2024] [Indexed: 07/24/2024] Open
Abstract
Microbial communities, which include prokaryotes and protists, play an important role in aquatic ecosystems and influence ecological processes. To understand these communities, metabarcoding provides a powerful tool to assess their taxonomic composition and track spatio-temporal dynamics in both marine and freshwater environments. While marine ecosystems have been extensively studied, there is a notable research gap in understanding eukaryotic microbial communities in temperate lakes. Our study addresses this gap by investigating the free-living bacteria and small protist communities in Lake Roś (Poland), a dimictic temperate lake. Metabarcoding analysis revealed that both the bacterial and protist communities exhibit distinct seasonal patterns that are not necessarily shaped by dominant taxa. Furthermore, machine learning and statistical methods identified crucial amplicon sequence variants (ASVs) specific to each season. In addition, we identified a distinct community in the anoxic hypolimnion. We have also shown that the key factors shaping the composition of analysed community are temperature, oxygen, and silicon concentration. Understanding these community structures and the underlying factors is important in the context of climate change potentially impacting mixing patterns and leading to prolonged stratification.
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Affiliation(s)
- Michał Karlicki
- Institute of Evolutionary Biology, Biological and Chemical Research Centre, Faculty of Biology, University of Warsaw, ul. Żwirki i Wigury 101, 02-089 Warsaw, Poland
| | - Anna Bednarska
- Institute of Evolutionary Biology, Biological and Chemical Research Centre, Faculty of Biology, University of Warsaw, ul. Żwirki i Wigury 101, 02-089 Warsaw, Poland
- Department of Hydrobiology, Institute of Functional Biology and Ecology, Biological and Chemical Research Centre, Faculty of Biology, University of Warsaw, ul. Żwirki i Wigury 101, 02-089 Warsaw, Poland
| | - Paweł Hałakuc
- Institute of Evolutionary Biology, Biological and Chemical Research Centre, Faculty of Biology, University of Warsaw, ul. Żwirki i Wigury 101, 02-089 Warsaw, Poland
| | - Kacper Maciszewski
- Institute of Evolutionary Biology, Biological and Chemical Research Centre, Faculty of Biology, University of Warsaw, ul. Żwirki i Wigury 101, 02-089 Warsaw, Poland
- Institute of Parasitology, Biology Centre, Czech Academy of Sciences, Branišovská 1160/31, 370 05 České Budějovice, Czech Republic
| | - Anna Karnkowska
- Institute of Evolutionary Biology, Biological and Chemical Research Centre, Faculty of Biology, University of Warsaw, ul. Żwirki i Wigury 101, 02-089 Warsaw, Poland
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3
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Sieber G, Drees F, Shah M, Stach TL, Hohrenk-Danzouma L, Bock C, Vosough M, Schumann M, Sures B, Probst AJ, Schmidt TC, Beisser D, Boenigk J. Exploring the efficacy of metabarcoding and non-target screening for detecting treated wastewater. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 903:167457. [PMID: 37777125 DOI: 10.1016/j.scitotenv.2023.167457] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 09/25/2023] [Accepted: 09/27/2023] [Indexed: 10/02/2023]
Abstract
Wastewater treatment processes can eliminate many pollutants, yet remainder pollutants contain organic compounds and microorganisms released into ecosystems. These remainder pollutants have the potential to adversely impact downstream ecosystem processes, but their presence is currently not being monitored. This study was set out with the aim of investigating the effectiveness and sensitivity of non-target screening of chemical compounds, 18S V9 rRNA gene, and full-length 16S rRNA gene metabarcoding techniques for detecting treated wastewater in receiving waters. We aimed at assessing the impact of introducing 33 % treated wastewater into a triplicated large-scale mesocosm setup during a 10-day exposure period. Discharge of treated wastewater significantly altered the chemical signature as well as the microeukaryotic and prokaryotic diversity of the mesocosms. Non-target screening, 18S V9 rRNA gene, and full-length 16S rRNA gene metabarcoding detected these changes with significant covariation of the detected pattern between methods. The 18S V9 rRNA gene metabarcoding exhibited superior sensitivity immediately following the introduction of treated wastewater and remained one of the top-performing methods throughout the study. Full-length 16S rRNA gene metabarcoding demonstrated sensitivity only in the initial hour, but became insignificant thereafter. The non-target screening approach was effective throughout the experiment and in contrast to the metabarcoding methods the signal to noise ratio remained similar during the experiment resulting in an increasing relative strength of this method. Based on our findings, we conclude that all methods employed for monitoring environmental disturbances from various sources are suitable. The distinguishing factor of these methods is their ability to detect unknown pollutants and organisms, which sets them apart from previously utilized approaches and allows for a more comprehensive perspective. Given their diverse strengths, particularly in terms of temporal resolution, these methods are best suited as complementary approaches.
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Affiliation(s)
- Guido Sieber
- Biodiversity, University of Duisburg-Essen, Universitätsstraße 5, 45141 Essen, Germany; Centre for Water and Environmental Research, University of Duisburg-Essen, 45141 Essen, Universitätsstraße. 5, Germany.
| | - Felix Drees
- Instrumental Analytical Chemistry, University of Duisburg-Essen, 45141 Essen, Universitätsstraße 5, Germany
| | - Manan Shah
- Biodiversity, University of Duisburg-Essen, Universitätsstraße 5, 45141 Essen, Germany; Environmental Metagenomics, Research Center One Health Ruhr of the University Alliance Ruhr, Faculty of Chemistry, University of Duisburg-Essen, 45141 Essen, Germany
| | - Tom L Stach
- Centre for Water and Environmental Research, University of Duisburg-Essen, 45141 Essen, Universitätsstraße. 5, Germany; Environmental Metagenomics, Research Center One Health Ruhr of the University Alliance Ruhr, Faculty of Chemistry, University of Duisburg-Essen, 45141 Essen, Germany
| | - Lotta Hohrenk-Danzouma
- Instrumental Analytical Chemistry, University of Duisburg-Essen, 45141 Essen, Universitätsstraße 5, Germany
| | - Christina Bock
- Biodiversity, University of Duisburg-Essen, Universitätsstraße 5, 45141 Essen, Germany; Centre for Water and Environmental Research, University of Duisburg-Essen, 45141 Essen, Universitätsstraße. 5, Germany
| | - Maryam Vosough
- Centre for Water and Environmental Research, University of Duisburg-Essen, 45141 Essen, Universitätsstraße. 5, Germany; Instrumental Analytical Chemistry, University of Duisburg-Essen, 45141 Essen, Universitätsstraße 5, Germany
| | - Mark Schumann
- Aquatic Ecology, University of Duisburg-Essen, 45141 Essen, Universitätsstraße. 5, Germany
| | - Bernd Sures
- Centre for Water and Environmental Research, University of Duisburg-Essen, 45141 Essen, Universitätsstraße. 5, Germany; Aquatic Ecology, University of Duisburg-Essen, 45141 Essen, Universitätsstraße. 5, Germany; Research Center One Health Ruhr of the University Alliance Ruhr, University of Duisburg-Essen, 45141 Essen, Universitätsstraße 5, Germany
| | - Alexander J Probst
- Centre for Water and Environmental Research, University of Duisburg-Essen, 45141 Essen, Universitätsstraße. 5, Germany; Environmental Metagenomics, Research Center One Health Ruhr of the University Alliance Ruhr, Faculty of Chemistry, University of Duisburg-Essen, 45141 Essen, Germany; Centre for Medical Biotechnology (ZMB), University of Duisburg-Essen, Universitätsstraße 5, 45141 Essen, Germany
| | - Torsten C Schmidt
- Centre for Water and Environmental Research, University of Duisburg-Essen, 45141 Essen, Universitätsstraße. 5, Germany; Instrumental Analytical Chemistry, University of Duisburg-Essen, 45141 Essen, Universitätsstraße 5, Germany
| | - Daniela Beisser
- Biodiversity, University of Duisburg-Essen, Universitätsstraße 5, 45141 Essen, Germany; Centre for Water and Environmental Research, University of Duisburg-Essen, 45141 Essen, Universitätsstraße. 5, Germany
| | - Jens Boenigk
- Biodiversity, University of Duisburg-Essen, Universitätsstraße 5, 45141 Essen, Germany; Centre for Water and Environmental Research, University of Duisburg-Essen, 45141 Essen, Universitätsstraße. 5, Germany
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Gonçalves LC, Roberto MM, Peixoto PVL, Viriato C, da Silva AFC, de Oliveira VJA, Nardi MCC, Pereira LC, de Angelis DDF, Marin-Morales MA. Toxicity of Beauty Salon Effluents Contaminated with Hair Dye on Aquatic Organisms. TOXICS 2023; 11:911. [PMID: 37999563 PMCID: PMC10674561 DOI: 10.3390/toxics11110911] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2023] [Revised: 09/10/2023] [Accepted: 09/28/2023] [Indexed: 11/25/2023]
Abstract
Cosmetic residues have been found in water resources, especially trace elements of precursors, couplers, and pigments of hair dyes, which are indiscriminately disposed of in the sewage system. These contaminants are persistent, bioactive, and bioaccumulative, and may pose risks to living beings. Thus, the present study assessed the ecotoxicity of two types of effluents generated in beauty salons after the hair dyeing process. The toxicity of effluent derived from capillary washing with water, shampoo, and conditioner (complete effluent-CE) and effluent not associated with these products (dye effluent-DE) was evaluated by tests carried out with the aquatic organisms Artemia salina, Daphnia similis, and Danio rerio. The bioindicators were exposed to pure samples and different dilutions of both effluents. The results showed toxicity in D. similis (CE50 of 3.43% and 0.54% for CE and DE, respectively); A. salina (LC50 8.327% and 3.874% for CE and DE, respectively); and D. rerio (LC50 of 4.25-4.59% and 7.33-8.18% for CE and DE, respectively). Given these results, we can infer that hair dyes, even at low concentrations, have a high toxic potential for aquatic biota, as they induced deleterious effects in all tested bioindicators.
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Affiliation(s)
- Letícia C. Gonçalves
- Department of General and Applied Biology, Institute of Biosciences, São Paulo State University (Unesp), Av. 24-A, 1515, Bela Vista, Rio Claro 13506-900, SP, Brazil; (L.C.G.); (A.F.C.d.S.); (V.J.A.d.O.); (D.d.F.d.A.)
- University Center of Hermínio Ometto Foundation (FHO), Av. Dr. Maximiliano Baruto, 500, Jardim Universitário, Araras 13607-339, SP, Brazil;
| | - Matheus M. Roberto
- University Center of Hermínio Ometto Foundation (FHO), Av. Dr. Maximiliano Baruto, 500, Jardim Universitário, Araras 13607-339, SP, Brazil;
| | - Paloma V. L. Peixoto
- Center for Evaluation of Environmental Impact on Human Health (TOXICAM), Botucatu Medical School, São Paulo State University (Unesp), Av. Prof. Mário Rubens Guimarães Montenegro, s/n, Rubião Júnior, Botucatu 18618-687, SP, Brazil; (P.V.L.P.); (C.V.); (L.C.P.)
- Department of Pathology, Botucatu Medical School, São Paulo State University (Unesp), Av. Prof. Mário Rubens Guimarães Montenegro, s/n, Rubião Júnior, Botucatu 18618-687, SP, Brazil
| | - Cristina Viriato
- Center for Evaluation of Environmental Impact on Human Health (TOXICAM), Botucatu Medical School, São Paulo State University (Unesp), Av. Prof. Mário Rubens Guimarães Montenegro, s/n, Rubião Júnior, Botucatu 18618-687, SP, Brazil; (P.V.L.P.); (C.V.); (L.C.P.)
- Department of Bioprocesses and Biotechnology, São Paulo State University (Unesp), R. Dr. José Barbosa de Barros, 1780, Fazenda Experimental Lageado, Botucatu 18610-307, SP, Brazil
| | - Adriana F. C. da Silva
- Department of General and Applied Biology, Institute of Biosciences, São Paulo State University (Unesp), Av. 24-A, 1515, Bela Vista, Rio Claro 13506-900, SP, Brazil; (L.C.G.); (A.F.C.d.S.); (V.J.A.d.O.); (D.d.F.d.A.)
| | - Valdenilson J. A. de Oliveira
- Department of General and Applied Biology, Institute of Biosciences, São Paulo State University (Unesp), Av. 24-A, 1515, Bela Vista, Rio Claro 13506-900, SP, Brazil; (L.C.G.); (A.F.C.d.S.); (V.J.A.d.O.); (D.d.F.d.A.)
| | - Mariza C. C. Nardi
- University Center of Hermínio Ometto Foundation (FHO), Av. Dr. Maximiliano Baruto, 500, Jardim Universitário, Araras 13607-339, SP, Brazil;
| | - Lilian C. Pereira
- Center for Evaluation of Environmental Impact on Human Health (TOXICAM), Botucatu Medical School, São Paulo State University (Unesp), Av. Prof. Mário Rubens Guimarães Montenegro, s/n, Rubião Júnior, Botucatu 18618-687, SP, Brazil; (P.V.L.P.); (C.V.); (L.C.P.)
- School of Agriculture (FCA), São Paulo State University (Unesp), Av. Universitária, 3780, Fazenda Experimental Lageado, Botucatu 18610-034, SP, Brazil
| | - Dejanira de F. de Angelis
- Department of General and Applied Biology, Institute of Biosciences, São Paulo State University (Unesp), Av. 24-A, 1515, Bela Vista, Rio Claro 13506-900, SP, Brazil; (L.C.G.); (A.F.C.d.S.); (V.J.A.d.O.); (D.d.F.d.A.)
| | - Maria A. Marin-Morales
- Department of General and Applied Biology, Institute of Biosciences, São Paulo State University (Unesp), Av. 24-A, 1515, Bela Vista, Rio Claro 13506-900, SP, Brazil; (L.C.G.); (A.F.C.d.S.); (V.J.A.d.O.); (D.d.F.d.A.)
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Kan P, Zhang N, Zeng B, Yao J, Zhi S, Chen H, Yao Z, Yangyao J, Zhang Z. Satellite taxa regulated the response of constructed wetlands microeukaryotic community to changing hydraulic loading rate. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 863:160742. [PMID: 36528101 DOI: 10.1016/j.scitotenv.2022.160742] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Revised: 11/20/2022] [Accepted: 12/03/2022] [Indexed: 06/17/2023]
Abstract
Revealing how species interaction and assembly processes structure the core and satellite microeukaryotic subcommunities in an engineering environment is crucial for understanding how biodiversity influences system function. By investigating the core and satellite microeukaryotic subcommunities in constructed wetlands (CWs), we depicted an integrated distribution pattern of microeukaryotic communities in the CWs with different hydraulic loading rates (HLRs). Surprisingly, our results suggested that high HLR reduced the diversity and network stability of the microeukaryote community in CW. The stochastic process becomes more important with the increased HLR. In addition, satellite and core taxa varied inconsistently under different HLRs except for niche breadth. And the changes in all taxa were consistent with those in satellite taxa. Satellite taxa, but not core taxa, was an important driver in shaping the dynamics of microeukaryotic communities and played an important role in maintaining the stability of the microeukaryotic community. Overall, our results not only fill a gap in understanding the microeukaryotic community dynamics and its basic drivers of CWs under different HLRs but also highlights the particular importance of satellite microeukaryotes in mediating biogeochemical cycles in CWs ecosystems.
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Affiliation(s)
- Peiying Kan
- School of Civil and Environmental Engineering, Ningbo University, Ningbo 315211, China; Institute of Ocean Engineering, Ningbo University, Ningbo 315211, China
| | - Nan Zhang
- School of Civil and Environmental Engineering, Ningbo University, Ningbo 315211, China; Institute of Ocean Engineering, Ningbo University, Ningbo 315211, China
| | - Bianhao Zeng
- School of Civil and Environmental Engineering, Ningbo University, Ningbo 315211, China
| | - Jiafeng Yao
- School of Civil and Environmental Engineering, Ningbo University, Ningbo 315211, China
| | - Shuai Zhi
- School of Medicine, Ningbo University, Ningbo 315211, China
| | - Huaihai Chen
- School of Ecology, Sun Yat-sen University, Shenzhen 518107, China; State Key Laboratory of Biocontrol, Sun Yat-sen University, Shenzhen 518107, China
| | - Zhiyuan Yao
- School of Civil and Environmental Engineering, Ningbo University, Ningbo 315211, China; Institute of Ocean Engineering, Ningbo University, Ningbo 315211, China.
| | - Jiannan Yangyao
- School of Marine Sciences, Ningbo University, Ningbo 315211, China
| | - Zheyun Zhang
- Institute of Ocean Engineering, Ningbo University, Ningbo 315211, China
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Microbial community shifts induced by plastic and zinc as substitutes of tire abrasion. Sci Rep 2022; 12:18684. [PMID: 36333419 PMCID: PMC9636222 DOI: 10.1038/s41598-022-22906-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Accepted: 10/20/2022] [Indexed: 11/06/2022] Open
Abstract
Aquatic environments serve as a sink for anthropogenic discharges. A significant part of the discharge is tire wear, which is increasingly being released into the environment, causing environmental disasters due to their longevity and the large number of pollutants they contain. Main components of tires are plastic and zinc, which therefore can be used as substitutes for tire abrasion to study the effect on microbial life. We investigate environmentally realistic concentrations of plastic and zinc on a freshwater microeukaryotic community using high-throughput sequencing of the 18S V9 region over a 14-day exposure period. Apart from a generally unchanged diversity upon exposure to zinc and nanoplastics, a change in community structure due to zinc is evident, but not due to nanoplastics. Evidently, nanoplastic particles hardly affect the community, but zinc exposure results in drastic functional abundance shifts concerning the trophic mode. Phototrophic microorganisms were almost completely diminished initially, but photosynthesis recovered. However, the dominant taxa performing photosynthesis changed from bacillariophytes to chlorophytes. While phototrophic organisms are decreasing in the presence of zinc, the mixotrophic fraction initially benefitted and the heterotrophic fraction were benefitting throughout the exposure period. In contrast to lasting changes in taxon composition, the functional community composition is initially strongly imbalanced after application of zinc but returns to the original state.
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Jamy M, Biwer C, Vaulot D, Obiol A, Jing H, Peura S, Massana R, Burki F. Global patterns and rates of habitat transitions across the eukaryotic tree of life. Nat Ecol Evol 2022; 6:1458-1470. [PMID: 35927316 PMCID: PMC9525238 DOI: 10.1038/s41559-022-01838-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2021] [Accepted: 06/23/2022] [Indexed: 12/30/2022]
Abstract
The successful colonization of new habitats has played a fundamental role during the evolution of life. Salinity is one of the strongest barriers for organisms to cross, which has resulted in the evolution of distinct marine and non-marine (including both freshwater and soil) communities. Although microbes represent by far the vast majority of eukaryote diversity, the role of the salt barrier in shaping the diversity across the eukaryotic tree is poorly known. Traditional views suggest rare and ancient marine/non-marine transitions but this view is being challenged by the discovery of several recently transitioned lineages. Here, we investigate habitat evolution across the tree of eukaryotes using a unique set of taxon-rich phylogenies inferred from a combination of long-read and short-read environmental metabarcoding data spanning the ribosomal DNA operon. Our results show that, overall, marine and non-marine microbial communities are phylogenetically distinct but transitions have occurred in both directions in almost all major eukaryotic lineages, with hundreds of transition events detected. Some groups have experienced relatively high rates of transitions, most notably fungi for which crossing the salt barrier has probably been an important aspect of their successful diversification. At the deepest phylogenetic levels, ancestral habitat reconstruction analyses suggest that eukaryotes may have first evolved in non-marine habitats and that the two largest known eukaryotic assemblages (TSAR and Amorphea) arose in different habitats. Overall, our findings indicate that the salt barrier has played an important role during eukaryote evolution and provide a global perspective on habitat transitions in this domain of life.
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Affiliation(s)
- Mahwash Jamy
- Department of Organismal Biology (Systematic Biology), Uppsala University, Uppsala, Sweden
| | - Charlie Biwer
- Department of Organismal Biology (Systematic Biology), Uppsala University, Uppsala, Sweden
| | - Daniel Vaulot
- CNRS, UMR7144, Team ECOMAP, Station Biologique, Sorbonne Université, Roscoff, France
| | - Aleix Obiol
- Department of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona, Spain
| | - Hongmei Jing
- CAS Key Lab for Experimental Study Under Deep-sea Extreme Conditions, Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences, Sanya, China
| | - Sari Peura
- Department of Ecology and Genetics (Limnology), Uppsala University, Uppsala, Sweden
- Science for Life Laboratory, Uppsala University, Uppsala, Sweden
| | - Ramon Massana
- Department of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona, Spain
| | - Fabien Burki
- Department of Organismal Biology (Systematic Biology), Uppsala University, Uppsala, Sweden.
- Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
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Šimek K, Mukherjee I, Nedoma J, de Paula CCP, Jezberová J, Sirová D, Vrba J. CARD-FISH and prey tracer techniques reveal the role of overlooked flagellate groups as major bacterivores in freshwater hypertrophic shallow lakes. Environ Microbiol 2022; 24:4256-4273. [PMID: 34933408 PMCID: PMC9788210 DOI: 10.1111/1462-2920.15846] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Revised: 11/08/2021] [Accepted: 11/08/2021] [Indexed: 12/30/2022]
Abstract
Heterotrophic nanoflagellates (HNF) and ciliates are major protistan planktonic bacterivores. The term HNF, however, describes a functional guild only and, in contrast to the morphologically distinguishable ciliates, does not reflect the phylogenetic diversity of flagellates in aquatic ecosystems. Associating a function with taxonomic affiliation of key flagellate taxa is currently a major task in microbial ecology. We investigated seasonal changes in the HNF and ciliate community composition as well as taxa-specific bacterivory in four hypertrophic freshwater lakes. Taxa-specific catalyzed reporter deposition-fluorescence in situ hybridization probes assigned taxonomic affiliations to 51%-96% (average ±SD, 75 ± 14%) of total HNF. Ingestion rates of fluorescently labelled bacteria unveiled that HNF contributed to total protist-induced bacterial mortality rates more (56%) than ciliates (44%). Surprisingly, major HNF bacterivores were aplastidic cryptophytes and their Cry1 lineage, comprising on average 53% and 24% of total HNF abundance and 67% and 21% of total HNF bacterivory respectively. Kinetoplastea were important consumers of bacteria during summer phytoplankton blooms, reaching 38% of total HNF. Katablepharidacea (7.5% of total HNF) comprised mainly omnivores, with changing contributions of bacterivorous and algivorous phylotypes. Our results show that aplastidic cryptophytes, accompanied by small omnivorous ciliate genera Halteria/Pelagohalteria, are the major protistan bacterivores in hypertrophic freshwaters.
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Affiliation(s)
- Karel Šimek
- Biology Centre CAS, Institute of Hydrobiology, Na Sádkách 7České Budějovice37005Czech Republic,Faculty of ScienceUniversity of South Bohemia, Branišovská 1760České Budějovice37005Czech Republic
| | - Indranil Mukherjee
- Biology Centre CAS, Institute of Hydrobiology, Na Sádkách 7České Budějovice37005Czech Republic
| | - Jiří Nedoma
- Biology Centre CAS, Institute of Hydrobiology, Na Sádkách 7České Budějovice37005Czech Republic
| | | | - Jitka Jezberová
- Biology Centre CAS, Institute of Hydrobiology, Na Sádkách 7České Budějovice37005Czech Republic
| | - Dagmara Sirová
- Biology Centre CAS, Institute of Hydrobiology, Na Sádkách 7České Budějovice37005Czech Republic
| | - Jaroslav Vrba
- Biology Centre CAS, Institute of Hydrobiology, Na Sádkách 7České Budějovice37005Czech Republic,Faculty of ScienceUniversity of South Bohemia, Branišovská 1760České Budějovice37005Czech Republic
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9
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Gulin V, Vlaičević B, Sertić Perić M, Rebrina F, Matoničkin Kepčija R. Taxonomic and Functional Metrics of Ciliates and Amoeboid Protists in Response to Stream Revitalization. Front Microbiol 2022; 13:842395. [PMID: 35432285 PMCID: PMC9010972 DOI: 10.3389/fmicb.2022.842395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2021] [Accepted: 03/08/2022] [Indexed: 11/16/2022] Open
Abstract
Tufa-depositing streams provide great microhabitat complexity and are therefore inhabited by various periphytic phagotrophic organisms such as ciliates and amoeboid protists. Recent removal of invasive plant species Ailanthus altissima (Mill.) Swinge from the Skradinski buk tufa barrier (Krka National Park, Croatia) resulted in changes in the barrier hydromorphology including the reactivation (revitalization) of dry streams. The objective of this study was to investigate: (1) the taxonomic and functional response of periphytic ciliates and amoeboid protists to stream revitalization by comparing taxonomic (i.e., abundance, species richness and diversity) and functional (i.e., functional diversity) metrics between revitalized (N) and control sites (C) during 1 and 2-months immersion period; (2) which environmental and (3) periphyton-associated factors shape the taxonomic and functional metrics and to what extent; (4) how duration of immersion affects taxonomic and functional metrics at revitalized sites. Our results showed that taxonomic and functional metrics of ciliates and amoeboid protists responded to the prevailing conditions characteristic of revitalized tufa-depositing streams: changing hydrology (occasional high flow or drought), soil drainage, and extensive inorganic matter, i.e., tufa deposition, although their responses were somewhat different. The two assemblages also showed different responses of taxonomic and functional metrics with respect to immersion duration: while the taxonomic and functional diversity of ciliates at N sites increased with longer immersion, indicating niche diversification, those of amoeboid protists hardly changed with time. Our results suggest that a comprehensive analysis of taxonomic and functional metrics of ciliates and amoeboid protists could be a good proxy for assessing revitalization of tufa-depositing streams. However, the temporal component should always be considered when conducting such studies, as the colonization processes of ciliates and amoeboid protists are quite complex, especially in tufa-depositing streams.
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Affiliation(s)
- Vesna Gulin
- Department of Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia
- *Correspondence: Vesna Gulin,
| | - Barbara Vlaičević
- Department of Biology, Josip Juraj Strossmayer University of Osijek, Osijek, Croatia
| | - Mirela Sertić Perić
- Department of Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia
| | - Fran Rebrina
- Department of Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia
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